FF:11880-125C8: Difference between revisions

Latest revision as of 18:26, 4 June 2020

Name:	CD14+ monocytes - treated with BCG, donor3
Species:	Human (Homo sapiens)
Library ID:	CNhs13543
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	NA
dev stage	NA
sex	female
age	21
cell type	monocyte
cell line	NA
company	NA
collaboration	Christine Wells (University of Queensland)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	D5-1
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005081

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs13543		CAGE		DRX008140		DRR009012

Accession ID Hg19

Library id		BAM		CTSS
CNhs13543		DRZ000437		DRZ001822

Accession ID Hg38

Library id		BAM		CTSS
CNhs13543		DRZ011787		DRZ013172

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0.721
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.158
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0.584
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.453
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.0493
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0.0922
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0.168
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0.696
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.0922
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0.701
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0.461
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0.233
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.458
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.436
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.151
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.882
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0.0922
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0.461
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.107
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0.365
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.0139
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0.297
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.889
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0.384
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.81
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.658
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.619
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0.955
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.593
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0.289
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.629
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0.351
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	1.029
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.461
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.778
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.821
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0.424
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.854
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.339
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0.293
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.556
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0.233
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.384
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0.339
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0.68
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	1.05
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0.121
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0.233
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0.424
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0.289
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13543

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	1.36583e-9
MA0003.1	MA0003.1	0.639
MA0004.1	MA0004.1	0.218
MA0006.1	MA0006.1	0.663
MA0007.1	MA0007.1	0.714
MA0009.1	MA0009.1	0.79
MA0014.1	MA0014.1	0.441
MA0017.1	MA0017.1	0.108
MA0018.2	MA0018.2	0.129
MA0019.1	MA0019.1	0.82
MA0024.1	MA0024.1	0.00806
MA0025.1	MA0025.1	0.0019
MA0027.1	MA0027.1	0.915
MA0028.1	MA0028.1	0.443
MA0029.1	MA0029.1	0.186
MA0030.1	MA0030.1	0.263
MA0031.1	MA0031.1	0.434
MA0035.2	MA0035.2	0.27
MA0038.1	MA0038.1	0.633
MA0039.2	MA0039.2	0.932
MA0040.1	MA0040.1	0.292
MA0041.1	MA0041.1	0.545
MA0042.1	MA0042.1	0.918
MA0043.1	MA0043.1	7.25884e-8
MA0046.1	MA0046.1	0.0228
MA0047.2	MA0047.2	0.634
MA0048.1	MA0048.1	0.652
MA0050.1	MA0050.1	1.48174e-16
MA0051.1	MA0051.1	1.24304e-10
MA0052.1	MA0052.1	0.0359
MA0055.1	MA0055.1	0.561
MA0057.1	MA0057.1	0.575
MA0058.1	MA0058.1	0.071
MA0059.1	MA0059.1	0.0876
MA0060.1	MA0060.1	7.81439e-8
MA0061.1	MA0061.1	5.99181e-12
MA0062.2	MA0062.2	0.12
MA0065.2	MA0065.2	0.0123
MA0066.1	MA0066.1	0.0347
MA0067.1	MA0067.1	3.49943e-6
MA0068.1	MA0068.1	0.872
MA0069.1	MA0069.1	0.58
MA0070.1	MA0070.1	0.00978
MA0071.1	MA0071.1	0.407
MA0072.1	MA0072.1	0.601
MA0073.1	MA0073.1	0.395
MA0074.1	MA0074.1	0.14
MA0076.1	MA0076.1	0.505
MA0077.1	MA0077.1	0.177
MA0078.1	MA0078.1	0.481
MA0079.2	MA0079.2	0.171
MA0080.2	MA0080.2	5.52976e-12
MA0081.1	MA0081.1	3.8826e-4
MA0083.1	MA0083.1	0.422
MA0084.1	MA0084.1	0.85
MA0087.1	MA0087.1	0.76
MA0088.1	MA0088.1	0.821
MA0090.1	MA0090.1	0.49
MA0091.1	MA0091.1	0.672
MA0092.1	MA0092.1	0.303
MA0093.1	MA0093.1	0.248
MA0099.2	MA0099.2	3.96835e-42
MA0100.1	MA0100.1	0.925
MA0101.1	MA0101.1	5.19139e-13
MA0102.2	MA0102.2	2.19192e-8
MA0103.1	MA0103.1	0.0688
MA0104.2	MA0104.2	0.19
MA0105.1	MA0105.1	1.14841e-15
MA0106.1	MA0106.1	0.959
MA0107.1	MA0107.1	3.76824e-16
MA0108.2	MA0108.2	0.383
MA0111.1	MA0111.1	0.584
MA0112.2	MA0112.2	9.32318e-5
MA0113.1	MA0113.1	0.666
MA0114.1	MA0114.1	0.174
MA0115.1	MA0115.1	0.668
MA0116.1	MA0116.1	4.28017e-4
MA0117.1	MA0117.1	0.052
MA0119.1	MA0119.1	0.162
MA0122.1	MA0122.1	0.612
MA0124.1	MA0124.1	0.486
MA0125.1	MA0125.1	0.261
MA0131.1	MA0131.1	0.494
MA0135.1	MA0135.1	0.507
MA0136.1	MA0136.1	5.2754e-14
MA0137.2	MA0137.2	2.59538e-12
MA0138.2	MA0138.2	0.317
MA0139.1	MA0139.1	0.983
MA0140.1	MA0140.1	0.329
MA0141.1	MA0141.1	0.156
MA0142.1	MA0142.1	0.724
MA0143.1	MA0143.1	0.902
MA0144.1	MA0144.1	1.61987e-5
MA0145.1	MA0145.1	0.406
MA0146.1	MA0146.1	0.41
MA0147.1	MA0147.1	0.292
MA0148.1	MA0148.1	0.982
MA0149.1	MA0149.1	0.217
MA0150.1	MA0150.1	8.75409e-22
MA0152.1	MA0152.1	0.766
MA0153.1	MA0153.1	0.00555
MA0154.1	MA0154.1	5.34962e-4
MA0155.1	MA0155.1	0.976
MA0156.1	MA0156.1	1.02661e-10
MA0157.1	MA0157.1	0.873
MA0159.1	MA0159.1	0.0232
MA0160.1	MA0160.1	0.0463
MA0162.1	MA0162.1	0.932
MA0163.1	MA0163.1	5.16864e-8
MA0164.1	MA0164.1	0.713
MA0258.1	MA0258.1	0.0112
MA0259.1	MA0259.1	0.977

