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{{f5samples
{{f5samples
|id=FF:13163-141B4
|DRA_sample_Accession=CAGE@SAMD00005157
|name=MCF7 breast cancer cell line response to EGF1, 00hr00min, biol_rep3
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005157
|sample_id=13163
|accession_numbers=CAGE;DRX008593;DRR009465;DRZ000890;DRZ002275;DRZ012240;DRZ013625
|rna_tube_id=141B4
|accession_numbers_RNASeq=sRNA-Seq;DRX037288;DRR041654;DRZ007296
|rna_box=141
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000310,UBERON:0002100,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0001062,UBERON:0009569,UBERON:0001443,UBERON:0000915
|rna_position=B4
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000255
|sample_cell_lot=
|ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:14566,DOID:0050687,DOID:7,DOID:5093,DOID:305,DOID:299,DOID:1612
|sample_cell_catalog=
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0000350,FF:0000344,FF:0000330,FF:0100093,FF:0100297,FF:0101912,FF:0101120,FF:0100816,FF:0100167,FF:0100356,FF:0000426
|sample_company=
|comment=
|rna_lot_number=
|created_by=
|rna_catalog_number=
|creation_date=
|sample_species=Human (Homo sapiens)
|data_phase=2
|sample_strain=
|datafreeze_phase=2
|sample_dev_stage=
|def=
|sample_tissue=breast
|donor=biol_rep3
|sample_donor(cell lot)=rep3
|expression_enrichment_score=chr10:8096631..8096660,+!p1@GATA3!2.81!763.19!GATA3;;chr14:38064429..38064486,-!p1@FOXA1!2.59!383.74!FOXA1;;chr6:34524093..34524135,-!p1@SPDEF!2.39!245.53!SPDEF;;chr20:55204351..55204377,+!p1@TFAP2C!2.13!167.40!TFAP2C;;chr1:201979743..201979762,+!p1@ELF3!1.96!90.14!ELF3;;chr10:8096772..8096787,+!p2@GATA3!1.91!93.57!GATA3;;chr17:59477233..59477263,+!p1@TBX2!1.73!157.96!TBX2;;chr22:29196433..29196445,-!p4@XBP1!1.66!48.93!XBP1;;chr8:102504651..102504683,+!p1@GRHL2!1.63!42.07!GRHL2;;chr17:59477197..59477212,+!p2@TBX2!1.56!59.24!TBX2;;chr5:2751762..2751784,-!p1@IRX2!1.53!32.62!IRX2;;chr10:8095593..8095625,+!p3@GATA3!1.50!36.06!GATA3;;chr6:152128810..152128827,+!p2@ESR1!1.50!30.91!ESR1;;chr22:29196492..29196503,-!p3@XBP1!1.49!45.50!XBP1;;chr10:8097321..8097348,+!p4@GATA3!1.44!26.61!GATA3;;chr10:8100691..8100732,+!p5@GATA3!1.43!25.75!GATA3;;chr14:37131058..37131139,+!p1@PAX9!1.43!25.75!PAX9;;chr3:147111198..147111225,+!p4@ZIC1!1.43!25.75!ZIC1;;chr6:126070769..126070801,+!p1@HEY2!1.42!29.19!HEY2;;chr15:96869511..96869525,+!p16@NR2F2!1.40!26.61!NR2F2;;chr8:99956662..99956684,+!p1@OSR2!1.39!36.06!OSR2;;chr8:102504979..102505010,+!p2@GRHL2!1.37!22.32!GRHL2;;chr9:129376233..129376251,+!p2@LMX1B!1.37!22.32!LMX1B;;chr22:29196547..29196563,-!p2@XBP1!1.34!740.87!XBP1;;chr20:50159198..50159299,-!p1@NFATC2!1.30!27.47!NFATC2;;chr12:53625966..53626012,-!p2@RARG!1.27!46.36!RARG;;chr11:65554528..65554546,+!p1@OVOL1!1.26!17.17!OVOL1;;chr3:147111231..147111281,+!p3@ZIC1!1.26!17.17!ZIC1;;chr17:59477403..59477414,+!p4@TBX2!1.26!17.17!TBX2;;chr5:174151553..174151610,+!p1@MSX2!1.25!27.47!MSX2;;chr19:45579725..45579743,-!p1@ZNF296!1.24!72.97!ZNF296;;chr14:75988771..75988826,+!p1@BATF!1.23!21.46!BATF;;chr6:135502501..135502546,+!p1@MYB!1.22!18.89!MYB;;chr14:38064307..38064323,-!p3@FOXA1!1.22!15.45!FOXA1;;chr14:38064590..38064606,-!p2@FOXA1!1.22!15.45!FOXA1;;chr20:46130619..46130664,+!p1@NCOA3!1.20!397.48!NCOA3;;chr9:129376201..129376225,+!p1@LMX1B!1.19!14.59!LMX1B;;chr16:29818199..29818216,+!p11@MAZ!1.18!23.18!MAZ;;chr8:102504690..102504704,+!p3@GRHL2!1.17!13.74!GRHL2;;chr10:8097295..8097320,+!p6@GATA3!1.17!13.74!GATA3;;chr14:38064495..38064506,-!p4@FOXA1!1.17!13.74!FOXA1;;chr11:65554563..65554576,+!p2@OVOL1!1.14!12.88!OVOL1;;chr5:2751785..2751808,-!p2@IRX2!1.14!12.88!IRX2;;chr20:42295745..42295765,+!p1@MYBL2!1.13!202.60!MYBL2;;chr6:10415276..10415341,-!p2@TFAP2A!1.13!15.45!TFAP2A;;chr12:54332608..54332636,+!p1@HOXC13!1.11!12.02!HOXC13;;chr16:54964740..54964789,+!p1@IRX5!1.09!16.31!IRX5;;chr1:201979703..201979721,+!p2@ELF3!1.08!11.16!ELF3;;chr20:52210553..52210568,-!p7@ZNF217!1.08!11.16!ZNF217;;chr1:935398..935465,-!p2@HES4!1.05!21.46!HES4;;chr14:105267423..105267443,+!p2@ZBTB42!1.05!10.30!ZBTB42;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.05!10.30!ZBED1;;chr14:95236551..95236576,-!p2@GSC!1.05!10.30!GSC;;chr8:22550982..22550999,-!p1@EGR3!1.04!28.33!EGR3;;chr17:59477275..59477286,+!p3@TBX2!1.03!12.88!TBX2;;chr16:29818160..29818188,+!p6@MAZ!1.02!44.64!MAZ;;chr5:174151612..174151633,+!p2@MSX2!1.02!9.44!MSX2;;chr6:152128782..152128803,+!p5@ESR1!1.02!9.44!ESR1;;chr10:48355030..48355090,+!p1@ZNF488!1.01!12.02!ZNF488;;chr1:149858461..149858479,+!p1@BOLA1!0.98!3417.63!BOLA1;;chr17:61920023..61920110,-!p1@SMARCD2!0.98!121.91!SMARCD2;;chr3:128206762..128206781,-!p2@GATA2!0.98!54.08!GATA2;;chr15:67418177..67418204,+!p9@SMAD3!0.98!8.58!SMAD3;;chr10:135122906..135122921,+!p4@ZNF511!0.98!8.58!ZNF511;;chr14:38065203..38065215,-!p9@FOXA1!0.98!8.58!FOXA1;;chr7:156803329..156803362,-!p1@MNX1!0.98!8.58!MNX1;;chr1:23857698..23857733,-!p1@E2F2!0.97!15.45!E2F2;;chr1:209979467..209979494,-!p1@IRF6!0.97!9.44!IRF6;;chr5:176738887..176738934,-!p1@MXD3!0.96!55.80!MXD3;;chr19:48774586..48774670,+!p1@ZNF114!0.96!10.30!ZNF114;;chr8:116681409..116681431,-!p2@TRPS1!0.95!22.32!TRPS1;;chr8:37553292..37553317,+!p1@ZNF703!0.94!188.87!ZNF703;;chr17:17726907..17726958,-!p2@SREBF1!0.94!49.79!SREBF1;;chr15:67418119..67418162,+!p5@SMAD3!0.94!8.58!SMAD3;;chr20:18038521..18038571,-!p1@OVOL2!0.94!7.73!OVOL2;;chr17:61919985..61920012,-!p3@SMARCD2!0.93!18.89!SMARCD2;;chr8:125985531..125985571,+!p1@ZNF572!0.93!15.45!ZNF572;;chr2:157199008..157199023,-!p3@NR4A2!0.91!15.45!NR4A2;;chr2:71127699..71127744,+!p1@VAX2!0.90!14.59!VAX2;;chr6:10413188..10413249,-!p7@TFAP2A!0.90!6.87!TFAP2A;;chr6:152011654..152011682,+!p1@ESR1!0.90!6.87!ESR1;;chr6:152126830..152126847,+!p4@ESR1!0.90!6.87!ESR1;;chr14:95236440..95236465,-!p1@GSC!0.90!6.87!GSC;;chr19:33793430..33793447,-!p1@CEBPA!0.89!30.05!CEBPA;;chr20:46130602..46130613,+!p3@NCOA3!0.89!20.60!NCOA3;;chr15:67418047..67418093,+!p4@SMAD3!0.89!8.58!SMAD3;;chr6:10412392..10412409,-!p4@TFAP2A!0.89!7.73!TFAP2A;;chr9:110252035..110252057,-!p1@KLF4!0.88!110.74!KLF4;;chr7:149470641..149470694,-!p1@ZNF467!0.86!30.05!ZNF467;;chr11:47236584..47236679,+!p1@DDB2!0.85!70.40!DDB2;;chr6:34524049..34524089,-!p2@SPDEF!0.85!6.01!SPDEF;;chr7:155250249..155250278,+!p@chr7:155250249..155250278,+!0.85!6.01!EN2;;chr17:80797886..80797906,-!p1@ZNF750!0.85!6.01!ZNF750;;chr20:46130672..46130686,+!p2@NCOA3!0.83!27.47!NCOA3;;chr14:69262789..69262822,-!p2@ZFP36L1!0.82!15.45!ZFP36L1;;chr19:44764031..44764072,+!p1@ZNF233!0.81!6.87!ZNF233;;chr19:49140609..49140643,-!p1@DBP!0.80!32.62!DBP;;chr12:80084737..80084763,-!p3@PAWR!0.80!21.46!PAWR;;chr1:149871171..149871192,+!p4@BOLA1!0.80!12.88!BOLA1;;chr16:29818132..29818144,+!p12@MAZ!0.80!11.16!MAZ;;chr17:61919812..61919833,-!p6@SMARCD2!0.80!6.87!SMARCD2;;chr20:39317868..39317884,-!p1@MAFB!0.79!66.96!MAFB;;chr20:55205791..55205817,+!p3@TFAP2C!0.79!5.15!TFAP2C;;chr10:135122868..135122893,+!p3@ZNF511!0.79!5.15!ZNF511;;chr14:38064536..38064550,-!p7@FOXA1!0.79!5.15!FOXA1;;chr3:181429741..181429767,+!p2@SOX2!0.79!5.15!SOX2;;chr6:135502472..135502489,+!p3@MYB!0.79!5.15!MYB;;chr6:152011695..152011709,+!p6@ESR1!0.79!5.15!ESR1;;chr6:34524025..34524045,-!p3@SPDEF!0.79!5.15!SPDEF;;chr3:150126101..150126118,+!p6@TSC22D2!0.78!8.58!TSC22D2;;chr19:17356189..17356221,-!p2@NR2F6!0.78!8.58!NR2F6;;chr1:154975258..154975330,+!p1@ZBTB7B!0.77!19.75!ZBTB7B;;chr17:7388010..7388017,-!p5@ZBTB4!0.77!8.58!ZBTB4;;chr6:10412600..10412637,-!p1@TFAP2A!0.77!8.58!TFAP2A;;chr1:41827095..41827155,+!p1@FOXO6!0.77!6.87!FOXO6;;chr11:120107344..120107351,+!p1@POU2F3!0.77!6.01!POU2F3;;chr2:172967621..172967637,-!p1@DLX2!0.76!13.74!DLX2;;chr17:38465413..38465438,+!p5@RARA!0.75!7.73!RARA;;chr8:81397820..81397836,+!p2@ZBTB10!0.75!6.01!ZBTB10;;chr8:81397846..81397860,+!p3@ZBTB10!0.75!6.01!ZBTB10;;chr8:37553261..37553282,+!p2@ZNF703!0.74!37.77!ZNF703;;chr2:239148671..239148686,-!p1@HES6!0.74!18.03!HES6;;chr6:41040923..41040952,+!p2@NFYA!0.74!12.88!NFYA;;chr1:151254738..151254787,+!p1@ZNF687!0.73!45.50!ZNF687;;chr14:64971288..64971316,-!p2@ZBTB25!0.73!14.59!ZBTB25;;chr9:137217986..137218049,+!p3@RXRA!0.73!13.74!RXRA;;chr18:3449330..3449344,+!p10@TGIF1!0.73!6.01!TGIF1;;chr17:48072574..48072597,-!p1@DLX3!0.72!4.29!DLX3;;chr9:126774018..126774055,+!p1@LHX2!0.72!4.29!LHX2;;chr3:181429704..181429722,+!p1@SOX2!0.72!4.29!SOX2;;chr6:126070748..126070768,+!p2@HEY2!0.72!4.29!HEY2;;chr6:135513595..135513617,+!p4@MYB!0.72!4.29!MYB;;chr10:8100452..8100463,+!p20@GATA3!0.72!4.29!GATA3;;chr11:101000445..101000465,-!p5@PGR!0.72!4.29!PGR;;chr11:129245526..129245553,+!p1@BARX2!0.72!4.29!BARX2;;chr1:10856694..10856715,-!p3@CASZ1!0.72!4.29!CASZ1;;chr1:151804244..151804310,-!p1@RORC!0.72!4.29!RORC;;chr1:154975229..154975247,+!p6@ZBTB7B!0.72!4.29!ZBTB7B;;chr20:18037473..18037494,-!p3@OVOL2!0.72!4.29!OVOL2;;chr20:55205825..55205847,+!p2@TFAP2C!0.72!4.29!TFAP2C;;chr20:62601243..62601291,-!p1@ZNF512B!0.71!45.50!ZNF512B;;chr6:20402102..20402152,+!p1@E2F3!0.71!18.89!E2F3;;chr11:47270436..47270464,+!p2@NR1H3!0.71!9.44!NR1H3;;chr17:42299455..42299485,-!p12@UBTF!0.71!6.01!UBTF;;chr11:62521614..62521646,-!p1@ZBTB3!0.70!23.18!ZBTB3;;chr19:12721513..12721572,-!p1@ZNF490!0.70!18.89!ZNF490;;chr19:12551785..12551823,-!p1@ZNF443!0.70!6.87!ZNF443;;chr15:96876966..96877017,+!p12@NR2F2!0.70!6.01!NR2F2;;chr17:38465441..38465481,+!p6@RARA!0.70!5.15!RARA;;chr1:202777535..202777556,-!p1@KDM5B!0.68!146.80!KDM5B;;chr13:41593425..41593480,-!p1@ELF1!0.68!27.47!ELF1;;chr8:67525443..67525459,-!p2@MYBL1!0.68!6.01!MYBL1;;chr16:88519669..88519726,+!p1@ZFPM1!0.67!37.77!ZFPM1;;chr19:12551824..12551846,-!p2@ZNF443!0.67!5.15!ZNF443;;chr20:46130727..46130734,+!p4@NCOA3!0.67!5.15!NCOA3;;chr2:10091815..10091864,+!p1@GRHL1!0.67!5.15!GRHL1;;chr22:31742303..31742350,-!p1@PATZ1!0.66!45.50!PATZ1;;chr6:15246200..15246214,+!p2@JARID2!0.66!11.16!JARID2;;chr6:135502408..135502459,+!p2@MYB!0.66!4.29!MYB;;chr6:21593973..21593988,+!p1@SOX4!0.65!145.08!SOX4;;chr20:48807875..48807982,+!p2@CEBPB!0.65!89.28!CEBPB;;chr19:42580274..42580375,+!p1@ZNF574!0.65!46.36!ZNF574;;chr12:2986275..2986363,-!p1@FOXM1!0.65!40.35!FOXM1;;chr20:32274179..32274213,-!p1@E2F1!0.65!26.61!E2F1;;chr19:12146483..12146546,-!p1@ZNF433!0.65!14.59!ZNF433;;chr8:145669791..145669834,-!p1@TONSL!0.65!11.16!TONSL;;chr5:169532896..169532904,+!p1@FOXI1!0.65!3.43!FOXI1;;chr6:152129265..152129276,+!p13@ESR1!0.65!3.43!ESR1;;chr6:152130240..152130274,+!p9@ESR1!0.65!3.43!ESR1;;chr7:101917407..101917443,+!p3@CUX1!0.65!3.43!CUX1;;chr7:101917447..101917479,+!p4@CUX1!0.65!3.43!CUX1;;chr7:27190547..27190591,-!p1@HOXA6!0.65!3.43!HOXA6;;chr7:73038839..73038862,-!p1@MLXIPL!0.65!3.43!MLXIPL;;chr8:144512897..144512903,-!p1@MAFA!0.65!3.43!MAFA;;chr15:96880438..96880445,+!p23@NR2F2!0.65!3.43!NR2F2;;chr17:80797863..80797874,-!p2@ZNF750!0.65!3.43!ZNF750;;chr19:3574330..3574393,+!p2@HMG20B!0.65!3.43!HMG20B;;chr1:3569072..3569093,+!p1@TP73!0.65!3.43!TP73;;chr1:3569135..3569150,+!p3@TP73!0.65!3.43!TP73;;chr20:18038486..18038520,-!p2@OVOL2!0.65!3.43!OVOL2;;chr21:38071430..38071456,+!p1@SIM2!0.65!3.43!SIM2;;chr10:8097357..8097368,+!p15@GATA3!0.65!3.43!GATA3;;chr11:101000537..101000553,-!p1@PGR!0.65!3.43!PGR;;chr12:53625846..53625861,-!p6@RARG!0.65!3.43!RARG;;chr12:54393880..54393962,+!p1@HOXC9!0.65!3.43!HOXC9;;chr2:238592039..238592054,+!p4@LRRFIP1!0.65!3.43!LRRFIP1;;chr3:128207349..1282073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|sample_sex=female
|sample_age=
|sample_ethnicity=
|rna_rin=
|rna_od260/230=1.79
|rna_od260/280=2.02
|sample_cell_type=mammary gland epithelial cell
|sample_cell_line=MCF7
|sample_collaboration=Mariko Okada Hatakeyama (RIKEN RCAI)
|sample_experimental_condition=MCF7 breast cancer cell line response to Epidermal Growth Factor 1
|sample_disease=
|rna_sample_type=
|rna_extraction_protocol=Repurified by minelute
|rna_weight_ug=8.57
|rna_concentration=0.86
|sample_note=
|profile_hcage=CNhs12703,LSID953,release011,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000063,CL:0000066,CL:0000255,CL:0000548
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000310,UBERON:0000465,UBERON:0000468,UBERON:0000475,UBERON:0000915,UBERON:0001062,UBERON:0001443,UBERON:0005482
|ancestors_in_disease_facet=DOID:0050686,DOID:0050687,DOID:14566,DOID:1612,DOID:162,DOID:299,DOID:305,DOID:4,DOID:5093,DOID:7
|sample_description=
|fonse_cell_line=FF:0100816,FF:0101120
|fonse_cell_line=FF:0100816,FF:0101120
|fonse_cell_line_closure=FF:0100816,FF:0101120
|fonse_cell_line_closure=FF:0100816,FF:0101120
Line 66: Line 42:
|fonse_treatment=EFO:0000369,FF:0000330,FF:0000426,FF:13163-141B4
|fonse_treatment=EFO:0000369,FF:0000330,FF:0000426,FF:13163-141B4
|fonse_treatment_closure=EFO:0000369,FF:0000330,FF:0000426,FF:13163-141B4
|fonse_treatment_closure=EFO:0000369,FF:0000330,FF:0000426,FF:13163-141B4
|top_motifs=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.timecourse.hCAGE/MCF7%2520breast%2520cancer%2520cell%2520line%2520response%2520to%2520EGF1%252c%252000hr00min%252c%2520biol_rep3.CNhs12703.13163-141B4.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.timecourse.hCAGE/MCF7%2520breast%2520cancer%2520cell%2520line%2520response%2520to%2520EGF1%252c%252000hr00min%252c%2520biol_rep3.CNhs12703.13163-141B4.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.timecourse.hCAGE/MCF7%2520breast%2520cancer%2520cell%2520line%2520response%2520to%2520EGF1%252c%252000hr00min%252c%2520biol_rep3.CNhs12703.13163-141B4.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.timecourse.hCAGE/MCF7%2520breast%2520cancer%2520cell%2520line%2520response%2520to%2520EGF1%252c%252000hr00min%252c%2520biol_rep3.CNhs12703.13163-141B4.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.timecourse.hCAGE/MCF7%2520breast%2520cancer%2520cell%2520line%2520response%2520to%2520EGF1%252c%252000hr00min%252c%2520biol_rep3.CNhs12703.13163-141B4.hg38.nobarcode.ctss.bed.gz
|id=FF:13163-141B4
|is_a=EFO:0002091;;FF:0000426
|is_obsolete=
|library_id=CNhs12703
|library_id_phase_based=2:CNhs12703
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;13163
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10063.GATCAG.13163
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;13163
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10063.GATCAG.13163
|name=MCF7 breast cancer cell line response to EGF1
|namespace=FANTOM5
|part_of=
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|profile_hcage=CNhs12703,LSID953,release011,COMPLETED
|profile_rnaseq=
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|refex=http://refex.dbcls.jp/genelist.php?lang
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|rna_box=141
|rna_catalog_number=
|rna_concentration=0.86
|rna_extraction_protocol=Repurified by minelute
|rna_lot_number=
|rna_od260/230=1.79
|rna_od260/280=2.02
|rna_position=B4
|rna_rin=
|rna_sample_type=
|rna_tube_id=141B4
|rna_weight_ug=8.57
|rnaseq_library_id=SRhi10063.GATCAG
|sample_age=
|sample_category=time courses
|sample_cell_catalog=
|sample_cell_line=MCF7
|sample_cell_lot=
|sample_cell_type=mammary gland epithelial cell
|sample_collaboration=Mariko Okada Hatakeyama (RIKEN RCAI)
|sample_company=
|sample_description=
|sample_dev_stage=
|sample_disease=
|sample_donor(cell lot)=rep3
|sample_ethnicity=
|sample_experimental_condition=MCF7 breast cancer cell line response to Epidermal Growth Factor 1
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.8335202393372e-245!GO:0043231;intracellular membrane-bound organelle;3.01433145204656e-215!GO:0043227;membrane-bound organelle;4.09133416889602e-215!GO:0043226;organelle;1.52260401992905e-209!GO:0043229;intracellular organelle;5.29858372818803e-209!GO:0005737;cytoplasm;2.27006988823242e-166!GO:0044422;organelle part;1.27401331524055e-147!GO:0044446;intracellular organelle part;2.04599033749516e-146!GO:0044444;cytoplasmic part;1.89285359926928e-127!GO:0032991;macromolecular complex;2.26853410068739e-95!GO:0044237;cellular metabolic process;4.96416444710186e-95!GO:0005634;nucleus;2.52211244804088e-93!GO:0044238;primary metabolic process;3.05773358204433e-91!GO:0030529;ribonucleoprotein complex;1.46310508088769e-83!GO:0043170;macromolecule metabolic process;4.04115760710401e-82!GO:0005739;mitochondrion;9.72870805290754e-77!GO:0044428;nuclear part;5.85208676944962e-76!GO:0043233;organelle lumen;1.78194020388566e-72!GO:0031974;membrane-enclosed lumen;1.78194020388566e-72!GO:0003723;RNA binding;9.99701585048493e-67!GO:0005515;protein binding;1.22340477744511e-62!GO:0005840;ribosome;1.0100645293448e-54!GO:0043283;biopolymer metabolic process;4.02404306878696e-52!GO:0031090;organelle membrane;8.09867562055121e-51!