FF:11911-125G3: Difference between revisions

Latest revision as of 18:28, 4 June 2020

Name:	CD14-CD16+ Monocytes, donor3
Species:	Human (Homo sapiens)
Library ID:	CNhs13548
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	blood
dev stage	NA
sex	male
age	23
cell type	monocyte
cell line	NA
company	NA
collaboration	Michael Rehli (University of Regensberg)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	43-44
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005535

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs13548		CAGE		DRX008169		DRR009041

Accession ID Hg19

Library id		BAM		CTSS
CNhs13548		DRZ000466		DRZ001851

Accession ID Hg38

Library id		BAM		CTSS
CNhs13548		DRZ011816		DRZ013201

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.102
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0.0729
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.296
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.135
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0.135
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0.0729
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0.391
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.163
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0.14
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.442
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.238
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.249
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.551
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0.135
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0.0912
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.112
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0.135
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.111
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.387
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.864
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.613
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.358
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0.557
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.473
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0.0729
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.68
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0.0729
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0.0797
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.419
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.634
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.421
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0.504
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	1.122
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.0288
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0.302
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	1.063
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0.238
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.513
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0.135
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0.19
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	1.006
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13548

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	4.23902e-7
MA0003.1	MA0003.1	0.0567
MA0004.1	MA0004.1	0.497
MA0006.1	MA0006.1	0.998
MA0007.1	MA0007.1	0.98