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13543

Novel motif	Logo	P-value
1	1	0.0893
10	10	0.0242
100	100	0.987
101	101	0.839
102	102	0.928
103	103	0.248
104	104	0.526
105	105	0.165
106	106	0.00224
107	107	0.318
108	108	0.763
109	109	0.245
11	11	0.162
110	110	0.132
111	111	0.0825
112	112	0.351
113	113	0.599
114	114	0.0202
115	115	0.19
116	116	0.867
117	117	0.0775
118	118	0.209
119	119	0.169
12	12	0.309
120	120	0.33
121	121	0.541
122	122	0.554
123	123	0.684
124	124	0.85
125	125	0.322
126	126	0.25
127	127	0.482
128	128	0.0633
129	129	0.383
13	13	0.0797
130	130	0.348
131	131	0.997
132	132	0.0643
133	133	0.611
134	134	0.648
135	135	0.494
136	136	0.997
137	137	0.0208
138	138	0.277
139	139	0.091
14	14	0.533
140	140	0.564
141	141	0.219
142	142	0.098
143	143	0.032
144	144	0.619
145	145	0.354
146	146	0.9
147	147	0.697
148	148	0.0187
149	149	0.997
15	15	0.145
150	150	0.384
151	151	0.482
152	152	0.4
153	153	0.889
154	154	0.776
155	155	0.808
156	156	0.512
157	157	0.815
158	158	0.0853
159	159	0.114
16	16	0.299
160	160	0.396
161	161	0.464
162	162	0.217
163	163	0.136
164	164	0.15
165	165	0.224
166	166	0.745
167	167	0.236
168	168	0.126
169	169	0.00949
17	17	0.267
18	18	0.145
19	19	0.438
2	2	0.528
20	20	0.23
21	21	0.705
22	22	0.298
23	23	0.0448
24	24	0.314
25	25	0.361
26	26	0.0762
27	27	0.68
28	28	0.44
29	29	0.234
3	3	0.146
30	30	0.483
31	31	0.804
32	32	0.528
33	33	0.206
34	34	0.741
35	35	0.147
36	36	0.0668
37	37	0.0695
38	38	0.387
39	39	0.842
4	4	0.877
40	40	0.201
41	41	0.0174
42	42	0.347
43	43	0.0273
44	44	0.776
45	45	0.835
46	46	0.19
47	47	0.543
48	48	0.476
49	49	0.173
5	5	0.254
50	50	0.927
51	51	0.491
52	52	0.461
53	53	0.642
54	54	0.432
55	55	0.616
56	56	0.705
57	57	0.877
58	58	0.171
59	59	0.306
6	6	0.83
60	60	0.0547
61	61	0.732
62	62	0.0778
63	63	0.548
64	64	0.42
65	65	0.259
66	66	0.31
67	67	0.484
68	68	0.861
69	69	0.343
7	7	0.218
70	70	0.0461
71	71	0.0318
72	72	0.2
73	73	0.204
74	74	0.0719
75	75	0.127
76	76	0.176
77	77	0.557
78	78	0.152
79	79	0.986
8	8	0.405
80	80	0.149
81	81	0.375
82	82	0.249
83	83	0.0153
84	84	0.321
85	85	0.0479
86	86	0.0729
87	87	0.417
88	88	0.672
89	89	0.175
9	9	0.376
90	90	0.0971
91	91	0.315
92	92	0.303
93	93	0.354
94	94	0.0858
95	95	0.379
96	96	0.591
97	97	0.636
98	98	0.109
99	99	0.0602

