FF:11517-119H5: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468 | |DRA_sample_Accession=CAGE@SAMD00005877 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005877 | ||
|accession_numbers=CAGE;DRX008427;DRR009299;DRZ000724;DRZ002109;DRZ012074;DRZ013459 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037176;DRR041542;DRZ007184 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002113,UBERON:0002100,UBERON:0000483,UBERON:0000479,UBERON:0000064,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0006555,UBERON:0006554,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0003103,UBERON:0009569,UBERON:0004211,UBERON:0009773,UBERON:0000489,UBERON:0005177,UBERON:0005172,UBERON:0001231,UBERON:0004819,UBERON:0005173,UBERON:0004810,UBERON:0001285,UBERON:0011143,UBERON:0001008,UBERON:0002417,UBERON:0007684,UBERON:0000916 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000255,CL:1000497,CL:0002518,CL:1000449,CL:1000507,CL:1000494 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000151 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr2:114036488..114036504,-!p1@PAX8!2.30!197.66!PAX8;;chr17:36105042..36105060,-!p1@HNF1B!2.28!188.24!HNF1B;;chr1:201979703..201979721,+!p2@ELF3!2.08!120.01!ELF3;;chr17:46703687..46703740,-!p1@HOXB9!2.06!113.73!HOXB9;;chr1:201979743..201979762,+!p1@ELF3!1.98!94.12!ELF3;;chr17:46682321..46682362,-!p1@HOXB6!1.75!54.90!HOXB6;;chr6:134210243..134210257,+!p1@TCF21!1.67!45.49!TCF21;;chr16:86600426..86600441,+!p1@FOXC2!1.65!105.10!FOXC2;;chr7:27153454..27153469,-!p2@HOXA3!1.60!38.43!HOXA3;;chr6:34204921..34204939,+!p3@HMGA1!1.56!995.34!HMGA1;;chr7:27205136..27205164,-!p1@HOXA9!1.52!32.16!HOXA9;;chr17:35294075..35294102,+!p1@ENST00000559335!1.47!28.24!LHX1;;chr11:61520075..61520136,+!p1@C11orf9!1.46!57.26!C11orf9;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.45!27.45!HOXC5;;chr17:46622205..46622218,-!p3@HOXB2!1.42!29.02!HOXB2;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.42!25.10!POU3F3;;chr19:45260775..45260838,+!p5@BCL3!1.39!30.59!BCL3;;chr21:38071430..38071456,+!p1@SIM2!1.39!23.53!SIM2;;chr20:42295745..42295765,+!p1@MYBL2!1.37!349.82!MYBL2;;chr10:102505493..102505546,+!p2@PAX2!1.36!21.96!PAX2;;chr6:34204672..34204692,+!p1@HMGA1!1.35!2298.14!HMGA1;;chr20:42295713..42295738,+!p2@MYBL2!1.35!123.14!MYBL2;;chr7:27196217..27196246,-!p2@HOXA7!1.31!19.61!HOXA7;;chr7:27205106..27205134,-!p2@HOXA9!1.31!19.61!HOXA9;;chr17:46703826..46703845,-!p3@HOXB9!1.30!18.82!HOXB9;;chr5:2751762..2751784,-!p1@IRX2!1.26!17.26!IRX2;;chr5:72744594..72744609,-!p1@FOXD1!1.22!70.59!FOXD1;;chr7:27224795..27224840,-!p2@HOXA11!1.20!14.90!HOXA11;;chr7:27224842..27224872,-!p1@HOXA11!1.20!14.90!HOXA11;;chr17:41623692..41623715,-!p1@ETV4!1.18!59.61!ETV4;;chr12:66218255..66218304,+!p3@HMGA2!1.18!37.65!HMGA2;;chr1:209979467..209979494,-!p1@IRF6!1.18!15.69!IRF6;;chr11:32457075..32457095,-!p1@WT1!1.18!14.12!WT1;;chr17:46690839..46690884,-!p1@HOXB8!1.18!14.12!HOXB8;;chr19:17356436..17356481,-!p3@NR2F6!1.17!23.53!NR2F6;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!1.17!14.90!GLIS1;;chr17:46622229..46622257,-!p6@HOXB2!1.16!15.69!HOXB2;;chr7:27192185..27192209,-!p1@HOXA3!1.16!13.33!HOXA3;;chr12:54378923..54378966,+!p1@HOXC10!1.16!13.33!HOXC10;;chr12:54393880..54393962,+!p1@HOXC9!1.16!13.33!HOXC9;;chr20:31350184..31350200,+!p1@DNMT3B!1.13!25.88!DNMT3B;;chr20:50721803..50721857,-!p2@ZFP64!1.11!18.82!ZFP64;;chr5:3595934..3595957,+!p2@IRX1!1.11!11.77!IRX1;;chr17:46675558..46675577,-!p2@HOXB6!1.11!11.77!HOXB6;;chr2:5832508..5832524,+!p1@SOX11!1.11!11.77!SOX11;;chr2:176987441..176987454,+!p1@HOXD9!1.08!10.98!HOXD9;;chr2:176994408..176994492,+!p1@HOXD8!1.08!10.98!HOXD8;;chr7:27170359..27170381,-!p1@HOXA4!1.08!10.98!HOXA4;;chr7:27213893..27213954,-!p1@HOXA10!1.08!10.98!HOXA10;;chr17:46667594..46667619,-!p1@HOXB3!1.08!10.98!HOXB3;;chr12:3069037..3069119,+!p2@TEAD4!1.06!36.86!TEAD4;;chr17:41622765..41622821,-!p2@ETV4!1.05!15.69!ETV4;;chr16:54964740..54964789,+!p1@IRX5!1.05!14.90!IRX5;;chr17:36105074..36105086,-!p2@HNF1B!1.05!10.20!HNF1B;;chr10:102505327..102505344,+!p1@PAX2!1.05!10.20!PAX2;;chr3:52001448..52001478,-!p2@PCBP4!1.04!139.61!PCBP4;;chr11:65667846..65667868,-!p1@FOSL1!1.03!260.40!FOSL1;;chr17:38465413..38465438,+!p5@RARA!1.03!15.69!RARA;;chr11:65667884..65667895,-!p2@FOSL1!1.02!37.65!FOSL1;;chr6:10415276..10415341,-!p2@TFAP2A!1.02!11.77!TFAP2A;;chr5:3595977..3595999,+!p1@IRX1!1.02!9.41!IRX1;;chr16:51185172..51185197,-!p1@SALL1!1.02!9.41!SALL1;;chr17:7493405..7493419,-!p1@SOX15!1.02!9.41!SOX15;;chr2:177053386..177053402,+!p1@HOXD1!1.02!9.41!HOXD1;;chr5:72744445..72744466,-!p2@FOXD1!1.01!15.69!FOXD1;;chr7:44143925..44143970,+!p1@AEBP1!0.99!202.36!AEBP1;;chr3:52001426..52001447,-!p3@PCBP4!0.99!25.10!PCBP4;;chr3:69811858..69811881,+!p5@MITF!0.98!8.63!MITF;;chr7:27153428..27153440,-!p3@HOXA3!0.98!8.63!HOXA3;;chr16:86600870..86600921,+!p2@FOXC2!0.98!8.63!FOXC2;;chr12:54379029..54379057,+!p2@HOXC10!0.98!8.63!HOXC10;;chr19:49865646..49865718,-!p1@TEAD2!0.96!71.38!TEAD2;;chr12:2986206..2986258,-!p2@FOXM1!0.96!50.20!FOXM1;;chr2:239148671..239148686,-!p1@HES6!0.96!30.59!HES6;;chr14:21994337..21994442,-!p1@SALL2!0.96!22.75!SALL2;;chr17:41623009..41623053,-!p4@ETV4!0.96!13.33!ETV4;;chr16:54320158..54320200,-!p5@IRX