MA0009.1	MA0009.1	0.356
MA0014.1	MA0014.1	0.426
MA0017.1	MA0017.1	0.00446
MA0018.2	MA0018.2	0.0493
MA0019.1	MA0019.1	0.658
MA0024.1	MA0024.1	0.0154
MA0025.1	MA0025.1	0.0381
MA0027.1	MA0027.1	0.727
MA0028.1	MA0028.1	0.174
MA0029.1	MA0029.1	0.296
MA0030.1	MA0030.1	0.243
MA0031.1	MA0031.1	0.375
MA0035.2	MA0035.2	0.878
MA0038.1	MA0038.1	0.209
MA0039.2	MA0039.2	0.396
MA0040.1	MA0040.1	0.365
MA0041.1	MA0041.1	0.418
MA0042.1	MA0042.1	0.307
MA0043.1	MA0043.1	0.00523
MA0046.1	MA0046.1	0.0521
MA0047.2	MA0047.2	0.07
MA0048.1	MA0048.1	0.841
MA0050.1	MA0050.1	1.11814e-14
MA0051.1	MA0051.1	1.75684e-6
MA0052.1	MA0052.1	0.631
MA0055.1	MA0055.1	0.932
MA0057.1	MA0057.1	0.868
MA0058.1	MA0058.1	0.333
MA0059.1	MA0059.1	0.562
MA0060.1	MA0060.1	3.45415e-4
MA0061.1	MA0061.1	0.00371
MA0062.2	MA0062.2	3.47867e-6
MA0065.2	MA0065.2	0.0132
MA0066.1	MA0066.1	0.225
MA0067.1	MA0067.1	0.00276
MA0068.1	MA0068.1	0.397
MA0069.1	MA0069.1	0.884
MA0070.1	MA0070.1	0.00509
MA0071.1	MA0071.1	0.0848
MA0072.1	MA0072.1	0.59
MA0073.1	MA0073.1	0.54
MA0074.1	MA0074.1	0.516
MA0076.1	MA0076.1	0.104
MA0077.1	MA0077.1	0.113
MA0078.1	MA0078.1	0.88
MA0079.2	MA0079.2	0.566
MA0080.2	MA0080.2	3.82099e-16
MA0081.1	MA0081.1	4.35811e-5
MA0083.1	MA0083.1	0.452
MA0084.1	MA0084.1	0.578
MA0087.1	MA0087.1	0.363
MA0088.1	MA0088.1	0.504
MA0090.1	MA0090.1	0.0123
MA0091.1	MA0091.1	0.437
MA0092.1	MA0092.1	0.485
MA0093.1	MA0093.1	0.566
MA0099.2	MA0099.2	0.149
MA0100.1	MA0100.1	0.973
MA0101.1	MA0101.1	0.026
MA0102.2	MA0102.2	2.13299e-4
MA0103.1	MA0103.1	0.36
MA0104.2	MA0104.2	0.414
MA0105.1	MA0105.1	1.03579e-5
MA0106.1	MA0106.1	0.61
MA0107.1	MA0107.1	0.0119
MA0108.2	MA0108.2	9.93058e-9
MA0111.1	MA0111.1	0.289
MA0112.2	MA0112.2	6.71577e-4
MA0113.1	MA0113.1	0.909
MA0114.1	MA0114.1	0.0514
MA0115.1	MA0115.1	0.303
MA0116.1	MA0116.1	2.17121e-5
MA0117.1	MA0117.1	0.43
MA0119.1	MA0119.1	0.292
MA0122.1	MA0122.1	0.71
MA0124.1	MA0124.1	0.229
MA0125.1	MA0125.1	0.358
MA0131.1	MA0131.1	0.529
MA0135.1	MA0135.1	0.904
MA0136.1	MA0136.1	8.3775e-20
MA0137.2	MA0137.2	0.55
MA0138.2	MA0138.2	0.56
MA0139.1	MA0139.1	0.825
MA0140.1	MA0140.1	0.872
MA0141.1	MA0141.1	0.0196
MA0142.1	MA0142.1	0.499
MA0143.1	MA0143.1	0.82
MA0144.1	MA0144.1	0.798
MA0145.1	MA0145.1	0.232
MA0146.1	MA0146.1	0.0382
MA0147.1	MA0147.1	0.45
MA0148.1	MA0148.1	0.525
MA0149.1	MA0149.1	0.0603
MA0150.1	MA0150.1	0.0427
MA0152.1	MA0152.1	0.0628
MA0153.1	MA0153.1	0.0127
MA0154.1	MA0154.1	0.00203
MA0155.1	MA0155.1	0.959
MA0156.1	MA0156.1	3.66697e-12
MA0157.1	MA0157.1	0.173
MA0159.1	MA0159.1	0.0637
MA0160.1	MA0160.1	0.00984
MA0162.1	MA0162.1	0.698
MA0163.1	MA0163.1	2.11583e-12
MA0164.1	MA0164.1	0.93
MA0258.1	MA0258.1	0.0103
MA0259.1	MA0259.1	0.81

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13548

Novel motif	Logo	P-value
1	1	0.0869
10	10	0.0254
100	100	0.787
101	101	0.323
102	102	0.452
103	103	0.312
104	104	0.567
105	105	0.351
106	106	0.0194
107	107	0.815
108	108	0.861
109	109	0.0306
11	11	0.157
110	110	0.231
111	111	0.0324
112	112	0.233
113	113	0.387
114	114	0.00666
115	115	0.336
116	116	0.946
117	117	0.0192
118	118	0.123
119	119	0.275
12	12	0.296
120	120	0.859
121	121	0.963
122	122	0.56
123	123	2.30124e-4
124	124	0.349
125	125	0.0575
126	126	0.158
127	127	0.351
128	128	0.0977
129	129	0.982
13	13	0.125
130	130	0.275
131	131	0.878
132	132	0.0416
133	133	0.164
134	134	0.716
135	135	0.12
136	136	0.744
137	137	1.07535e-4
138	138	0.281