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs13543

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0011103 human CD14-positive monocytes - treated with BCG sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0000219 (motile cell)
0000325 (stuff accumulating cell)
0000473 (defensive cell)
0000234 (phagocyte)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0000255 (eukaryotic cell)
0000576 (monocyte)
0000860 (classical monocyte)
0002057 (CD14-positive, CD16-negative classical monocyte)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000625 (experimental infection sample)
0000350 (experimentally modified sample)
0000628 (Bacillus Calmette-Guerin treatment sample)
0011103 (human CD14-positive monocytes - treated with BCG sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)
CL:0002057 (CD14-positive, CD16-negative classical monocyte)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0002371,UBERON:0001474,UBERON:0002384,UBERON:0000926,UBERON:0000479,UBERON:0000062,UBERON:0004765,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0002050,UBERON:0005423,UBERON:0000467,UBERON:0001062,UBERON:0005291,UBERON:0006598,UBERON:0002532,UBERON:0002204,UBERON:0001434,UBERON:0002390,UBERON:0002193,UBERON:0002405,UBERON:0003081,UBERON:0006603,UBERON:0003061
+|DRA_sample_Accession=CAGE@SAMD00005081
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000723,CL:0000048,CL:0000988,CL:0000839,CL:0000548,CL:0002194,CL:0000034,CL:0002032,CL:0000763,CL:0000012,CL:0002320,CL:0000063,CL:0002371,CL:0000766,CL:0000219,CL:0000004,CL:0000134,CL:0000738,CL:0002087,CL:0000255,CL:0002031,CL:0000576,CL:0000037,CL:0000860,CL:0000566,CL:0000049,CL:0000557,CL:0000837,CL:0002057,CL:0002009,CL:0000040,CL:0000559
+|accession_numbers=CAGE;DRX008140;DRR009012;DRZ000437;DRZ001822;DRZ011787;DRZ013172
+|ancestors_in_anatomy_facet=
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000325,CL:0000473,CL:0000234,CL:0000738,CL:0002087,CL:0000255,CL:0000576,CL:0000860,CL:0002057
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000625,FF:0000350,FF:0000628,FF:0011103
 |comment=
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr2:68592406..68592424,+!p1@PLEK!4.01!10134.68!PLEK;;chr16:85932760..85932775,+!p1@IRF8!3.08!1210.32!IRF8;;chr10:64576105..64576133,-!p1@EGR2!2.70!993.70!EGR2;;chr11:47400078..47400106,-!p1@SPI1!2.68!481.48!SPI1;;chr10:35484053..35484076,+!p1@CREM!2.64!1043.83!CREM;;chr7:115670804..115670825,-!p1@TFEC!2.60!400.13!TFEC;;chr12:54778471..54778528,-!p1@ZNF385A!2.29!194.39!ZNF385A;;chr11:64764435..64764449,-!p1@BATF2!2.24!234.83!BATF2;;chr6:106534192..106534224,+!p1@PRDM1!2.16!385.23!PRDM1;;chr2:68592394..68592405,+!p2@PLEK!2.12!131.25!PLEK;;chr11:47400062..47400077,-!p2@SPI1!2.07!115.17!SPI1;;chr6:36355431..36355466,-!p1@ETV7!2.04!107.84!ETV7;;chr11:47399947..47399961,-!p3@SPI1!2.02!104.05!SPI1;;chr20:39317868..39317884,-!p1@MAFB!2.01!1135.82!MAFB;;chr16:31885093..31885165,+!p1@ZNF267!2.00!1409.43!ZNF267;;chr1:158985493..158985535,+!p4@IFI16!1.99!145.20!IFI16;;chr5:131826457..131826514,-!p1@IRF1!1.97!3380.28!IRF1;;chr11:65430554..65430579,-!p3@RELA!1.97!228.91!RELA;;chr21:36260295..36260310,-!