FF:11886-125D5: Difference between revisions

Latest revision as of 18:26, 4 June 2020

Name:	CD14+ monocytes - treated with Salmonella, donor3
Species:	Human (Homo sapiens)
Library ID:	CNhs13493
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	NA
dev stage	NA
sex	female
age	21
cell type	monocyte
cell line	NA
company	NA
collaboration	Christine Wells (University of Queensland)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	D5-7
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005948

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs13493		CAGE		DRX008155		DRR009027

Accession ID Hg19

Library id		BAM		CTSS
CNhs13493		DRZ000452		DRZ001837

Accession ID Hg38

Library id		BAM		CTSS
CNhs13493		DRZ011802		DRZ013187

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0.82
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.08
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0.729
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.525
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0.21
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0.675
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.21
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0.729
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0.458
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0.614
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.406
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.491
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.126
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.859
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0.21
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0.417
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.372
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0.351
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.241
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0.614
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.857
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0.351
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.753
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.642
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.476
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0.952
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.675
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0.21
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.484
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0.614
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0.959
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.351
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.767
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.963
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0.21
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.579
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.0878
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0.21
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.543
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0.105
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.307
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0.458
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0.675
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0.351
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0.21
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0.21
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0.21
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0.21
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13493

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	8.44604e-7
MA0003.1	MA0003.1	0.611
MA0004.1	MA0004.1	0.486
MA0006.1	MA0006.1	0.992
MA0007.1	MA0007.1	0.955
MA0009.1	MA0009.1	0.381
MA0014.1	MA0014.1	0.956
MA0017.1	MA0017.1	0.131
MA0018.2	MA0018.2	0.105
MA0019.1	MA0019.1	0.478
MA0024.1	MA0024.1	0.00289
MA0025.1	MA0025.1	0.00234
MA0027.1	MA0027.1	0.997
MA0028.1	MA0028.1	0.116
MA0029.1	MA0029.1	0.172
MA0030.1	MA0030.1	0.138
MA0031.1	MA0031.1	0.249
MA0035.2	MA0035.2	0.322
MA0038.1	MA0038.1	0.405
MA0039.2	MA0039.2	0.606
MA0040.1	MA0040.1	0.799
MA0041.1	MA0041.1	0.563
MA0042.1	MA0042.1	0.932
MA0043.1	MA0043.1	2.48974e-8
MA0046.1	MA0046.1	0.00919
MA0047.2	MA0047.2	0.228
MA0048.1	MA0048.1	0.541
MA0050.1	MA0050.1	4.35008e-14
MA0051.1	MA0051.1	6.47947e-9
MA0052.1	MA0052.1	0.137
MA0055.1	MA0055.1	0.417
MA0057.1	MA0057.1	0.465
MA0058.1	MA0058.1	0.292
MA0059.1	MA0059.1	0.242
MA0060.1	MA0060.1	4.45138e-9
MA0061.1	MA0061.1	1.14583e-17
MA0062.2	MA0062.2	0.815
MA0065.2	MA0065.2	0.0295
MA0066.1	MA0066.1	0.049
MA0067.1	MA0067.1	4.3662e-5
MA0068.1	MA0068.1	0.437
MA0069.1	MA0069.1	0.993
MA0070.1	MA0070.1	0.0338
MA0071.1	MA0071.1	0.459
MA0072.1	MA0072.1	0.814
MA0073.1	MA0073.1	0.459
MA0074.1	MA0074.1	0.0964
MA0076.1	MA0076.1	0.12
MA0077.1	MA0077.1	0.304
MA0078.1	MA0078.1	0.594
MA0079.2	MA0079.2	0.197
MA0080.2	MA0080.2	1.12268e-11
MA0081.1	MA0081.1	6.45881e-4
MA0083.1	MA0083.1	0.427
MA0084.1	MA0084.1	0.669
MA0087.1	MA0087.1	0.925
MA0088.1	MA0088.1	0.557
MA0090.1	MA0090.1	0.344
MA0091.1	MA0091.1	0.744
MA0092.1	MA0092.1	0.378
MA0093.1	MA0093.1	0.509
MA0099.2	MA0099.2	2.69495e-43
MA0100.1	MA0100.1	0.607
MA0101.1	MA0101.1	1.36366e-21
MA0102.2	MA0102.2	1.13909e-9
MA0103.1	MA0103.1	0.0955
MA0104.2	MA0104.2	0.51
MA0105.1	MA0105.1	6.33891e-21
MA0106.1	MA0106.1	0.735
MA0107.1	MA0107.1	2.4707e-28
MA0108.2	MA0108.2	0.816
MA0111.1	MA0111.1	0.454
MA0112.2	MA0112.2	5.71614e-4
MA0113.1	MA0113.1	0.988
MA0114.1	MA0114.1	0.157
MA0115.1	MA0115.1	0.783
MA0116.1	MA0116.1	2.49064e-4
MA0117.1	MA0117.1	0.0813
MA0119.1	MA0119.1	0.155
MA0122.1	MA0122.1	0.675
MA0124.1	MA0124.1	0.537
MA0125.1	MA0125.1	0.2
MA0131.1	MA0131.1	0.366
MA0135.1	MA0135.1	0.535
MA0136.1	MA0136.1	3.3778e-12
MA0137.2	MA0137.2	0.0317
MA0138.2	MA0138.2	0.458
MA0139.1	MA0139.1	0.859
MA0140.1	MA0140.1	0.384
MA0141.1	MA0141.1	0.139
MA0142.1	MA0142.1	0.624
MA0143.1	MA0143.1	0.908
MA0144.1	MA0144.1	0.0279
MA0145.1	MA0145.1	0.514
MA0146.1	MA0146.1	0.382
MA0147.1	MA0147.1	0.569
MA0148.1	MA0148.1	0.521
MA0149.1	MA0149.1	0.22
MA0150.1	MA0150.1	2.39499e-20
MA0152.1	MA0152.1	0.959
MA0153.1	MA0153.1	9.62537e-4
MA0154.1	MA0154.1	1.83485e-4
MA0155.1	MA0155.1	0.834
MA0156.1	MA0156.1	9.96651e-8
MA0157.1	MA0157.1	0.915
MA0159.1	MA0159.1	0.019
MA0160.1	MA0160.1	0.0676
MA0162.1	MA0162.1	0.934
MA0163.1	MA0163.1	3.74687e-8
MA0164.1	MA0164.1	0.54
MA0258.1	MA0258.1	0.0199
MA0259.1	MA0259.1	0.544

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13493

Novel motif	Logo	P-value
1	1	0.114
10	10	0.0259
100	100	0.966
101	101	0.88
102	102	0.986
103	103	0.271
104	104	0.54
105	105	0.16
106	106	2.20885e-4
107	107	0.157
108	108	0.81
109	109	0.305
11	11	0.155
110	110	0.182
111	111	0.0757
112	112	0.447
113	113	0.379
114	114	0.0235
115	115	0.146
116	116	0.866
117	117	0.0907
118	118	0.205
119	119	0.117
12	12	0.264
120	120	0.837
121	121	0.751
122	122	0.671
