FFCP PHASE1:Hg19::chr6:30295154..30295161,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=56658 | |EntrezGene=56658 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10065 | |HGNC=10065 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=118bp_to_ENST00000376659_5end | |association_with_transcript=118bp_to_ENST00000376659_5end | ||
|cluster_id=chr6:30295154..30295161,+ | |||
|coexpression_cluster_id=C2 | |||
|description=CAGE_peak_16_at_TRIM39_5end | |description=CAGE_peak_16_at_TRIM39_5end | ||
|id=chr6:30295154..30295161,+ | |id=chr6:30295154..30295161,+ | ||
|ontology_enrichment_celltype=CL:0000738!7.03e-26!140;CL:0000766!2.57e-21!76;CL:0002057!2.48e-20!42;CL:0000037!3.54e-19!172;CL:0000566!3.54e-19!172;CL:0000860!1.18e-18!45;CL:0002032!7.58e-18!165;CL:0000837!7.58e-18!165;CL:0000988!1.43e-17!182;CL:0002031!2.17e-17!124;CL:0002087!3.59e-17!119;CL:0000094!1.60e-14!8;CL:0000557!4.64e-14!71;CL:0000763!1.36e-13!112;CL:0000049!1.36e-13!112;CL:0002009!9.12e-13!65;CL:0000839!9.29e-13!70;CL:0002194!9.80e-12!63;CL:0000576!9.80e-12!63;CL:0000040!9.80e-12!63;CL:0000559!9.80e-12!63;CL:0000081!2.42e-10!11;CL:0000623!6.21e-10!3;CL:0000825!6.21e-10!3;CL:0000624!1.10e-08!6;CL:0000771!4.65e-08!2 | |ontology_enrichment_celltype=CL:0000738!7.03e-26!140;CL:0000766!2.57e-21!76;CL:0002057!2.48e-20!42;CL:0000037!3.54e-19!172;CL:0000566!3.54e-19!172;CL:0000860!1.18e-18!45;CL:0002032!7.58e-18!165;CL:0000837!7.58e-18!165;CL:0000988!1.43e-17!182;CL:0002031!2.17e-17!124;CL:0002087!3.59e-17!119;CL:0000094!1.60e-14!8;CL:0000557!4.64e-14!71;CL:0000763!1.36e-13!112;CL:0000049!1.36e-13!112;CL:0002009!9.12e-13!65;CL:0000839!9.29e-13!70;CL:0002194!9.80e-12!63;CL:0000576!9.80e-12!63;CL:0000040!9.80e-12!63;CL:0000559!9.80e-12!63;CL:0000081!2.42e-10!11;CL:0000623!6.21e-10!3;CL:0000825!6.21e-10!3;CL:0000624!1.10e-08!6;CL:0000771!4.65e-08!2 | ||
|ontology_enrichment_celltype_v019=CL:0000771;1.11e-34;2!CL:0000094;1.04e-33;8!CL:0000081;1.19e-24;11!CL:0000775;4.60e-23;3!CL:0000860;4.98e-23;33!CL:0002057;4.98e-23;33!CL:0000473;9.33e-19;39!CL:0000234;9.33e-19;39!CL:0000766;5.63e-15;69!CL:0000576;3.41e-09;48!CL:0000763;1.84e-08;100 | |||
|ontology_enrichment_celltype_v019_2=CL:0000771,1.11e-34,2;CL:0000094,8.81e-34,8;CL:0000766,1.37e-26,72;CL:0000081,1.05e-24,11;CL:0000775,3.68e-23,3;CL:0000860,7.96e-19,42;CL:0002057,7.96e-19,42;CL:0000763,1.47e-17,108;CL:0000049,1.47e-17,108;CL:0000473,1.96e-16,48;CL:0000234,1.96e-16,48;CL:0000738,8.47e-14,136;CL:0002194,4.46e-13,59;CL:0000576,4.46e-13,59;CL:0000040,4.46e-13,59;CL:0000559,4.46e-13,59;CL:0002009,1.21e-12,61;CL:0000839,1.13e-11,66;CL:0002032,1.57e-11,161;CL:0000837,1.57e-11,161;CL:0000557,1.71e-11,67;CL:0000037,5.14e-11,168;CL:0000988,2.07e-10,177 | |||
