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{{UBERON
{{UBERON
|id=UBERON:0004120
|alt_id=
|name=mesoderm-derived structure
|namespace=
|def="An anatomical structure that develops (entirely or partially) from the mesoderm." [UBERON:cjm]
|xref=
|is_a=UBERON:0010317
|synonym=
|comment=Grouping term for query purposes
|comment=Grouping term for query purposes
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="An anatomical structure that develops (entirely or partially) from the mesoderm." [UBERON:cjm]
|subset=grouping_class
|derives_from=
|derives_from=
|develops_from=
|develops_from=UBERON:0000926
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0004120
|is_a=UBERON:0000061
|is_obsolete=
|located_in=
|located_in=
|name=mesoderm-derived structure
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=grouping_class
|preceded_by=
|synonym=
|union_of=
|xref=
}}
}}

Latest revision as of 17:43, 12 September 2014

Name:mesoderm-derived structure
Namespace:FANTOM
Definition:"An anatomical structure that develops (entirely or partially) from the mesoderm." [UBERON:cjm]
Comments:Grouping term for query purposes
Subset: grouping_class

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000061(anatomical structure)
develops_from:UBERON:0000926(mesoderm)



Children

is a:UBERON:0000042 (serous membrane),UBERON:0000056 (ureter),UBERON:0000057 (urethra),UBERON:0000074 (renal glomerulus),UBERON:0000077 (mixed endoderm/mesoderm-derived structure),UBERON:0000080 (mesonephros),UBERON:0000162 (cloaca),UBERON:0000305 (amnion),UBERON:0000412 (dermal papilla),UBERON:0000415 (artery wall),UBERON:0000946 (cardial valve),UBERON:0000948 (heart),UBERON:0000990 (reproductive system),UBERON:0001103 (diaphragm),UBERON:0001130 (vertebral column),UBERON:0001178 (visceral peritoneum),UBERON:0001235 (adrenal cortex),UBERON:0001236 (adrenal medulla),UBERON:0001255 (urinary bladder),UBERON:0001256 (wall of urinary bladder),UBERON:0001259 (mucosa of urinary bladder),UBERON:0001468 (intervertebral joint),UBERON:0001601 (extra-ocular muscle),UBERON:0001694 (petrous part of temporal bone),UBERON:0001703 (neurocranium),UBERON:0001839 (bony labyrinth),UBERON:0001844 (cochlea),UBERON:0001981 (blood vessel),UBERON:0001992 (papillary layer of dermis),UBERON:0002067 (dermis),UBERON:0002072 (hypodermis),UBERON:0002120 (pronephros),UBERON:0002190 (subcutaneous adipose tissue),UBERON:0002242 (nucleus pulposus),UBERON:0002319 (mesangium),UBERON:0002321 (extraglomerular mesangium),UBERON:0002328 (notochord),UBERON:0002331 (umbilical cord),UBERON:0002363 (dura mater),UBERON:0002385 (muscle tissue),UBERON:0002390 (hematopoietic system),UBERON:0002517 (basicranium),UBERON:0003077 (paraxial mesoderm),UBERON:0003081 (lateral plate mesoderm),UBERON:0003089 (sclerotome),UBERON:0003112 (olfactory region),UBERON:0003124 (chorion),UBERON:0003220 (metanephric mesenchyme),UBERON:0003422 (mesenchyme of umbilical cord),UBERON:0003688 (omentum)... further results

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004120 (mesoderm-derived structure), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
6.38e-40FFCP PHASE2:Hg19::chrX:153637534..153637567,-#_c2e8100d50c0adc4e0eecfbbc08bbdc5p1@DNASE1L1
6.38e-40FFCP PHASE1:Hg19::chrX:153637534..153637567,-#_c2e8100d50c0adc4e0eecfbbc08bbdc5p1@DNASE1L1
6.15e-39FFCP PHASE2:Hg19::chr1:228270784..228270847,+#_d66f81ef1a968667e6f80ec1a6d2bcf6p2@ARF1
6.15e-39FFCP PHASE1:Hg19::chr1:228270784..228270847,+#_d66f81ef1a968667e6f80ec1a6d2bcf6p2@ARF1
9.61e-38FFCP PHASE2:Hg19::chr12:54812992..54813035,-#_9a8131e6e6c8af551630285202bc5036p1@ITGA5
9.61e-38FFCP PHASE1:Hg19::chr12:54812992..54813035,-#_9a8131e6e6c8af551630285202bc5036p1@ITGA5
1.56e-36FFCP PHASE2:Hg19::chr7:143078379..143078454,+#_16a51478e4c3c04587df485fac0085cfp1@ZYX
1.56e-36FFCP PHASE1:Hg19::chr7:143078379..143078454,+#_16a51478e4c3c04587df485fac0085cfp1@ZYX
2.82e-36FFCP PHASE2:Hg19::chr4:103747936..103747993,-#_6241710e33cb19c4d15c2c8faaac20c1p6@UBE2D3
2.82e-36FFCP PHASE1:Hg19::chr4:103747936..103747993,-#_6241710e33cb19c4d15c2c8faaac20c1p6@UBE2D3
5.32e-36FFCP PHASE1:Hg19::chr15:90358115..90358195,-#_2e8b9808128d4af1e1fb5a7738c444cap3@ANPEP
5.32e-36FFCP PHASE2:Hg19::chr15:90358115..90358195,-#_2e8b9808128d4af1e1fb5a7738c444cap3@ANPEP
8.45e-36FFCP PHASE1:Hg19::chr5:180229791..180229829,-#_539cd179c2c4cccd853fe5444cff520bp1@MGAT1
8.45e-36FFCP PHASE2:Hg19::chr5:180229791..180229829,-#_539cd179c2c4cccd853fe5444cff520bp1@MGAT1
1.6e-35FFCP PHASE2:Hg19::chr11:504446..504486,-#_fe79a00f66484038e10ad0026e455613p4@RNH1
1.6e-35FFCP PHASE1:Hg19::chr11:504446..504486,-#_fe79a00f66484038e10ad0026e455613p4@RNH1
2.85e-35FFCP PHASE2:Hg19::chr19:44174330..44174355,-#_de5290ead407ec63da59caa22523d46fp2@PLAUR
2.85e-35FFCP PHASE1:Hg19::chr19:44174330..44174355,-#_de5290ead407ec63da59caa22523d46fp2@PLAUR
3.37e-35FFCP PHASE1:Hg19::chr1:21616690..21616719,-#_386a68fbe2061a840422daae90606a9cp4@ECE1
3.37e-35FFCP PHASE2:Hg19::chr1:21616690..21616719,-#_386a68fbe2061a840422daae90606a9cp4@ECE1
5.03e-35FFCP PHASE1:Hg19::chr7:143079458..143079487,+#_3b4b8104986876eead499918606fb6d5p4@ZYX
