FF:11621-122B1: Difference between revisions

Latest revision as of 18:12, 4 June 2020

Name:	Smooth Muscle Cells - Umbilical Vein, donor2
Species:	Human (Homo sapiens)
Library ID:	CNhs12569
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	umbilical vein
dev stage	NA
sex	NA
age	NA
cell type	smooth muscle cell
cell line	NA
company	Sciencell/3H
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	6757
catalog number	SC8025
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00004772

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12569		CAGE		DRX008511		DRR009383

Accession ID Hg19

Library id		BAM		CTSS
CNhs12569		DRZ000808		DRZ002193

Accession ID Hg38

Library id		BAM		CTSS
CNhs12569		DRZ012158		DRZ013543

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.199
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.153
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.208
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0.201
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	-0.079
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.197
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.508
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0.0407
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.252
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.134
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.185
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0.174
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.287
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	-0.012
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.699
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0.112
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	-0.0522
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.669
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.273
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.0919
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.0407
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.112
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.434
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.0407
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.885
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.472
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.513
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12569

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.846
MA0003.1	MA0003.1	0.227
MA0004.1	MA0004.1	0.149
MA0006.1	MA0006.1	0.068
MA0007.1	MA0007.1	0.227
MA0009.1	MA0009.1	0.359
MA0014.1	MA0014.1	0.74
MA0017.1	MA0017.1	0.414
MA0018.2	MA0018.2	6.37147e-5
MA0019.1	MA0019.1	0.265
MA0024.1	MA0024.1	5.57411e-6
MA0025.1	MA0025.1	0.0247
MA0027.1	MA0027.1	0.919
MA0028.1	MA0028.1	0.798
MA0029.1	MA0029.1	0.434
MA0030.1	MA0030.1	0.0135
MA0031.1	MA0031.1	0.0502
MA0035.2	MA0035.2	0.192
MA0038.1	MA0038.1	0.235
MA0039.2	MA0039.2	0.993
MA0040.1	MA0040.1	0.593
MA0041.1	MA0041.1	0.65
MA0042.1	MA0042.1	0.621
MA0043.1	MA0043.1	0.0573
MA0046.1	MA0046.1	0.594
MA0047.2	MA0047.2	0.24
MA0048.1	MA0048.1	0.0946
MA0050.1	MA0050.1	1.62217e-7
MA0051.1	MA0051.1	0.00816
MA0052.1	MA0052.1	0.0581
MA0055.1	MA0055.1	0.112
MA0057.1	MA0057.1	0.851
MA0058.1	MA0058.1	0.065
MA0059.1	MA0059.1	0.56
MA0060.1	MA0060.1	0.615
MA0061.1	MA0061.1	0.831
MA0062.2	MA0062.2	2.3094e-4
MA0065.2	MA0065.2	0.3
MA0066.1	MA0066.1	0.317
MA0067.1	MA0067.1	1.65124e-4
MA0068.1	MA0068.1	0.894
MA0069.1	MA0069.1	0.63
MA0070.1	MA0070.1	0.344
MA0071.1	MA0071.1	0.167
MA0072.1	MA0072.1	0.875
MA0073.1	MA0073.1	0.412
MA0074.1	MA0074.1	0.839
MA0076.1	MA0076.1	0.0606
MA0077.1	MA0077.1	0.79
MA0078.1	MA0078.1	0.588
MA0079.2	MA0079.2	0.686
MA0080.2	MA0080.2	7.0633e-9
MA0081.1	MA0081.1	0.00972
MA0083.1	MA0083.1	0.00325
MA0084.1	MA0084.1	0.18
MA0087.1	MA0087.1	0.546
MA0088.1	MA0088.1	0.251
MA0090.1	MA0090.1	4.26545e-5
MA0091.1	MA0091.1	0.0435
MA0092.1	MA0092.1	0.0668
MA0093.1	MA0093.1	0.146
MA0099.2	MA0099.2	0.794
MA0100.1	MA0100.1	0.855
MA0101.1	MA0101.1	0.654
MA0102.2	MA0102.2	0.407
MA0103.1	MA0103.1	0.0699
MA0104.2	MA0104.2	0.39
MA0105.1	MA0105.1	0.257
MA0106.1	MA0106.1	0.0186
MA0107.1	MA0107.1	0.735
MA0108.2	MA0108.2	0.0208
MA0111.1	MA0111.1	0.732
MA0112.2	MA0112.2	0.0168
MA0113.1	MA0113.1	0.0362
MA0114.1	MA0114.1	0.215
MA0115.1	MA0115.1	0.152
MA0116.1	MA0116.1	0.484
MA0117.1	MA0117.1	0.853
MA0119.1	MA0119.1	0.117
MA0122.1	MA0122.1	0.658
MA0124.1	MA0124.1	0.372
MA0125.1	MA0125.1	0.984
MA0131.1	MA0131.1	0.342
MA0135.1	MA0135.1	0.193
MA0136.1	MA0136.1	4.72439e-8
MA0137.2	MA0137.2	0.266
MA0138.2	MA0138.2	0.744
MA0139.1	MA0139.1	0.946
MA0140.1	MA0140.1	0.134
MA0141.1	MA0141.1	0.642
MA0142.1	MA0142.1	0.601
MA0143.1	MA0143.1	0.613
MA0144.1	MA0144.1	0.634
MA0145.1	MA0145.1	0.184
MA0146.1	MA0146.1	0.401
MA0147.1	MA0147.1	0.446
MA0148.1	MA0148.1	0.946
MA0149.1	MA0149.1	0.764
MA0150.1	MA0150.1	0.137
MA0152.1	MA0152.1	0.115
MA0153.1	MA0153.1	0.554
MA0154.1	MA0154.1	0.284
MA0155.1	MA0155.1	0.546
MA0156.1	MA0156.1	4.64455e-5
MA0157.1	MA0157.1	0.194
MA0159.1	MA0159.1	0.913
MA0160.1	MA0160.1	0.599
MA0162.1	MA0162.1	0.0404
MA0163.1	MA0163.1	0.00655
MA0164.1	MA0164.1	0.845
MA0258.1	MA0258.1	0.73
MA0259.1	MA0259.1	0.284