|ontology_enrichment_development_v019=CL:0002057;5.04e-12;42!CL:0000049;4.74e-07;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!2.95e-13!80;UBERON:0002390!9.87e-13!102;UBERON:0003061!9.87e-13!102;UBERON:0001474!5.90e-12!86;UBERON:0002193!4.77e-11!112;UBERON:0004765!2.13e-09!101;UBERON:0001434!2.13e-09!101;UBERON:0002405!1.41e-08!115 | |ontology_enrichment_uberon=UBERON:0002371!2.95e-13!80;UBERON:0002390!9.87e-13!102;UBERON:0003061!9.87e-13!102;UBERON:0001474!5.90e-12!86;UBERON:0002193!4.77e-11!112;UBERON:0004765!2.13e-09!101;UBERON:0001434!2.13e-09!101;UBERON:0002405!1.41e-08!115 | ||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,4.20e-10,76;UBERON:0001474,2.43e-09,82;UBERON:0004765,1.76e-08,90;UBERON:0002405,3.39e-08,93;UBERON:0002390,9.29e-08,98;UBERON:0003061,9.29e-08,98;UBERON:0001434,1.35e-07,100;UBERON:0002193,5.30e-07,108 | |||
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| ||
|short_description=p16@TRIM39 | |short_description=p16@TRIM39 | ||
}} | }} |
Latest revision as of 16:31, 17 September 2015
Short description: | p16@TRIM39 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_16_at_TRIM39_5end |
Coexpression cluster: | C2_Eosinophils_Neutrophils_CD14_Whole_Basophils_Peripheral_Mast |
Association with transcript: | 118bp_to_ENST00000376659_5end |
EntrezGene: | TRIM39 |
HGNC: | 10065 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
eosinophil | 1.11e-34 | 2 |
granulocyte | 8.81e-34 | 8 |
myeloid leukocyte | 1.37e-26 | 72 |
blood cell | 1.05e-24 | 11 |
neutrophil | 3.68e-23 | 3 |
classical monocyte | 7.96e-19 | 42 |
CD14-positive, CD16-negative classical monocyte | 7.96e-19 | 42 |
myeloid cell | 1.47e-17 | 108 |
common myeloid progenitor | 1.47e-17 | 108 |
defensive cell | 1.96e-16 | 48 |
phagocyte | 1.96e-16 | 48 |
leukocyte | 8.47e-14 | 136 |
monopoietic cell | 4.46e-13 | 59 |
monocyte | 4.46e-13 | 59 |
monoblast | 4.46e-13 | 59 |
promonocyte | 4.46e-13 | 59 |
macrophage dendritic cell progenitor | 1.21e-12 | 61 |
myeloid lineage restricted progenitor cell | 1.13e-11 | 66 |
hematopoietic oligopotent progenitor cell | 1.57e-11 | 161 |
hematopoietic multipotent progenitor cell | 1.57e-11 | 161 |
granulocyte monocyte progenitor cell | 1.71e-11 | 67 |
hematopoietic stem cell | 5.14e-11 | 168 |
hematopoietic cell | 2.07e-10 | 177 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 4.20e-10 | 76 |
bone element | 2.43e-09 | 82 |
skeletal element | 1.76e-08 | 90 |
immune system | 3.39e-08 | 93 |
hematopoietic system | 9.29e-08 | 98 |
blood island | 9.29e-08 | 98 |
skeletal system | 1.35e-07 | 100 |
hemolymphoid system | 5.30e-07 | 108 |