p3@RUNX1!1.96!140.94!RUNX1;;chr17:45810594..45810608,+!p1@TBX21!1.95!87.50!TBX21;;chr10:35484090..35484104,+!p6@CREM!1.94!86.55!CREM;;chr19:45971246..45971265,+!p1@FOSB!1.89!1338.49!FOSB;;chr21:30671690..30671762,+!p2@BACH1!1.89!247.83!BACH1;;chr2:70142232..70142251,+!p1@MXD1!1.85!370.80!MXD1;;chr10:31288398..31288455,-!p2@ZNF438!1.85!81.35!ZNF438;;chr2:231084639..231084654,-!p2@SP110!1.84!109.25!SP110;;chr6:106534230..106534254,+!p2@PRDM1!1.83!160.33!PRDM1;;chr14:35872453..35872485,-!p2@NFKBIA!1.82!154.19!NFKBIA;;chr11:65430535..65430549,-!p4@RELA!1.81!73.55!RELA;;chr14:75988831..75988847,+!p2@BATF!1.80!62.67!BATF;;chr1:212782094..212782109,+!p1@ATF3!1.79!1561.49!ATF3;;chr11:615942..615957,-!p1@IRF7!1.79!540.36!IRF7;;chr10:64018918..64018936,+!p2@ZNF365!1.77!58.41!ZNF365;;chr12:72056800..72056834,+!p1@THAP2!1.76!74.49!THAP2;;chr21:34442439..34442455,+!p1@OLIG1!1.75!55.34!OLIG1;;chr2:145277640..145277771,-!p1@ZEB2!1.74!682.96!ZEB2;;chr10:51572408..51572454,+!p3@NCOA4!1.74!297.97!NCOA4;;chr1:158979872..158979898,+!p3@IFI16!1.73!155.61!IFI16;;chrX:153305787..153305807,-!p3@MECP2!1.73!53.21!MECP2;;chr7:128577972..128578047,+!p1@IRF5!1.71!78.51!IRF5;;chr22:38597987..38598021,+!p2@MAFF!1.70!284.25!MAFF;;chr11:47400032..47400043,-!p5@SPI1!1.69!48.01!SPI1;;chr14:75988771..75988826,+!p1@BATF!1.68!61.49!BATF;;chr11:47399996..47400014,-!p4@SPI1!1.68!47.30!SPI1;;chr1:25256756..25256774,-!p1@RUNX3!1.67!84.66!RUNX3;;chr2:97202480..97202499,+!p1@ARID5A!1.66!432.53!ARID5A;;chr21:30671235..30671253,+!p1@BACH1!1.65!528.77!BACH1;;chr10:31288370..31288393,-!p3@ZNF438!1.65!43.75!ZNF438;;chr14:35873947..35873965,-!p1@NFKBIA!1.63!2502.69!NFKBIA;;chr8:22550982..22550999,-!p1@EGR3!1.63!114.46!EGR3;;chr10:35484804..35484902,+!p2@CREM!1.62!149.46!CREM;;chr6:126240380..126240430,+!p2@NCOA7!1.62!102.40!NCOA7;;chr21:36421535..36421610,-!p2@RUNX1!1.61!137.40!RUNX1;;chr2:231090471..231090504,+!p2@SP140!1.60!38.78!SP140;;chr3:12329397..12329433,+!p2@PPARG!1.58!82.06!PPARG;;chr12:72056749..72056767,+!p6@THAP2!1.58!40.67!THAP2;;chr12:72056773..72056796,+!p3@THAP2!1.56!45.17!THAP2;;chr19:50432132..50432217,+!p2@ATF5!1.56!41.62!ATF5;;chr3:12330560..12330579,+!p1@PPARG!1.56!40.67!PPARG;;chr7:50344289..50344323,+!p1@IKZF1!1.56!35.24!IKZF1;;chr10:51572339..51572376,+!p4@NCOA4!1.55!75.67!NCOA4;;chr2:145275162..145275202,-!p2@ZEB2!1.54!189.42!ZEB2;;chr19:36391434..36391450,-!p1@NFKBID!1.53!62.67!NFKBID;;chr2:157189180..157189290,-!p1@NR4A2!1.52!159.86!NR4A2;;chr12:54778351..54778378,-!p6@ZNF385A!1.52!32.40!ZNF385A;;chr19:33793430..33793447,-!p1@CEBPA!1.50!123.68!CEBPA;;chr13:41593425..41593480,-!p1@ELF1!1.47!173.34!ELF1;;chr6:391743..391759,+!p1@IRF4!1.47!28.85!IRF4;;chr6:126240442..126240459,+!p4@NCOA7!1.46!35.47!NCOA7;;chr11:47400045..47400060,-!p6@SPI1!1.46!27.90!SPI1;;chr4:103422499..103422632,+!p1@NFKB1!1.45!546.51!NFKB1;;chr4:106068026..106068084,+!p1@TET2!1.44!229.86!TET2;;chr11:615570..615721,-!p2@IRF7!1.44!51.08!IRF7;;chr6:144385698..144385742,-!p2@PLAGL1!1.44!31.93!PLAGL1;;chr3:39195037..39195069,-!p2@CSRNP1!1.42!151.35!CSRNP1;;chr6:126240463..126240489,+!p6@NCOA7!1.42!28.61!NCOA7;;chr10:104155480..104155534,+!p2@NFKB2!1.41!153.