139	139	0.0129
14	14	0.393
140	140	0.212
141	141	0.513
142	142	0.934
143	143	0.158
144	144	0.979
145	145	0.287
146	146	0.994
147	147	0.428
148	148	0.0576
149	149	0.73
15	15	0.135
150	150	0.525
151	151	0.259
152	152	0.343
153	153	0.609
154	154	0.783
155	155	0.0743
156	156	0.861
157	157	0.738
158	158	0.151
159	159	0.223
16	16	0.482
160	160	0.5
161	161	0.575
162	162	0.647
163	163	0.265
164	164	0.113
165	165	0.126
166	166	0.477
167	167	0.048
168	168	0.554
169	169	0.0142
17	17	0.367
18	18	0.215
19	19	0.289
2	2	0.955
20	20	0.454
21	21	0.419
22	22	0.301
23	23	0.327
24	24	0.301
25	25	0.1
26	26	0.0656
27	27	0.55
28	28	0.478
29	29	0.08
3	3	0.0837
30	30	0.347
31	31	0.604
32	32	0.618
33	33	0.176
34	34	0.593
35	35	0.159
36	36	0.027
37	37	0.0547
38	38	0.471
39	39	0.737
4	4	0.918
40	40	0.146
41	41	0.0697
42	42	0.275
43	43	0.0869
44	44	0.617
45	45	0.943
46	46	0.139
47	47	0.331
48	48	0.353
49	49	0.0867
5	5	0.108
50	50	0.952
51	51	0.406
52	52	0.335
53	53	0.262
54	54	0.432
55	55	0.305
56	56	0.792
57	57	0.761
58	58	0.0289
59	59	0.148
6	6	0.782
60	60	0.0453
61	61	0.233
62	62	0.00807
63	63	0.513
64	64	0.343
65	65	0.37
66	66	0.367
67	67	0.249
68	68	0.825
69	69	0.608
7	7	0.136
70	70	0.0207
71	71	0.0456
72	72	0.244
73	73	0.137
74	74	0.385
75	75	0.032
76	76	0.214
77	77	0.628
78	78	0.27
79	79	0.267
8	8	0.282
80	80	0.315
81	81	0.182
82	82	0.146
83	83	0.746
84	84	0.696
85	85	0.0549
86	86	0.087
87	87	0.201
88	88	0.515
89	89	0.751
9	9	0.338
90	90	0.0542
91	91	0.46
92	92	0.482
93	93	0.444
94	94	0.0209
95	95	0.0637
96	96	0.281
97	97	0.982
98	98	0.104
99	99	0.0737

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs13548

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0011100 human CD14-CD16-positive Monocytes sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0000219 (motile cell)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0000255 (eukaryotic cell)
0000576 (monocyte)
0000875 (non-classical monocyte)
0002396 (CD14-low, CD16-positive monocyte)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0011100 (human CD14-CD16-positive Monocytes sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)
CL:0002057 (CD14-positive, CD16-negative classical monocyte)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0002371,UBERON:0001474,UBERON:0002384,UBERON:0000926,UBERON:0000479,UBERON:0000062,UBERON:0004765,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0002050,UBERON:0005423,UBERON:0000467,UBERON:0001062,UBERON:0005291,UBERON:0006598,UBERON:0002532,UBERON:0002204,UBERON:0001434,UBERON:0002390,UBERON:0002193,UBERON:0002405,UBERON:0003081,UBERON:0006603,UBERON:0003061
+|DRA_sample_Accession=CAGE@SAMD00005535
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000723,CL:0000048,CL:0000988,CL:0000839,CL:0000548,CL:0002194,CL:0000034,CL:0002032,CL:0000763,CL:0000012,CL:0002320,CL:0000063,CL:0002371,CL:0000766,CL:0000219,CL:0000004,CL:0000134,CL:0000738,CL:0002087,CL:0000255,CL:0002031,CL:0000576,CL:0000037,CL:0000860,CL:0000875,CL:0002393,CL:0000566,CL:0002397,CL:0000049,CL:0000557,CL:0000837,CL:0002396,CL:0002057,CL:0002009,CL:0000040,CL:0000559
+|accession_numbers=CAGE;DRX008169;DRR009041;DRZ000466;DRZ001851;DRZ011816;DRZ013201
+|ancestors_in_anatomy_facet=
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000738,CL:0002087,CL:0000255,CL:0000576,CL:0000875,CL:0002396
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0011100
