FFCP PHASE1:Hg19::chr19:3136918..3136931,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr19:3136918..3136931,-
|short_description=p@chr19:3136918..3136931,-
|description=CAGE_peak_at_chr19:3136918..3136931,-
|association_with_transcript=NA
|Entr...") |
No edit summary |
||
(10 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr19:3136918..3136931,- | |||
|coexpression_cluster_id=C1451 | |||
|description=CAGE_peak_at_chr19:3136918..3136931,- | |||
|id=chr19:3136918..3136931,- | |||
|ontology_enrichment_celltype=CL:0002076!3.69e-14!43;CL:0002368!3.82e-12!13;CL:0002159!1.02e-10!13;CL:0000223!1.07e-08!59;CL:0002202!1.05e-07!9;CL:0002632!1.05e-07!9;CL:0000738!4.51e-07!140 | |||
|ontology_enrichment_celltype_v019=CL:0002076;2.32e-16;42!CL:0002159;3.16e-16;14!CL:0002368;4.07e-15;13!CL:0002251;6.81e-11;20!CL:0000244;3.25e-09;4!CL:0000731;3.25e-09;4!CL:0000240;1.63e-08;6!CL:0000311;1.63e-08;6!CL:0000079;1.63e-08;6!CL:0000237;1.63e-08;6!CL:0002202;3.85e-08;9!CL:0002632;3.85e-08;9!CL:0000362;4.08e-08;9!CL:0000349;5.70e-08;19!CL:0002328;2.68e-07;3!CL:0002621;3.60e-07;3!CL:0000307;4.45e-07;3!CL:0000312;4.61e-07;5!CL:0002166;4.63e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002076,3.75e-21,42;CL:0000066,2.15e-16,253;CL:0002159,3.32e-16,14;CL:0002368,4.20e-15,13;CL:0000223,1.10e-14,58;CL:0002251,8.34e-11,20;CL:0000244,3.26e-09,4;CL:0000731,3.26e-09,4;CL:0000240,1.69e-08,6;CL:0000311,1.69e-08,6;CL:0000079,1.69e-08,6;CL:0000237,1.69e-08,6;CL:0000036,1.69e-08,6;CL:0000357,1.69e-08,6;CL:0000114,1.69e-08,6;CL:0002202,3.86e-08,9;CL:0002632,3.86e-08,9;CL:0000362,4.16e-08,9;CL:0000076,4.99e-08,63;CL:0000349,5.83e-08,19;CL:0002328,2.66e-07,3;CL:0002077,2.71e-07,34;CL:0002621,3.68e-07,3;CL:0000068,4.50e-07,3;CL:0000069,4.50e-07,3;CL:0000307,4.50e-07,3;CL:0000377,4.50e-07,3;CL:0000312,4.65e-07,5;CL:0002166,4.77e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000357;1.63e-08;6!CL:0000114;1.63e-08;6!CL:0000223;3.94e-08;58!CL:0000377;4.45e-07;3 | |||
|ontology_enrichment_disease=DOID:1749!3.04e-10!14 | |||
|ontology_enrichment_disease_v019=DOID:1749;7.11e-17;14 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,7.70e-17,14 | |||
|ontology_enrichment_uberon=UBERON:0001004!2.14e-10!72;UBERON:0005631!2.57e-09!14;UBERON:0000158!2.57e-09!14;UBERON:0000166!1.86e-07!21;UBERON:0004119!3.88e-07!169;UBERON:0000925!3.88e-07!169;UBERON:0006595!3.88e-07!169;UBERON:0000161!5.01e-07!35;UBERON:0000365!5.63e-07!5;UBERON:0007196!7.84e-07!14;UBERON:0001558!7.84e-07!14;UBERON:0000065!8.11e-07!53 | |||
|ontology_enrichment_uberon_v019=UBERON:0000365;1.17e-10;5!UBERON:0000486;3.61e-10;12!UBERON:0000344;2.26e-09;20!UBERON:0005910;8.79e-09;6!UBERON:0003729;2.38e-08;13!UBERON:0005631;2.69e-08;10!UBERON:0000158;2.69e-08;10!UBERON:0000161;5.14e-08;19!UBERON:0000166;5.14e-08;19!UBERON:0003343;1.22e-07;4!UBERON:0004785;1.22e-07;4!UBERON:0000974;1.35e-07;6!UBERON:0007196;1.53e-07;15!UBERON:0001558;1.53e-07;15!UBERON:0004815;2.68e-07;3!UBERON:0002031;2.68e-07;3!UBERON:0001949;3.60e-07;3!UBERON:0000165;4.68e-07;28!UBERON:0003126;5.21e-07;7!UBERON:0001005;5.21e-07;7!UBERON:0000305;7.94e-07;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