3!0.96!11.77!IRX3;;chr17:46622070..46622109,-!p1@HOXB2!0.95!18.04!HOXB2;;chr21:38071403..38071428,+!p2@SIM2!0.95!7.84!SIM2;;chr6:50786591..50786614,+!p1@TFAP2B!0.95!7.84!TFAP2B;;chr7:27196267..27196311,-!p1@HOXA7!0.95!7.84!HOXA7;;chr17:70117153..70117174,+!p1@SOX9!0.94!82.36!SOX9;;chr3:52001396..52001425,-!p4@PCBP4!0.94!14.12!PCBP4;;chr12:66218003..66218018,+!p9@HMGA2!0.94!9.41!HMGA2;;chr17:46622440..46622477,-!p5@HOXB2!0.94!8.63!HOXB2;;chr1:935467..935484,-!p1@HES4!0.93!34.51!HES4;;chr16:54320675..54320715,-!p1@IRX3!0.93!16.47!IRX3;;chr12:54447599..54447630,+!p3@HOXC4!0.93!9.41!HOXC4;;chr7:28448965..28448994,+!p2@CREB5!0.92!26.67!CREB5;;chr11:63684602..63684664,-!p1@RCOR2!0.92!14.90!RCOR2;;chr16:86600458..86600461,+!p3@FOXC2!0.91!7.06!FOXC2;;chr17:46667561..46667572,-!p4@HOXB3!0.91!7.06!HOXB3;;c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| |expression_enrichment_score=chr2:114036488..114036504,-!p1@PAX8!2.30!197.66!PAX8;;chr17:36105042..36105060,-!p1@HNF1B!2.28!188.24!HNF1B;;chr1:201979703..201979721,+!p2@ELF3!2.08!120.01!ELF3;;chr17:46703687..46703740,-!p1@HOXB9!2.06!113.73!HOXB9;;chr1:201979743..201979762,+!p1@ELF3!1.98!94.12!ELF3;;chr17:46682321..46682362,-!p1@HOXB6!1.75!54.90!HOXB6;;chr6:134210243..134210257,+!p1@TCF21!1.67!45.49!TCF21;;chr16:86600426..86600441,+!p1@FOXC2!1.65!105.10!FOXC2;;chr7:27153454..27153469,-!p2@HOXA3!1.60!38.43!HOXA3;;chr6:34204921..34204939,+!p3@HMGA1!1.56!995.34!HMGA1;;chr7:27205136..27205164,-!p1@HOXA9!1.52!32.16!HOXA9;;chr17:35294075..35294102,+!p1@ENST00000559335!1.47!28.24!LHX1;;chr11:61520075..61520136,+!p1@C11orf9!1.46!57.26!C11orf9;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.45!27.45!HOXC5;;chr17:46622205..46622218,-!p3@HOXB2!1.42!29.02!HOXB2;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.42!25.10!POU3F3;;chr19:45260775..45260838,+!p5@BCL3!1.39!30.59!BCL3;;chr21:38071430..38071456,+!p1@SIM2!1.39!23.53!SIM2;;chr20:42295745..42295765,+!p1@MYBL2!1.37!349.82!MYBL2;;chr10:102505493..102505546,+!p2@PAX2!1.36!21.96!PAX2;;chr6:34204672..34204692,+!p1@HMGA1!1.35!2298.14!HMGA1;;chr20:42295713..42295738,+!p2@MYBL2!1.35!123.14!MYBL2;;chr7:27196217..27196246,-!p2@HOXA7!1.31!19.61!HOXA7;;chr7:27205106..27205134,-!p2@HOXA9!1.31!19.61!HOXA9;;chr17:46703826..46703845,-!p3@HOXB9!1.30!18.82!HOXB9;;chr5:2751762..2751784,-!p1@IRX2!1.26!17.26!IRX2;;chr5:72744594..72744609,-!p1@FOXD1!1.22!70.59!FOXD1;;chr7:27224795..27224840,-!p2@HOXA11!1.20!14.90!HOXA11;;chr7:27224842..27224872,-!p1@HOXA11!1.20!14.90!HOXA11;;chr17:41623692..41623715,-!p1@ETV4!1.18!59.61!ETV4;;chr12:66218255..66218304,+!p3@HMGA2!1.18!37.65!HMGA2;;chr1:209