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12569

Novel motif	Logo	P-value
1	1	0.281
10	10	0.602
100	100	0.367
101	101	0.833
102	102	0.115
103	103	0.304
104	104	0.376
105	105	0.409
106	106	0.0901
107	107	0.00883
108	108	0.372
109	109	0.152
11	11	0.287
110	110	0.201
111	111	0.976
112	112	0.38
113	113	0.964
114	114	0.478
115	115	0.979
116	116	0.0357
117	117	0.975
118	118	0.358
119	119	0.983
12	12	0.555
120	120	0.425
121	121	0.963
122	122	0.424
123	123	0.00815
124	124	0.913
125	125	0.335
126	126	0.774
127	127	0.265
128	128	0.183
129	129	0.863
13	13	0.794
130	130	0.302
131	131	0.874
132	132	0.513
133	133	0.267
134	134	0.263
135	135	0.821
136	136	0.931
137	137	0.00769
138	138	0.712
139	139	0.798
14	14	0.414
140	140	0.368
141	141	0.622
142	142	0.691
143	143	0.126
144	144	0.274
145	145	0.59
146	146	0.124
147	147	0.113
148	148	0.906
149	149	0.0508
15	15	0.663
150	150	0.339
151	151	0.462
152	152	0.021
153	153	0.567
154	154	0.715
155	155	0.0655
156	156	0.636
157	157	0.326
158	158	0.0946
159	159	0.61
16	16	0.0409
160	160	0.136
161	161	0.776
162	162	0.648
163	163	0.453
164	164	0.252
165	165	0.231
166	166	0.0615
167	167	0.689
168	168	0.491
169	169	0.0904
17	17	0.182
18	18	0.0683
19	19	0.0448
2	2	0.381
20	20	0.743
21	21	0.309
22	22	0.204
23	23	0.653
24	24	0.502
25	25	0.222
26	26	0.513
27	27	0.516
28	28	0.383
29	29	0.926
3	3	0.443
30	30	0.342
31	31	0.197
32	32	2.66187e-8
33	33	0.281
34	34	0.581
35	35	0.748
36	36	0.638
37	37	0.0295
38	38	0.736
39	39	0.325
4	4	0.724
40	40	0.105
41	41	0.366
42	42	0.916
43	43	0.345
44	44	0.707
45	45	0.476
46	46	0.336
47	47	0.851
48	48	0.351
49	49	0.3
5	5	0.575
50	50	0.404
51	51	0.29
52	52	0.664
53	53	0.472
54	54	0.517
55	55	0.377
56	56	0.694
57	57	0.548
58	58	0.171
59	59	0.206
6	6	0.813
60	60	0.988
61	61	0.324
62	62	0.292
63	63	0.197
64	64	0.669
65	65	0.625
66	66	0.381
67	67	0.637
68	68	0.83
69	69	0.964
7	7	0.82
70	70	0.587
71	71	0.541
72	72	0.694
73	73	0.0332
74	74	0.792
75	75	0.931
76	76	0.564
77	77	0.103
78	78	0.759
79	79	0.0254
8	8	0.0705
80	80	0.283
81	81	0.734
82	82	0.972
83	83	0.288
84	84	0.311
85	85	0.14
86	86	0.821
87	87	0.203
88	88	0.369
89	89	0.185
9	9	0.71
90	90	0.625
91	91	0.479
92	92	0.15
93	93	0.8
94	94	0.131
95	95	0.0809
96	96	0.913
97	97	0.708
98	98	0.445
99	99	5.89335e-4