5.03e-35FFCP PHASE2:Hg19::chr7:143079458..143079487,+#_3b4b8104986876eead499918606fb6d5p4@ZYX
1.17e-34FFCP PHASE1:Hg19::chr4:15704679..15704733,+#_1cd73bb2280b2c190f4e67102790a044p1@BST1
1.17e-34FFCP PHASE2:Hg19::chr4:15704679..15704733,+#_1cd73bb2280b2c190f4e67102790a044p1@BST1
1.75e-34FFCP PHASE2:Hg19::chrX:153637522..153637533,-#_1746e8398ab7218089fd6379fb6fd762p4@DNASE1L1
1.75e-34FFCP PHASE1:Hg19::chrX:153637522..153637533,-#_1746e8398ab7218089fd6379fb6fd762p4@DNASE1L1
1.89e-34FFCP PHASE1:Hg19::chr19:50015870..50015934,+#_dd94cf526174030025339db141df48d4p2@FCGRT
1.89e-34FFCP PHASE2:Hg19::chr19:50015870..50015934,+#_dd94cf526174030025339db141df48d4p2@FCGRT
2.1e-34FFCP PHASE1:Hg19::chr12:54813229..54813273,-#_0f298a34295f411cd998bcc39c4e1ed8p3@ITGA5
2.1e-34FFCP PHASE2:Hg19::chr12:54813229..54813273,-#_0f298a34295f411cd998bcc39c4e1ed8p3@ITGA5
4.33e-34FFCP PHASE1:Hg19::chr19:44174310..44174329,-#_3f2d1b8ae27922107778c0191bccd7e6p1@PLAUR
4.33e-34FFCP PHASE2:Hg19::chr19:44174310..44174329,-#_3f2d1b8ae27922107778c0191bccd7e6p1@PLAUR
7.52e-34FFCP PHASE2:Hg19::chr1:221052776..221052799,+#_f619a14ef55f1e78421722fc4ea14692p1@HLX
7.52e-34FFCP PHASE1:Hg19::chr1:221052776..221052799,+#_f619a14ef55f1e78421722fc4ea14692p1@HLX
8.49e-34FFCP PHASE2:Hg19::chr4:159093517..159093533,-#_b1413464e64297d37fdc2972295dc883p1@FAM198B
8.49e-34FFCP PHASE1:Hg19::chr4:159093517..159093533,-#_b1413464e64297d37fdc2972295dc883p1@FAM198B
3.78e-33FFCP PHASE1:Hg19::chr15:90358048..90358103,-#_4aabb581bc69f390c3d1d90a426097b0p1@ANPEP
3.78e-33FFCP PHASE2:Hg19::chr15:90358048..90358103,-#_4aabb581bc69f390c3d1d90a426097b0p1@ANPEP
3.32e-32FFCP PHASE2:Hg19::chr7:97911007..97911027,+#_51edcff67e78f8087662ad3c40ff4bdcp3@BRI3
3.32e-32FFCP PHASE1:Hg19::chr7:97911007..97911027,+#_51edcff67e78f8087662ad3c40ff4bdcp3@BRI3
5.72e-32FFCP PHASE1:Hg19::chr7:97910981..97911006,+#_e13bcfff9a301d9cd665bb83b97049ebp1@BRI3
5.72e-32FFCP PHASE2:Hg19::chr7:97910981..97911006,+#_e13bcfff9a301d9cd665bb83b97049ebp1@BRI3
5.73e-32FFCP PHASE2:Hg19::chr19:54371114..54371180,+#_a109e000f58d8a925cd2faa66a619e88p1@MYADM
5.73e-32FFCP PHASE1:Hg19::chr19:54371114..54371180,+#_a109e000f58d8a925cd2faa66a619e88p1@MYADM
7.25e-32FFCP PHASE2:Hg19::chr4:103747996..103748022,-#_5e731a25649a1b8025ec6d1a9fcd542cp4@UBE2D3
7.25e-32FFCP PHASE1:Hg19::chr4:103747996..103748022,-#_5e731a25649a1b8025ec6d1a9fcd542cp4@UBE2D3
7.82e-32FFCP PHASE1:Hg19::chr19:50015936..50015981,+#_3cf65d96ebf7ecb377c82d23ffddebbep3@FCGRT
7.82e-32FFCP PHASE2:Hg19::chr19:50015936..50015981,+#_3cf65d96ebf7ecb377c82d23ffddebbep3@FCGRT