979467..209979494,-!p1@IRF6!1.18!15.69!IRF6;;chr11:32457075..32457095,-!p1@WT1!1.18!14.12!WT1;;chr17:46690839..46690884,-!p1@HOXB8!1.18!14.12!HOXB8;;chr19:17356436..17356481,-!p3@NR2F6!1.17!23.53!NR2F6;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!1.17!14.90!GLIS1;;chr17:46622229..46622257,-!p6@HOXB2!1.16!15.69!HOXB2;;chr7:27192185..27192209,-!p1@HOXA3!1.16!13.33!HOXA3;;chr12:54378923..54378966,+!p1@HOXC10!1.16!13.33!HOXC10;;chr12:54393880..54393962,+!p1@HOXC9!1.16!13.33!HOXC9;;chr20:31350184..31350200,+!p1@DNMT3B!1.13!25.88!DNMT3B;;chr20:50721803..50721857,-!p2@ZFP64!1.11!18.82!ZFP64;;chr5:3595934..3595957,+!p2@IRX1!1.11!11.77!IRX1;;chr17:46675558..46675577,-!p2@HOXB6!1.11!11.77!HOXB6;;chr2:5832508..5832524,+!p1@SOX11!1.11!11.77!SOX11;;chr2:176987441..176987454,+!p1@HOXD9!1.08!10.98!HOXD9;;chr2:176994408..176994492,+!p1@HOXD8!1.08!10.98!HOXD8;;chr7:27170359..27170381,-!p1@HOXA4!1.08!10.98!HOXA4;;chr7:27213893..27213954,-!p1@HOXA10!1.08!10.98!HOXA10;;chr17:46667594..46667619,-!p1@HOXB3!1.08!10.98!HOXB3;;chr12:3069037..3069119,+!p2@TEAD4!1.06!36.86!TEAD4;;chr17:41622765..41622821,-!p2@ETV4!1.05!15.69!ETV4;;chr16:54964740..54964789,+!p1@IRX5!1.05!14.90!IRX5;;chr17:36105074..36105086,-!p2@HNF1B!1.05!10.20!HNF1B;;chr10:102505327..102505344,+!p1@PAX2!1.05!10.20!PAX2;;chr3:52001448..52001478,-!p2@PCBP4!1.04!139.61!PCBP4;;chr11:65667846..65667868,-!p1@FOSL1!1.03!260.40!FOSL1;;chr17:38465413..38465438,+!p5@RARA!1.03!15.69!RARA;;chr11:65667884..65667895,-!p2@FOSL1!1.02!37.65!FOSL1;;chr6:10415276..10415341,-!p2@TFAP2A!1.02!11.77!TFAP2A;;chr5:3595977..3595999,+!p1@IRX1!1.02!9.41!IRX1;;chr16:51185172..51185197,-!p1@SALL1!1.02!9.41!SALL1;;chr17:7493405..7493419,-!p1@SOX15!1.02!9.41!SOX15;;chr2:177053386..177053402,+!p1@HOXD1!1.02!9.41!HOXD1;;chr5:72744445..72744466,-!p2@FOXD1!1.01!15.69!FOXD1;;chr7:44143925..44143970,+!p1@AEBP1!0.99!202.36!AEBP1;;chr3:52001426..52001447,-!p3@PCBP4!0.99!25.10!PCBP4;;chr3:69811858..69811881,+!p5@MITF!0.98!8.63!MITF;;chr7:27153428..27153440,-!p3@HOXA3!0.98!8.63!HOXA3;;chr16:86600870..86600921,+!p2@FOXC2!0.98!8.63!FOXC2;;chr12:54379029..54379057,+!p2@HOXC10!0.98!8.63!HOXC10;;chr19:49865646..49865718,-!p1@TEAD2!0.96!71.38!TEAD2;;chr12:2986206..2986258,-!p2@FOXM1!0.96!50.20!FOXM1;;chr2:239148671..239148686,-!p1@HES6!0.96!30.59!HES6;;chr14:21994337..21994442,-!p1@SALL2!0.96!22.75!SALL2;;chr17:41623009..41623053,-!p4@ETV4!0.96!13.33!ETV4;;chr16:54320158..54320200,-!p5@IRX3!0.96!11.77!IRX3;;chr17:46622070..46622109,-!p1@HOXB2!0.95!18.04!HOXB2;;chr21:38071403..38071428,+!p2@SIM2!0.95!7.84!SIM2;;chr6:50786591..50786614,+!p1@TFAP2B!0.95!7.84!TFAP2