 |comment=
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr2:68592406..68592424,+!p1@PLEK!2.75!560.23!PLEK;;chr11:47400078..47400106,-!p1@SPI1!2.61!404.60!SPI1;;chr7:50344289..50344323,+!p1@IKZF1!2.18!148.69!IKZF1;;chr16:85932760..85932775,+!p1@IRF8!2.12!130.06!IRF8;;chr11:47400062..47400077,-!p2@SPI1!2.03!105.21!SPI1;;chr11:47399947..47399961,-!p3@SPI1!1.91!81.10!SPI1;;chr12:54778351..54778378,-!p6@ZNF385A!1.72!51.15!ZNF385A;;chr2:145277640..145277771,-!p1@ZEB2!1.66!562.42!ZEB2;;chr19:13213662..13213686,-!p1@LYL1!1.66!65.21!LYL1;;chr11:47400032..47400043,-!p5@SPI1!1.65!43.47!SPI1;;chr20:39317868..39317884,-!p1@MAFB!1.63!463.78!MAFB;;chr12:54778471..54778528,-!p1@ZNF385A!1.62!40.73!ZNF385A;;chr11:47399996..47400014,-!p4@SPI1!1.59!38.18!SPI1;;chr1:212873084..212873137,-!p2@BATF3!1.52!31.97!BATF3;;chr19:33793430..33793447,-!p1@CEBPA!1.50!124.03!CEBPA;;chr11:47399920..47399931,-!p7@SPI1!1.50!30.69!SPI1;;chr5:176735063..176735088,-!p2@MXD3!1.49!29.59!MXD3;;chrX:106960180..106960197,-!p2@TSC22D3!1.48!107.22!TSC22D3;;chr11:47400045..47400060,-!p6@SPI1!1.48!28.86!SPI1;;chr7:128577972..128578047,+!p1@IRF5!1.44!41.46!IRF5;;chr14:75745523..75745537,+!p1@FOS!1.40!2762.06!FOS;;chr5:88178983..88179012,-!p1@MEF2C!1.39!175.54!MEF2C;;chr19:16435625..16435682,+!p1@KLF2!1.38!713.12!KLF2;;chr10:114710098..114710130,+!p2@TCF7L2!1.36!158.19!TCF7L2;;chr1:25256756..25256774,-!p1@RUNX3!1.35!39.64!RUNX3;;chr7:50343634..50343717,+!p2@IKZF1!1.35!21.37!IKZF1;;chr9:110252035..110252057,-!p1@KLF4!1.33!314.00!KLF4;;chr1:212873061..212873080,-!p4@BATF3!1.31!19.55!BATF3;;chr2:231090433..231090469,+!p1@SP140!1.28!18.08!SP140;;chr10:51572408..51572454,+!p3@NCOA4!1.27!100.83!NCOA4;;chr10:94449703..94449718,+!p1@HHEX!1.27!67.04!HHEX;;chr19:42636586..42636607,-!p1@POU2F2!1.23!44.20!POU2F2;;chrX:106960221..106960236,-!p3@TSC22D3!1.23!43.66!TSC22D3;;chr20:48807456..48807475,+!p3@CEBPB!1.23!30.50!CEBPB;;chr1:25256439..25256476,-!p3@RUNX3!1.23!16.07!RUNX3;;chr3:101568349..101568365,+!p1@NFKBIZ!1.22!790.39!NFKBIZ;;chr10:114709999..114710031,+!p1@TCF7L2!1.22!365.15!TCF7L2;;chr9:110250697..110250738,-!p2@KLF4!1.21!18.08!KLF4;;chr21:34442439..34442455,+!p1@OLIG1!1.21!15.16!OLIG1;;chr2:145271342..145271377,-!p5@ZEB2!1.19!14.61!ZEB2;;chrX:106960249..106960260,-!p5@TSC22D3!1.18!22.47!TSC22D3;;chrY:21906594..21906622,-!p1@KDM5D!1.17!13.88!KDM5D;;chr21:30672433..30672464,+!p6@BACH1!1.17!13.70!BACH1;;chr11:128563948..128564003,+!p1@FLI1!1.16!162.02!FLI1;;chr2:28618532..28618610,+!p4@FOSL2!1.16!23.20!FOSL2;;chr2:68592394..68592405,+!p2@PLEK!1.16!13.33!PLEK;;chr19:45971246..45971265,+!p1@FOSB!1.14!238.56!FOSB;;chr21:30671690..30671762,+!p2@BACH1!1.14!43.47!BACH1;;chr10:3827371..3827386,-!p2@KLF6!1.12!103.21!KLF6;;chr2:208394817..208394834,+!p3@CREB1!1.10!46.40!CREB1;;chr8:71316428..71316459,-!p2@NCOA2!1.10!19.55!NCOA2;;chr10:35416142..35416169,+!p3@CREM!1.09!30.14!CREM;;chr13:41593425..41593480,-!p1@ELF1!1.06!67.59!ELF1;;chr2:238600933..238600985,+!p3@LRRFIP1!1.06!57.90!LRRFIP1;;chrX:106960285..106960299,-!p1@TSC22D3!1.04!268.15!TSC22D3;;chr7:77428066..77428132,+!p2@PHTF2!1.04!65.03!PHTF2;;chr12:54694758..54694805,-!p1@NFE2!1.04!12.24!NFE2;;chr5:131826457..131826514,-!p1@IRF1!1.03!388.16!IRF1;;chr2:231090471..231090504,+!p2@SP140!1.03!9.68!SP140;;chr19:12902289..12902307,+!p1@JUNB!1.01!2173.52!JUNB;;chr18:51751066..