8.33e-32FFCP PHASE2:Hg19::chr8:134584101..134584143,-#_43cd1f089be69d23b77eed7fab21430fp2@ST3GAL1
8.33e-32FFCP PHASE1:Hg19::chr8:134584101..134584143,-#_43cd1f089be69d23b77eed7fab21430fp2@ST3GAL1
1.49e-31FFCP PHASE1:Hg19::chr7:143078652..143078754,+#_c0d47709141434a4aeac9bf2badd7d40p2@ZYX
1.49e-31FFCP PHASE2:Hg19::chr7:143078652..143078754,+#_c0d47709141434a4aeac9bf2badd7d40p2@ZYX
2.42e-31FFCP PHASE1:Hg19::chr1:17944856..17944906,+#_7fc3c50a978696142221dfbdd0c1d970p3@ARHGEF10L
2.42e-31FFCP PHASE2:Hg19::chr1:17944856..17944906,+#_7fc3c50a978696142221dfbdd0c1d970p3@ARHGEF10L
2.88e-31FFCP PHASE1:Hg19::chr12:65153154..65153171,-#_d230a4b6114260c92b23bd7ae77268a8p2@GNS
2.88e-31FFCP PHASE2:Hg19::chr12:65153154..65153171,-#_d230a4b6114260c92b23bd7ae77268a8p2@GNS
8.04e-31FFCP PHASE2:Hg19::chr1:221053049..221053075,+#_ae797ebccde076e210f26ab6ca1ea0d1p3@HLX
8.04e-31FFCP PHASE1:Hg19::chr1:221053049..221053075,+#_ae797ebccde076e210f26ab6ca1ea0d1p3@HLX
8.77e-31FFCP PHASE2:Hg19::chr1:87170448..87170539,+#_e76ff13f79be608165eb87c34c14bf4cp1@SH3GLB1
8.77e-31FFCP PHASE1:Hg19::chr1:87170448..87170539,+#_e76ff13f79be608165eb87c34c14bf4cp1@SH3GLB1
9.41e-31FFCP PHASE1:Hg19::chr10:104403641..104403699,+#_563a0200e18ccc46f2b716b7c951d861p@chr10:104403641..104403699, +
9.41e-31FFCP PHASE2:Hg19::chr10:104403641..104403699,+#_563a0200e18ccc46f2b716b7c951d861p@chr10:104403641..104403699, +
9.71e-31FFCP PHASE2:Hg19::chr4:80994210..80994284,-#_ddeec7e617dfc71be3646cb7465c1ffdp2@ANTXR2
9.71e-31FFCP PHASE1:Hg19::chr4:80994210..80994284,-#_ddeec7e617dfc71be3646cb7465c1ffdp2@ANTXR2
9.83e-31FFCP PHASE2:Hg19::chr4:122618095..122618161,-#_9ac25bd1d45e609b5116dd16f24d2ba9p1@ANXA5
9.83e-31FFCP PHASE1:Hg19::chr4:122618095..122618161,-#_9ac25bd1d45e609b5116dd16f24d2ba9p1@ANXA5
1.49e-30FFCP PHASE1:Hg19::chr9:130616952..130616973,-#_93ed591b3e81b87330d6d14328bea52ep3@ENG
1.49e-30FFCP PHASE2:Hg19::chr9:130616952..130616973,-#_93ed591b3e81b87330d6d14328bea52ep3@ENG
1.87e-30FFCP PHASE1:Hg19::chr1:20987936..20987969,-#_1f2937f34dae190bdb9c9b837e6dc9f8p2@DDOST
1.87e-30FFCP PHASE2:Hg19::chr1:20987936..20987969,-#_1f2937f34dae190bdb9c9b837e6dc9f8p2@DDOST
3.28e-30FFCP PHASE2:Hg19::chrX:46433193..46433237,+#_8433ad40fe02e8e2c13150a91c183a10p1@CHST7
3.28e-30FFCP PHASE1:Hg19::chrX:46433193..46433237,+#_8433ad40fe02e8e2c13150a91c183a10p1@CHST7
3.51e-30FFCP PHASE1:Hg19::chr17:81037473..81037498,+#_ed8359ff5f89a30ef1b96c39172e5087p1@METRNL
3.51e-30FFCP PHASE2:Hg19::chr17:81037473..81037498,+#_ed8359ff5f89a30ef1b96c39172e5087p1@METRNL