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.05995303349569e-50!GO:0006396;RNA processing;5.01031418363404e-49!GO:0044429;mitochondrial part;5.01031418363404e-49!GO:0003735;structural constituent of ribosome;5.9419737602561e-48!GO:0006412;translation;7.44310182659544e-48!GO:0043234;protein complex;9.77761440443024e-48!GO:0031981;nuclear lumen;1.87477602816928e-46!GO:0010467;gene expression;5.25201415552819e-46!GO:0031967;organelle envelope;6.08156414859604e-45!GO:0031975;envelope;1.49932235218857e-44!GO:0015031;protein transport;5.26174306358508e-42!GO:0033036;macromolecule localization;4.54651429502176e-41!GO:0033279;ribosomal subunit;1.25267533646857e-40!GO:0044249;cellular biosynthetic process;3.13823100896628e-40!GO:0009058;biosynthetic process;5.27121551594412e-40!GO:0016043;cellular component organization and biogenesis;8.3209269437286e-40!GO:0006259;DNA metabolic process;1.34417737321735e-39!GO:0019538;protein metabolic process;2.4316887292008e-38!GO:0008104;protein localization;7.74226946010479e-38!GO:0045184;establishment of protein localization;1.39198704146438e-37!GO:0009059;macromolecule biosynthetic process;7.11484261343888e-37!GO:0016071;mRNA metabolic process;7.58409753365209e-37!GO:0005829;cytosol;4.31121350812537e-35!GO:0044260;cellular macromolecule metabolic process;5.62844454743458e-35!GO:0044267;cellular protein metabolic process;1.72123992631131e-34!GO:0008380;RNA splicing;6.52054441913056e-33!GO:0006397;mRNA processing;1.40947223097168e-32!GO:0065003;macromolecular complex assembly;1.47917357162692e-32!GO:0005740;mitochondrial envelope;1.80255927329894e-32!GO:0043228;non-membrane-bound organelle;2.9317819377395e-32!GO:0043232;intracellular non-membrane-bound organelle;2.9317819377395e-32!GO:0019866;organelle inner membrane;6.73034247995456e-32!GO:0031966;mitochondrial membrane;1.09371479841077e-30!GO:0006996;organelle organization and biogenesis;8.9650403848997e-30!GO:0005743;mitochondrial inner membrane;1.06180909679197e-29!GO:0005654;nucleoplasm;2.02355760018475e-29!GO:0022607;cellular component assembly;3.88668782600029e-28!GO:0005830;cytosolic ribosome (sensu Eukaryota);4.07923909487093e-28!GO:0046907;intracellular transport;5.40266320067395e-28!GO:0003676;nucleic acid binding;7.13931963138247e-28!GO:0022613;ribonucleoprotein complex biogenesis and assembly;6.72087623773102e-27!GO:0007049;cell cycle;5.26909944233885e-26!GO:0006886;intracellular protein transport;5.35164492903361e-26!GO:0044451;nucleoplasm part;3.34865371034245e-24!GO:0005681;spliceosome;8.5615932006021e-24!GO:0006119;oxidative phosphorylation;2.86863268408383e-23!GO:0044445;cytosolic part;6.80894431977934e-23!GO:0015934;large ribosomal subunit;9.37630104361197e-22!GO:0016070;RNA metabolic process;2.19044303038327e-21!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.32311786231038e-21!GO:0000166;nucleotide binding;3.030222163075e-21!GO:0016817;hydrolase activity, acting on acid anhydrides;3.13530468449858e-21!GO:0016462;pyrophosphatase activity;3.13530468449858e-21!GO:0006974;response to DNA damage stimulus;3.39000866596285e-21!GO:0031980;mitochondrial lumen;8.50595544692897e-21!GO:0005759;mitochondrial matrix;8.50595544692897e-21!GO:0017111;nucleoside-triphosphatase activity;1.27562916300753e-20!GO:0022402;cell cycle process;2.77264585695789e-20!GO:0044455;mitochondrial membrane part;2.98644670859015e-20!GO:0015935;small ribosomal subunit;5.70115250809296e-20!GO:0012505;endomembrane system;1.16889248188843e-19!GO:0016874;ligase activity;1.30912145384327e-19!GO:0051649;establishment of cellular localization;4.90173051643838e-19!GO:0005694;chromosome;6.88806130659081e-19!GO:0006512;ubiquitin cycle;1.8228651009565e-18!GO:0051641;cellular localization;3.04762812338164e-18!GO:0006281;DNA repair;3.71895290892723e-18!GO:0005730;nucleolus;4.77390429537253e-18!GO:0051186;cofactor metabolic process;8.24786751336116e-18!GO:0044427;chromosomal part;1.0064865208227e-17!GO:0000278;mitotic cell cycle;2.44187495752891e-17!GO:0051276;chromosome organization and biogenesis;2.63552666634002e-17!GO:0005746;mitochondrial respiratory chain;3.06039019975723e-16!GO:0009719;response to endogenous stimulus;3.12902165644345e-16!GO:0044265;cellular macromolecule catabolic process;3.18229398260491e-16!GO:0000502;proteasome complex (sensu Eukaryota);7.64313156121629e-16!GO:0005761;mitochondrial ribosome;1.25149142209868e-15!GO:0000313;organellar ribosome;1.25149142209868e-15!GO:0006457;protein folding;1.73864720539919e-15!GO:0006325;establishment and/or maintenance of chromatin architecture;1.80873817650412e-15!GO:0032553;ribonucleotide binding;2.47453307377884e-15!GO:0032555;purine ribonucleotide binding;2.47453307377884e-15!GO:0043285;biopolymer catabolic process;2.9640879387372e-15!GO:0008134;transcription factor binding;3.54335676471595e-15!GO:0022618;protein-RNA complex assembly;4.29820438868453e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);4.6556417998537e-15!GO:0048770;pigment granule;5.1225848565724e-15!GO:0042470;melanosome;5.1225848565724e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;6.89249428406771e-15!GO:0006323;DNA packaging;9.94934304083676e-15!GO:0016887;ATPase activity;1.08943793812793e-14!GO:0005783;endoplasmic reticulum;1.20266077826535e-14!GO:0008135;translation factor activity, nucleic acid binding;1.20791458916329e-14!GO:0050136;NADH dehydrogenase (quinone) activity;1.32618850388844e-14!GO:0003954;NADH dehydrogenase activity;1.32618850388844e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.32618850388844e-14!GO:0006732;coenzyme metabolic process;1.32759310753736e-14!GO:0044248;cellular catabolic process;1.37194198801135e-14!GO:0017076;purine nucleotide binding;1.37805941055391e-14!GO:0006260;DNA replication;1.63853507751122e-14!GO:0042623;ATPase activity, coupled;1.83065126730782e-14!GO:0044432;endoplasmic reticulum part;2.71687045550337e-14!GO:0009057;macromolecule catabolic process;3.11124264506429e-14!GO:0005524;ATP binding;4.36265804197601e-14!GO:0051603;proteolysis involved in cellular protein catabolic process;5.24381564311176e-14!GO:0032559;adenyl ribonucleotide binding;5.48982640482334e-14!GO:0031965;nuclear membrane;5.98146796877731e-14!GO:0000398;nuclear mRNA splicing, via spliceosome;7.06693902525072e-14!GO:0000375;RNA splicing, via transesterification reactions;7.06693902525072e-14!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;7.06693902525072e-14!GO:0019941;modification-dependent protein catabolic process;7.79776361413023e-14!GO:0043632;modification-dependent macromolecule catabolic process;7.79776361413023e-14!GO:0022403;cell cycle phase;8.96955922645012e-14!GO:0044257;cellular protein catabolic process;9.31639330234525e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.23125499190366e-13!GO:0006511;ubiquitin-dependent protein catabolic process;1.70506998197125e-13!GO:0005635;nuclear envelope;2.17993350211175e-13!GO:0000087;M phase of mitotic cell cycle;3.08188315198021e-13!GO:0007067;mitosis;3.72051828090432e-13!GO:0030554;adenyl nucleotide binding;4.82727930954792e-13!GO:0051082;unfolded protein binding;4.90068672958256e-13!GO:0051301;cell division;5.16858547060701e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;9.80345290740871e-13!GO:0042775;organelle ATP synthesis coupled electron transport;9.88627076326788e-13!GO:0042773;ATP synthesis coupled electron transport;9.88627076326788e-13!GO:0030964;NADH dehydrogenase complex (quinone);1.37372170377071e-12!GO:0045271;respiratory chain complex I;1.37372170377071e-12!GO:0005747;mitochondrial respiratory chain complex I;1.37372170377071e-12!GO:0006333;chromatin assembly or disassembly;1.48669593301012e-12!GO:0065004;protein-DNA complex assembly;1.65142959238365e-12!GO:0006605;protein targeting;3.01122387734522e-12!GO:0042254;ribosome biogenesis and assembly;4.68723656164772e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;4.7719258401164e-12!GO:0016604;nuclear body;7.4149463276786e-12!GO:0042175;nuclear envelope-endoplasmic reticulum network;8.25917435401143e-12!GO:0043412;biopolymer modification;9.72029222614179e-12!GO:0006399;tRNA metabolic process;1.2140076422555e-11!GO:0005789;endoplasmic reticulum membrane;1.28917986996338e-11!GO:0051726;regulation of cell cycle;1.41376798511475e-11!GO:0000785;chromatin;1.46800303785609e-11!GO:0030163;protein catabolic process;1.54344393419588e-11!GO:0044453;nuclear membrane part;1.8827799785762e-11!GO:0000279;M phase;1.94847255957167e-11!