123	123	0.365
124	124	0.874
125	125	0.148
126	126	0.233
127	127	0.484
128	128	0.033
129	129	0.383
13	13	0.0846
130	130	0.295
131	131	0.717
132	132	0.126
133	133	0.993
134	134	0.431
135	135	0.79
136	136	0.936
137	137	0.0405
138	138	0.407
139	139	0.0824
14	14	0.535
140	140	0.481
141	141	0.267
142	142	0.244
143	143	0.0276
144	144	0.427
145	145	0.351
146	146	0.77
147	147	0.849
148	148	0.00876
149	149	0.973
15	15	0.149
150	150	0.269
151	151	0.513
152	152	0.334
153	153	0.67
154	154	0.769
155	155	0.873
156	156	0.724
157	157	0.416
158	158	0.0385
159	159	0.273
16	16	0.339
160	160	0.434
161	161	0.347
162	162	0.23
163	163	0.12
164	164	0.125
165	165	0.228
166	166	0.992
167	167	0.294
168	168	0.105
169	169	0.0155
17	17	0.183
18	18	0.0944
19	19	0.522
2	2	0.564
20	20	0.169
21	21	0.68
22	22	0.296
23	23	0.0288
24	24	0.404
25	25	0.535
26	26	0.0529
27	27	0.561
28	28	0.324
29	29	0.307
3	3	0.117
30	30	0.393
31	31	0.756
32	32	0.483
33	33	0.193
34	34	0.67
35	35	0.104
36	36	0.0699
37	37	0.0712
38	38	0.37
39	39	0.777
4	4	0.975
40	40	0.226
41	41	0.0198
42	42	0.315
43	43	0.0218
44	44	0.614
45	45	0.679
46	46	0.199
47	47	0.57
48	48	0.489
49	49	0.123
5	5	0.317
50	50	0.992
51	51	0.572
52	52	0.29
53	53	0.526
54	54	0.469
55	55	0.716
56	56	0.708
57	57	0.806
58	58	0.18
59	59	0.171
6	6	0.764
60	60	0.0307
61	61	0.697
62	62	0.088
63	63	0.489
64	64	0.561
65	65	0.201
66	66	0.334
67	67	0.41
68	68	0.592
69	69	0.224
7	7	0.239
70	70	0.048
71	71	0.031
72	72	0.272
73	73	0.223
74	74	0.0689
75	75	0.166
76	76	0.173
77	77	0.427
78	78	0.116
79	79	0.961
8	8	0.375
80	80	0.189
81	81	0.357
82	82	0.232
83	83	0.0426
84	84	0.0416
85	85	0.0208
86	86	0.0578
87	87	0.542
88	88	0.762
89	89	0.218
9	9	0.311
90	90	0.0852
91	91	0.352
92	92	0.247
93	93	0.496
94	94	0.0972
95	95	0.61
96	96	0.353
97	97	0.535
98	98	0.141
99	99	0.116

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs13493

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0011109 human CD14-positive monocytes - treated with Salmonella sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0000219 (motile cell)
0000325 (stuff accumulating cell)
0000473 (defensive cell)
0000234 (phagocyte)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0000255 (eukaryotic cell)
0000576 (monocyte)
0000860 (classical monocyte)
0002057 (CD14-positive, CD16-negative classical monocyte)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000625 (experimental infection sample)
0000350 (experimentally modified sample)
0000633 (Salmonella treatment sample)
0011109 (human CD14-positive monocytes - treated with Salmonella sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)
CL:0002057 (CD14-positive, CD16-negative classical monocyte)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0002371,UBERON:0001474,UBERON:0002384,UBERON:0000926,UBERON:0000479,UBERON:0000062,UBERON:0004765,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0002050,UBERON:0005423,UBERON:0000467,UBERON:0001062,UBERON:0005291,UBERON:0006598,UBERON:0002532,UBERON:0002204,UBERON:0001434,UBERON:0002390,UBERON:0002193,UBERON:0002405,UBERON:0003081,UBERON:0006603,UBERON:0003061
+|DRA_sample_Accession=CAGE@SAMD00005948
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000723,CL:0000048,CL:0000988,CL:0000839,CL:0000548,CL:0002194,CL:0000034,CL:0002032,CL:0000763,CL:0000012,CL:0002320,CL:0000063,CL:0002371,CL:0000766,CL:0000219,CL:0000004,CL:0000134,CL:0000738,CL:0002087,CL:0000255,CL:0002031,CL:0000576,CL:0000037,CL:0000860,CL:0000566,CL:0000049,CL:0000557,CL:0000837,CL:0002057,CL:0002009,CL:0000040,CL:0000559
