FFCP PHASE1:Hg19::chr12:53207890..53207907,-: Difference between revisions
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(Created page with "{{FFCP
|id=chr12:53207890..53207907,-
|short_description=p1@KRT4
|description=CAGE_peak_1_at_KRT4_5end
|association_with_transcript=0bp_to_ENST00000548097,ENST00000552668,...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=3851 | |EntrezGene=3851 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6441 | |HGNC=6441 | ||
|TSSclassifier=strong | |||
|UniProt=F8VX05,F8VZR6,B4DRS2,F8VS64 | |UniProt=F8VX05,F8VZR6,B4DRS2,F8VS64 | ||
|association_with_transcript=0bp_to_ENST00000548097,ENST00000552668,NM_002272_5end | |||
|cluster_id=chr12:53207890..53207907,- | |||
|coexpression_cluster_id=C60 | |||
|description=CAGE_peak_1_at_KRT4_5end | |||
|id=chr12:53207890..53207907,- | |||
|ontology_enrichment_celltype=CL:0002076!2.48e-25!43;CL:0000223!1.48e-18!59;CL:0000066!9.43e-14!254;CL:0002368!1.54e-13!13;CL:0002251!1.18e-11!21;CL:0002202!1.52e-08!9;CL:0002632!1.52e-08!9 | |||
|ontology_enrichment_celltype_v019=CL:0002368;2.57e-20;13!CL:0002076;9.66e-16;42!CL:0002202;1.23e-12;9!CL:0002632;1.23e-12;9!CL:0000244;2.71e-09;4!CL:0000731;2.71e-09;4!CL:0002328;3.72e-08;3!CL:0002623;7.92e-08;3!CL:0000307;9.80e-08;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002076,1.86e-21,42;CL:0002368,2.52e-20,13;CL:0000223,1.71e-15,58;CL:0002202,1.16e-12,9;CL:0002632,1.16e-12,9;CL:0000244,2.57e-09,4;CL:0000731,2.57e-09,4;CL:0000066,2.69e-08,253;CL:0002328,3.72e-08,3;CL:0002623,7.83e-08,3;CL:0000068,9.03e-08,3;CL:0000069,9.03e-08,3;CL:0000307,9.03e-08,3;CL:0000377,9.03e-08,3 | |||
|ontology_enrichment_development_v019=CL:0000223;1.17e-08;58!CL:0000377;9.80e-08;3!UBERON:0009847;3.10e-07;3!UBERON:0003353;3.10e-07;3 | |||
|ontology_enrichment_disease=DOID:1749!2.95e-11!14;DOID:305!1.20e-09!106 | |||
|ontology_enrichment_disease_v019=DOID:1749;7.85e-08;14 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,7.85e-08,14 | |||
|ontology_enrichment_uberon=UBERON:0004119!1.03e-23!169;UBERON:0000925!1.03e-23!169;UBERON:0006595!1.03e-23!169;UBERON:0001004!8.50e-19!72;UBERON:0001007!1.48e-17!155;UBERON:0001555!1.48e-17!155;UBERON:0007026!1.48e-17!155;UBERON:0000065!1.33e-16!53;UBERON:0004921!9.62e-16!129;UBERON:0004185!9.62e-16!129;UBERON:0000077!1.29e-15!130;UBERON:0000161!9.76e-14!35;UBERON:0001041!8.14e-12!98;UBERON:0005911!3.79e-11!82;UBERON:0005178!7.56e-11!34;UBERON:0002224!7.56e-11!34;UBERON:0005181!2.18e-10!35;UBERON:0000072!2.39e-10!46;UBERON:0008947!1.31e-09!38;UBERON:0003258!1.31e-09!38;UBERON:0003102!4.25e-09!95;UBERON:0007196!1.64e-08!14;UBERON:0001558!1.64e-08!14;UBERON:0000974!1.66e-08!10;UBERON:0000166!3.56e-08!21;UBERON:0000344!7.09e-08!12;UBERON:0000915!1.11e-07!52;UBERON:0005153!1.12e-07!37;UBERON:0000365!1.58e-07!5;UBERON:0000162!4.53e-07!14;UBERON:0001353!4.53e-07!14;UBERON:0000163!4.53e-07!14;UBERON:0006866!4.53e-07!14;UBERON:0000164!4.53e-07!14;UBERON:0000931!4.53e-07!14;UBERON:0005157!9.66e-07!51 | |||