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12569

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000177 human smooth muscle cell of umbilical vein sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000192 (smooth muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0000359 (vascular associated smooth muscle cell)
0002588 (smooth muscle cell of the umbilical vein)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001638 (vein)
0000483 (epithelium)
0000479 (tissue)
0000055 (vessel)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0010260 (umbilical blood vessel)
0003920 (venous blood vessel)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0002049 (vasculature)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0002066 (umbilical vein)
0004535 (cardiovascular system)
0004537 (blood vasculature)
0004582 (venous system)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000167 (smooth muscle cell sample)
0000177 (human smooth muscle cell of umbilical vein sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000514 (smooth muscle myoblast)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0001134,UBERON:0001638,UBERON:0002100,UBERON:0000483,UBERON:0000926,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0000475,UBERON:0004120,UBERON:0000025,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0003914,UBERON:0002050,UBERON:0005423,UBERON:0000477,UBERON:0000481,UBERON:0000467,UBERON:0001062,UBERON:0000119,UBERON:0000490,UBERON:0005291,UBERON:0002036,UBERON:0002385,UBERON:0001981,UBERON:0003920,UBERON:0002049,UBERON:0000486,UBERON:0007500,UBERON:0003104,UBERON:0000914,UBERON:0005256,UBERON:0006598,UBERON:0007798,UBERON:0001015,UBERON:0002532,UBERON:0002066,UBERON:0002329,UBERON:0002204,UBERON:0004535,UBERON:0000383,UBERON:0004537,UBERON:0003077,UBERON:0004290,UBERON:0009142,UBERON:0004582,UBERON:0003081,UBERON:0001009,UBERON:0006603,UBERON:0003082,UBERON:0004872,UBERON:0006965,UBERON:0003059,UBERON:0007282,UBERON:0009618,UBERON:0007285
+|DRA_sample_Accession=CAGE@SAMD00004772
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000055,CL:0000144,CL:0000723,CL:0000048,CL:0000548,CL:0000034,CL:0000012,CL:0000680,CL:0002321,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000220,CL:0000004,CL:0000192,CL:0000211,CL:0000056,CL:0000255,CL:0000359,CL:0000222,CL:0002588,CL:0000355,CL:0000514
+|accession_numbers=CAGE;DRX008511;DRR009383;DRZ000808;DRZ002193;DRZ012158;DRZ013543
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001638,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0010260,UBERON:0003920,UBERON:0007500,UBERON:0001981,UBERON:0002049,UBERON:0010317,UBERON:0007798,UBERON:0002066,UBERON:0004535,UBERON:0004537,UBERON:0004582,UBERON:0001009
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0000359,CL:0002588
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000167,FF:0000177
 |comment=
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr4:174451370..174451387,-!p1@HAND2!1.91!80.66!HAND2;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.75!54.72!HOXC5;;chr4:111544219..111544240,-!p1@PITX2!1.50!30.95!PITX2;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!1.49!29.87!SEBOX;;chr7:35293685..35293718,-!p1@TBX20!1.48!29.08!TBX20;;chr12:54402745..54402788,+!p1@HOXC8!1.47!28.79!HOXC8;;chr4:111558135..111558198,-!p2@PITX2!1.44!26.82!PITX2;;chr11:61520075..61520136,+!p1@C11orf9!1.37!46.57!C11orf9;;chr11:46299