FF:10482-107A5: Difference between revisions

Latest revision as of 14:26, 3 June 2020

Name:	breast carcinoma cell line:MCF7
Species:	Human (Homo sapiens)
Library ID:	CNhs11943
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	breast
dev stage	NA
sex	female
age	69
cell type	unclassifiable
cell line	MCF7
company	RIKEN Bioresource centre
collaboration	Yukio Nakamura (RIKEN BRC)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005638

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11943		CAGE		DRX007837		DRR008709

Accession ID Hg19

Library id		BAM		CTSS
CNhs11943		DRZ000134		DRZ001519

Accession ID Hg38

Library id		BAM		CTSS
CNhs11943		DRZ011484		DRZ012869

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.127
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.205
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.0585
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.292
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0.615
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.521
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.497
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0.108
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.19
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	1.203
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0.182
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.283
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.251
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11943

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.00977
MA0003.1	MA0003.1	0.252
MA0004.1	MA0004.1	0.0111
MA0006.1	MA0006.1	0.871
MA0007.1	MA0007.1	0.81
MA0009.1	MA0009.1	0.876
MA0014.1	MA0014.1	0.223
MA0017.1	MA0017.1	0.0544
MA0018.2	MA0018.2	0.775
MA0019.1	MA0019.1	0.267
MA0024.1	MA0024.1	0.00553
MA0025.1	MA0025.1	0.919
MA0027.1	MA0027.1	0.953
MA0028.1	MA0028.1	0.181
MA0029.1	MA0029.1	0.332
MA0030.1	MA0030.1	0.162
MA0031.1	MA0031.1	0.422
MA0035.2	MA0035.2	0.914
MA0038.1	MA0038.1	0.0186
MA0039.2	MA0039.2	0.352
MA0040.1	MA0040.1	0.259
MA0041.1	MA0041.1	0.506
MA0042.1	MA0042.1	0.615
MA0043.1	MA0043.1	0.251
MA0046.1	MA0046.1	0.313
MA0047.2	MA0047.2	0.00838
MA0048.1	MA0048.1	0.816
MA0050.1	MA0050.1	6.33121e-12
MA0051.1	MA0051.1	1.70307e-6
MA0052.1	MA0052.1	0.0117
MA0055.1	MA0055.1	0.436
MA0057.1	MA0057.1	0.659
MA0058.1	MA0058.1	0.0232
MA0059.1	MA0059.1	0.313
MA0060.1	MA0060.1	1.43175e-7
MA0061.1	MA0061.1	8.60468e-5
MA0062.2	MA0062.2	0.292
MA0065.2	MA0065.2	0.321
MA0066.1	MA0066.1	0.337
MA0067.1	MA0067.1	0.269
MA0068.1	MA0068.1	0.822
MA0069.1	MA0069.1	0.825
MA0070.1	MA0070.1	0.861
MA0071.1	MA0071.1	0.394
MA0072.1	MA0072.1	0.822
MA0073.1	MA0073.1	0.938
MA0074.1	MA0074.1	0.917
MA0076.1	MA0076.1	0.0347
MA0077.1	MA0077.1	0.945
MA0078.1	MA0078.1	0.279
MA0079.2	MA0079.2	0.44
MA0080.2	MA0080.2	5.52519e-10
MA0081.1	MA0081.1	0.0126
MA0083.1	MA0083.1	0.0128
MA0084.1	MA0084.1	0.528
MA0087.1	MA0087.1	0.833
MA0088.1	MA0088.1	0.295
MA0090.1	MA0090.1	0.674
MA0091.1	MA0091.1	0.0521
MA0092.1	MA0092.1	0.273
MA0093.1	MA0093.1	0.0165
MA0099.2	MA0099.2	1.01243e-6
MA0100.1	MA0100.1	0.75
MA0101.1	MA0101.1	0.00401
MA0102.2	MA0102.2	0.0142
MA0103.1	MA0103.1	5.93851e-7
MA0104.2	MA0104.2	0.296
MA0105.1	MA0105.1	1.08241e-5
MA0106.1	MA0106.1	0.366
MA0107.1	MA0107.1	1.80688e-4
MA0108.2	MA0108.2	0.00894
MA0111.1	MA0111.1	0.658
MA0112.2	MA0112.2	0.133
MA0113.1	MA0113.1	0.361
MA0114.1	MA0114.1	0.334
MA0115.1	MA0115.1	0.849
MA0116.1	MA0116.1	0.00175
MA0117.1	MA0117.1	0.423
MA0119.1	MA0119.1	0.472
MA0122.1	MA0122.1	0.835
MA0124.1	MA0124.1	0.311
MA0125.1	MA0125.1	0.0682
MA0131.1	MA0131.1	0.154
MA0135.1	MA0135.1	0.244
MA0136.1	MA0136.1	2.43013e-7
MA0137.2	MA0137.2	0.0618
MA0138.2	MA0138.2	0.21
MA0139.1	MA0139.1	0.562
MA0140.1	MA0140.1	0.915
MA0141.1	MA0141.1	0.527
MA0142.1	MA0142.1	0.237
MA0143.1	MA0143.1	0.52
MA0144.1	MA0144.1	0.0726
MA0145.1	MA0145.1	0.689
MA0146.1	MA0146.1	0.895
MA0147.1	MA0147.1	0.257
MA0148.1	MA0148.1	0.0573
MA0149.1	MA0149.1	0.286
MA0150.1	MA0150.1	0.00127
MA0152.1	MA0152.1	0.861
MA0153.1	MA0153.1	0.673
MA0154.1	MA0154.1	0.00957
MA0155.1	MA0155.1	0.0993
MA0156.1	MA0156.1	2.83618e-4
MA0157.1	MA0157.1	0.961
MA0159.1	MA0159.1	0.648
MA0160.1	MA0160.1	0.693
MA0162.1	MA0162.1	0.164
MA0163.1	MA0163.1	4.09401e-5
MA0164.1	MA0164.1	0.401
MA0258.1	MA0258.1	0.761
MA0259.1	MA0259.1	0.106