B;;chr7:27196267..27196311,-!p1@HOXA7!0.95!7.84!HOXA7;;chr17:70117153..70117174,+!p1@SOX9!0.94!82.36!SOX9;;chr3:52001396..52001425,-!p4@PCBP4!0.94!14.12!PCBP4;;chr12:66218003..66218018,+!p9@HMGA2!0.94!9.41!HMGA2;;chr17:46622440..46622477,-!p5@HOXB2!0.94!8.63!HOXB2;;chr1:935467..935484,-!p1@HES4!0.93!34.51!HES4;;chr16:54320675..54320715,-!p1@IRX3!0.93!16.47!IRX3;;chr12:54447599..54447630,+!p3@HOXC4!0.93!9.41!HOXC4;;chr7:28448965..28448994,+!p2@CREB5!0.92!26.67!CREB5;;chr11:63684602..63684664,-!p1@RCOR2!0.92!14.90!RCOR2;;chr16:86600458..86600461,+!p3@FOXC2!0.91!7.06!FOXC2;;chr17:46667561..46667572,-!p4@HOXB3!0.91!7.06!HOXB3;;chr2:122042770..122042785,-!p1@TFCP2L1!0.91!7.06!TFCP2L1;;chr3:69811882..69811898,+!p6@MITF!0.91!7.06!MITF;;chr16:8962853..8962878,-!p1@CARHSP1!0.90!429.04!CARHSP1;;chr16:29817789..29817838,+!p2@MAZ!0.90!98.04!MAZ;;chr17:46688334..46688385,-!p1@HOXB7!0.90!10.20!HOXB7;;chr12:66218183..66218209,+!p4@HMGA2!0.89!13.33!HMGA2;;chr6:34204642..34204664,+!p2@HMGA1!0.88!938.08!HMGA1;;chr12:2986275..2986363,-!p1@FOXM1!0.88!69.02!FOXM1;;chr19:19516464..19516492,+!p4@GATAD2A!0.88!34.51!GATAD2A;;chr6:1610293..1610310,+!p1@FOXC1!0.87!10.98!FOXC1;;chr17:41622834..41622883,-!p6@ETV4!0.87!7.84!ETV4;;chr20:32274179..32274213,-!p1@E2F1!0.86!43.92!E2F1;;chr11:65686952..65686975,+!p5@DRAP1!0.86!36.08!DRAP1;;chr22:41697497..41697515,+!p2@ZC3H7B!0.86!18.04!ZC3H7B;;chr11:46299539..46299620,+!p2@CREB3L1!0.86!10.98!CREB3L1;;chr10:102505954..102505973,+!p3@PAX2!0.86!6.27!PAX2;;chr17:46667628..46667642,-!p2@HOXB3!0.86!6.27!HOXB3;;chr17:46671504..46671541,-!p2@HOXB5!0.86!6.27!HOXB5;;chr17:46692318..46692362,-!p5@HOXB8!0.86!6.27!HOXB8;;chr7:27196196..27196210,-!p5@HOXA7!0.86!6.27!HOXA7;;chr7:27219754..27219759,-!p16@HOXA10!0.86!6.27!HOXA10;;chr2:176969228..176969260,+!p1@HOXD11!0.86!6.27!HOXD11;;chr6:41514078..41514158,+!p1@FOXP4!0.85!58.83!FOXP4;;chr17:7492684..7492778,-!p2@SOX15!0.85!13.33!SOX15;;chr17:41622925..41622976,-!p3@ETV4!0.85!9.41!ETV4;;chr15:83953397..83953425,-!p1@BNC1!0.85!7.06!BNC1;;chr15:67357924..67357952,+!p2@SMAD3!0.84!42.35!SMAD3;;chr5:176738887..176738934,-!p1@MXD3!0.84!42.35!MXD3;;chr16:29818160..29818188,+!p6@MAZ!0.84!29.81!MAZ;;chr12:66218598..66218645,+!p2@HMGA2!0.84!29.02!HMGA2;;chr8:145669791..145669834,-!p1@TONSL!0.84!18.04!TONSL;;chr16:8962544..8962584,-!p2@CARHSP1!0.84!14.12!CARHSP1;;chr16:54320101..54320125,-!p4@IRX3!0.84!8.63!IRX3;;chr17:3571887..3571918,-!p2@TAX1BP3!0.83!69.81!TAX1BP3;;chr14:61116183..61116208,-!p1@SIX1!0.83!23.53!SIX1;;chr6:34204973..34204990,+!p4@HMGA1!0.82!80.79!HMGA1;;chr11:46299199..46299233,+!p1@CREB3L1!0.82!31.37!CREB3