FFCP PHASE1:Hg19::chr17:38487239..38487261,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr17:38487239..38487261,+
|short_description=p12@RARA
|description=CAGE_peak_12_at_RARA_5end
|association_with_transcript=-108bp_to_X06614_5end
|EntrezGene=59...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=5914 | |EntrezGene=5914 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=9864 | |HGNC=9864 | ||
|TSSclassifier=strong | |||
|UniProt=P10276 | |UniProt=P10276 | ||
|association_with_transcript=-108bp_to_X06614_5end | |||
|cluster_id=chr17:38487239..38487261,+ | |||
|coexpression_cluster_id=C2 | |||
|description=CAGE_peak_12_at_RARA_5end | |||
|id=chr17:38487239..38487261,+ | |||
|ontology_enrichment_celltype=CL:0002057!1.48e-22!42;CL:0000860!7.18e-20!45;CL:0000766!3.24e-18!76;CL:0000557!2.93e-16!71;CL:0000839!8.95e-15!70;CL:0002009!1.20e-14!65;CL:0002194!1.16e-13!63;CL:0000576!1.16e-13!63;CL:0000040!1.16e-13!63;CL:0000559!1.16e-13!63;CL:0000763!3.56e-10!112;CL:0000049!3.56e-10!112;CL:0000738!8.59e-10!140;CL:0002031!4.68e-09!124;CL:0002087!2.68e-07!119 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.74e-40;33!CL:0002057;1.74e-40;33!CL:0000473;2.77e-29;39!CL:0000234;2.77e-29;39!CL:0000576;8.82e-24;48!CL:0000766;7.00e-20;69!CL:0000775;3.85e-13;3!CL:0000097;8.63e-13;5!CL:0000763;2.41e-10;100!CL:0000094;2.65e-08;8!CL:0000163;4.18e-07;9!CL:0000738;6.19e-07;136 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,2.09e-42,72;CL:0000860,8.53e-38,42;CL:0002057,8.53e-38,42;CL:0000839,3.83e-34,66;CL:0000557,1.54e-33,67;CL:0000473,2.34e-32,48;CL:0000234,2.34e-32,48;CL:0002194,3.75e-27,59;CL:0000576,3.75e-27,59;CL:0000040,3.75e-27,59;CL:0000559,3.75e-27,59;CL:0002009,4.37e-26,61;CL:0000763,8.41e-26,108;CL:0000049,8.41e-26,108;CL:0000738,6.03e-19,136;CL:0002031,7.28e-16,120;CL:0002032,7.55e-15,161;CL:0000837,7.55e-15,161;CL:0000037,6.37e-14,168;CL:0000775,3.87e-13,3;CL:0000988,7.68e-13,177;CL:0000097,9.35e-13,5;CL:0002028,9.35e-13,5;CL:0002087,2.69e-11,115;CL:0000094,2.56e-08,8;CL:0000163,4.36e-07,9 | |||
|ontology_enrichment_development_v019=CL:0002057;1.10e-27;42!CL:0000049;1.40e-10;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!4.15e-15!80;UBERON:0001474!1.40e-14!86;UBERON:0004765!6.87e-13!101;UBERON:0001434!6.87e-13!101;UBERON:0002390!3.12e-12!102;UBERON:0003061!3.12e-12!102;UBERON:0002193!1.35e-11!112;UBERON:0002405!2.87e-11!115;UBERON:0003081!9.98e-07!216 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,8.28e-29,76;UBERON:0001474,3.16e-26,82;UBERON:0002405,2.80e-24,93;UBERON:0004765,2.56e-23,90;UBERON:0001434,4.80e-22,100;UBERON:0002390,6.97e-21,98;UBERON:0003061,6.97e-21,98;UBERON:0002193,5.71e-20,108;UBERON:0002204,1.31e-12,167;UBERON:0003081,4.57e-10,203;UBERON:0000926,4.18e-08,315;UBERON:0004120,4.18e-08,315;UBERON:0006603,4.18e-08,315 | |||