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11943

Novel motif	Logo	P-value
1	1	0.73
10	10	0.497
100	100	0.946
101	101	0.35
102	102	0.482
103	103	0.113
104	104	0.485
105	105	0.0744
106	106	0.09
107	107	0.438
108	108	0.524
109	109	0.883
11	11	0.296
110	110	0.627
111	111	0.802
112	112	0.511
113	113	0.173
114	114	0.153
115	115	0.31
116	116	0.259
117	117	0.708
118	118	0.252
119	119	0.506
12	12	0.403
120	120	0.861
121	121	0.225
122	122	0.284
123	123	0.136
124	124	0.0875
125	125	0.613
126	126	0.759
127	127	0.984
128	128	0.217
129	129	0.524
13	13	0.745
130	130	0.485
131	131	0.228
132	132	0.958
133	133	0.00212
134	134	0.382
135	135	0.232
136	136	0.0213
137	137	0.152
138	138	0.308
139	139	0.864
14	14	0.891
140	140	0.705
141	141	0.15
142	142	0.608
143	143	0.00982
144	144	0.558
145	145	0.43
146	146	0.183
147	147	0.941
148	148	0.075
149	149	0.108
15	15	0.752
150	150	0.815
151	151	0.234
152	152	0.334
153	153	0.797
154	154	0.869
155	155	0.166
156	156	0.896
157	157	0.497
158	158	0.426
159	159	0.685
16	16	0.336
160	160	0.318
161	161	0.356
162	162	0.302
163	163	0.618
164	164	0.866
165	165	0.789
166	166	0.23
167	167	0.34
168	168	0.0386
169	169	0.207
17	17	0.761
18	18	0.215
19	19	0.143
2	2	0.435
20	20	0.313
21	21	0.817
22	22	0.135
23	23	0.0267
24	24	0.606
25	25	0.777
26	26	0.323
27	27	0.412
28	28	0.738
29	29	0.982
3	3	0.0542
30	30	0.946
31	31	0.584
32	32	0.0385
33	33	0.588
34	34	0.101
35	35	0.448
36	36	0.0334
37	37	0.0619
38	38	0.596
39	39	0.238
4	4	0.423
40	40	0.38
41	41	0.00464
42	42	0.197
43	43	0.0678
44	44	0.905
45	45	0.675
46	46	0.568
47	47	0.692
48	48	0.987
49	49	0.253
5	5	0.259
50	50	0.33
51	51	0.798
52	52	0.726
53	53	0.747
54	54	0.756
55	55	0.677
56	56	0.302
57	57	0.443
58	58	0.264
59	59	0.0772
6	6	0.893
60	60	0.0545
61	61	0.807
62	62	0.0839
63	63	0.281
64	64	0.7
65	65	0.0549
66	66	0.0247
67	67	0.187
68	68	0.442
69	69	0.685
7	7	0.383
70	70	0.319
71	71	0.107
72	72	0.35
73	73	0.23
74	74	0.269
75	75	0.504
76	76	0.353
77	77	0.0407
78	78	0.416
79	79	0.141
8	8	0.665
80	80	0.00336
81	81	0.151
82	82	0.343
83	83	0.544
84	84	0.74
85	85	0.517
86	86	0.342
87	87	0.102
88	88	0.213
89	89	0.037
9	9	0.00612
90	90	0.233
91	91	0.145
92	92	0.536
93	93	0.0607
94	94	0.737
95	95	0.695
96	96	0.0628
97	97	0.842
98	98	0.703
99	99	0.827