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.40899122857202e-11!GO:0000074;regulation of progression through cell cycle;3.34608049209954e-11!GO:0051188;cofactor biosynthetic process;3.89062282167474e-11!GO:0004386;helicase activity;6.92829564908341e-11!GO:0048193;Golgi vesicle transport;9.37666126760332e-11!GO:0006913;nucleocytoplasmic transport;1.9682887450344e-10!GO:0006163;purine nucleotide metabolic process;2.29948954803243e-10!GO:0005794;Golgi apparatus;2.50811834161476e-10!GO:0008026;ATP-dependent helicase activity;2.67671433805995e-10!GO:0016192;vesicle-mediated transport;3.51032267872264e-10!GO:0009259;ribonucleotide metabolic process;3.58279619542085e-10!GO:0003743;translation initiation factor activity;3.94560608166211e-10!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;3.96818784769335e-10!GO:0051169;nuclear transport;5.8309676115788e-10!GO:0003712;transcription cofactor activity;5.96852414662023e-10!GO:0006464;protein modification process;7.42837284962734e-10!GO:0016879;ligase activity, forming carbon-nitrogen bonds;7.42837284962734e-10!GO:0015986;ATP synthesis coupled proton transport;8.81226173632594e-10!GO:0015985;energy coupled proton transport, down electrochemical gradient;8.81226173632594e-10!GO:0006366;transcription from RNA polymerase II promoter;1.00650574146404e-09!GO:0019829;cation-transporting ATPase activity;1.00650574146404e-09!GO:0006164;purine nucleotide biosynthetic process;1.04430855508259e-09!GO:0006334;nucleosome assembly;1.17985144924306e-09!GO:0009150;purine ribonucleotide metabolic process;1.30280460940571e-09!GO:0005643;nuclear pore;1.38163019675092e-09!GO:0009108;coenzyme biosynthetic process;1.45098285423026e-09!GO:0008639;small protein conjugating enzyme activity;1.53431723846443e-09!GO:0009199;ribonucleoside triphosphate metabolic process;1.68811982535588e-09!GO:0009260;ribonucleotide biosynthetic process;2.2386280542068e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;2.37336575304538e-09!GO:0009144;purine nucleoside triphosphate metabolic process;2.37336575304538e-09!GO:0009142;nucleoside triphosphate biosynthetic process;2.37336575304538e-09!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.37336575304538e-09!GO:0009141;nucleoside triphosphate metabolic process;2.60309506424094e-09!GO:0019787;small conjugating protein ligase activity;2.68656538484309e-09!GO:0031497;chromatin assembly;2.9748048097921e-09!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;3.34901994349305e-09!GO:0009145;purine nucleoside triphosphate biosynthetic process;3.34901994349305e-09!GO:0006413;translational initiation;3.63237083431557e-09!GO:0004842;ubiquitin-protein ligase activity;4.17384918162839e-09!GO:0012501;programmed cell death;5.42047675510697e-09!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;5.61767224492024e-09!GO:0009152;purine ribonucleotide biosynthetic process;5.72480831541161e-09!GO:0006446;regulation of translational initiation;6.3799553745085e-09!GO:0015078;hydrogen ion transmembrane transporter activity;9.27862477477121e-09!GO:0006915;apoptosis;9.32499710461825e-09!GO:0006754;ATP biosynthetic process;9.44729699449052e-09!GO:0006753;nucleoside phosphate metabolic process;9.44729699449052e-09!GO:0046034;ATP metabolic process;9.68704927064089e-09!GO:0016568;chromatin modification;9.89083377123668e-09!GO:0009055;electron carrier activity;9.92799649521701e-09!GO:0050657;nucleic acid transport;1.02484350556791e-08!GO:0051236;establishment of RNA localization;1.02484350556791e-08!GO:0050658;RNA transport;1.02484350556791e-08!GO:0006403;RNA localization;1.39072522440023e-08!GO:0003697;single-stranded DNA binding;1.44957936172226e-08!GO:0008565;protein transporter activity;1.45520248490252e-08!GO:0043687;post-translational protein modification;2.03793821999841e-08!GO:0006461;protein complex assembly;2.21337261468056e-08!GO:0016779;nucleotidyltransferase activity;2.60442796843862e-08!GO:0065002;intracellular protein transport across a membrane;2.62615831260323e-08!GO:0009056;catabolic process;2.73335877945015e-08!GO:0006364;rRNA processing;2.86043973473903e-08!GO:0016072;rRNA metabolic process;3.90202152112344e-08!GO:0009117;nucleotide metabolic process;4.16581582698087e-08!GO:0016607;nuclear speck;5.05583270272757e-08!GO:0046930;pore complex;5.15838129788319e-08!GO:0009060;aerobic respiration;6.20201398864518e-08!GO:0016881;acid-amino acid ligase activity;6.71534546941643e-08!GO:0008219;cell death;7.09853412265147e-08!GO:0016265;death;7.09853412265147e-08!GO:0016469;proton-transporting two-sector ATPase complex;7.52425666528675e-08!GO:0006261;DNA-dependent DNA replication;7.52425666528675e-08!GO:0005793;ER-Golgi intermediate compartment;9.60984893870555e-08!GO:0007005;mitochondrion organization and biogenesis;1.06603149562189e-07!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;1.31180428292953e-07!GO:0017038;protein import;1.47505470581039e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.63576568125222e-07!GO:0032446;protein modification by small protein conjugation;1.7235616014186e-07!GO:0043566;structure-specific DNA binding;2.07406606772567e-07!GO:0006752;group transfer coenzyme metabolic process;2.1139655130026e-07!GO:0016787;hydrolase activity;2.46075089198001e-07!GO:0030532;small nuclear ribonucleoprotein complex;2.79023983779197e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;2.98998005542814e-07!GO:0004812;aminoacyl-tRNA ligase activity;2.98998005542814e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;2.98998005542814e-07!GO:0005667;transcription factor complex;3.09984242889939e-07!GO:0045259;proton-transporting ATP synthase complex;3.54377955507428e-07!GO:0016567;protein ubiquitination;4.12090390931856e-07!GO:0016740;transferase activity;8.52738844751473e-07!GO:0043038;amino acid activation;8.52738844751473e-07!GO:0006418;tRNA aminoacylation for protein translation;8.52738844751473e-07!GO:0043039;tRNA aminoacylation;8.52738844751473e-07!GO:0015077;monovalent inorganic cation transmembrane transporter activity;8.52738844751473e-07!GO:0051028;mRNA transport;8.74794476652724e-07!GO:0045333;cellular respiration;1.00953538874576e-06!GO:0005768;endosome;1.48409796306523e-06!GO:0050794;regulation of cellular process;1.63836953854586e-06!GO:0016564;transcription repressor activity;2.17611930831772e-06!GO:0043623;cellular protein complex assembly;2.40099588722775e-06!GO:0006099;tricarboxylic acid cycle;3.24830371877761e-06!GO:0046356;acetyl-CoA catabolic process;3.24830371877761e-06!GO:0016023;cytoplasmic membrane-bound vesicle;3.82421460941287e-06!GO:0000245;spliceosome assembly;3.93340187296378e-06!GO:0048475;coated membrane;4.11902105298899e-06!GO:0030117;membrane coat;4.11902105298899e-06!GO:0005839;proteasome core complex (sensu Eukaryota);4.6441164534388e-06!GO:0006084;acetyl-CoA metabolic process;5.19493643948287e-06!GO:0031988;membrane-bound vesicle;5.41429519905214e-06!GO:0005762;mitochondrial large ribosomal subunit;5.45428953305141e-06!GO:0000315;organellar large ribosomal subunit;5.45428953305141e-06!GO:0015630;microtubule cytoskeleton;5.88327635379972e-06!GO:0008033;tRNA processing;6.43002640407966e-06!GO:0000786;nucleosome;7.23736335906784e-06!GO:0031324;negative regulation of cellular metabolic process;8.53259352276824e-06!GO:0005819;spindle;9.71214702213951e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.16838919873453e-05!GO:0015992;proton transport;1.25821526713434e-05!GO:0003724;RNA helicase activity;1.44416698529005e-05!GO:0016563;transcription activator activity;1.46655879491186e-05!GO:0044431;Golgi apparatus part;1.47816817016945e-05!GO:0006818;hydrogen transport;1.63773536927388e-05!GO:0009165;nucleotide biosynthetic process;1.68219648078259e-05!GO:0051329;interphase of mitotic cell cycle;1.68219648078259e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;1.81730804047556e-05!GO:0008094;DNA-dependent ATPase activity;1.8205825942589e-05!GO:0051168;nuclear export;1.85016362593832e-05!GO:0003713;transcription coactivator activity;2.10367434062761e-05!GO:0004298;threonine endopeptidase activity;2.26592659905136e-05!GO:0003899;DNA-directed RNA polymerase activity;2.83735688534209e-05!GO:0051187;cofactor catabolic process;2.84253674982862e-05!GO:0006888;ER to Golgi vesicle-mediated transport;2.85898471055588e-05!GO:0030120;vesicle coat;3.06398387549379e-05!GO:0030662;coated vesicle membrane;3.06398387549379e-05!GO:0051325;interphase;3.06678381653815e-05!GO:0009109;coenzyme catabolic process;3.15364954815784e-05!GO:0051427;hormone receptor binding;3.22141143760421e-05!GO:0019222;regulation of metabolic process;3.42768098991191e-05!GO:0000775;chromosome, pericentric region;3.75437365147388e-05!GO:0031982;vesicle;3.90860886934594e-05!GO:0000314;organellar