3.8e-30FFCP PHASE1:Hg19::chr6:146864960..146864999,+#_c02c7fa752e26e30163b491be03d6ac6p1@RAB32
3.8e-30FFCP PHASE2:Hg19::chr6:146864960..146864999,+#_c02c7fa752e26e30163b491be03d6ac6p1@RAB32
5.98e-30FFCP PHASE1:Hg19::chr3:50273625..50273655,+#_e6a472bed369c576fd67da90946c9765p1@GNAI2
5.98e-30FFCP PHASE2:Hg19::chr3:50273625..50273655,+#_e6a472bed369c576fd67da90946c9765p1@GNAI2
6.52e-30FFCP PHASE1:Hg19::chr7:143077956..143078096,-#_653a4396044c7d5c04d8aecec4b8642bp1@ENST00000429630
6.52e-30FFCP PHASE2:Hg19::chr7:143077956..143078096,-#_653a4396044c7d5c04d8aecec4b8642bp1@ENST00000429630
7.62e-30FFCP PHASE2:Hg19::chr9:35732119..35732199,-#_e1263e1100c72c067f27fed2c130ba40p1@TLN1
7.62e-30FFCP PHASE1:Hg19::chr9:35732119..35732199,-#_e1263e1100c72c067f27fed2c130ba40p1@TLN1
9.35e-30FFCP PHASE1:Hg19::chr5:114938090..114938226,-#_74913505d050632c3e344472474f2181p1@TICAM2, p2@TMED7-TICAM2
9.35e-30FFCP PHASE2:Hg19::chr5:114938090..114938226,-#_74913505d050632c3e344472474f2181p1@TICAM2, p2@TMED7-TICAM2
1.51e-29FFCP PHASE1:Hg19::chr1:59762730..59762773,+#_71d7a46dcf94d790ac6053829d7d8534p1@FGGY
1.51e-29FFCP PHASE2:Hg19::chr1:59762730..59762773,+#_71d7a46dcf94d790ac6053829d7d8534p1@FGGY
1.57e-29FFCP PHASE2:Hg19::chr11:67120956..67120972,-#_296fbdc92c86b20aec1f98a6c3ba0963p2@POLD4
1.57e-29FFCP PHASE1:Hg19::chr11:67120956..67120972,-#_296fbdc92c86b20aec1f98a6c3ba0963p2@POLD4
1.96e-29FFCP PHASE1:Hg19::chr11:504867..504925,-#_f32c12e18610522056af521897caedddp3@RNH1
1.96e-29FFCP PHASE2:Hg19::chr11:504867..504925,-#_f32c12e18610522056af521897caedddp3@RNH1
3.49e-29FFCP PHASE1:Hg19::chr4:159092525..159092574,-#_376b9e5df3ebdefa75c504d0ef73a403p4@FAM198B
3.49e-29FFCP PHASE2:Hg19::chr4:159092525..159092574,-#_376b9e5df3ebdefa75c504d0ef73a403p4@FAM198B
5.21e-29FFCP PHASE2:Hg19::chr3:148709310..148709337,+#_6b19620f80f06b3664151c101954a8adp1@GYG1
5.21e-29FFCP PHASE1:Hg19::chr3:148709310..148709337,+#_6b19620f80f06b3664151c101954a8adp1@GYG1
6.23e-29FFCP PHASE1:Hg19::chr8:146078927..146078951,-#_fee4afdee1d57f2162c849809599e4ddp4@COMMD5
6.23e-29FFCP PHASE2:Hg19::chr8:146078927..146078951,-#_fee4afdee1d57f2162c849809599e4ddp4@COMMD5
7.59e-29FFCP PHASE2:Hg19::chr4:10118348..10118395,-#_7ea0c0c0433fc75e34a2bc598c068f19p1@WDR1
7.59e-29FFCP PHASE1:Hg19::chr4:10118348..10118395,-#_7ea0c0c0433fc75e34a2bc598c068f19p1@WDR1
8.57e-29FFCP PHASE1:Hg19::chr12:53694132..53694153,-#_84dc8cf4deb5904e5a119cb9bac1ac6cp1@ENST00000550263
8.57e-29FFCP PHASE2:Hg19::chr12:53694132..53694153,-#_84dc8cf4deb5904e5a119cb9bac1ac6cp1@ENST00000550263

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