+|accession_numbers=CAGE;DRX008155;DRR009027;DRZ000452;DRZ001837;DRZ011802;DRZ013187
+|ancestors_in_anatomy_facet=
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000325,CL:0000473,CL:0000234,CL:0000738,CL:0002087,CL:0000255,CL:0000576,CL:0000860,CL:0002057
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000625,FF:0000350,FF:0000633,FF:0011109
 |comment=
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr2:68592406..68592424,+!p1@PLEK!3.66!4608.88!PLEK;;chr11:47400078..47400106,-!p1@SPI1!2.98!959.15!SPI1;;chr7:115670804..115670825,-!p1@TFEC!2.85!701.30!TFEC;;chr16:85932760..85932775,+!p1@IRF8!2.45!278.40!IRF8;;chr14:35872453..35872485,-!p2@NFKBIA!2.37!548.71!NFKBIA;;chr11:47400062..47400077,-!p2@SPI1!2.37!232.94!SPI1;;chr10:104155659..104155676,+!p4@NFKB2!2.27!229.20!NFKB2;;chr2:192015701..192015743,-!p1@STAT4!2.22!221.10!STAT4;;chr11:47399947..47399961,-!p3@SPI1!2.20!156.33!SPI1;;chr14:35873947..35873965,-!p1@NFKBIA!2.18!8840.34!NFKBIA;;chr3:101546827..101546847,+!p2@NFKBIZ!2.16!198.68!NFKBIZ;;chr2:70142232..70142251,+!p1@MXD1!2.15!751.12!MXD1;;chr12:72056800..72056834,+!p1@THAP2!2.15!187.47!THAP2;;chr4:103422499..103422632,+!p1@NFKB1!2.08!2309.42!NFKB1;;chr20:39317868..39317884,-!p1@MAFB!2.08!1330.97!MAFB;;chr10:51572408..51572454,+!p3@NCOA4!2.07!643.38!NCOA4;;chr6:106534192..106534224,+!p1@PRDM1!2.07!316.39!PRDM1;;chr10:64576105..64576133,-!p1@EGR2!2.04!217.99!EGR2;;chr12:54778471..54778528,-!p1@ZNF385A!2.04!109.62!ZNF385A;;chr21:34442439..34442455,+!p1@OLIG1!2.04!109.62!OLIG1;;chr18:77155922..77155939,+!p1@NFATC1!2.02!269.68!NFATC1;;chr2:61108695..61108753,+!p1@REL!1.99!624.69!REL;;chr2:68592394..68592405,+!p2@PLEK!1.98!95.29!PLEK;;chr11:47400032..47400043,-!p5@SPI1!1.98!94.05!SPI1;;chr21:30671690..30671762,+!p2@BACH1!1.97!299.58!BACH1;;chr2:145275162..145275202,-!p2@ZEB2!1.95!493.28!ZEB2;;chr1:38325227..38325246,-!p2@MTF1!1.94!114.60!MTF1;;chr12:72056749..72056767,+!p6@THAP2!1.94!94.67!THAP2;;chr3:101568349..101568365,+!p1@NFKBIZ!1.93!4030.91!NFKBIZ;;chr10:104155480..104155534,+!p2@NFKB2!1.93!511.96!NFKB2;;chr12:72056773..72056796,+!p3@THAP2!1.88!97.16!THAP2;;chr9:102584159..102584174,+!p2@NR4A3!1.87!129.55!NR4A3;;chr8:123793988..123794016,+!p1@ZHX2!1.87!125.81!ZHX2;;chr11:47399996..47400014,-!p4@SPI1!1.87!73.49!SPI1;;chr10:64018918..64018936,+!p2@ZNF365!1.87!72.87!ZNF365;;chr16:31885093..31885165,+!p1@ZNF267!1.80!896.86!ZNF267;;chr1:37940170..37940190,+!p1@ZC3H12A!1.80!716.87!ZC3H12A;;chr11:65430554..65430579,-!p3@RELA!1.80!151.97!RELA;;chr7:50344289..50344323,+!p1@IKZF1!1.80!62.28!IKZF1;;chr10:104154246..104154347,+!p3@NFKB2!1.78!346.91!NFKB2;;chr10:31288398..31288455,-!p2@ZNF438!1.78!67.89!ZNF438;;chrX:153305787..153305807,-!p3@MECP2!1.78!59.17!MECP2;;chr10:51572339..51572376,+!p4@NCOA4!1.76!123.94!NCOA4;;chr2:61108808..61108821,+!p3@REL!1.76!70.38!REL;;chr19:45971246..45971265,+!p1@FOSB!1.75!964.75!FOSB;;chr9:102584262..102584276,+!p1@NR4A3!1.75!119.58!NR4A3;;chr6:106534230..106534254,+!p2@PRDM1!1.73!129.55!PRDM1;;chr5:142782823..142782854,-!p3@NR3C1!1.73!74.74!NR3C1;;chr2:145277640..145277771,-!p1@ZEB2!1.72!647.74!ZEB2;;chr8:81397820..81397836,+!p2@ZBTB10!1.72!63.53!ZBTB10;;chr21:30673091..30673135,+!p7@BACH1!1.72!51.69!BACH1;;chr6:144385698..144385742,-!p2@PLAGL1!1.71!60.41!PLAGL1;;chr19:36391434..36391450,-!p1@NFKBID!1.68!89.06!NFKBID;;chr10:35484053..35484076,+!p1@CREM!1.67!109.62!CREM;;chr21:30