001004,3.35e-14,74;UBERON:0004119,1.22e-13,160;UBERON:0000925,1.22e-13,160;UBERON:0006595,1.22e-13,160;UBERON:0005631,1.35e-11,14;UBERON:0000158,1.35e-11,14;UBERON:0000365,1.10e-10,5;UBERON:0000974,1.23e-10,10;UBERON:0000161,1.47e-09,36;UBERON:0000065,1.87e-09,54;UBERON:0003102,2.08e-09,99;UBERON:0000344,2.57e-09,20;UBERON:0000153,5.38e-09,62;UBERON:0007811,5.38e-09,62;UBERON:0005910,8.39e-09,6;UBERON:0003729,2.84e-08,13;UBERON:0000166,4.29e-08,22;UBERON:0007196,1.37e-07,15;UBERON:0001558,1.37e-07,15;UBERON:0003343,1.56e-07,4;UBERON:0004785,1.56e-07,4;UBERON:0004815,2.66e-07,3;UBERON:0002031,2.66e-07,3;UBERON:0001949,3.68e-07,3;UBERON:0006562,4.05e-07,11;UBERON:0004923,4.15e-07,66;UBERON:0003126,4.46e-07,7;UBERON:0001005,4.46e-07,7;UBERON:0001007,4.54e-07,145;UBERON:0001555,4.54e-07,145;UBERON:0007026,4.54e-07,145;UBERON:0000305,7.22e-07,7 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,1.39560233594486,7.64544802455603,12.1332809985089,0,0,0,0,0,0,0,0,0,0,0,0,0.687720651731561,0.903106483949403,0.393553906568396,0.786728553697808,0,0.309632246632152,14.7107395916628,12.3494426699083,17.7481924880058,0,0,0,0,0.401088894940283,0.217010870715852,0,0,0,0.145398238779565,0,0.485168122375632,0,0.822335776043652,0.309706370895104,1.7261543539329,0,0.709446689665756,0,0,0,0.188242339542605,0.272906150057846,0.449446968890169,0,0.641858054152187,0,0,0.199463657621632,0,0,0,0,0.251248665256743,0.521482918420201,0.434377689410233,1.21079900526674,0,0.316462387440884,0,0,0,0.112328631146495,0.150176892841506,0.16072558669708,0.285012743741249,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32171328579026,0,0,0,0,0.411202997999018,0,0,0,0,1.55974639639243,3.24066498222321,2.21533894583621,1.62482318259009,0.896639238079726,1.30059347559878,0.164437904603676,0,0.289803085735052,0,0,0,0.453237370790265,1.53288197440768,0.34362744548263,0.253019692019503,0,0,0,0.150575119077773,0,0,0,0,0,0.267440195783507,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,11.6574492253614,5.19098219898201,0,0,0.26591592103773,0.953962497221368,0,0.74291500265913,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31780417436063,3.87780264148325,9.59406914713576,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,13.1417380151042,14.7282905119051,10.6117700293931,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.20731549707325,0,0,26.0108176418443,24.7283857166763,13.5714112755702,3.42577247086559,0,0,0,0,0,0,0,0,0,0,0,0,0,6.56136837907439,18.1420698454768,11.6255579738757,7.7915914751478,5.23141089325132,3.83382679165211,0,0,0.207328115540772,0.720599767084807,0.50496973370552,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.431255149719035,0.128343036279748,0,0,0,0,0,0,0,1.65766205374414,0,0,0,0,0,0,0,0,0,1.03473071292505,0,0,0,0,0,0.206768026122887,0.215714200818617,0.320182673410333,3.03127571446259,16.6435439510497,3.93107381328584,0,0,0,0,0,0,0,0,0,0,0,0,0,13.8349464509267,19.1528456986664,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.831076008928724,0,0,0,0,0,0,0.206082023295445,0,0,13.208107373912,18.2016868890226,0,0,0,0,0,0,0,0,0,14.0492178056831,15.5673954565736,26.1