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11943

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0100093 MCF-7 cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
7 (disease of anatomical entity)
5093 (thoracic cancer)
305 (carcinoma)
299 (adenocarcinoma)
1612 (breast cancer)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000310 (breast)
0002100 (trunk)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)
0009569 (subdivision of trunk)
0001443 (chest)
0000915 (thoracic segment of trunk)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100093 (MCF-7 cell sample)
0100297 (carcinoma cell line sample)
0101912 (breast adenocarcinoma cell line sample)
0101120 (epithelial cell line sample)
0100816 (breast cell line sample)
0100167 (adenocarcinoma cell line sample)
0100356 (breast cancer cell line sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
NA

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00005638
+|accession_numbers=CAGE;DRX007837;DRR008709;DRZ000134;DRZ001519;DRZ011484;DRZ012869
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000310,UBERON:0002100,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0001062,UBERON:0009569,UBERON:0001443,UBERON:0000915
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000012,CL:0000063,CL:0000066,CL:0000004,CL:0000255
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000255
 |ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:14566,DOID:0050687,DOID:7,DOID:5093,DOID:305,DOID:299,DOID:1612
+|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100093,FF:0100297,FF:0101912,FF:0101120,FF:0100816,FF:0100167,FF:0100356
 |comment=
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr10:8096631..8096660,+!p1@GATA3!2.70!602.11!GATA3;;chr14:38064429..38064486,-!p1@FOXA1!2.38!239.07!FOXA1;;chr10:8096772..8096787,+!p2@GATA3!2.07!135.68!GATA3;;chr20:55204351..55204377,+!p1@TFAP2C!2.04!135.42!TFAP2C;;chr6:34524093..34524135,-!p1@SPDEF!1.83!67.19!SPDEF;;chr5:2751762..2751784,-!p1@IRX2!1.75!55.47!IRX2;;chr6:135502501..135502546,+!p1@MYB!1.74!64.07!MYB;;chr6:10415276..10415341,-!p2@TFAP2A!1.67!54.95!TFAP2A;;chr8:102504651..102504683,+!p1@GRHL2!1.66!44.79!GRHL2;;chr1:201979743..201979762,+!p1@ELF3!1.64!42.71!ELF3;;chr10:8095593..8095625,+!p3@GATA3!1.61!46.62!GATA3;;chr6:10412600..10412637,-!p1@TFAP2A!1.57!58.86!TFAP2A;;chr10:8097321..8097348,+!p4@GATA3!1.56!35.68!GATA3;;chr1:209979467..209979494,-!p1@IRF6!1.44!29.95!IRF6;;chr20:46130619..46130664,