|ontology_enrichment_uberon_v019=UBERON:0005178;1.48e-12;34!UBERON:0002224;1.48e-12;34!UBERON:0007196;4.88e-12;15!UBERON:0001558;4.88e-12;15!UBERON:0005181;8.42e-12;35!UBERON:0003126;7.90e-09;7!UBERON:0001005;7.90e-09;7!UBERON:0000065;1.35e-08;44!UBERON:0004815;3.72e-08;3!UBERON:0002031;3.72e-08;3!UBERON:0001041;1.13e-07;14!UBERON:0000365;1.96e-07;5!UBERON:0002048;3.36e-07;22!UBERON:0000117;3.36e-07;22!UBERON:0000171;3.36e-07;22!UBERON:0000170;3.36e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,4.71e-20,160;UBERON:0000925,4.71e-20,160;UBERON:0006595,4.71e-20,160;UBERON:0001004,4.70e-18,74;UBERON:0000065,1.40e-17,54;UBERON:0004921,3.19e-16,118;UBERON:0005178,1.57e-14,34;UBERON:0002224,1.57e-14,34;UBERON:0001007,2.48e-14,145;UBERON:0001555,2.48e-14,145;UBERON:0007026,2.48e-14,145;UBERON:0005181,5.39e-14,35;UBERON:0001041,3.78e-13,87;UBERON:0007196,4.65e-12,15;UBERON:0001558,4.65e-12,15;UBERON:0000161,2.38e-11,36;UBERON:0005911,9.67e-10,82;UBERON:0000072,1.59e-09,47;UBERON:0008947,3.28e-09,38;UBERON:0003258,3.28e-09,38;UBERON:0005153,5.14e-09,37;UBERON:0003126,7.45e-09,7;UBERON:0001005,7.45e-09,7;UBERON:0005157,1.02e-08,47;UBERON:0004815,3.72e-08,3;UBERON:0002031,3.72e-08,3;UBERON:0000915,4.17e-08,52;UBERON:0003408,6.58e-08,10;UBERON:0006562,1.09e-07,11;UBERON:0000365,1.87e-07,5;UBERON:0002048,3.34e-07,22;UBERON:0000117,3.34e-07,22;UBERON:0000171,3.34e-07,22;UBERON:0000170,3.34e-07,22;UBERON:0005597,3.34e-07,22;UBERON:0000118,3.34e-07,22;UBERON:0000162,7.37e-07,14;UBERON:0001353,7.37e-07,14;UBERON:0000163,7.37e-07,14;UBERON:0006866,7.37e-07,14;UBERON:0000164,7.37e-07,14;UBERON:0000931,7.37e-07,14 | |||
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| ||
|short_description=p1@KRT4 | |||
}} | }} |
Latest revision as of 00:51, 19 September 2015
Short description: | p1@KRT4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_KRT4_5end |
Coexpression cluster: | C60_esophagus_tonsil_throat_tongue_uterus_cervix_cervical |
Association with transcript: | 0bp_to_ENST00000548097, ENST00000552668, NM_002272_5end |
EntrezGene: | KRT4 |
HGNC: | 6441 |
UniProt: | F8VX05F8VZR6B4DRS2F8VS64 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endo-epithelial cell | 1.86e-21 | 42 |
respiratory epithelial cell | 2.52e-20 | 13 |
endodermal cell | 1.71e-15 | 58 |
epithelial cell of tracheobronchial tree | 1.16e-12 | 9 |
epithelial cell of lower respiratory tract | 1.16e-12 | 9 |
transitional epithelial cell | 2.57e-09 | 4 |
urothelial cell | 2.57e-09 | 4 |
epithelial cell | 2.69e-08 | 253 |
bronchial epithelial cell | 3.72e-08 | 3 |
acinar cell of salivary gland | 7.83e-08 | 3 |
duct epithelial cell | 9.03e-08 | 3 |
branched duct epithelial cell | 9.03e-08 | 3 |
tracheal epithelial cell | 9.03e-08 | 3 |
tracheoblast | 9.03e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 7.85e-08 | 14 |