199..46299233,+!p1@CREB3L1!1.36!108.86!CREB3L1;;chr7:27224795..27224840,-!p2@HOXA11!1.32!19.75!HOXA11;;chr19:46801639..46801699,+!p1@HIF3A!1.31!19.45!HIF3A;;chr2:176969228..176969260,+!p1@HOXD11!1.26!17.39!HOXD11;;chr7:19157248..19157268,-!p1@TWIST1!1.25!46.18!TWIST1;;chr7:27224842..27224872,-!p1@HOXA11!1.25!16.60!HOXA11;;chr4:174450089..174450153,-!p2@HAND2!1.20!15.03!HAND2;;chr12:54378923..54378966,+!p1@HOXC10!1.15!13.07!HOXC10;;chr18:19749386..19749404,+!p2@GATA6!1.14!18.18!GATA6;;chr5:134369905..134369972,-!p1@PITX1!1.11!18.37!PITX1;;chr11:46299539..46299620,+!p2@CREB3L1!1.10!19.85!CREB3L1;;chr15:83953397..83953425,-!p1@BNC1!1.08!12.77!BNC1;;chr12:54393880..54393962,+!p1@HOXC9!1.07!10.81!HOXC9;;chr12:66218598..66218645,+!p2@HMGA2!1.05!47.75!HMGA2;;chr12:66218255..66218304,+!p3@HMGA2!1.03!26.23!HMGA2;;chr17:26697304..26697335,-!p1@SEBOX,p1@VTN!1.03!9.82!SEBOX;;chr7:26191809..26191890,+!p1@NFE2L3!1.00!45.00!NFE2L3;;chr5:92918919..92918942,+!p1@NR2F1!1.00!40.97!NR2F1;;chr18:19749541..19749557,+!p1@GATA6!0.99!28.39!GATA6;;chr12:54402790..54402805,+!p2@HOXC8!0.99!8.74!HOXC8;;chr12:66218836..66218888,+!p1@HMGA2!0.97!79.19!HMGA2;;chr16:86544113..86544145,+!p1@FOXF1!0.97!10.51!FOXF1;;chr9:77112244..77112262,+!p1@RORB!0.96!9.14!RORB;;chr4:174451350..174451363,-!p3@HAND2!0.96!8.15!HAND2;;chr16:86600426..86600441,+!p1@FOXC2!0.95!19.94!FOXC2;;chr5:134369879..134369898,-!p2@PITX1!0.90!6.88!PITX1;;chr6:134210243..134210257,+!p1@TCF21!0.90!6.88!TCF21;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.89!6.78!HOXC5;;chr14:62162285..62162296,+!p3@HIF1A!0.87!34.88!HIF1A;;chrY:21906594..21906622,-!p1@KDM5D!0.87!6.39!KDM5D;;chr8:49833948..49833973,-!p2@SNAI2!0.86!41.95!SNAI2;;chr7:27239703..27239715,-!p1@HOXA13!0.85!6.09!HOXA13;;chr14:62162258..62162269,+!p2@HIF1A!0.84!61.01!HIF1A;;chr12:54402729..54402743,+!p3@HOXC8!0.84!5.99!HOXC8;;chr11:113930425..113930471,+!p1@ZBTB16!0.83!8.65!ZBTB16;;chr12:54379029..54379057,+!p2@HOXC10!0.83!5.80!HOXC10;;chr7:27205136..27205164,-!p1@HOXA9!0.83!5.70!HOXA9;;chr17:46682321..46682362,-!p1@HOXB6!0.82!5.60!HOXB6;;chr15:42749722..42749739,-!p2@ZFP106!0.81!10.22!ZFP106;;chr8:49833978..49833996,-!p1@SNAI2!0.78!112.00!SNAI2;;chr5:92919100..92919135,+!p3@NR2F1!0.78!6.19!NR2F1;;chr7:27213893..27213954,-!p1@HOXA10!0.78!5.01!HOXA10;;chr4:111544254..111544270,-!p3@PITX2!0.78!5.01!PITX2;;chr12:54380404..54380433,+!p3@HOXC10!0.77!4.91!HOXC10;;chr8:48650715..48650735,-!p1@CEBPD!0.76!669.57!CEBPD;;chr7:27205106..27205134,-!p2@HOXA9!0.76!4.81!HOXA9;;chr2:176969179..176969226,+!p2@HOXD11!0.76!4.81!HOXD11;;chr4:111558118..111558133,-!p5@PITX2!0.76!4.81!PITX2;;chr2:19558373..19558392,-!p1@OSR1!0.75!13.75!OSR1;;chr1:151032860..151032918,+!p1@MLLT11!0.72!56.89!MLLT11;;chr1:170633348..170633399,+!p2@PRRX1!0.71!5.89!PRRX1;;chr2:176994408..176994492,+!p1@HOXD8!0.70!4.03!HOXD8;;chr7:27196267..27196311,-!p1@HOXA7!0.70!4.03!HOXA7;;chr2:5832508..5832524,+!p1@SOX11!0.67!3.64!SOX11;;chrY:2803415..2803468,+!p1@ZFY!0.67!3.64!ZFY;;chr5:92918894..92918912,+!p2@NR2F1!0.66!13.36!NR2F1;;chr17:59477233..59477263,+!p1@TBX2!0.66!12.48!TBX2;;chr12:66218212..66218244,+!p5@HMGA2!0.66!5.50!HMGA2;;chr5:92918956..92918969,+!p4@NR2F1!0.66!4.03!NR2F1;;chr12:54380036..54380091,+!p4@HOXC10!0.65!3.44!HOXC10;;chr15:57511609..57511651,+!p2@TCF12!0.64!6.09!TCF12;;chr10:63809013..63809041,+!p3@ARID5B!0.63!21.42!ARID5B;;chr9:35732647..35732678,+!p2@CREB3!0.63!21.03!CREB3;;chr21:30671690