+!p1@NCOA3!1.43!671.64!NCOA3;;chr6:152011654..152011682,+!p1@ESR1!1.40!23.96!ESR1;;chr14:75988771..75988826,+!p1@BATF!1.35!28.65!BATF;;chr10:8100691..8100732,+!p5@GATA3!1.34!20.83!GATA3;;chr5:137804405..137804444,+!p3@EGR1!1.32!23.96!EGR1;;chr6:10412392..10412409,-!p4@TFAP2A!1.31!22.14!TFAP2A;;chr8:116681409..116681431,-!p2@TRPS1!1.30!51.30!TRPS1;;chr16:54320617..54320643,-!p3@IRX3!1.30!24.48!IRX3;;chr14:38064307..38064323,-!p3@FOXA1!1.30!19.01!FOXA1;;chr12:52445218..52445237,+!p1@NR4A1!1.28!222.67!NR4A1;;chr22:29196433..29196445,-!p4@XBP1!1.28!19.79!XBP1;;chr8:22550982..22550999,-!p1@EGR3!1.27!48.96!EGR3;;chr17:59477233..59477263,+!p1@TBX2!1.26!52.09!TBX2;;chr9:129376201..129376225,+!p1@LMX1B!1.26!17.19!LMX1B;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.25!16.67!ZBED1;;chr10:8097295..8097320,+!p6@GATA3!1.24!16.41!GATA3;;chr19:45971246..45971265,+!p1@FOSB!1.22!284.65!FOSB;;chr2:10091815..10091864,+!p1@GRHL1!1.22!20.57!GRHL1;;chr16:54319010..54319041,-!p8@IRX3!1.22!15.63!IRX3;;chr20:46130602..46130613,+!p3@NCOA3!1.21!43.49!NCOA3;;chr7:156803329..156803362,-!p1@MNX1!1.20!14.84!MNX1;;chr6:10415484..10415508,-!p3@TFAP2A!1.19!14.32!TFAP2A;;chr3:193853927..193853944,+!p1@HES1!1.18!454.19!HES1;;chr3:63897742..63897797,+!p2@ATXN7!1.18!47.40!ATXN7;;chr17:7197911..7197964,-!p1@YBX2!1.18!14.06!YBX2;;chr13:72441315..72441454,-!p1@DACH1!1.17!27.61!DACH1;;chr18:55102598..55102623,+!p1@ONECUT2!1.16!13.54!ONECUT2;;chr6:10413188..10413249,-!p7@TFAP2A!1.15!13.02!TFAP2A;;chr14:75745523..75745537,+!p1@FOS!1.14!1517.77!FOS;;chr22:29196492..29196503,-!p3@XBP1!1.14!20.05!XBP1;;chr16:54320646..54320672,-!p2@IRX3!1.14!19.53!IRX3;;chr18:55102628..55102646,+!p2@ONECUT2!1.13!12.50!ONECUT2;;chr20:46130672..46130686,+!p2@NCOA3!1.12!53.91!NCOA3;;chr12:80084737..80084763,-!p3@PAWR!1.12!46.10!PAWR;;chr8:99956662..99956684,+!p1@OSR2!1.12!18.75!OSR2;;chr20:50159198..50159299,-!p1@NFATC2!1.12!17.97!NFATC2;;chrX:66763856..66763896,+!p1@AR!1.12!17.71!AR;;chr16:54320158..54320200,-!p5@IRX3!1.09!16.15!IRX3;;chr9:129376233..129376251,+!p2@LMX1B!1.07!10.68!LMX1B;;chr6:152128810..152128827,+!p2@ESR1!1.07!10.68!ESR1;;chr11:65554528..65554546,+!p1@OVOL1!1.07!10.68!OVOL1;;chr11:65554563..65554576,+!p2@OVOL1!1.06!10.42!OVOL1;;chr8:102504690..102504704,+!p3@GRHL2!1.06!10.42!GRHL2;;chr7:149470641..149470694,-!p1@ZNF467!1.05!47.40!ZNF467;;chr17:59477403..59477414,+!p4@TBX2!1.05!10.16!TBX2;;chr3:169381420..169381535,-!p1@MECOM!1.03!11.46!MECOM;;chr1:201979703