51751077,-!p6@MBD2!1.01!14.07!MBD2;;chr4:185395633..185395651,-!p2@IRF2!1.00!14.61!IRF2;;chr12:72056800..72056834,+!p1@THAP2!0.98!11.51!THAP2;;chr2:61108695..61108753,+!p1@REL!0.97!59.00!REL;;chr10:94449675..94449694,+!p2@HHEX!0.97!22.83!HHEX;;chr9:110251836..110251887,-!p4@KLF4!0.97!11.14!KLF4;;chr2:208031943..208031978,-!p5@KLF7!0.96!10.96!KLF7;;chr20:56195474..56195506,-!p1@ZBP1!0.96!8.04!ZBP1;;chr14:45722360..45722415,-!p1@MIS18BP1!0.95!128.05!MIS18BP1;;chr9:137217986..137218049,+!p3@RXRA!0.95!23.56!RXRA;;chr20:48807430..48807439,+!p8@CEBPB!0.95!12.24!CEBPB;;chr17:38497662..38497713,+!p4@RARA!0.95!9.32!RARA;;chr2:238600998..238601013,+!p5@LRRFIP1!0.95!7.85!LRRFIP1;;chr19:45579725..45579743,-!p1@ZNF296!0.94!35.62!ZNF296;;chr4:185395590..185395627,-!p3@IRF2!0.94!9.68!IRF2;;chr7:50344251..50344288,+!p3@IKZF1!0.93!7.49!IKZF1;;chr21:34442540..34442560,+!p2@OLIG1!0.93!7.49!OLIG1;;chr2:231084659..231084721,-!p1@SP110!0.92!176.64!SP110;;chr21:30671235..30671253,+!p1@BACH1!0.92!96.81!BACH1;;chr5:88179017..88179046,-!p2@MEF2C!0.92!30.50!MEF2C;;chr19:13213954..13214021,-!p4@LYL1!0.92!7.31!LYL1;;chr1:158978768..158978800,+!p8@IFI16!0.92!7.31!IFI16;;chr20:48807351..48807384,+!p1@CEBPB!0.91!756.23!CEBPB;;chr4:38665810..38665827,+!p1@KLF3!0.91!108.14!KLF3;;chr2:157189180..157189290,-!p1@NR4A2!0.90!37.45!NR4A2;;chr10:114710060..114710069,+!p5@TCF7L2!0.90!12.06!TCF7L2;;chr5:142782823..142782854,-!p3@NR3C1!0.90!10.23!NR3C1;;chr4:185395191..185395226,-!p4@IRF2!0.90!9.86!IRF2;;chr12:72056773..72056796,+!p3@THAP2!0.90!9.13!THAP2;;chr13:41593392..41593403,-!p7@ELF1!0.90!6.94!ELF1;;chr7:115670804..115670825,-!p1@TFEC!0.90!6.94!TFEC;;chr2:70142232..70142251,+!p1@MXD1!0.89!40.00!MXD1;;chr17:38498402..38498445,+!p3@RARA!0.89!25.39!RARA;;chr18:77155922..77155939,+!p1@NFATC1!0.89!19.36!NFATC1;;chr12:52445218..52445237,+!p1@NR4A1!0.88!87.50!NR4A1;;chr4:38665769..38665801,+!p2@KLF3!0.88!63.02!KLF3;;chr4:106068026..106068084,+!p1@TET2!0.88!62.29!TET2;;chr6:144385698..144385742,-!p2@PLAGL1!0.88!8.04!PLAGL1;;chr10:114886551..114886601,+!p11@TCF7L2!0.88!6.58!TCF7L2;;chr2:157198916..157198978,-!p2@NR4A2!0.87!23.56!NR4A2;;chr8:37553292..37553317,+!p1@ZNF703!0.86!158.37!ZNF703;;chrX:129244840..129244881,-!p2@ELF4!0.85!24.48!ELF4;;chr1:158979872..158979898,+!p3@IFI16!0.85!19.55!IFI16;;chr17:38498594..38498661,+!p2@RARA!0.84!21.19!RARA;;chr14:64971288..64971316,-!p2@ZBTB25!0.84!19.36!ZBTB25;;chr9:110252074..110252079,-!p3@KLF4!0.84!10.05!KLF4;;chr10:114710083..114710092,+!p8@TCF7L2!0.84!8.04!TCF7L2;;chr2:61108808..61108821,+!p3@REL!0.84!7.67!REL;;chr10:135044190..135044229,+!p3@UTF1!0.84!5.85!UTF1;;chr2:208031542..208031595,-!p2@KLF7!0.83!43.47!KLF7;;chr16:31885093..31885165,+!p1@ZNF267!0.82!92.79!ZNF267;;chr2:185463247..185463263,+!p1@ZNF804A!0.82!10.23!ZNF804A;;chr19:16435735..16435773,+!p4@KLF2!0.82!5.66!KLF2;;chrX:70712265..70712303,+!p4@TAF1!0.82!5.66!TAF1;;chr9:117150254..117150271,-!p1@AKNA!0.81!15.71!AKNA;;chr1:935398..935465,-!p2@HES4!0.81!11.87!HES4;;chr22:21771656..21771662,+!p1@HIC2!0.81!5.48!HIC2;;chr2:8822176..8822196,+!p1@ID2!0.80!820.89!ID2;;chr18:51750948..51751059,-!p1@MBD2!0.80!184.49!MBD2;;chr20:56195525..56195556,-!p2@ZBP1!0.80!5.30!ZBP1;;chr11:615942..615957,-!p1@IRF7!0.79!53.16!IRF7;;chr10:104154246..104154347,+!p3@NFKB2!0.79!34.71!NFKB2;;chr20:48807648..48807671,+!p9@CEBPB!0.79!7.67!CEBPB;;chr19:45972701