48!NFKB2;;chr12:11802753..11802834,+!p2@ETV6!1.41!118.71!ETV6;;chr11:47399920..47399931,-!p7@SPI1!1.41!24.83!SPI1;;chr19:45251395..45251432,+!p8@BCL3!1.41!24.59!BCL3;;chr9:110252035..110252057,-!p1@KLF4!1.39!359.93!KLF4;;chrX:129244454..129244488,-!p1@ELF4!1.39!165.30!ELF4;;chr18:3449720..3449749,+!p2@TGIF1!1.39!49.19!TGIF1;;chr12:48298765..48298783,-!p2@VDR!1.39!48.01!VDR;;chr2:61108695..61108753,+!p1@REL!1.38!152.29!REL;;chr3:187463179..187463201,-!p2@BCL6!1.38!92.46!BCL6;;chr4:83822199..83822239,+!p2@THAP9!1.38!27.20!THAP9;;chr17:38497662..38497713,+!p4@RARA!1.38!26.72!RARA;;chr6:106535598..106535637,+!p7@PRDM1!1.37!22.70!PRDM1;;chr2:191885737..191885750,-!p4@STAT1!1.37!22.23!STAT1;;chr4:185395590..185395627,-!p3@IRF2!1.36!26.96!IRF2;;chr1:37940170..37940190,+!p1@ZC3H12A!1.35!252.80!ZC3H12A;;chr20:48599506..48599526,+!p1@SNAI1!1.35!132.43!SNAI1;;chr14:35872494..35872511,-!p5@NFKBIA!1.34!27.67!NFKBIA;;chr14:35872962..35873025,-!p3@NFKBIA!1.33!50.61!NFKBIA;;chr22:38598057..38598071,+!p3@MAFF!1.33!46.59!MAFF;;chr1:221052733..221052749,+!p2@HLX!1.33!26.25!HLX;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.33!20.57!ZBED1;;chr21:30672433..30672464,+!p6@BACH1!1.33!20.34!BACH1;;chr9:129567282..129567353,+!p1@ZBTB43!1.32!250.91!ZBTB43;;chr2:70314240..70314256,+!p4@PCBP1!1.32!40.20!PCBP1;;chr4:185395633..185395651,-!p2@IRF2!1.32!31.69!IRF2;;chr2:145271342..145271377,-!p5@ZEB2!1.32!19.86!ZEB2;;chr20:48807351..48807384,+!p1@CEBPB!1.31!1892.80!CEBPB;;chr5:142782823..142782854,-!p3@NR3C1!1.31!27.43!NR3C1;;chr22:38598086..38598105,+!p1@MAFF!1.30!195.33!MAFF;;chr21:36260343..36260402,-!p6@RUNX1!1.30!30.27!RUNX1;;chr21:34398234..34398250,+!p1@OLIG2!1.30!19.16!OLIG2;;chr3:101568349..101568365,+!p1@NFKBIZ!1.29!923.94!NFKBIZ;;chr10:104154246..104154347,+!p3@NFKB2!1.29!110.20!NFKB2;;chr6:15246200..15246214,+!p2@JARID2!1.29!50.84!JARID2;;chr10:35416142..35416169,+!p3@CREM!1.29!48.24!CREM;;chr8:116681123..116681143,-!p4@TRPS1!1.29!35.47!TRPS1;;chr14:75745523..75745537,+!p1@FOS!1.28!2108.24!FOS;;chr2:231090433..231090469,+!p1@SP140!1.27!17.50!SP140;;chr12:52445218..52445237,+!p1@NR4A1!1.26!211.65!NR4A1;;chr1:158979792..158979814,+!p2@IFI16!1.26!159.39!IFI16;;chr2:231280954..231280965,+!p2@SP100!1.26!31.69!SP100;;chr9:102584159..102584174,+!p2@NR4A3!1.26!30.51!NR4A3;;chr3:39195139..39195150,-!p3@CSRNP1!1.26!21.76!CSRNP1;;chr13:41635029..41635044,-!p4@ELF1!1.25!35.71!ELF1;;chr2:192015701..192015743,-!p1@STAT4!1.25!22.70!STAT4;;chr1:221052776..221052799,+!p1@HLX!1.24!29.09!HLX;;chr7:150946376..150946389,-!p6@SMARCD3!1.24!16.32!SMARCD3;;chr2:231084659..231084721,-!p1@SP110!1.23!360.40!SP110;;chr3:170075436..170075520,+!p1@SKIL!1.23!336.04!SKIL;;chr3:101546827..101546847,+!p2@NFKBIZ!1.23!22.47!NFKBIZ;;chrX:129244430..129244442,-!p5@ELF4!1.23!16.08!ELF4;;chr3:187454281..187454300,-!p8@BCL6!1.23!15.84!BCL6;;chr7:17338266..17338282,+!p1@AHR!1.22!165.77!AHR;;chr6:44233252..44233296,-!p1@NFKBIE!1.22!152.06!NFKBIE;;chr16:3285119..3285133,-!p2@ZNF200!1.22!30.98!ZNF200;;chr16:89787973..89788001,+!p3@ZNF276!1.22!29.56!ZNF276;;chr1:158979851..158979865,+!p5@IFI16!1.21!33.82!IFI16;;chr8:116681150..116681164,-!p5@TRPS1!1.21!29.56