606060613897,18.1072427731434,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0,0,0,0,0,10.1033218361788,7.37332503089366,18.5114674264248,0.188287601553558,18.9422363975341,23.5860065934676,15.5200553737836,7.12142540641574,0,0,0,0,0,0,0,0,0,0,3.67560323971548,0,0.432807638929335,0.284567373393656,0.797131363644112,0.399158742865633,0.191505370132367,0.635020748171649,0,0.280797178113459,0.228234679033192,0,0,0,0.321176150207399,0,0,0,0,0,0,0,0.835218521685727,0,0,0,0,0,0,0,3.34330152832435,0,4.7748896947538,2.67268212749375,6.75753544618311,0,0,0,0,0,1.59398390600856,0,0,0,0.246169610922139,0,4.13394415277704,0,0,2.66337195219721,0,0,0,0,0,0,0,0.724999575434793,1.82069517256799,0.254253650292766,0,0,0,0,0,0,0,0,0,0,0,6.97118721393016,1.46205491157214,0,0,0.0897576444097721,0,2.55200927785536,0.183195186803725,1.06606955203727,9.19739683761629,0.31396051279005,0,0,0,0,0,0.158936578980379,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.69595085437015,0,0.394584402849391,0,0,0.063186579628488,0.150323419414493,0,0,0,0.313932918407225,0,0,0,0.173559738335131,4.40965788364699,4.78825636192214,0.17472666824203,0,0,0,0,6.4982641047241,0,1.58186518546373,0,0,0,0.195551382734803,1.76349404553374,0,0,0,0,0,0,0.248505071130865,6.36373893465348,0,0,0,0,0,0,0,0,1.05154941711726,0,0,0,0.399358000997982,0,0,0.0671834724867263,0,0,0,0,0,0,0,0,0,0,0,0,13.2734596015385,58.8089485464042,0.0607495566580247,4.02521625119119,0,0,0,0,11.7068270364862,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.40963004463334,0.320362237703084,0.157204305099666,0,0,0,0,1.27668251554036,0,0,0,0,3.92635240625586,0,0,0,0,0.221858103073705,0,0,2.12466693535581,0,0,0,0,2.3187364577732,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,1.16916185303633,0.265729680626726,0.163565394255844,0,0,6.55067582411744,0.39997479170986,0,0,0,0,8.95228849404445,4.97661808026378,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205116364240755,0,0,0,0,3.04257927353179,4.01097059382317,8.07085833495388,1.38630799380406,0,0,0,0,0,0,0,0.163771917510097,2.36569737947272,0,0,0,0,0,0,3.96968942711435,0,1.14986184875636,0,0,0,0.227662191351298,0.177404740325278,0,0,0.0679697329768317,0.0657727735628491,0,0,3.84616154967519,0,0,0,0,0,0,0,0,0,0,1.45051314914126,0.17071847709395,2.76503864725637,0,0,0,0.846774100381858,0,0,0,0,0,0,0,0,0,1.94284397223656,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193373663920732,0,8.92769693028288,55.7573897310793,0,0,0.917458566809082,0,0,0,0,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,4.05144565611864,0,4.71499041802845,10.6147761445917,0,0,0,5.00748520163011,0.684466602170562,4.64729165800654,8.24805362015778,1.99596213927608,3.90735689332678,0,0,0,0,0.244482888365733,0.813792356631477,0,1.00636896795513,0.320568492303233 | |phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,1.39560233594486,7.64544802455603,12.1332809985089,0,0,0,0,0,0,0,0,0,0,0,0,0.687720651731561,0.903106483949403,0.393553906568396,0.786728553697808,0,0.309632246632152,14.7107395916628,12.3494426699083,17.7481924880058,0,0,0,0,0.401088894940283,0.217010870715852,0,0,0,0.145398238779565,0,0.485168122375632,0,0.822335776043652,0.309706370895104,1.7261543539329,0,0.709446689665756,0,0,0,0.188242339542605,0.272906150057846,0.449446968890169,0,0.641858054152187,0,0,0.199463657621632,0,0,0,0,0.251248665256743,0.521482918420201,0.434377689410233,1.21079900526674,0,0.316462387440884,0,0,0,0.112328631146495,0.150176892841506,0.16072558669708,0.285012743741249,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32171328579026,0,0,0,0,0.411202997999018,0,0,0,0,1.55974639639243,3.24066498222321,2.21533894583621,1.62482318259009,0.896639238079726,1.30059347559878,0.164437904603676,0,0.289803085735052,0,0,0,0.453237370790265,1.53288197440768,0.34362744548263,0.253019692019503,0,0,0,0.150575119077773,0,0,0,0,0,0.267440195783507,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,11.6574492253614,5.19098219898201,0,0,0.26591592103773,0.953962497221368,0,0.74291500265913,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31780417436063,3.87780264148325,9.59406914713576,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,13.1417380151042,14.7282905119051,10.6117700293931,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.20731549707325,0,0,26.0108176418443,24.7283857166763,13.5714112755702,3.42577247086559,0,0,0,0,0,0,0,0,0,0,0,0,0,6.56136837907439,18.1420698454768,11.6255579738757,7.7915914751478,5.23141089325132,3.83382679165211,0,0,0.207328115540772,0.720599767084807,0.50496973370552,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.431255149719035,0.128343036279748,0,0,0,0,0,0,0,1.65766205374414,0,0,0,0,0,0,0,0,0,1.03473071292505,0,0,0,0,0,0.206768026122887,0.215714200818617,0.320182673410333,3.03127571446259,16.6435439510497,3.93107381328584,0,0,0,0,0,0,0,0,0,0,0,0,0,13.8349464509267,19.1528456986664,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.831076008928724,0,0,0,0,0,0,0.206082023295445,0,0,13.208107373912,18.2016868890226,0,0,0,0,0,0,0,0,0,14.0492178056831,15.5673954565736,26.1606060613897,18.1072427731434,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0,0,0,0,0,10.1033218361788,7.37332503089366,18.5114674264248,0.188287601553558,18.9422363975341,23.5860065934676,15.5200553737836,7.12142540641574,0,0,0,0,0,0,0,0,0,0,3.67560323971548,0,0.432807638929335,0.284567373393656,0.797131363644112,0.399158742865633,0.191505370132367,0.635020748171649,0,0.280797178113459,0.228234679033192,0,0,0,0.321176150207399,0,0,0,0,0,0,0,0.835218521685727,0,0,0,0,0,0,0,3.34330152832435,0,4.7748896947538,2.67268212749375,6.75753544618311,0,0,0,0,0,1.59398390600856,0,0,0,0.246169610922139,0,4.13394415277704,0,0,2.66337195219721,0,0,0,0,0,0,0,0.724999575434793,1.82069517256799,0.254253650292766,0,0,0,0,0,0,0,0,0,0,0,6.97118721393016,1.46205491157214,0,0,0.0897576444097721,0,2.55200927785536,0.183195186803725,1.06606955203727,9.19739683761629,0.31396051279005,0,0,0,0,0,0.158936578980379,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.69595085437015,0,0.394584402849391,0,0,0.063186579628488,0.150323419414493,0,0,0,0.313932918407225,0,0,0,0.173559738335131,4.40965788364699,4.78825636192214,0.17472666824203,0,0,0,0,6.4982641047241,0,1.58186518546373,0,0,0,0.195551382734803,1.76349404553374,0,0,0