..201979721,+!p2@ELF3!1.03!9.64!ELF3;;chr17:80797886..80797906,-!p1@ZNF750!1.03!9.64!ZNF750;;chr5:137801160..137801176,+!p1@EGR1!1.02!963.58!EGR1;;chr11:101000445..101000465,-!p5@PGR!1.02!9.38!PGR;;chr5:174151553..174151610,+!p1@MSX2!1.00!15.10!MSX2;;chr16:54320101..54320125,-!p4@IRX3!1.00!13.02!IRX3;;chr19:33793430..33793447,-!p1@CEBPA!0.99!37.76!CEBPA;;chr8:116680215..116680245,-!p6@TRPS1!0.99!14.06!TRPS1;;chr20:46130727..46130734,+!p4@NCOA3!0.99!11.98!NCOA3;;chr12:53625966..53626012,-!p2@RARG!0.98!23.18!RARG;;chr16:54320675..54320715,-!p1@IRX3!0.98!19.01!IRX3;;chr5:137804357..137804390,+!p4@EGR1!0.97!9.90!EGR1;;chr10:8097357..8097368,+!p15@GATA3!0.97!8.33!GATA3;;chr1:209979411..209979433,-!p2@IRF6!0.97!8.33!IRF6;;chr20:55205825..55205847,+!p2@TFAP2C!0.96!8.07!TFAP2C;;chr3:147111198..147111225,+!p4@ZIC1!0.96!8.07!ZIC1;;chr5:2751785..2751808,-!p2@IRX2!0.95!7.81!IRX2;;chr6:34524049..34524089,-!p2@SPDEF!0.95!7.81!SPDEF;;chr17:35294075..35294102,+!p1@ENST00000559335!0.95!7.81!LHX1;;chr16:29818199..29818216,+!p11@MAZ!0.94!12.76!MAZ;;chr14:75746722..75746777,+!p2@FOS!0.94!9.90!FOS;;chr3:147111231..147111281,+!p3@ZIC1!0.93!7.55!ZIC1;;chr3:63898321..63898396,+!p3@ATXN7!0.92!17.19!ATXN7;;chr1:164528687..164528711,+!p6@PBX1!0.91!8.33!PBX1;;chr20:52210553..52210568,-!p7@ZNF217!0.90!7.03!ZNF217;;chr15:53082521..53082549,-!p1@ONECUT1!0.90!7.03!ONECUT1;;chr5:174151612..174151633,+!p2@MSX2!0.90!7.03!MSX2;;chr8:37553261..37553282,+!p2@ZNF703!0.89!54.17!ZNF703;;chr1:164528410..164528428,+!p1@PBX1!0.89!53.91!PBX1;;chr6:10412576..10412599,-!p5@TFAP2A!0.89!6.77!TFAP2A;;chr20:50179368..50179392,-!p2@NFATC2!0.88!8.59!NFATC2;;chr15:96869511..96869525,+!p16@NR2F2!0.88!7.29!NR2F2;;chr1:935398..935465,-!p2@HES4!0.87!13.80!HES4;;chr8:11668110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@@ Line 36: / Line 40: @@
 |fonse_treatment_closure=
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+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/breast%2520carcinoma%2520cell%2520line%253aMCF7.CNhs11943.10482-107A5.hg19.ctss.bed.gz
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 |id=FF:10482-107A5
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 |is_obsolete=
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 |name=breast carcinoma cell line:MCF7
 |namespace=FANTOM5
@@ Line 44: / Line 59: @@
 |profile_cagescan=,,,
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@@ Line 59: / Line 77: @@