|phase1_expression=0.363356758541113,0.214100523890983,0.563817616383885,0,0,0,0,0,0,0,0.697801167972428,0,0.263766978228454,0.37129905888014,0.331397375727916,0,0,0,0,0.123121058076788,0,0.313454721478088,0,0,0,0.229240217243854,0.328402357799783,0.236132343941038,0.786728553697808,0,0.154816123316076,0,0,0.739508020333575,0,0,0,0,0.200544447470142,0.217010870715852,0.895661896959697,0.971680998056939,1.03030227053675,2.32637182047304,1.51150377475524,2.66842467306598,2.09186133215116,1.23350366406548,1.23882548358041,2.58923153089935,0.512321413058201,0.47296445977717,3.7922024881028,1.93645405075148,4.06279459783025,3.01187743268168,4.09359225086769,1.57306439111559,4.59125838556354,6.73950956859797,5.11469700639233,1.31940520074686,1.39624560335142,1.27867425159808,0.290209238628584,0,0.622822248995575,1.25624332628372,1.5644487552606,0.434377689410233,0,0.368277635987565,0.632924774881769,0.211255286311942,1.27562579979026,0.628975936525128,0.44931452458598,0.600707571366025,0.64290234678832,0,0.59675003159727,0.91332076882317,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393010762749165,0,0,0,0,0,0.222820913770347,0,0,0.541607727530031,0.128091319725675,0.130059347559878,0,0,0.579606171470105,0.14828656316206,0,1.04535523804977,0,0,0,0,0,0,0,0.301150238155546,0.127986611154418,0,0,0,0.403213486449465,0.534880391567015,0.289648807765598,0,0.670700859703636,0,0.361439152384566,0.50133791063589,0.724232594804119,0,0,0.0945348171640679,0,0,0.130979075497713,0,0,0,0.348259474598534,0.26591592103773,0,0,0,0,0,0,0.56530794192401,0,0.275118041940067,0,0.516833518338658,0,0,0.402829317109147,0,0.732186172644509,0,0,0,0,0.225222960966644,0,0,0.183201743930407,2.63560834872127,0,0,0,0.379891534993739,0,0,0,0,0,0.24666754841716,0.311211035399766,0.134710672069688,0,0.151357427644931,0,0,0,0,0.149448680551801,0,0,0,0,0,0.309977343527296,0,0.247266929278557,0,0,0,0,0,0,0.30648779579902,0.751190294532984,0.113432183160021,0,0.213557388818567,0,0,0.103052529238439,0,0,0,0,0,0,0.646584227275248,0,0,0,0.193260853163297,0,0.286804595389004,0,0,0,0,0,0.36497735907583,0,0,0,0,0,0,0,0.241011029883482,0,0,0,0,0.196221465125346,0,0,0,0,0,0,0,1.18157981336281,0,0,0,0,0,0,0,0,0,0,0,0,0.144366447761074,0,0.190254152234598,0,0.858486162094873,0,0,0,0,0,0,0,0,0,0,1.23267807618516,4.56121854189699,4.17947864909188,6.05963680446624,0,0,1.17217447210047,5.13217338068116,0.205654985406647,0,0.857479297891735,0,0.43596006883328,0,0,0,0,0.26593811658487,0,0,0,0.266422179016099,0,1.08524321078289,0,0,0,0,0,0,0,0,0,0,0.239624855491583,0,0,0.144781306667579,0.205476322550383,0.179060963239896,0,0.591092280605782,0,0.256686072559497,0.254094624222463,0,0,0,0,17.2271615507852,8.97484377612075,23.207268752418,0,0,0.271265023699736,0.207970861530807,0.178428988797162,0.157702415033935,0,0.300946099727719,0,3.10419213877515,0,0.184369168541703,0.173767228936166,0.391602314925481,0.686286847621712,0,0.215714200818617,0.106727557803444,0.606255142892519,0,0.30239029332968,0.496215615637554,0,0,0,1.53512174720011,0.160853921143607,0,0,0.355123450626254,0.164254312027618,0.519254429183621,0,0.483437798366489,0,0.276242966807689,0,0,0.131124414959424,0,0.0770153371044148,0,0,0.105551628892876,0,0,0,0,0,0,0,0,0,0,0,0,0,0.325378394664303,0.721287081534056,0,0.165018999841176,0.574265537996172,0.650060246036521,0,0.48335359146061,0,0,0,0.107420244868274,0,0,0.267096106940212,0.165284915360978,0.192190067365106,0,0.2023155617111,0.464845549297286,0,0,0,0,0,0.55597265731176,0,0,0,0.190630193923825,0,0,0.318203247925937,0,0,0,0,0,0,0,0,0,0,0,0.141405431953713,0,0,0,0,0,0,0,0.30982349809975,0.281695602532241,0,0,0,0,1.05553817648832,0,0,0.349934720244983,0.0962221127255121,0,0,0.470719003883896,0.43050537267123,0,0,0.229723400206959,0.507447609232169,0