small ribosomal subunit;3.97636546627824e-05!GO:0005763;mitochondrial small ribosomal subunit;3.97636546627824e-05!GO:0005657;replication fork;4.22386060484411e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;4.25597068236327e-05!GO:0031410;cytoplasmic vesicle;4.44551235811125e-05!GO:0007051;spindle organization and biogenesis;4.76224560478788e-05!GO:0000151;ubiquitin ligase complex;4.88862946745361e-05!GO:0009892;negative regulation of metabolic process;5.00315893156189e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;5.01243154984548e-05!GO:0008654;phospholipid biosynthetic process;5.05131985030883e-05!GO:0006414;translational elongation;5.76772342507647e-05!GO:0016491;oxidoreductase activity;6.12421665132688e-05!GO:0042802;identical protein binding;6.12421665132688e-05!GO:0051170;nuclear import;6.58185586658743e-05!GO:0006091;generation of precursor metabolites and energy;7.28245630820118e-05!GO:0035257;nuclear hormone receptor binding;7.41984037860948e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;7.62762809880578e-05!GO:0003714;transcription corepressor activity;8.6696227391691e-05!GO:0003924;GTPase activity;8.90282827939309e-05!GO:0043067;regulation of programmed cell death;9.71678346389185e-05!GO:0000075;cell cycle checkpoint;9.79715861683218e-05!GO:0016741;transferase activity, transferring one-carbon groups;9.96438074289363e-05!GO:0042981;regulation of apoptosis;0.00010898005423164!GO:0006606;protein import into nucleus;0.000117536245321287!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000119689003767917!GO:0008168;methyltransferase activity;0.000123694010552321!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000132318108728046!GO:0015399;primary active transmembrane transporter activity;0.000132318108728046!GO:0006613;cotranslational protein targeting to membrane;0.000133975579822494!GO:0005773;vacuole;0.000134104417867807!GO:0051246;regulation of protein metabolic process;0.000142341544511417!GO:0008186;RNA-dependent ATPase activity;0.000151534188154285!GO:0005813;centrosome;0.000154591745608181!GO:0006401;RNA catabolic process;0.000155900744224071!GO:0045786;negative regulation of progression through cell cycle;0.000171643657224278!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00018857146118816!GO:0048523;negative regulation of cellular process;0.000188776143054569!GO:0044440;endosomal part;0.000213326227327077!GO:0010008;endosome membrane;0.000213326227327077!GO:0006402;mRNA catabolic process;0.000218591009655846!GO:0005770;late endosome;0.000229711155475233!GO:0003684;damaged DNA binding;0.000234875215940679!GO:0006793;phosphorus metabolic process;0.000234875215940679!GO:0006796;phosphate metabolic process;0.000234875215940679!GO:0005815;microtubule organizing center;0.00025253646732441!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000329935296085891!GO:0030867;rough endoplasmic reticulum membrane;0.000378053416104147!GO:0004004;ATP-dependent RNA helicase activity;0.000400739222793317!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000439364489378669!GO:0015980;energy derivation by oxidation of organic compounds;0.000442526912038688!GO:0016481;negative regulation of transcription;0.000463374803804883!GO:0005769;early endosome;0.000475251235771903!GO:0005798;Golgi-associated vesicle;0.000582637540725286!GO:0043021;ribonucleoprotein binding;0.000607372485312812!GO:0046474;glycerophospholipid biosynthetic process;0.000614964049875843!GO:0003682;chromatin binding;0.000619317044628783!GO:0006916;anti-apoptosis;0.000627391493988098!GO:0043069;negative regulation of programmed cell death;0.000646566592295322!GO:0016126;sterol biosynthetic process;0.000648407704764642!GO:0005048;signal sequence binding;0.000668931671634762!GO:0033116;ER-Golgi intermediate compartment membrane;0.000688335834155756!GO:0016310;phosphorylation;0.000703073732656824!GO:0000323;lytic vacuole;0.000715812738759711!GO:0005764;lysosome;0.000715812738759711!GO:0003746;translation elongation factor activity;0.000715812738759711!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.000715812738759711!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.000715812738759711!GO:0006839;mitochondrial transport;0.000732341372299871!GO:0003678;DNA helicase activity;0.000743135617611028!GO:0046489;phosphoinositide biosynthetic process;0.00075247385607807!GO:0043492;ATPase activity, coupled to movement of substances;0.000766371652777363!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000769275884571256!GO:0050789;regulation of biological process;0.000796141643897426!GO:0004518;nuclease activity;0.000805167923871757!GO:0043681;protein import into mitochondrion;0.000839897700130378!GO:0051789;response to protein stimulus;0.000843330026235824!GO:0006986;response to unfolded protein;0.000843330026235824!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000845263829903563!GO:0051087;chaperone binding;0.000862540608552484!GO:0043284;biopolymer biosynthetic process;0.00090493444798667!GO:0016853;isomerase activity;0.000936322215523251!GO:0000139;Golgi membrane;0.000936322215523251!GO:0006350;transcription;0.000982981600563257!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.000987659905264287!GO:0051920;peroxiredoxin activity;0.00102900805710616!GO:0005684;U2-dependent spliceosome;0.00103766972215082!GO:0032508;DNA duplex unwinding;0.00113057380496291!GO:0032392;DNA geometric change;0.00113057380496291!GO:0019899;enzyme binding;0.00115649227874878!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00115649227874878!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00115649227874878!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00115649227874878!GO:0048471;perinuclear region of cytoplasm;0.00117382919686302!GO:0006695;cholesterol biosynthetic process;0.00120633231140963!GO:0006302;double-strand break repair;0.00123303463999646!GO:0005525;GTP binding;0.00123886450719547!GO:0006405;RNA export from nucleus;0.00124053345676247!GO:0043066;negative regulation of apoptosis;0.00132727740911187!GO:0031323;regulation of cellular metabolic process;0.00133589896690091!GO:0003729;mRNA binding;0.00137489036324924!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00140688353160637!GO:0016363;nuclear matrix;0.00141526223442023!GO:0006352;transcription initiation;0.00142446782267438!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00145604548990358!GO:0005788;endoplasmic reticulum lumen;0.00152622063433219!GO:0003711;transcription elongation regulator activity;0.00156255634781299!GO:0005885;Arp2/3 protein complex;0.00156930570357645!GO:0046983;protein dimerization activity;0.00160563574072677!GO:0006270;DNA replication initiation;0.00180222900370244!GO:0048519;negative regulation of biological process;0.00187282621552277!GO:0006284;base-excision repair;0.00190458394325148!GO:0030176;integral to endoplasmic reticulum membrane;0.00196744470587828!GO:0046483;heterocycle metabolic process;0.00199385107854172!GO:0006383;transcription from RNA polymerase III promoter;0.00199395565737599!GO:0051252;regulation of RNA metabolic process;0.00205343857064461!GO:0008250;oligosaccharyl transferase complex;0.00214630015416125!GO:0031968;organelle outer membrane;0.00232054296292881!GO:0022890;inorganic cation transmembrane transporter activity;0.00232671997954519!GO:0044262;cellular carbohydrate metabolic process;0.00232847712626334!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00232847712626334!GO:0006268;DNA unwinding during replication;0.00236927281753545!GO:0031252;leading edge;0.00245212790732007!GO:0045454;cell redox homeostasis;0.00248610410321769!GO:0065009;regulation of a molecular function;0.00267394733835234!GO:0004527;exonuclease activity;0.0027400384645545!GO:0006612;protein targeting to membrane;0.00275120182567814!GO:0007264;small GTPase mediated signal transduction;0.00280499724639753!GO:0030880;RNA polymerase complex;0.00287868319598316!GO:0006611;protein export from nucleus;0.002881276424153!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.00291879298600236!GO:0001558;regulation of cell growth;0.00293307656051445!GO:0019867;outer membrane;0.00305071467306747!GO:0004576;oligosaccharyl transferase activity;0.00314503130191584!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0032330642719535!GO:0006650;glycerophospholipid metabolic process;0.00339350639612275!GO:0000059;protein import into nucleus, docking;0.00349072733560004!