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 |sample_cell_line=MCF7
@@ Line 80: / Line 99: @@
 |top_motifs=ZEB1:1.94530569429;SNAI1..3:1.79387446749;PPARG:1.75049916426;HOX{A6,A7,B6,B7}:1.62641092231;PITX1..3:1.58663748825;FOX{F1,F2,J1}:1.52547179405;MYOD1:1.38860345341;FOXQ1:1.36603501123;HOXA9_MEIS1:1.18224005831;bHLH_family:1.16360746363;VSX1,2:1.16086570841;CDX1,2,4:1.10120525819;ARID5B:1.08421565053;ZBTB16:1.03843233621;TFDP1:1.03153923861;BREu{core}:1.02785912572;IKZF2:1.02046189279;LMO2:1.00895336867;NKX6-1,2:0.884913128761;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.868125095064;DBP:0.863669140665;FOXD3:0.855256946596;NFY{A,B,C}:0.818447112663;PBX1:0.76564437537;STAT5{A,B}:0.742616538836;RBPJ:0.717580111779;POU2F1..3:0.704276253846;TFAP2B:0.70097325677;LHX3,4:0.68207950007;FOXN1:0.65620579224;ONECUT1,2:0.644802917227;ESRRA:0.641975972217;MED-1{core}:0.62554764785;ELK1,4_GABP{A,B1}:0.614116979685;XCPE1{core}:0.5849641732;EVI1:0.569386248029;NRF1:0.562385119575;GFI1:0.552174715489;EGR1..3:0.522419774137;PAX6:0.513523321324;MTF1:0.496702783142;FOXL1:0.477319017579;FOXP1:0.473177627347;ALX1:0.460017363683;TFAP2{A,C}:0.450214666135;ATF2:0.440013084364;SP1:0.377070356998;OCT4_SOX2{dimer}:0.360013784981;RFX2..5_RFXANK_RFXAP:0.359381535954;SREBF1,2:0.324042880734;E2F1..5:0.317646800285;HOX{A4,D4}:0.307093230241;ZFP161:0.260663111956;BPTF:0.23548090511;HIF1A:0.234446460486;TOPORS:0.22324545972;NR6A1:0.220507860669;FOX{D1,D2}:0.213561878562;HOX{A5,B5}:0.166653078917;HNF1A:0.16247189812;POU5F1:0.152341785116;POU3F1..4:0.141610067412;RFX1:0.13720888843;POU1F1:0.124604382893;LEF1_TCF7_TCF7L1,2:0.111306457636;FOX{I1,J2}:0.106773297945;PAX2:0.0985727717227;AIRE:0.0974413364899;ZNF143:0.0859922257361;ADNP_IRX_SIX_ZHX:0.0830077831088;POU6F1:0.0665631157914;IKZF1:0.0663767373737;FOXA2:0.0602400049004;TEAD1:0.0335780603122;HIC1:0.0237241855789;RORA:0.00202547195144;NR5A1,2:-0.0104032459783;PAX8:-0.0141606694597;CDC5L:-0.0151768870525;NANOG:-0.0173029047532;NR1H4:-0.0216187478428;UFEwm:-0.0311593253788;AHR_ARNT_ARNT2:-0.0498753385672;MYB:-0.0626413196368;TBX4,5:-0.0840797000396;FOXO1,3,4:-0.0855959786293;SOX5:-0.120349307195;REST:-0.137794535486;NFIX:-0.14777070608;FOS_FOS{B,L1}_JUN{B,D}:-0.156368948674;STAT1,3:-0.157369023784;ZIC1..3:-0.173245041716;NKX2-3_NKX2-5:-0.175116280174;ATF5_CREB3:-0.17835499965;ZNF148:-0.181518778846;ATF4:-0.183109814009;HLF:-0.199126642751;TLX2:-0.217624087351;MTE{core}:-0.219916454601;YY1:-0.222237500434;FOSL2:-0.222728623734;PRRX1,2:-0.225586828666;ATF6:-0.245903624324;FOXP3:-0.260934705812;ESR1:-0.267916915058;TEF:-0.282071427943;CEBPA,B_DDIT3:-0.295675947707;SOX{8,9,10}:-0.298475034375;CUX2:-0.309093844768;HNF4A_NR2F1,2:-0.312410666659;NFE2:-0.32002983898;PAX4:-0.340820010789;MEF2{A,B,C,D}:-0.352169098738;TP53:-0.354273943139;HMGA1,2:-0.372043501134;NFIL3:-0.374438606275;XBP1:-0.375314854051;TAL1_TCF{3,4,12}:-0.379522248931;NKX2-1,4:-0.380553148479;NHLH1,2:-0.383330155806;BACH2:-0.383704196061;GATA6:-0.392822282293;HSF1,2:-0.399631108206;GTF2I:-0.40010881681;NFE2L1:-0.413107626525;SOX2:-0.433631972961;PAX1,9:-0.440777289235;TFCP2:-0.477945880084;ZBTB6:-0.488082157796;TFAP4:-0.493717729267;MZF1:-0.503026422683;MYFfamily:-0.505829876212;GZF1:-0.529438776941;TLX1..3_NFIC{dimer}:-0.549973328914;FOXM1:-0.551140288834;PATZ1:-0.565762833112;GATA4:-0.571876315066;RUNX1..3:-0.585088665719;HBP1_HMGB_SSRP1_UBTF:-0.602286481012;NFKB1_REL_RELA:-0.609998963998;JUN:-0.621537122641;ELF1,2,4:-0.625232391249;MAZ:-0.637509084137;SRF:-0.667438976517;SPI1:-0.669589595779;STAT2,4,6:-0.671445565866;AR:-0.682077403944;PAX5:-0.684263330179;SPIB:-0.689439475365;RREB1:-0.692250040972;NFE2L2:-0.704463285964;KLF4:-0.735570074834;NKX2-2,8:-0.749172144666;NKX3-1:-0.757066875751;CRX:-0.791654611979;ZNF423:-0.793752444374;EN1,2:-0.795169378093;HES1:-0.79971355384;TBP:-0.809879572828;RXRA_VDR{dimer}:-0.821204271984;ZNF384:-0.844311519495;CREB1:-0.850665457596;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.85245714345;PAX3,7:-0.862610446306;GTF2A1,2:-0.86889967162;MAFB:-0.888567797089;ETS1,2:-0.900398901708;T:-0.987395176846;GFI1B:-0.989265025875;PRDM1:-0.99966407217;SOX17:-1.00444408795;HMX1:-1.00772773915;ALX4:-1.01544973495;NKX3-2:-1.02107413766;DMAP1_NCOR{1,2}_SMARC:-1.03260770241;TGIF1:-1.03343486607;IRF7:-1.03398169183;NFATC1..3:-1.07166018194;NANOG{mouse}:-1.12738985598;NR3C1:-1.15927023313;IRF1,2:-1.16289140673;PDX1:-1.17514176237;EP300:-1.22972176315;EBF1:-1.24305282044;HAND1,2:-1.27034902989;MYBL2:-1.32218043373;GCM1,2:-1.49987383465;ZNF238:-1.57784825811;GLI1..3:-1.67022481177;RXR{A,B,G}:-1.72701308413;SPZ1:-1.83433604395;SMAD1..7,9:-1.84617153595
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10482-107A5;search_select_hide=table117:FF:10482-107A5
 }}

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FF:10482-107A5: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 14:26, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0