,0,0,0,0,0.540031437238115,0,0,0,0,0,0,0.0711418433484141,0,0,0.191505370132367,0,0,0,0,0,0,0,0,0.403599414382095,0,0.343505344755765,0,0,0,0.19538809540204,0,0,0.270455678475983,0,0,0.18714054040822,0.879049075631364,0,0,0,0,0.593929361665277,0,0,0,0.222617410045812,0.16480387422676,0.211125408127993,0.19924798825107,0.828851746593443,0,0,0.123084805461069,0,0.0898683511473268,0,0,0.295930216910801,0,0,0,0.0927680981618513,0,0,0,0.724999575434793,0,0,0,0,0,0,0,0,0,0.110579259931225,0,0,0,0,1.00035336054936,0.113942055847001,0,0.0897576444097721,0,0,0.549585560411174,0,0,0.156980256395025,0,0,0,0,0,0,0.210998064528027,0,0,0,0,0.707660516026713,1.22206028986725,0,0.123563938946503,0,0,0,0,0,0,0,0,0,0,0.126373159256976,2.25485129121739,0,0,0,0.313932918407225,0,0,0,0,0.0979923974143777,0,2.27144668714639,0,0,0,0,0.484945082442097,0.176512253383001,0.225980740780532,0,0,0,0.195551382734803,0.0801588202515337,1.49417096317547,0,0,0,0,0.14405479798815,0,0,0,0,0,0.288950589901519,0,0,0,0.859530882839914,0.525774708558629,0.837847203816763,0.229160424011684,0,0,0,0.669514372325618,0.134366944973453,0,0,0,0.0824158583811665,0.0674035438541849,0.295282444544246,0,0,0,0.160753148465019,0,0,0.449947783103001,0.77380195455795,0,0,0.0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| ||
|short_description=p12@RARA | |||
}} | }} |
Latest revision as of 01:09, 20 September 2015
Short description: | p12@RARA |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_12_at_RARA_5end |
Coexpression cluster: | C2_Eosinophils_Neutrophils_CD14_Whole_Basophils_Peripheral_Mast |
Association with transcript: | -108bp_to_X06614_5end |
EntrezGene: | RARA |
HGNC: | 9864 |
UniProt: | P10276 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 2.09e-42 | 72 |
classical monocyte | 8.53e-38 | 42 |
CD14-positive, CD16-negative classical monocyte | 8.53e-38 | 42 |
myeloid lineage restricted progenitor cell | 3.83e-34 | 66 |
granulocyte monocyte progenitor cell | 1.54e-33 | 67 |
defensive cell | 2.34e-32 | 48 |
phagocyte | 2.34e-32 | 48 |
monopoietic cell | 3.75e-27 | 59 |
monocyte | 3.75e-27 | 59 |
monoblast | 3.75e-27 | 59 |
promonocyte | 3.75e-27 | 59 |
macrophage dendritic cell progenitor | 4.37e-26 | 61 |
myeloid cell | 8.41e-26 | 108 |
common myeloid progenitor | 8.41e-26 | 108 |
leukocyte | 6.03e-19 | 136 |
hematopoietic lineage restricted progenitor cell | 7.28e-16 | 120 |
hematopoietic oligopotent progenitor cell | 7.55e-15 | 161 |
hematopoietic multipotent progenitor cell | 7.55e-15 | 161 |
hematopoietic stem cell | 6.37e-14 | 168 |
neutrophil | 3.87e-13 | 3 |
hematopoietic cell | 7.68e-13 | 177 |
mast cell | 9.35e-13 | 5 |
basophil mast progenitor cell | 9.35e-13 | 5 |
nongranular leukocyte | 2.69e-11 | 115 |
granulocyte | 2.56e-08 | 8 |
endocrine cell | 4.36e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 8.28e-29 | 76 |
bone element | 3.16e-26 | 82 |
immune system | 2.80e-24 | 93 |
skeletal element | 2.56e-23 | 90 |
skeletal system | 4.80e-22 | 100 |
hematopoietic system | 6.97e-21 | 98 |
blood island | 6.97e-21 | 98 |
hemolymphoid system | 5.71e-20 | 108 |
musculoskeletal system | 1.31e-12 | 167 |
lateral plate mesoderm | 4.57e-10 | 203 |
mesoderm | 4.18e-08 | 315 |
mesoderm-derived structure | 4.18e-08 | 315 |
presumptive mesoderm | 4.18e-08 | 315 |