!TRPS1;;chr2:145277882..145277967,-!p3@ZEB2!1.21!26.49!ZEB2;;chr18:3449618..3449634,+!p13@TGIF1!1.21!18.68!TGIF1;;chr3:107318229..107318239,+!p17@BBX!1.21!15.13!BBX;;chr16:79634624..79634642,-!p1@MAF!1.20!57.94!MAF;;chr9:102584128..102584144,+!p3@NR4A3!1.20!27.90!NR4A3;;chr6:12012249..12012266,+!p5@HIVEP1!1.20!25.78!HIVEP1;;chr10:104155659..104155676,+!p4@NFKB2!1.20!18.68!NFKB2;;chr21:36260325..36260341,-!p14@RUNX1!1.20!14.90!RUNX1;;chr19:45252008..45252024,+!p2@BCL3!1.19!48.01!BCL3;;chr19:45250948..45250998,+!p3@BCL3!1.19!36.42!BCL3;;chr1:161736038..161736056,+!p4@ATF6!1.19!33.82!ATF6;;chr2:231084820..231084836,-!p5@SP110!1.18!16.32!SP110;;chr8:53373491..53373506,-!p4@ST18!1.18!14.19!ST18;;chr7:28725740..28725778,+!p1@CREB5!1.17!122.97!CREB5;;chr3:126191157..126191171,-!p4@ZXDC!1.17!13.95!ZXDC;;chr6:12012170..12012245,+!p1@HIVEP1!1.16!66.45!HIVEP1;;chr18:3448455..3448480,+!p5@TGIF1!1.16!24.83!TGIF1;;chr19:19496539..19496576,+!p8@GATAD2A!1.16!23.65!GATAD2A;;chr18:3449586..3449617,+!p8@TGIF1!1.16!21.28!TGIF1;;chr1:38325227..38325246,-!p2@MTF1!1.16!18.21!MTF1;;chr1:25256439..25256476,-!p3@RUNX3!1.16!13.48!RUNX3;;chr12:56415246..56415286,+!p2@IKZF4!1.16!13.48!IKZF4;;chr8:116681194..116681214,-!p1@TRPS1!1.15!121.08!TRPS1;;chr10:3827371..3827386,-!p2@KLF6!1.15!109.25!KLF6;;chr8:72756063..72756125,-!p1@MSC!1.15!26.25!MSC;;chr9:110250697..110250738,-!p2@KLF4!1.15!15.37!KLF4;;chr10:31288329..31288353,-!p7@ZNF438!1.15!13.24!ZNF438;;chr14:24630465..24630531,+!p1@IRF9!1.13!474.62!IRF9;;chr2:28618532..28618610,+!p4@FOSL2!1.13!21.52!FOSL2;;chr8:81397846..81397860,+!p3@ZBTB10!1.13!15.84!ZBTB10;;chr7:115670792..115670797,-!p2@TFEC!1.13!12.53!TFEC;;chr4:103423079..103423112,+!p4@NFKB1!1.13!12.53!NFKB1;;chrX:153305741..153305753,-!p4@MECP2!1.13!12.53!MECP2;;chr16:79634595..79634620,-!p2@MAF!1.12!22.47!MAF;;chr20:48807615..48807644,+!p6@CEBPB!1.12!20.10!CEBPB;;chr2:145275228..145275241,-!p11@ZEB2!1.12!14.66!ZEB2;;chr1:158979922..158979933,+!p13@IFI16!1.11!11.82!IFI16;;chr12:48298785..48298828,-!p1@VDR!1.10!62.19!VDR;;chr18:3449695..3449712,+!p9@TGIF1!1.10!17.97!TGIF1;;chr1:158985723..158985746,+!p20@IFI16!1.10!11.59!IFI16;;chr19:12902289..12902307,+!p1@JUNB!1.09!2573.64!JUNB;;chr21:36260980..36261011,-!p1@RUNX1!1.09!327.53!RUNX1;;chr3:39195075..39195088,-!p1@CSRNP1!1.09!71.42!CSRNP1;;chr21:40177892..40177903,+!p2@ETS2!1.09!45.88!ETS2;;chr14:35872926..35872951,-!p4@NFKBIA!1.09!16.08!NFKBIA;;chr11:65430038..65430053,-!p12@RELA!1.09!11.35!RELA;;chr12:57914700..57914737,+!p7@MBD6!1.09!11.35!MBD6;;chr2:238600998..238601013,+!p5@LRRFIP1!1.09!11.35!LRRFIP1;;chr4:106066712..106066728,+!p8@TET2!1.09!11.35!TET2;;chr1:221054922..221054933,+!p16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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000234;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000576;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000763;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000766;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000860;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002193;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002390;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002405