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.00355514649731751!GO:0003690;double-stranded DNA binding;0.00360953540530262!GO:0048487;beta-tubulin binding;0.00361799997881183!GO:0030384;phosphoinositide metabolic process;0.00362021089213251!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00365181441004017!GO:0015002;heme-copper terminal oxidase activity;0.00365181441004017!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00365181441004017!GO:0004129;cytochrome-c oxidase activity;0.00365181441004017!GO:0043488;regulation of mRNA stability;0.00368845197952358!GO:0043487;regulation of RNA stability;0.00368845197952358!GO:0005637;nuclear inner membrane;0.00377234111279549!GO:0006506;GPI anchor biosynthetic process;0.00379537512519546!GO:0005741;mitochondrial outer membrane;0.00419102932567216!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00463795860351161!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.004785775802621!GO:0005905;coated pit;0.00496579417308407!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.00496579417308407!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.00505277977819977!GO:0007006;mitochondrial membrane organization and biogenesis;0.00505277977819977!GO:0007088;regulation of mitosis;0.00527445249037514!GO:0035258;steroid hormone receptor binding;0.00530064380482762!GO:0043414;biopolymer methylation;0.00535501767357502!GO:0006733;oxidoreduction coenzyme metabolic process;0.0053686606925004!GO:0006595;polyamine metabolic process;0.00541347350705535!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.00569272552718018!GO:0006289;nucleotide-excision repair;0.00575148761211742!GO:0006730;one-carbon compound metabolic process;0.00579028496800316!GO:0046519;sphingoid metabolic process;0.00583600384476085!GO:0008287;protein serine/threonine phosphatase complex;0.00585911556329084!GO:0006672;ceramide metabolic process;0.00593171171238273!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00595626423048486!GO:0000428;DNA-directed RNA polymerase complex;0.00595626423048486!GO:0030137;COPI-coated vesicle;0.00595626423048486!GO:0042770;DNA damage response, signal transduction;0.00634021522109841!GO:0043596;nuclear replication fork;0.00641410583967007!GO:0006505;GPI anchor metabolic process;0.00686563819994808!GO:0046467;membrane lipid biosynthetic process;0.00705821169638612!GO:0005853;eukaryotic translation elongation factor 1 complex;0.00710289868817128!GO:0000123;histone acetyltransferase complex;0.00718003342530418!GO:0043189;H4/H2A histone acetyltransferase complex;0.00718003342530418!GO:0000209;protein polyubiquitination;0.00718003342530418!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00718003342530418!GO:0030663;COPI coated vesicle membrane;0.0072498124072019!GO:0030126;COPI vesicle coat;0.0072498124072019!GO:0008139;nuclear localization sequence binding;0.00725774058747146!GO:0016859;cis-trans isomerase activity;0.00741455835296872!GO:0008022;protein C-terminus binding;0.00752808108430588!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.00763101610740028!GO:0030133;transport vesicle;0.00764922640650557!GO:0019318;hexose metabolic process;0.0077421839077453!GO:0044452;nucleolar part;0.00779809402385305!GO:0006626;protein targeting to mitochondrion;0.00784093567029612!GO:0006891;intra-Golgi vesicle-mediated transport;0.00784093567029612!GO:0005774;vacuolar membrane;0.00786022698564814!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00801540348922076!GO:0008610;lipid biosynthetic process;0.0084696912483464!GO:0032561;guanyl ribonucleotide binding;0.00856600731632283!GO:0019001;guanyl nucleotide binding;0.00856600731632283!GO:0004532;exoribonuclease activity;0.00860526632952157!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.00860526632952157!GO:0030118;clathrin coat;0.00872446910467082!GO:0032259;methylation;0.00872446910467082!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.00873757578389687!GO:0010468;regulation of gene expression;0.00874037884884494!GO:0005669;transcription factor TFIID complex;0.008781322101935!GO:0016044;membrane organization and biogenesis;0.00885098440542498!GO:0005996;monosaccharide metabolic process;0.00887613511095375!GO:0000030;mannosyltransferase activity;0.00888420250566276!GO:0006310;DNA recombination;0.00890700130182225!GO:0008361;regulation of cell size;0.00911703298770403!GO:0031124;mRNA 3'-end processing;0.00991494670352138!GO:0006082;organic acid metabolic process;0.00998182648009141!GO:0016272;prefoldin complex;0.0100759476085609!GO:0000049;tRNA binding;0.0101821575776168!GO:0031570;DNA integrity checkpoint;0.010378040053287!GO:0007052;mitotic spindle organization and biogenesis;0.0107601195980788!GO:0016049;cell growth;0.0108058912755097!GO:0031072;heat shock protein binding;0.0109598492789266!GO:0008632;apoptotic program;0.0109898208387936!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0112202748218502!GO:0019752;carboxylic acid metabolic process;0.0113324167886598!GO:0047485;protein N-terminus binding;0.0114106955960634!GO:0008637;apoptotic mitochondrial changes;0.0114164984992687!GO:0030659;cytoplasmic vesicle membrane;0.0114975781409134!GO:0015631;tubulin binding;0.0116009208878022!GO:0007050;cell cycle arrest;0.0118367319191089!GO:0005869;dynactin complex;0.0127723420252209!GO:0000781;chromosome, telomeric region;0.0130003062068993!GO:0004860;protein kinase inhibitor activity;0.0130003062068993!GO:0005832;chaperonin-containing T-complex;0.0130407749265724!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.013317856071684!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.0133504736045044!GO:0019843;rRNA binding;0.0134310569568579!GO:0004003;ATP-dependent DNA helicase activity;0.0135752627701816!GO:0050662;coenzyme binding;0.0135932306744998!GO:0035267;NuA4 histone acetyltransferase complex;0.0140398988603655!GO:0006769;nicotinamide metabolic process;0.0141363553929809!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0142187104375679!GO:0040029;regulation of gene expression, epigenetic;0.0144502507889004!GO:0045045;secretory pathway;0.0146707040361656!GO:0006497;protein amino acid lipidation;0.01470773503371!GO:0005791;rough endoplasmic reticulum;0.0149411710633467!GO:0008601;protein phosphatase type 2A regulator activity;0.0155054432491219!GO:0005874;microtubule;0.0155140781637316!GO:0018196;peptidyl-asparagine modification;0.0155456849661149!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0155456849661149!GO:0000082;G1/S transition of mitotic cell cycle;0.0158462648477431!GO:0048500;signal recognition particle;0.0158462648477431!GO:0006767;water-soluble vitamin metabolic process;0.0160103492762634!GO:0044437;vacuolar part;0.0162190536573341!GO:0006509;membrane protein ectodomain proteolysis;0.0164071507106892!GO:0033619;membrane protein proteolysis;0.0164071507106892!GO:0044433;cytoplasmic vesicle part;0.0169160374725326!GO:0000776;kinetochore;0.017040841745514!GO:0007093;mitotic cell cycle checkpoint;0.0176348428229529!GO:0043022;ribosome binding;0.017673720543101!GO:0030658;transport vesicle membrane;0.0177337224006901!GO:0007040;lysosome organization and biogenesis;0.0178120088041359!GO:0006740;NADPH regeneration;0.0178561117659303!GO:0006098;pentose-phosphate shunt;0.0178561117659303!GO:0040008;regulation of growth;0.0184833984671405!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0188054341725078!GO:0032774;RNA biosynthetic process;0.0194582439571841!GO:0046966;thyroid hormone receptor binding;0.0198893201912911!GO:0007346;regulation of progression through mitotic cell cycle;0.0200821591501399!GO:0016251;general RNA polymerase II transcription factor activity;0.0204083009655844!GO:0045792;negative regulation of cell size;0.0206109737176859!GO:0006338;chromatin remodeling;0.0206200445468446!GO:0051052;regulation of DNA metabolic process;0.0206934722129028!GO:0009303;rRNA transcription;0.0214169662987727!GO:0030119;AP-type membrane coat adaptor complex;0.0215028720865546!