..45972774,+!p2@FOSB!0.79!7.31!FOSB;;chr10:31288398..31288455,-!p2@ZNF438!0.78!6.03!ZNF438;;chrX:101186981..101187030,-!p1@ZMAT1!0.77!17.35!ZMAT1;;chr19:42627037..42627084,-!p3@POU2F2!0.77!4.93!POU2F2;;chr6:170862932..170862947,+!p5@TBP!0.77!4.93!TBP;;chr6:44355499..44355514,+!p3@CDC5L!0.76!5.30!CDC5L;;chr8:48650697..48650708,-!p2@CEBPD!0.75!38.54!CEBPD;;chr2:61108650..61108687,+!p2@REL!0.75!25.02!REL;;chr10:43932296..43932360,+!p1@ZNF487P!0.75!10.41!ZNF487P;;chr10:114710218..114710229,+!p4@TCF7L2!0.75!9.86!TCF7L2;;chr14:75746722..75746777,+!p2@FOS!0.75!6.03!FOS;;chr15:90544182..90544195,+!p7@ZNF710!0.75!4.57!ZNF710;;chr11:2292226..2292270,-!p1@ASCL2!0.75!4.57!ASCL2;;chr6:130339710..130339745,+!p1@L3MBTL3!0.74!39.82!L3MBTL3;;chr9:88969339..88969422,-!p2@ZCCHC6!0.74!38.72!ZCCHC6;;chr2:145277882..145277967,-!p3@ZEB2!0.74!8.22!ZEB2;;chr1:44679370..44679422,+!p3@DMAP1!0.74!6.21!DMAP1;;chr6:44233252..44233296,-!p1@NFKBIE!0.73!48.04!NFKBIE;;chr8:71316021..71316068,-!p1@NCOA2!0.73!45.48!NCOA2;;chr17:40440481..40440550,+!p1@STAT5A!0.73!35.07!STAT5A;;chrX:129244454..129244488,-!p1@ELF4!0.73!34.89!ELF4;;chr1:935467..935484,-!p1@HES4!0.73!21.55!HES4;;chr21:30671189..30671207,+!p4@BACH1!0.73!16.99!BACH1;;chr19:4067174..4067200,-!p9@ZBTB7A!0.73!5.48!ZBTB7A;;chr13:41593405..41593416,-!p9@ELF1!0.73!4.38!ELF1;;chrY:2803415..2803468,+!p1@ZFY!0.73!4.38!ZFY;;chr2:10183651..10183713,+!p1@KLF11!0.72!34.52!KLF11;;chr12:72056749..72056767,+!p6@THAP2!0.72!4.75!THAP2;;chr6:108880956..108881011,+!p1@FOXO3!0.71!30.87!FOXO3;;chr10:51572339..51572376,+!p4@NCOA4!0.71!10.23!NCOA4;;chr9:88969303..88969335,-!p1@ZCCHC6!0.70!42.74!ZCCHC6;;chr5:172483347..172483407,+!p1@C5orf41!0.70!33.98!CREBRF;;chr6:28092375..28092412,+!p1@ZSCAN16!0.70!18.63!ZSCAN16;;chr6:41040923..41040952,+!p2@NFYA!0.70!11.69!NFYA;;chr20:48807875..48807982,+!p2@CEBPB!0.69!98.46!CEBPB;;chr19:49140609..49140643,-!p1@DBP!0.69!25.02!DBP;;chr1:40367530..40367597,-!p1@MYCL1!0.69!7.67!MYCL1;;chr2:48541789..48541874,+!p1@FOXN2!0.68!99.00!FOXN2;;chr5:176738887..176738934,-!p1@MXD3!0.68!29.04!MXD3;;chr9:117160738..117160782,-!p2@AKNA!0.68!17.72!AKNA;;chr2:60780607..60780624,-!p2@BCL11A!0.68!12.97!BCL11A;;chr2:145274981..145274994,-!p9@ZEB2!0.68!5.85!ZEB2;;chr14:75988771..75988826,+!p1@BATF!0.68!5.30!BATF;;chr19:13213704..13213726,-!p3@LYL1!0.67!5.11!LYL1;;chr19:10416315..10416333,-!p1@ZGLP1!0.67!3.65!ZGLP1;;chr19:13213691..13213696,-!p9@LYL1!0.67!3.65!LYL1;;chr6:391743..391759,+!p1@IRF4!0.67!3.65!IRF4;;chr14:24630465..24630531,+!p1@IRF9!0.66!160.01!IRF9;;chr3:39195075..39195088,-!p1@CSRNP1!0.66!25.94!CSRNP1;;chr2:60780753..60780800,-!p1@BCL11A!0.66!19.91!BCL11A;;chr4:106067811..106067854,+!p2@TET2!0.66!19.00!TET2;;chr16:3313791..3313834,+!p2@ZNF263!0.66!8.77!ZNF263;;chr3:101546827..101546847,+!p2@NFKBIZ!0.66!5.30!NFKBIZ;;chr2:176033066..176033087,-!p2@ATF2!0.66!4.75!ATF2;;chr3:187463248..187463264,-!p1@BCL6!0.65!87.86!BCL6;;chr9:3525727..3525828,-!p2@RFX3!0.65!9.86!RFX3;;chr1:158979851..158979865,+!p5@IFI16!0.65!8.40!IFI16;;chr18:51750414..51750449,-!p5@MBD2!0.65!7.31!MBD2;;chr20:48807615..48807644,+!p6@CEBPB!0.65!6.21!CEBPB;;chr1:161014760..161014788,-!p4@USF1!0.65!3.47!USF1;;chr2:145275982..145276003,-!p7@ZEB2!0.65!3.47!ZEB2;;chr2:145277632..145277638,-!p17@ZEB2!0.65!3.47!ZEB2;;chr12:54694807..54694832,-!p3@NFE2!0.65!3.47!NFE2;;chr10:3827389..3827408,-!p1@KLF6!