+|ffid_belonging_in_development=CL:0000049,CL:0000134,CL:0002057
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 36: / Line 42: @@
 |fonse_treatment_closure=FF:0000625,FF:0000628,FF:0011103,FF:11880-125C8
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520BCG%252c%2520donor3.CNhs13543.11880-125C8.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520BCG%252c%2520donor3.CNhs13543.11880-125C8.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520BCG%252c%2520donor3.CNhs13543.11880-125C8.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520BCG%252c%2520donor3.CNhs13543.11880-125C8.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520BCG%252c%2520donor3.CNhs13543.11880-125C8.hg38.nobarcode.ctss.bed.gz
 |id=FF:11880-125C8
 |is_a=EFO:0002091;;FF:0011103
 |is_obsolete=
+|library_id=CNhs13543
+|library_id_phase_based=2:CNhs13543
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11880
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11880
 |name=CD14+ monocytes - treated with BCG, donor3
 |namespace=
@@ Line 44: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs13543,LSID1029,release012,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_box=125
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@@ Line 59: / Line 79: @@
 |rna_weight_ug=1.319355
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+|sample_category=primary cells
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 |sample_cell_line=
@@ Line 80: / Line 101: @@
 |top_motifs=STAT5{A,B}:7.26373686279;STAT2,4,6:6.51422901718;FOSL2:5.70940310683;IRF7:5.49594908509;NFE2:5.4215323612;HLF:5.30363872559;NFE2L2:5.22224551507;FOS_FOS{B,L1}_JUN{B,D}:5.17275608512;CEBPA,B_DDIT3:5.14645494241;IRF1,2:4.88054584261;BACH2:4.86452619451;STAT1,3:4.76034948152;NFIL3:4.70536769893;PAX2:3.94504814512;NANOG{mouse}:3.9189338413;SPIB:3.8701073742;FOXP3:3.65895656622;HSF1,2:3.53500824816;NFKB1_REL_RELA:3.49543753505;SPI1:3.33287162064;SREBF1,2:3.28623889666;ETS1,2:3.26100287537;NFATC1..3:2.95054499329;ATF5_CREB3:2.86646459656;ATF6:2.75929506467;PAX8:2.68630393329;RUNX1..3:2.64528534748;ATF4:2.5995905807;NR1H4:2.49045994754;DMAP1_NCOR{1,2}_SMARC:2.48158394414;ATF2:2.38559876621;EP300:2.36238598272;JUN:2.30320334105;NFE2L1:2.2001500042;CDX1,2,4:2.12352224822;CREB1:2.09298253912;FOXN1:2.09285340172;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.97777770403;TGIF1:1.96059761265;ALX4:1.86082149491;ELF1,2,4:1.8492830891;MAFB:1.82230991968;HIF1A:1.27047837167;HOX{A5,B5}:1.0697840091;XBP1:1.06387672871;PAX3,7:0.988690524363;RXRA_VDR{dimer}:0.978911953555;RBPJ:0.96306210028;HMGA1,2:0.925045688762;SRF:0.827705111849;PPARG:0.799861101015;PDX1:0.741020121787;ZBTB16:0.630660147956;FOXO1,3,4:0.607180836616;AHR_ARNT_ARNT2:0.415732894315;TLX2:0.395958534649;EN1,2:0.320886601784;IKZF1:0.295532408786;VSX1,2:0.27014257041;NR6A1:0.245410721007;MEF2{A,B,C,D}:0.215366314476;HMX1:0.202741943959;TBP:0.184598884758;PRDM1:0.0690697004437;NANOG:0.0240022717422;GLI1..3:-0.00259387167336;HOXA9_MEIS1:-0.0921760272026;NR3C1:-0.112522168102;BPTF:-0.158536533591;HBP1_HMGB_SSRP1_UBTF:-0.19307207282;FOX{D1,D2}:-0.244818