..30671762,+!p2@BACH1!0.63!12.87!BACH1;;chr7:19157043..19157088,-!p2@TWIST1!0.63!9.24!TWIST1;;chr7:27192185..27192209,-!p1@HOXA3!0.63!3.24!HOXA3;;chr14:62162224..62162254,+!p1@HIF1A!0.62!558.25!HIF1A;;chr19:46800289..46800327,+!p2@HIF3A!0.62!3.14!HIF3A;;chr1:158979872..158979898,+!p3@IFI16!0.61!11.00!IFI16;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.61!3.34!GLIS1;;chr5:92918768..92918783,+!p8@NR2F1!0.61!3.05!NR2F1;;chr5:72744594..72744609,-!p1@FOXD1!0.60!16.01!FOXD1;;chr3:168864315..168864339,-!p2@MECOM!0.60!5.31!MECOM;;chr17:46132044..46132080,+!p4@NFE2L1!0.60!2.95!NFE2L1;;chr17:46703687..46703740,-!p1@HOXB9!0.60!2.95!HOXB9;;chr5:72744445..72744466,-!p2@FOXD1!0.59!5.31!FOXD1;;chr11:12696071..12696086,+!p3@TEAD1!0.59!4.03!TEAD1;;chr7:1577899..1577943,+!p3@MAFK!0.59!2.85!MAFK;;chr7:27239740..27239759,-!p2@HOXA13!0.59!2.85!HOXA13;;chr6:108882109..108882173,+!p2@FOXO3!0.58!18.27!FOXO3;;chr16:8962202..8962222,-!p3@CARHSP1!0.58!5.60!CARHSP1;;chr17:46688334..46688385,-!p1@HOXB7!0.58!4.32!HOXB7;;chr17:59477275..59477286,+!p3@TBX2!0.58!3.93!TBX2;;chr17:357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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000056;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000187;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000192;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000359;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002588;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001638;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001981;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002385;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007798;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0010260
+|ffid_belonging_in_development=CL:0000355,CL:0000222,CL:0000514
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 35: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Umbilical%2520Vein%252c%2520donor2.CNhs12569.11621-122B1.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Umbilical%2520Vein%252c%2520donor2.CNhs12569.11621-122B1.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Umbilical%2520Vein%252c%2520donor2.CNhs12569.11621-122B1.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Umbilical%2520Vein%252c%2520donor2.CNhs12569.11621-122B1.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Umbilical%2520Vein%252c%2520donor2.CNhs12569.11621-122B1.hg38.nobarcode.ctss.bed.gz
 |id=FF:11621-122B1
 |is_a=EFO:0002091;;FF:0000177
 |is_obsolete=
+|library_id=CNhs12569
+|library_id_phase_based=2:CNhs12569
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11621
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11621
 |name=Smooth Muscle Cells - Umbilical Vein, donor2
 |namespace=FANTOM5
@@ Line 43: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12569,LSID917,release011,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_catalog_number=SC8025
@@ Line 58: / Line 79: @@
 |rna_weight_ug=10
 |sample_age=
+|sample_category=primary cells
 |sample_cell_catalog=N/A
 |sample_cell_line=
@@ Line 79: / Line 101: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11621-122B1;search_select_hide=table117:FF:11621-122B1
 }}

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FF:11621-122B1: Difference between revisions

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Latest revision as of 18:12, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0