671235..30671253,+!p1@BACH1!1.66!542.48!BACH1;;chr9:102584128..102584144,+!p3@NR4A3!1.66!82.84!NR4A3;;chr19:50432132..50432217,+!p2@ATF5!1.66!52.94!ATF5;;chr6:12012170..12012245,+!p1@HIVEP1!1.65!210.51!HIVEP1;;chr11:615942..615957,-!p1@IRF7!1.64!379.30!IRF7;;chr10:31288370..31288393,-!p3@ZNF438!1.64!42.35!ZNF438;;chr1:157108130..157108173,-!p1@ETV3!1.63!285.88!ETV3;;chr4:103423079..103423112,+!p4@NFKB1!1.62!41.11!NFKB1;;chr22:38597987..38598021,+!p2@MAFF!1.61!234.18!MAFF;;chr14:35872962..35873025,-!p3@NFKBIA!1.61!96.54!NFKBIA;;chr6:12012249..12012266,+!p5@HIVEP1!1.61!67.89!HIVEP1;;chr17:40440359..40440386,+!p4@STAT5A!1.61!39.86!STAT5A;;chr8:22550982..22550999,-!p1@EGR3!1.60!105.26!EGR3;;chr14:35872494..35872511,-!p5@NFKBIA!1.60!51.07!NFKBIA;;chr11:47399920..47399931,-!p7@SPI1!1.58!37.37!SPI1;;chr11:47400045..47400060,-!p6@SPI1!1.58!36.75!SPI1;;chr17:40440225..40440268,+!p3@STAT5A!1.56!44.84!STAT5A;;chr19:45252008..45252024,+!p2@BCL3!1.55!108.99!BCL3;;chr6:12011943..12012015,+!p2@HIVEP1!1.54!104.63!HIVEP1;;chr4:81104895..81104920,+!p2@PRDM8!1.54!49.20!PRDM8;;chr21:30672433..30672464,+!p6@BACH1!1.54!33.63!BACH1;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.54!33.63!ZBED1;;chr7:17338266..17338282,+!p1@AHR!1.53!335.08!AHR;;chr7:17338324..17338341,+!p3@AHR!1.53!106.50!AHR;;chr21:40177845..40177863,+!p1@ETS2!1.52!1818.64!ETS2;;chr2:61108771..61108789,+!p4@REL!1.52!48.58!REL;;chr14:35872926..35872951,-!p4@NFKBIA!1.52!44.84!NFKBIA;;chr10:104155680..104155687,+!p6@NFKB2!1.52!31.76!NFKB2;;chr6:44233252..44233296,-!p1@NFKBIE!1.51!292.73!NFKBIE;;chr20:48599506..48599526,+!p1@SNAI1!1.51!193.07!SNAI1;;chr6:15246200..15246214,+!p2@JARID2!1.51!84.70!JARID2;;chr11:34642612..34642646,+!p1@EHF!1.49!29.90!EHF;;chr3:39195037..39195069,-!p2@CSRNP1!1.48!172.52!CSRNP1;;chr12:48298765..48298783,-!p2@VDR!1.48!59.17!VDR;;chr4:103422811..103422822,+!p11@NFKB1!1.48!29.27!NFKB1;;chr3:12329397..12329433,+!p2@PPARG!1.47!63.53!PPARG;;chr1:25256756..25256774,-!p1@RUNX3!1.46!51.69!RUNX3;;chr2:68615063..68615089,+!p4@PLEK!1.46!28.03!PLEK;;chr9:129567282..129567353,+!p1@ZBTB43!1.45!338.19!ZBTB43;;chr12:11802753..11802834,+!p2@ETV6!1.45!127.68!ETV6;;chr3:37217736..37217753,-!p2@LRRFIP2!1.45!109.62!LRRFIP2;;chr2:145277882..145277967,-!p3@ZEB2!1.45!46.09!ZEB2;;chr7:115670792..115670797,-!p2@TFEC!1.45!27.40!TFEC;;chr1:212782094..212782109,+!p1@ATF3!1.44!695.07!ATF3;;chr13:41635029..41635044,-!p4@ELF1!1.43!54.19!ELF1;;chr2:185463247..185463263,+!p1@ZNF804A!1.43!45.47!ZNF804A;;chrX:129244454..129244488,-!p1@ELF4!1.42!175.64!ELF4;;chr4:106068026..106068084,+!p1@TET2!1.41!214.87!TET2;;chr8:72756637..72756664,-!p3@MSC!1.41!28.03!MSC;;chr4:103446567..103446592,+!p15@NFKB1!1.41!24.91!NFKB1;;chr3:170075436..170075520,+!p1@SKIL!1.40!500.13!SKIL;;chr16:69599899..69599919,+!p2@NFAT5!1.40!264.08!NFAT5;;chr19:19496539..19496576,+!p8@GATAD2A!1.40!41.73!GATAD2A;;chr13:41593425..41593480,-!p1@ELF1!1.39!146.36!ELF1;;chr1:38325256..38325280,-!p1@MTF1!1.39!140.76!MTF1;;chr6:143266297..143266356,-!p1@HIVEP2!1.38!107.75!HIVEP2;;chr21:36260295..36260310,-!p3@RUNX1!1.38!36.75!RUNX1;;chr11:65430535..65430549,-!p4@RELA!1.38!26.78!RELA;;chr4:103446513..103446530,+!p19@NFKB1!1.38!23.04!NFKB1;;chr17:38497662..38497713,+!p4@RARA!1.37!26.16!RARA;;chr12:52445218..52445237,+!p1@NR4A1!1.36!264.70!NR4A1;;chr2:73520667..73520683,-!p1@EGR4!1.36!21.80!EGR4;;chr8:72756063..72756125,-!p1@MSC!1.35!42.97!MSC;;chr11:615570..615721,-!p2@IRF7!1.35!41.73!IRF7;;chr10:104154415..104154434,+!p5@NFKB2!1.35!21.18!NFKB2;;chr20:48807351..48807384,+!p1@CEBPB!1.34!2069.64!CEBPB;;chr10:3827371..3827386,-!p2@KLF6!1.32!163.18!KLF6;;chr2:157189180..157189290,-!p1@NR4A2!1.32!102.14!NR4A2;;chr1:161736038..161736056,+!p4@ATF6!1.32!45.47!ATF6;;chr5:131826457..131826514,-!p1@IRF1!1.31!739.29!IRF1;;chr9:110252035..110252057,-!p1@KLF4!1.31!304.56!KLF4;;chr10:104155455..104155479,+!p1@NFKB2!1.31!277.16!NFKB2;;chr21:40177892..40177903,+!p2@ETS2!1.31!76.61!ETS2;;chr6:391743..391759,+!p1@IRF4!1.31!19.31!IRF4;;chr2:97202480..97202499,+!p1@ARID5A!1.30!185.60!ARID5A;;chr12:96588219..96588263,+!p2@ELK3!1.30!133.91!ELK3;;chr8:81397846..81397860,+!p3@ZBTB10!1.30!23.67!ZBTB10;;chr4:81105027..81105039,+!p3@PRDM8!1.30!21.80!PRDM8;;chr10:114709999..114710031,+!p1@TCF7L2!1.29!420.41!TCF7L2;;chr12:96588279..96588299,+!p4@ELK3!1.29!85.33!ELK3;;chr7:128577972..128578047,+!p1@IRF5!1.29!29.27!IRF5;;chr8:72756267..72756296,-!p4@MSC!1.29!26.78!MSC;;chr2:145275228..145275241,-!p11@ZEB2!1.29!22.42!ZEB2;;chr2:238600933..238600985,+!p3@LRRFIP1!1.28!96.54!LRRFIP1;;chr19:45250948..45250998,+!p3@BCL3!1.28!44.84!BCL3;;chr4:81104985..81105005,+!p4@PRDM8!1.27!21.18!PRDM8;;chr19:47616992..47617011,-!p4@ZC3H4!1.26!36.75!ZC3H4;;chr6:126240380..126240430,+!p2@NCOA7!1.25!42.97!NCOA7;;chr2:238600998..238601013,+!p5@LRRFIP1!1.25!16.82!LRRFIP1;;chr2:70142189..70142223,+!p2@MXD1!1.24!114.60!MXD1;;chr1:221052733..221052749,+!p2@HLX!1.24!21.18!HLX;;chr6:106535598..106535637,+!p7@PRDM1!1.24!16.19!PRDM1;;chr8:72755203..72755239,-!p10@MSC!1.24!16.19!MSC;;chr2:192015677..192015691,-!p3@STAT4!1.24!16.19!STAT4;;chr3:150126101..150126118,+!p6@TSC22D2!1.23!26.16!TSC22D2;;chr9:102584241..102584261,+!p4@NR4A3!1.23!24.91!NR4A3;;chr6:35310395..35310410,+!p2@PPARD!1.22!60.41!PPARD;;chr14:64970670..64970712,-!p3@ZBTB25!1.21!33.01!ZBTB25;;chr2:231084639..231084654,-!p2@SP110!1.21!24.91!SP110;;chr10:35416142..35416169,+!p3@CREM!1.20!39.24!CREM;;chr12:72056706..72056717,+!p10@THAP2!1.20!14.95!THAP2;;chr14:35872542..35872553,-!p10@NFKBIA!1.20!14.95!NFKBIA;;chrX:153305962..153305995,-!p5@MECP2!1.20!14.95!MECP2;;chr4:103423120..103423142,+!p8@NFKB1!1.20!14.95!NFKB1;;chr2:208394817..208394834,+!p3@CREB1!1.19!57.92!CREB1;;chr2:231090471..231090504,+!p2@SP140!1.19!14.32!SP140;;chr12:54778351..54778378,-!p6@ZNF385A!1.19!14.32!ZNF385A;;chrX:24167086..24167111,+!p4@ZFX!1.19!14.32!ZFX;;chr8:80679993..80680011,-!p1@HEY1!1.18!20.55!HEY1;;chr19:12902289..12902307,+!p1@JUNB!1.17!3097.92!JUNB;;chr14:75745523..75745537,+!p1@FOS!1.17!1618.09!FOS;;chr21:36260980..36261011,-!p1@RUNX1!1.17!388.64!RUNX1;;chr22:38598057..38598071,+!p3@MAFF!1.17!32.39!MAFF;;chr2:28618532..28618610,+!p4@FOSL2!1.17!23.67!FOSL2;;chr2:68615031..68615055,+!p3@PLEK!1.17!13.70!PLEK;;chr3:187455529..187455544,-!p5@BCL6!1.17!13.70!BCL6;;chrX:129244430..129244442,-!p5@ELF4!1.17!13.70!ELF4;;chr20:47894569..47894799,-!p1@ZNFX1!1.16!353.76!ZNFX1;;chr12:48298785..48298828,-!p1@VDR!1.16!71.62!VDR;;chr1:120190786..120190915,-!p1@ZNF697!1.15!93.42!ZNF697;;chr19:45504688..45504782,+!p1@RELB!1.15!79.72!RELB;;chr18:3449618..3449634,+!p13@TGIF1!1.15!16.19!TGIF1;;chr1:212873061..212873080,-!p4@BATF3!1.15!13.08!BATF3;;chrX:153305741..153305753,-!p4@MECP2!1.15!13.08!MECP2;;chr2:68615096..68615115,+!p5@PLEK!1.15!13.08!PLEK;;chr10:51575814..51575835,+!p8@NCOA4!1.15!13.08!NCOA4;;chr8:123875520..123875536,+!p7@ZHX2!1.15!13.08!ZHX2;;chr2:28615716..28615733,+!p1@FOSL2!1.14!596.66!FOSL2;;chr11:65430586