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0217613082422982!GO:0006351;transcription, DNA-dependent;0.0219572207637871!GO:0008312;7S RNA binding;0.0228368981861811!GO:0031123;RNA 3'-end processing;0.0230277733655345!GO:0006275;regulation of DNA replication;0.0232136568798624!GO:0000077;DNA damage checkpoint;0.0232939815533082!GO:0046426;negative regulation of JAK-STAT cascade;0.0233174669390844!GO:0005777;peroxisome;0.0233964379566394!GO:0042579;microbody;0.0233964379566394!GO:0030132;clathrin coat of coated pit;0.0242139642076171!GO:0008180;signalosome;0.0246049684609288!GO:0000086;G2/M transition of mitotic cell cycle;0.0258068196361365!GO:0008276;protein methyltransferase activity;0.0260298353656239!GO:0032039;integrator complex;0.0263410714770422!GO:0000096;sulfur amino acid metabolic process;0.0264765263468224!GO:0008538;proteasome activator activity;0.0271185283320913!GO:0007021;tubulin folding;0.0271296794259152!GO:0001836;release of cytochrome c from mitochondria;0.0271384977539764!GO:0009112;nucleobase metabolic process;0.0272312967037921!GO:0030308;negative regulation of cell growth;0.0272629410439616!GO:0008408;3'-5' exonuclease activity;0.0275238597891456!GO:0045892;negative regulation of transcription, DNA-dependent;0.0286208815522759!GO:0007033;vacuole organization and biogenesis;0.0288896419842074!GO:0030131;clathrin adaptor complex;0.0296393217785533!GO:0031902;late endosome membrane;0.0298518846708057!GO:0016584;nucleosome positioning;0.0299788589247222!GO:0008286;insulin receptor signaling pathway;0.0300567260940752!GO:0043601;nuclear replisome;0.0306139427894616!GO:0030894;replisome;0.0306139427894616!GO:0019362;pyridine nucleotide metabolic process;0.0306828032468481!GO:0032200;telomere organization and biogenesis;0.0310074581920712!GO:0000723;telomere maintenance;0.0310074581920712!GO:0003677;DNA binding;0.0311643167421318!GO:0006144;purine base metabolic process;0.0314898732325972!GO:0051540;metal cluster binding;0.0320698896207258!GO:0051536;iron-sulfur cluster binding;0.0320698896207258!GO:0005784;translocon complex;0.0321788796464843!GO:0050178;phenylpyruvate tautomerase activity;0.0323817036051555!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0324841386246527!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0327780812110244!GO:0045047;protein targeting to ER;0.0327780812110244!GO:0019887;protein kinase regulator activity;0.0329652959465227!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0330409172208008!GO:0009304;tRNA transcription;0.0335258699558941!GO:0006778;porphyrin metabolic process;0.0335258699558941!GO:0033013;tetrapyrrole metabolic process;0.0335258699558941!GO:0006378;mRNA polyadenylation;0.0338614156741905!GO:0004536;deoxyribonuclease activity;0.0341052691747056!GO:0000175;3'-5'-exoribonuclease activity;0.0341055368624154!GO:0042158;lipoprotein biosynthetic process;0.034145631404567!GO:0044454;nuclear chromosome part;0.034145631404567!GO:0000287;magnesium ion binding;0.034145631404567!GO:0042987;amyloid precursor protein catabolic process;0.0342916946615869!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0353230962781244!GO:0051287;NAD binding;0.0355285408587735!GO:0004549;tRNA-specific ribonuclease activity;0.0355285408587735!GO:0051539;4 iron, 4 sulfur cluster binding;0.0357707600168703!GO:0007059;chromosome segregation;0.0359292845097035!GO:0048037;cofactor binding;0.0362612715719956!GO:0030660;Golgi-associated vesicle membrane;0.0363313239283796!GO:0003887;DNA-directed DNA polymerase activity;0.0363313239283796!GO:0006066;alcohol metabolic process;0.0369357198708419!GO:0030149;sphingolipid catabolic process;0.0369357198708419!GO:0030518;steroid hormone receptor signaling pathway;0.0370335891913678!GO:0000163;protein phosphatase type 1 activity;0.0370719738436352!GO:0006376;mRNA splice site selection;0.0375450379037532!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0375450379037532!GO:0000922;spindle pole;0.0375450379037532!GO:0006308;DNA catabolic process;0.0376751026281521!GO:0012506;vesicle membrane;0.0377767780463306!GO:0004448;isocitrate dehydrogenase activity;0.0377767780463306!GO:0031371;ubiquitin conjugating enzyme complex;0.0379941440701104!GO:0006354;RNA elongation;0.0382413074333569!GO:0000792;heterochromatin;0.0382944921030446!GO:0045941;positive regulation of transcription;0.0384260996552253!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0385281242602463!GO:0030911;TPR domain binding;0.0385737075200774!GO:0017166;vinculin binding;0.0385737075200774!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.03866659482003!GO:0016791;phosphoric monoester hydrolase activity;0.0393125858668179!GO:0006406;mRNA export from nucleus;0.0399748682466356!GO:0000178;exosome (RNase complex);0.0400986644869396!GO:0019207;kinase regulator activity;0.0412599994551327!GO:0000228;nuclear chromosome;0.0412599994551327!GO:0045936;negative regulation of phosphate metabolic process;0.0414211737684696!GO:0004523;ribonuclease H activity;0.0421416738431798!GO:0000118;histone deacetylase complex;0.0425613020919062!GO:0031628;opioid receptor binding;0.0429080156424587!GO:0031852;mu-type opioid receptor binding;0.0429080156424587!GO:0045449;regulation of transcription;0.0432081302283184!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.044340789636869!GO:0007017;microtubule-based process;0.0443555049086086!GO:0050790;regulation of catalytic activity;0.0447017862801722!GO:0019210;kinase inhibitor activity;0.0450397403328427!GO:0051059;NF-kappaB binding;0.0454027994754468!GO:0042532;negative regulation of tyrosine phosphorylation of STAT protein;0.0462369494814855!GO:0042518;negative regulation of tyrosine phosphorylation of Stat3 protein;0.0462369494814855!GO:0050732;negative regulation of peptidyl-tyrosine phosphorylation;0.0462369494814855!GO:0045926;negative regulation of growth;0.046562971232816!GO:0030134;ER to Golgi transport vesicle;0.0466043999933162!GO:0006367;transcription initiation from RNA polymerase II promoter;0.046659621392568!GO:0005876;spindle microtubule;0.047862357527963!GO:0016717;oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water;0.0482095357234877!GO:0005765;lysosomal membrane;0.0482529732918464!GO:0006779;porphyrin biosynthetic process;0.048810260820332!GO:0033014;tetrapyrrole biosynthetic process;0.048810260820332!GO:0000159;protein phosphatase type 2A complex;0.0490721397124751!GO:0004526;ribonuclease P activity;0.0498922011651672
|sample_id=13163
|sample_note=
|sample_sex=female
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=breast
|time=00hr00min
|timecourse=MCF7_response_to_EGF,MCF7_response_to_HRG
|top_motifs=NFY{A,B,C}:2.25627711736;MYOD1:2.14072059027;PBX1:1.98358019162;SNAI1..3:1.89468129673;ZEB1:1.72219074815;POU2F1..3:1.56265137745;XCPE1{core}:1.34864081479;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.30853148682;LMO2:1.30076945423;NANOG:1.28723314418;FOX{F1,F2,J1}:1.21923899467;HOXA9_MEIS1:1.1372669432;ONECUT1,2:1.12573322782;ELK1,4_GABP{A,B1}:1.07653592829;SP1:1.07596191218;LHX3,4:1.03002307607;LEF1_TCF7_TCF7L1,2:1.00157457187;NRF1:0.961322472094;GFI1:0.907467066402;FOXQ1:0.869146722524;PPARG:0.865085648742;STAT1,3:0.859104053448;IKZF1:0.84021936096;YY1:0.776304411583;bHLH_family:0.753338968573;SOX{8,9,10}:0.736927122429;E2F1..5:0.699847785487;TFDP1:0.694964954067;ESRRA:0.67560895559;NR5A1,2:0.657125552338;EGR1..3:0.601313998393;MYB:0.579779500539;TFAP2{A,C}:0.574872349029;ARID5B:0.560331890908;VSX1,2:0.536195553556;HAND1,2:0.436538693583;MED-1{core}:0.398828443912;HIF1A:0.380754163689;ZNF143:0.360842970941;ESR1:0.354999511246;BREu{core}:0.324113491037;FOXN1:0.297854956844;FOXL1:0.280051660903;HOX{A5,B5}:0.267139520849;ZNF148:0.250189079367;RFX1:0.23425393054;HES1:0.229089021794;TBP:0.21421218785;ATF2:0.198637096705;SREBF1,2:0.183228842536;FOX{D1,D2}:0.181056250037;FOXA2:0.164740890584;AR:0.162586655239;RFX2..5_RFXANK_RFXAP:0.160980638536;PAX2:0.15106803048;TP53:0.147383214099;HNF1A:0.136883579147;TFCP2:0.131861205983;RXRA_VDR{dimer}:0.123872239685;ALX1:0.113458618355;HOX{A6,A7,B6,B7}:0.102247856619;OCT4_SOX2{dimer}:0.0925725928739;TEAD1:0.0698896580294;ZNF423:0.067993929674;FOS_FOS{B,L1}_JUN{B,D}:0.0629150425999;PAX1,9:0.0529902499473;NFIL3:0.049739800162;CDX1,2,4:0.030449274606;PAX5:0.0138166863193;EBF1:0.0118063007653;ATF6:0.00528317216995;REST:-0.00804614294254;TBX4,5:-0.0177934833139;TFAP4:-0.0249532903503;STAT5{A,B}:-0.0276934445581;HMX1:-0.0546053637455;HNF4A_NR2F1,2:-0.0584751345792;MTF1:-0.0592103520519;ADNP_IRX_SIX_ZHX:-0.10440617948;RBPJ:-0.111529427015;TLX2:-0.120102550147;FOSL2:-0.122511860407;GTF2A1,2:-0.136585738248;NFE2L2:-0.145945169392;TFAP2B:-0.148772564339;NKX2-3_NKX2-5:-0.157734178034;HIC1:-0.16018389766;FOX{I1,J2}:-0.182563280273;TLX1..3_NFIC{dimer}:-0.19380300743;NFE2:-0.201761415177;NKX6-1,2:-0.209462971053;ELF1,2,4:-0.215331039124;TOPORS:-0.221