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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000234;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000576;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000763;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000766;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002396;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002193;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002390;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002405
+|ffid_belonging_in_development=CL:0000049,CL:0000134,CL:0002057
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 36: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14-CD16%252b%2520Monocytes%252c%2520donor3.CNhs13548.11911-125G3.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14-CD16%252b%2520Monocytes%252c%2520donor3.CNhs13548.11911-125G3.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14-CD16%252b%2520Monocytes%252c%2520donor3.CNhs13548.11911-125G3.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14-CD16%252b%2520Monocytes%252c%2520donor3.CNhs13548.11911-125G3.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14-CD16%252b%2520Monocytes%252c%2520donor3.CNhs13548.11911-125G3.hg38.nobarcode.ctss.bed.gz
 |id=FF:11911-125G3
 |is_a=EFO:0002091;;FF:0011100
 |is_obsolete=
+|library_id=CNhs13548
+|library_id_phase_based=2:CNhs13548
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11911
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11911
 |name=CD14-CD16+ Monocytes, donor3
 |namespace=
@@ Line 46: / Line 63: @@
 |profile_rnaseq=
 |profile_srnaseq=
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@@ Line 59: / Line 79: @@
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+|sample_category=primary cells
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 |sample_cell_line=
@@ Line 80: / Line 101: @@
 |top_motifs=HMX1:2.17358459849;SPI1:2.16959058435;NANOG{mouse}:2.08612122065;IRF1,2:2.03124168708;SPIB:1.98598218255;IRF7:1.72297356184;DMAP1_NCOR{1,2}_SMARC:1.62047714669;NFIL3:1.58472095762;RFX2..5_RFXANK_RFXAP:1.537588976;ETS1,2:1.5356601693;FOXN1:1.52455313459;TLX2:1.43432368088;FOX{I1,J2}:1.42428410685;ATF5_CREB3:1.40814981476;HES1:1.37645918115;ELF1,2,4:1.34068240508;ALX1:1.27487489034;TGIF1:1.27233419514;FOX{F1,F2,J1}:1.26235639884;CREB1:1.17136593201;SREBF1,2:1.1410315722;RUNX1..3:1.08669702394;FOXO1,3,4:1.02387223826;PAX2:0.994161791481;FOXA2:0.981337230708;GLI1..3:0.874317416334;MAFB:0.854782333563;ATF4:0.781962075617;TAL1_TCF{3,4,12}:0.742842854628;ESRRA:0.686313295703;NFKB1_REL_RELA:0.66411675413;FOX{D1,D2}:0.625162673142;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.623192401262;PAX8:0.597509899134;NR6A1:0.592943807411;CRX:0.526723642902;CDX1,2,4:0.514748898301;NR5A1,2:0.499547755828;EP300:0.4771646195;ELK1,4_GABP{A,B1}:0.476547105608;ATF2:0.457012373906;FOXP3:0.452998333662;BPTF:0.411619621085;HMGA1,2:0.401300571289;POU5F1:0.363980560366;PAX4:0.305808075175;FOXP1:0.305389360452;HIF1A:0.29497643267;RFX1:0.288241035403;HLF:0.287247237851;ALX4:0.276822861847;TOPORS:0.274131306204;CEBPA,B_DDIT3:0.262348998314;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.26061242531;NKX2-2,8:0.249472402739;JUN:0.23950486;NR1H4:0.208070896543;TFCP2:0.171708641091;FOXQ1:0.149514602226;ZBTB16:0.125093358267;ESR1:0.121291468053;HBP1_HMGB_SSRP1_UBTF:0.111665083255;PAX3,7:0.100165582616;FOSL2:0.0911431008124;ZNF148:0.0625633386228;EN1,2:0.0588187855357;HNF4A_NR2F1,2:0.0573132637169;NFIX:0.0533271611094;HOXA9_MEIS1:0.033903932754;MEF2{A,B,C,D}:0.030259295349;IKZF2:-0.00306040459385;TFAP4:-0.00927814591902;GATA6:-0.0142362413404;ATF6:-0.014480724345;NANOG:-0.0289221116117;OCT4_SOX2{dimer}:-0.0338920802384;EBF1:-0.0470009088671;PITX1..3:-0.0476884597469;RBPJ:-0.0589485531141;PDX1:-0.0622072526527;T:-0.0809019700316;RXRA_VDR{dimer}:-0.0946483427626;PBX1:-0.10205971528;PPARG:-0.105092891138;BACH2:-0.11439608932;POU2F1..3:-0.131106811687;FOS_FOS{B,L1}_JUN{B,D}:-0.144840882562;RORA:-0.150165792222;PRRX1,2:-0.208460143261;NFE2L2:-0.220781782862;STAT2,4,6:-0.223455990472;NFE2:-0.240505438153;AHR_ARNT_ARNT2:-0.250606190845;VSX1,2:-0.270127262888;GATA4:-0.275630341022;CUX2:-0.335457034629;MYB:-0.358019764021;SPZ1:-0.363667438146;HOX{A5,B5}:-0.36544468556;NHLH1,2:-0.378535104883;AIRE:-0.380198307662;FOXD3:-0.382220372973;SOX2:-0.393920141134;DBP:-0.396608869926;MYFfamily:-0.406436628826;ARID5B:-0.417663713776;AR:-0.421878145474;NFE2L1:-0.425969903251;POU1F1:-0.430343640689;HSF1,2:-0.441611511876;REST:-0.456897425689;GZF1:-0.471724652434;PAX1,9:-0.492373975031;SRF:-0.492729106674;MYOD1:-0.523705663941;HNF1A:-0.548555966804;HOX{A4,D4}:-0.562778364434;NKX2-3_NKX2-5:-0.576181419476;HOX{A6,A7,B6,B7}:-0.579489452908;SOX{8,9,10}:-0.584313062179;ADNP_IRX_SIX_ZHX:-0.616939498526;YY1:-0.644294015842;SOX5:-0.644308652012;BREu{core}:-0.652573014764;NFY{A,B,C}:-0.668594773581;PRDM1:-0.683531076466;STAT1,3:-0.716003182496;ZEB1:-0.721672104447;MTF1:-0.725290092274;FOXL1:-0.726020708265;ONECUT1,2:-0.772201501461;E2F1..5:-0.796118625588;NKX6-1,2:-0.80527941236;TFAP2{A,C}:-0.81209885558;LEF1_TCF7_TCF7L1,2:-0.851116329375;HAND1,2:-0.859040488445;NKX3-2:-0.892184588933;ZFP161:-0.930545180501;STAT5{A,B}:-0.935348971353;XBP1:-0.948919569282;RXR{A,B,G}:-0.970214739339;KLF4:-0.975784304132;SNAI1..3:-0.979496053413;NRF1:-0.992135148099;IKZF1:-1.04488759719;ZNF238:-1.06381755311;PAX5:-1.06886554073;LHX3,4:-1.07858992884;TP53:-1.07917670349;NKX3-1:-1.09925812321;TFAP2B:-1.10780472248;SMAD1..7,9:-1.11969387493;SP1:-1.13108256961;EGR1..3:-1.14338863887;MTE{core}:-1.14714192689;GFI1:-1.18034094628;TEF:-1.18562508092;PATZ1:-1.2033066402;GCM1,2:-1.22906200528;MZF1:-1.23632820274;MED-1{core}:-1.23702782726;PAX6:-1.24063091803;TBP:-1.24715847527;LMO2:-1.24763685657;ZNF423:-1.24983269535;GFI1B:-1.2595882729;ZIC1..3:-1.26254427512;MYBL2:-1.29675410988;TLX1..3_NFIC{dimer}:-1.30800566571;RREB1:-1.321984206;ZNF143:-1.32711101584;POU6F1:-1.33988153085;ZBTB6:-1.36484827666;TFDP1:-1.36629089407;HIC1:-1.39838671061;GTF2I:-1.39861830029;CDC5L:-1.39980562472;UFEwm:-1.45007689495;NKX2-1,4:-1.46273545419;NFATC1..3:-1.48968947668;EVI1:-1.49292331429;TEAD1:-1.52985165404;XCPE1{core}:-1.57140626629;MAZ:-1.57170027642;ZNF384:-1.61881984146;FOXM1:-1.64144279352;bHLH_family:-1.66409599212;NR3C1:-1.66706466589;GTF2A1,2:-1.83003327817;SOX17:-1.93983251086;TBX4,5:-1.95201806425;POU3F1..4:-2.28631157079
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11911-125G3;search_select_hide=table117:FF:11911-125G3
 }}

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FF:11911-125G3: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 18:28, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0