..65430593,-!p5@RELA!1.14!14.32!RELA;;chr17:79885537..79885554,-!p2@MAFG!1.13!24.29!MAFG;;chr3:170075124..1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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000234;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000576;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000763;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000766;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000860;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002193;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002390;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002405
+|ffid_belonging_in_development=CL:0000049,CL:0000134,CL:0002057
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 35: / Line 42: @@
 |fonse_treatment_closure=FF:0000625,FF:0000633,FF:0011109,FF:11886-125D5
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Salmonella%252c%2520donor3.CNhs13493.11886-125D5.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Salmonella%252c%2520donor3.CNhs13493.11886-125D5.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Salmonella%252c%2520donor3.CNhs13493.11886-125D5.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Salmonella%252c%2520donor3.CNhs13493.11886-125D5.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Salmonella%252c%2520donor3.CNhs13493.11886-125D5.hg38.nobarcode.ctss.bed.gz
 |id=FF:11886-125D5
-|is_a=EFO:0002091;;FF:0000002;;FF:0000210;;FF:0011109
+|is_a=EFO:0002091;;FF:0011109
+|is_obsolete=
+|library_id=CNhs13493
+|library_id_phase_based=2:CNhs13493
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11886
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11886
 |name=CD14+ monocytes - treated with Salmonella, donor3
 |namespace=
@@ Line 42: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs13493,LSID1025,release012,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_box=125
 |rna_catalog_number=
@@ Line 57: / Line 79: @@
 |rna_weight_ug=3.41253
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+|sample_category=primary cells
 |sample_cell_catalog=
 |sample_cell_line=
@@ Line 77: / Line 100: @@
 |sample_tissue=
 |top_motifs=NFE2:5.19644665504;HLF:4.96427770975;FOS_FOS{B,L1}_JUN{B,D}:4.67315159414;NFKB1_REL_RELA:4.66389203477;BACH2:4.55952186466;NFE2L2:4.50774165851;CEBPA,B_DDIT3:4.50477146048;FOSL2:4.33964734515;PAX2:4.32583334106;IRF7:4.12465006853;IRF1,2:3.56765744804;FOXP3:3.44251240284;SPIB:3.40624375212;NFIL3:3.36142415288;SPI1:3.20612712322;ATF5_CREB3:3.17459899186;PAX8:3.08197606662;NANOG{mouse}:2.873046059;ATF4:2.86716610357;STAT2,4,6:2.74354250188;STAT5{A,B}:2.58418426792;ETS1,2:2.55111544862;NFATC1..3:2.5151303879;DMAP1_NCOR{1,2}_SMARC:2.49451408764;HSF1,2:2.41569056329;ATF6:2.36573748918;CREB1:2.34992137684;JUN:2.30280005969;RXRA_VDR{dimer}:2.25029060029;SREBF1,2:2.21904510535;PAX3,7:2.05791834811;FOXN1:2.05484802729;RUNX1..3:2.0460889454;ATF2:1.95096299486;NR1H4:1.80450751637;MAFB:1.78911550468;NFE2L1:1.71932334636;PDX1:1.7162728343;IKZF1:1.4536098156;CDX1,2,4:1.20594378576;POU2F1..3:1.1208336716;ALX4:1.09006518573;ELF1,2,4:1.01838833184;HMGA1,2:1.01583646583;PPARG:0.997772066218;OCT4_SOX2{dimer}:0.95965470455;ALX1:0.944169994174;HOX{A5,B5}:0.92795306942;PRDM1:0.755631023597;TBP:0.749817523324;TGIF1:0.742298669324;ZBTB16:0.740088216143;SRF:0.69898069429;XBP1:0.455093191319;EP300:0.450847596763;NKX3-1:0.408443338238;EN1,2:0.278914539701;STAT1,3:0.269542199328;RBPJ:0.240521357