540579;SPZ1:-0.254549664049;ESRRA:-0.279866411438;OCT4_SOX2{dimer}:-0.283106523086;ALX1:-0.374440239383;GATA4:-0.390074010342;IKZF2:-0.401804668274;RFX2..5_RFXANK_RFXAP:-0.43842035297;MYB:-0.466144887138;RORA:-0.469061079797;POU2F1..3:-0.489799113258;FOX{F1,F2,J1}:-0.530924334385;SMAD1..7,9:-0.572347992455;TAL1_TCF{3,4,12}:-0.58345113336;PAX1,9:-0.601964614462;TFCP2:-0.617256474368;PAX6:-0.647507243209;FOXM1:-0.664232323565;SOX2:-0.710666397496;POU5F1:-0.763729552687;EGR1..3:-0.856663073272;HES1:-0.857168382564;ESR1:-0.878788747174;DBP:-0.895038031227;PAX4:-0.929092813489;RFX1:-1.01045776323;PRRX1,2:-1.05536387967;NKX2-1,4:-1.19270307381;REST:-1.19326024556;NHLH1,2:-1.2161638671;ZNF238:-1.22926572835;MZF1:-1.23320059459;HNF4A_NR2F1,2:-1.36008106182;RXR{A,B,G}:-1.36916065987;HNF1A:-1.39508088942;TFAP4:-1.4352193623;TEF:-1.44287385839;FOXL1:-1.45937823999;NKX3-1:-1.4610215736;PITX1..3:-1.52511558233;MYFfamily:-1.53353986942;NFIX:-1.54198046101;HOX{A6,A7,B6,B7}:-1.5688061911;GATA6:-1.58753281225;CRX:-1.61053063012;E2F1..5:-1.63333357554;FOXD3:-1.64974744086;FOXA2:-1.65882366199;NKX2-3_NKX2-5:-1.66687635663;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.71631393468;NKX3-2:-1.72189948411;MED-1{core}:-1.7298222708;MTE{core}:-1.80240470856;POU3F1..4:-1.82787988495;TEAD1:-1.83466468878;SOX5:-1.85985019112;ELK1,4_GABP{A,B1}:-1.87950446322;BREu{core}:-1.88121590305;CUX2:-1.88768442131;ADNP_IRX_SIX_ZHX:-1.90846764048;CDC5L:-1.91851213727;ZFP161:-1.92462377467;NKX2-2,8:-1.92936974329;ZBTB6:-1.94324399804;MYBL2:-1.95119089887;T:-1.96855089256;SP1:-1.97129787861;PATZ1:-1.97468046765;GZF1:-1.99347021768;ZEB1:-1.99621013837;GTF2A1,2:-2.00862664538;NKX6-1,2:-2.02390061471;GFI1B:-2.07682911594;MTF1:-2.09964982259;TLX1..3_NFIC{dimer}:-2.10120718521;GTF2I:-2.10395174287;TP53:-2.11385745404;FOX{I1,J2}:-2.11575862831;TFAP2B:-2.13824582714;FOXP1:-2.14004649915;POU6F1:-2.14185089061;TFDP1:-2.17182438479;HOX{A4,D4}:-2.21300950771;MAZ:-2.22169770164;SNAI1..3:-2.24502755547;POU1F1:-2.26298888597;MYOD1:-2.28304817387;SOX{8,9,10}:-2.28873423994;PBX1:-2.34285916596;XCPE1{core}:-2.34376405822;ZNF148:-2.35577459856;ZNF384:-2.38592878015;NFY{A,B,C}:-2.38609287832;KLF4:-2.54231616251;ZIC1..3:-2.55497504484;GCM1,2:-2.56348801515;bHLH_family:-2.61855914844;NR5A1,2:-2.6515921884;EBF1:-2.66205659356;HIC1:-2.69126703232;ONECUT1,2:-2.73783089073;FOXQ1:-2.7465238049;GFI1:-2.74918020362;AIRE:-2.7628359221;TFAP2{A,C}:-2.76537678064;TBX4,5:-2.81321480751;YY1:-2.84444234685;SOX17:-2.88540484236;UFEwm:-2.90368870597;RREB1:-2.94366777571;ARID5B:-2.95611859136;NRF1:-2.97348836598;PAX5:-3.05427212414;LMO2:-3.23721275806;EVI1:-3.39432936098;AR:-3.47476036207;HAND1,2:-3.5161587192;ZNF143:-3.68146913265;LHX3,4:-3.86681483584;ZNF423:-3.89980057588;LEF1_TCF7_TCF7L1,2:-4.09551995992;TOPORS:-4.22336293132
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11880-125C8;search_select_hide=table117:FF:11880-125C8
 }}

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FF:11880-125C8: Difference between revisions

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Latest revision as of 18:26, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0