,0,0,0,0.248505071130865,6.36373893465348,0,0,0,0,0,0,0,0,1.05154941711726,0,0,0,0.399358000997982,0,0,0.0671834724867263,0,0,0,0,0,0,0,0,0,0,0,0,13.2734596015385,58.8089485464042,0.0607495566580247,4.02521625119119,0,0,0,0,11.7068270364862,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.40963004463334,0.320362237703084,0.157204305099666,0,0,0,0,1.27668251554036,0,0,0,0,3.92635240625586,0,0,0,0,0.221858103073705,0,0,2.12466693535581,0,0,0,0,2.3187364577732,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,1.16916185303633,0.265729680626726,0.163565394255844,0,0,6.55067582411744,0.39997479170986,0,0,0,0,8.95228849404445,4.97661808026378,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205116364240755,0,0,0,0,3.04257927353179,4.01097059382317,8.07085833495388,1.38630799380406,0,0,0,0,0,0,0,0.163771917510097,2.36569737947272,0,0,0,0,0,0,3.96968942711435,0,1.14986184875636,0,0,0,0.227662191351298,0.177404740325278,0,0,0.0679697329768317,0.0657727735628491,0,0,3.84616154967519,0,0,0,0,0,0,0,0,0,0,1.45051314914126,0.17071847709395,2.76503864725637,0,0,0,0.846774100381858,0,0,0,0,0,0,0,0,0,1.94284397223656,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193373663920732,0,8.92769693028288,55.7573897310793,0,0,0.917458566809082,0,0,0,0,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,4.05144565611864,0,4.71499041802845,10.6147761445917,0,0,0,5.00748520163011,0.684466602170562,4.64729165800654,8.24805362015778,1.99596213927608,3.90735689332678,0,0,0,0,0.244482888365733,0.813792356631477,0,1.00636896795513,0.320568492303233 | ||
|short_description=p@chr19:3136918..3136931,- | |||
}} | }} |
Latest revision as of 06:10, 26 July 2015
Short description: | p@chr19:3136918..3136931, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr19:3136918..3136931, - |
Coexpression cluster: | C1451_immature_Sebocyte_squamous_Keratinocyte_Corneal_Small_Urothelial |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
respiratory system | 3.35e-14 | 74 |
endoderm-derived structure | 1.22e-13 | 160 |
endoderm | 1.22e-13 | 160 |
presumptive endoderm | 1.22e-13 | 160 |
extraembryonic membrane | 1.35e-11 | 14 |
membranous layer | 1.35e-11 | 14 |
urothelium | 1.10e-10 | 5 |
neck | 1.23e-10 | 10 |
orifice | 1.47e-09 | 36 |
respiratory tract | 1.87e-09 | 54 |
surface structure | 2.08e-09 | 99 |
mucosa | 2.57e-09 | 20 |
anterior region of body | 5.38e-09 | 62 |
craniocervical region | 5.38e-09 | 62 |
transitional epithelium | 8.39e-09 | 6 |
mouth mucosa | 2.84e-08 | 13 |
oral opening | 4.29e-08 | 22 |
tracheobronchial tree | 1.37e-07 | 15 |
lower respiratory tract | 1.37e-07 | 15 |
mucosa of oral region | 1.56e-07 | 4 |
respiratory system mucosa | 1.56e-07 | 4 |
lower respiratory tract epithelium | 2.66e-07 | 3 |
epithelium of bronchus | 2.66e-07 | 3 |
gingival epithelium | 3.68e-07 | 3 |
pharynx | 4.05e-07 | 11 |
organ component layer | 4.15e-07 | 66 |
trachea | 4.46e-07 | 7 |
respiratory airway | 4.46e-07 | 7 |
digestive system | 4.54e-07 | 145 |
digestive tract | 4.54e-07 | 145 |
primitive gut | 4.54e-07 | 145 |
amnion | 7.22e-07 | 7 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 7.70e-17 | 14 |