284628532;CDC5L:-0.23153120477;BACH2:-0.233319650962;RORA:-0.264843761674;MEF2{A,B,C,D}:-0.268782740119;SOX5:-0.285733472361;GATA6:-0.306244411967;ATF5_CREB3:-0.307201108574;PITX1..3:-0.311315586632;NR1H4:-0.322757623455;MAFB:-0.323856509016;POU1F1:-0.327316518356;GZF1:-0.335082685566;RREB1:-0.339306039393;JUN:-0.339311831708;NFKB1_REL_RELA:-0.34797048762;ZIC1..3:-0.358258202671;CREB1:-0.379565746328;ZFP161:-0.381595407219;UFEwm:-0.408345008162;GTF2I:-0.445620177602;SOX2:-0.482028321891;SPIB:-0.483555938581;DBP:-0.496659093201;POU6F1:-0.538596815392;PAX6:-0.539710199223;ZBTB6:-0.554204503847;EN1,2:-0.560794932804;HLF:-0.574167623685;CRX:-0.575584921224;FOXM1:-0.58024003119;NFE2L1:-0.587358299212;ATF4:-0.590104559301;ZNF384:-0.597812956207;EVI1:-0.610521307659;HSF1,2:-0.614562036533;PATZ1:-0.623232250926;TAL1_TCF{3,4,12}:-0.627439609955;RUNX1..3:-0.629228294285;EP300:-0.647388024374;CUX2:-0.657115506487;NHLH1,2:-0.66521860006;POU3F1..4:-0.672388414882;GFI1B:-0.699688133564;MYFfamily:-0.717324221794;ALX4:-0.736379886677;MTE{core}:-0.741008132835;MAZ:-0.742684469383;ETS1,2:-0.769352286865;TGIF1:-0.770999241065;SRF:-0.786996288703;CEBPA,B_DDIT3:-0.795134687266;SPI1:-0.799220572592;PRRX1,2:-0.801629400171;HOX{A4,D4}:-0.803032000513;NKX3-2:-0.820637205819;ZBTB16:-0.824680135223;PAX4:-0.841747891563;STAT2,4,6:-0.848270144368;NKX2-2,8:-0.858985851512;IRF7:-0.866750830644;FOXP3:-0.866767011504;SOX17:-0.869047048701;NANOG{mouse}:-0.872924588026;IKZF2:-0.886704765955;PDX1:-0.908743006738;PAX3,7:-0.946822983692;NR6A1:-0.983454356868;NFATC1..3:-0.988239863411;PAX8:-0.990648934975;TEF:-0.991859867946;IRF1,2:-1.01944958338;FOXO1,3,4:-1.03289489013;FOXD3:-1.0390539938;DMAP1_NCOR{1,2}_SMARC:-1.04848482827;POU5F1:-1.07476198088;AHR_ARNT_ARNT2:-1.07501884586;SMAD1..7,9:-1.09390747416;BPTF:-1.16947365915;NFIX:-1.21823540999;KLF4:-1.29083374087;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.29384477053;ZNF238:-1.30080351645;HBP1_HMGB_SSRP1_UBTF:-1.30443146511;MZF1:-1.31596478553;NKX3-1:-1.31910043876;XBP1:-1.32068711976;NR3C1:-1.40690961063;GATA4:-1.42756941019;AIRE:-1.46161344386;FOXP1:-1.48877261445;GLI1..3:-1.49849720303;SPZ1:-1.65004159502;MYBL2:-1.70370166447;NKX2-1,4:-1.70457238461;GCM1,2:-1.72530339812;PRDM1:-1.77494354179;T:-1.90182248766;RXR{A,B,G}:-2.01157683768;HMGA1,2:-2.08905435235
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:13163-141B4;search_select_hide=table117:FF:13163-141B4
}}
}}

Latest revision as of 18:52, 4 June 2020

Name:MCF7 breast cancer cell line response to EGF1
Species:Human (Homo sapiens)
Library ID:CNhs12703
Sample type:time courses
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuebreast
dev stageNA
sexfemale
ageNA
cell typemammary gland epithelial cell
cell lineMCF7
companyNA
collaborationMariko Okada Hatakeyama (RIKEN RCAI)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typeNA
extraction protocol (Details)Repurified by minelute

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005157
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12703 CAGE DRX008593 DRR009465
Accession ID Hg19

Library idBAMCTSS
CNhs12703 DRZ000890 DRZ002275
Accession ID Hg38

Library idBAMCTSS
CNhs12703 DRZ012240 DRZ013625
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005157
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10063.GATCAG sRNA-Seq DRX037288 DRR041654
Accession ID Hg19

Library idBAMCTSS
SRhi10063.GATCAG DRZ007296


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.0113
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.231
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.185
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar1.259
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.406
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.567
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0.269
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.896
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0.647
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.269
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.579
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0.0636
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12703

Jaspar motifP-value
MA0002.20.0656
MA0003.10.701
MA0004.10.0259
MA0006.10.648
MA0007.10.796
MA0009.10.595
MA0014.10.073
MA0017.10.229
MA0018.20.421
MA0019.10.0673
MA0024.19.00929e-4
MA0025.10.111
MA0027.10.864
MA0028.12.49865e-5
MA0029.10.0779
MA0030.10.0479
MA0031.10.168
MA0035.20.165
MA0038.18.42852e-5
MA0039.25.60138e-4
MA0040.10.745
MA0041.10.325
MA0042.10.751
MA0043.10.124
MA0046.10.0976
MA0047.20.0245
MA0048.10.347
MA0050.11.16822e-4
MA0051.10.0175
MA0052.10.786
MA0055.10.0176
MA0057.10.951
MA0058.10.0136
MA0059.10.618
MA0060.12.98229e-32
MA0061.10.0018
MA0062.22.24424e-7
MA0065.20.738
MA0066.10.58
MA0067.10.083
MA0068.10.66
MA0069.10.663
MA0070.10.035
MA0071.10.879
MA0072.10.415
MA0073.10.981
MA0074.10.932
MA0076.12.2941e-5
MA0077.10.543
MA0078.10.265
MA0079.20.391
MA0080.27.31334e-6
MA0081.10.775
MA0083.10.58
MA0084.10.397
MA0087.10.682
MA0088.10.631
MA0090.10.813
MA0091.10.126
MA0092.10.526
MA0093.10.0161
MA0099.20.109
MA0100.10.189
MA0101.10.19
MA0102.20.00296
MA0103.15.03091e-6
MA0104.20.103
MA0105.14.64729e-5
MA0106.10.251
MA0107.10.0523
MA0108.20.00583
MA0111.10.416
MA0112.20.812
MA0113.10.237
MA0114.10.94
MA0115.10.701
MA0116.10.00399
MA0117.10.267
MA0119.10.103
MA0122.10.147
MA0124.10.129
MA0125.16.99582e-4
MA0131.10.0669
MA0135.10.0371
MA0136.10.0946
MA0137.20.343
MA0138.20.362
MA0139.10.409
MA0140.10.354
MA0141.10.474
MA0142.10.995
MA0143.10.0655
MA0144.10.114
MA0145.10.984
MA0146.10.147
MA0147.10.171
MA0148.10.0955
MA0149.10.136
MA0150.10.0362
MA0152.10.45
MA0153.10.196
MA0154.10.0701
MA0155.10.754
MA0156.10.42
MA0157.10.545
MA0159.10.568
MA0160.10.785
MA0162.10.458
MA0163.10.00351
MA0164.10.699
MA0258.10.797
MA0259.10.0631



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12703

Novel motifP-value
10.132
100.545
1000.668
1010.09
1020.263
1030.102
1040.933
1050.346
1060.0153
1070.0313
1080.833
1090.0507
110.441
1100.688
1110.0163
1120.2
1130.0976
1140.0445
1150.146
1160.338
1170.423
1180.605
1190.38
120.482
1200.569
1210.891
1220.169
1230.0115
1240.34
1250.345
1260.815
1270.69
1280.0159
1290.945
130.494
1300.00576
1310.221
1320.511
1330.00803
1340.0719
1350.356
1360.00139
1370.0976
1380.15
1390.133
140.875
1400.0583
1410.834
1420.253
1430.0932
1440.413
1450.163
1460.57
1470.906
1480.0013
1490.158
150.369
1500.79
1510.0488
1520.524
1530.105
1540.195
1550.0804
1560.899
1570.271
1580.292
1590.885
160.482
1600.805
1610.611
1620.943
1630.707
1640.426
1650.178
1660.0752
1670.605
1680.25
1690.701
170.655
180.0802
190.312
20.553
200.392
210.217
220.598
230.00221
240.976
250.802
260.438
270.689
280.911
290.714
30.0659
300.412
310.524
320.091
330.3
340.274
350.0343
360.394
370.17
380.933
390.333
40.379
400.257
410.22
420.301
430.0841
440.283
450.766
460.169
470.667
480.974
490.128
50.178
500.515
510.76
520.318
530.112
540.582
550.409
560.701
570.306
580.405
590.539
60.716
600.0461
610.548
620.142
630.204
640.807
650.158
660.00301
670.495
680.737
690.327
70.939
700.0908
710.414
720.519
730.98
740.0223
750.823
760.69
770.215
780.96
790.262
80.471
800.0681
810.111
820.287
830.167
840.654
850.0712
860.572
870.00198
880.975
890.0863
90.181
901.81959e-5
910.0698
920.0433
930.578
940.122
950.0157
960.171
970.898
980.411
990.956



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12703


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
7 (disease of anatomical entity)
5093 (thoracic cancer)
305 (carcinoma)
299 (adenocarcinoma)
1612 (breast cancer)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000310 (breast)
0002100 (trunk)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)
0009569 (subdivision of trunk)
0001443 (chest)
0000915 (thoracic segment of trunk)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000350 (experimentally modified sample)
0000344 (0 minute sample)
0000330 (EGF1 treatment sample)
0100093 (MCF-7 cell sample)
0100297 (carcinoma cell line sample)
0101912 (breast adenocarcinoma cell line sample)
0101120 (epithelial cell line sample)
0100816 (breast cell line sample)
0100167 (adenocarcinoma cell line sample)
0100356 (breast cancer cell line sample)
0000426 (human MCF7 breast cancer cell line 0min after EGF1 treatment sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA

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