215;GLI1..3:0.178224772292;TLX2:0.163920245676;PITX1..3:0.142817197039;BPTF:0.132637736006;HBP1_HMGB_SSRP1_UBTF:0.118414106532;PAX1,9:0.0591144016424;SMAD1..7,9:-0.0368435279352;HOXA9_MEIS1:-0.0467088756162;EGR1..3:-0.0543537546216;FOXM1:-0.0872094757736;VSX1,2:-0.162105778919;POU5F1:-0.203010241456;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.204689839425;HIF1A:-0.208258745085;TFCP2:-0.233342075339;AHR_ARNT_ARNT2:-0.248823786579;FOXO1,3,4:-0.303304200602;HMX1:-0.314709158923;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.324026551055;GATA4:-0.368125406601;ESR1:-0.369162132391;NFIX:-0.38663792144;IKZF2:-0.436355137436;NR6A1:-0.457983519265;FOX{D1,D2}:-0.475389206181;POU3F1..4:-0.475493057403;NANOG:-0.501805516954;FOXL1:-0.517679070952;NR3C1:-0.537205996424;MEF2{A,B,C,D}:-0.54236043166;MYB:-0.586378977202;RORA:-0.625596863339;RFX2..5_RFXANK_RFXAP:-0.751620319123;PAX4:-0.784870975225;PAX6:-0.815147824439;SOX2:-0.841947626145;MZF1:-0.869192649173;FOXD3:-0.87505756953;HOX{A4,D4}:-0.87598415507;REST:-0.883015552881;FOXP1:-0.954105217341;ZNF384:-0.966154003514;POU6F1:-0.990922707051;HES1:-1.00449104446;CRX:-1.00609064228;HNF4A_NR2F1,2:-1.03966125246;DBP:-1.08435736945;HNF1A:-1.12721802891;NHLH1,2:-1.16445038334;MYFfamily:-1.22689634746;NKX6-1,2:-1.26943148847;SOX5:-1.27723320113;ZFP161:-1.31849994759;TBX4,5:-1.36681805549;MED-1{core}:-1.37717735643;ZNF238:-1.38894904129;PRRX1,2:-1.40928699649;ZNF148:-1.42060479412;ESRRA:-1.44946405725;GTF2A1,2:-1.44967913819;MTE{core}:-1.46650835827;TAL1_TCF{3,4,12}:-1.50760384892;RREB1:-1.50836846234;TFDP1:-1.52484029965;CDC5L:-1.53818792351;E2F1..5:-1.56024606539;TEAD1:-1.5614384837;FOXA2:-1.59019392225;GATA6:-1.59353677607;BREu{core}:-1.60774331694;SOX{8,9,10}:-1.62463669639;RXR{A,B,G}:-1.65966020855;CUX2:-1.66813170638;T:-1.71856620561;ADNP_IRX_SIX_ZHX:-1.72513695439;GTF2I:-1.73301035011;TLX1..3_NFIC{dimer}:-1.74908745004;PATZ1:-1.75329145415;RFX1:-1.75430867921;SPZ1:-1.77365695653;TFAP2B:-1.8125552601;GCM1,2:-1.82762050312;XCPE1{core}:-1.84064254703;TEF:-1.84201942547;TFAP4:-1.86307730065;ZBTB6:-1.86387985064;MYOD1:-1.87848126789;FOX{F1,F2,J1}:-1.88791003894;ONECUT1,2:-1.89473211579;TFAP2{A,C}:-1.91687693737;NKX2-2,8:-1.91695581456;GZF1:-2.0243036288;NKX3-2:-2.03824306839;SP1:-2.04825826469;TP53:-2.05947961585;NKX2-3_NKX2-5:-2.06272201414;ZEB1:-2.13212277445;ELK1,4_GABP{A,B1}:-2.15132229635;MAZ:-2.15322077865;ZIC1..3:-2.17883596972;MTF1:-2.18954329553;POU1F1:-2.21680161956;EBF1:-2.23293915902;KLF4:-2.23490068179;FOXQ1:-2.24308351545;MYBL2:-2.28514092849;SOX17:-2.38632787189;HOX{A6,A7,B6,B7}:-2.39179810821;HIC1:-2.39887584227;SNAI1..3:-2.44751343003;GFI1B:-2.46502884621;UFEwm:-2.48418987191;ZNF423:-2.53798108998;NKX2-1,4:-2.55464537952;NR5A1,2:-2.62078994979;FOX{I1,J2}:-2.74468216014;NFY{A,B,C}:-2.75356769612;AIRE:-2.75422042013;TOPORS:-2.83698112238;bHLH_family:-2.85625655275;PBX1:-2.86801959947;LMO2:-2.88244815748;PAX5:-2.93562011093;EVI1:-2.96128628913;LHX3,4:-3.2731111075;NRF1:-3.36540201328;GFI1:-3.54127788688;AR:-3.55207554742;YY1:-3.6014421916;ARID5B:-3.81769007263;LEF1_TCF7_TCF7L1,2:-3.89196802888;ZNF143:-3.95135384164;HAND1,2:-4.9025809489
+|xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11886-125D5;search_select_hide=table117:FF:11886-125D5
 }}

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FF:11886-125D5: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 18:26, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0