L1;;chr1:8938766..8938774,-!p2@ENO1!0.81!406.29!ENO1;;chr7:44143738..44143760,+!p4@AEBP1!0.81!6.27!AEBP1;;chr5:3595961..3595975,+!p3@IRX1!0.81!5.49!IRX1;;chr7:27219833..27219845,-!p7@HOXA10!0.81!5.49!HOXA10;;chr11:32457413..32457431,-!p2@WT1!0.81!5.49!WT1;;chr17:46692457..46692484,-!p2@HOXB8!0.81!5.49!HOXB8;;chr17:46692624..46692659,-!p3@HOXB8!0.81!5.49!HOXB8;;chr2:45236540..45236577,-!p1@SIX2!0.81!5.49!SIX2;;chr9:4300050..4300118,-!p1@GLIS3!0.79!36.86!GLIS3;;chr11:65686802..65686818,+!p6@DRAP1!0.79!9.41!DRAP1;;chr12:66218212..66218244,+!p5@HMGA2!0.79!7.84!HMGA2;;chr20:50159198..50159299,-!p1@NFATC2!0.79!7.84!NFATC2;;chr8:128748308..128748324,+!p2@MYC!0.78!153.73!MYC;;chr16:29817841..29817865,+!p1@MAZ!0.78!116.87!MAZ;;chr19:59031131..59031193,-!p1@ZBTB45!0.78!71.38!ZBTB45;;chr12:124873852..124873881,-!p3@NCOR2!0.78!32.94!NCOR2;;chr19:45252008..45252024,+!p2@BCL3!0.78!18.04!BCL3;;chr17:3571863..3571881,-!p1@TAX1BP3!0.77!380.41!TAX1BP3;;chr19:46271505..46271575,-!p2@SIX5!0.77!13.33!SIX5;;chr19:57183114..57183145,-!p1@ZNF835!0.77!5.49!ZNF835;;chr19:56652643..56652683,+!p1@ZNF444!0.76!28.24!ZNF444;;chr10:48355030..48355090,+!p1@ZNF488!0.76!6.27!ZNF488;;chr1:54203698..54203719,-!p@chr1:54203698..54203719,-!0.76!4.71!GLIS1;;chr16:51185573..51185593,-!p3@SALL1!0.76!4.71!SALL1;;chr16:54964899..54964914,+!p2@IRX5!0.76!4.71!IRX5;;chr17:41622731..41622764,-!p5@ETV4!0.76!4.71!ETV4;;chr17:46703212..46703238,-!p2@HOXB9!0.76!4.71!HOXB9;;chr5:2751785..2751808,-!p2@IRX2!0.76!4.71!IRX2;;chr6:34210478..34210481,+!p8@HMGA1!0.76!4.71!HMGA1;;chr7:27183291..27183324,-!p1@HOXA5!0.76!4.71!HOXA5;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!0.76!4.71!POU3F3;;chr2:176987463..176987479,+!p2@HOXD9!0.76!4.71!HOXD9;;chr2:177016272..177016286,+!p2@HOXD4!0.76!4.71!HOXD4;;chr2:177016336..177016350,+!p1@HOXD4!0.76!4.71!HOXD4;;chr2:45236579..45236596,-!p2@SIX2!0.76!4.71!SIX2;;chr4:299227..299272,-!p1@ZNF732!0.76!4.71!ZNF732;;chr10:135122380..135122458,+!p1@ZNF511!0.75!157.65!ZNF511;;chr19:45251943..45252006,+!p1@BCL3!0.75!134.91!BCL3;;chr19:1863591..1863611,-!p2@KLF16!0.75!49.41!KLF16;;chr19:19516507..19516539,+!p7@GATAD2A!0.75!14.90!GATAD2A;;chr17:46675420..46675465,-!p3@HOXB6!0.75!5.49!HOXB6;;chr19:6424783..6424802,-!p2@KHSRP!0.74!101.18!KHSRP;;chr2:242576460..242576600,-!p1@THAP4!0.74!75.30!THAP4;;chr11:65687362..65687436,+!p3@DRAP1!0.74!22.75!DRAP1;;chr16:29818199..29818216,+!p11@MAZ!0.74!7.84!MAZ;;chr2:25475120..25475176,-!p2@DNMT3A!0.74!6.27!DNMT3A;;chr17:38498510..38498540,+!p7@RARA!0.74!5.49!RARA;;chr19:6424813..6424835,-!p1@KHSRP!0.73!304.33!KHSRP;;chr19:1863568..1863586,-!p1@KLF16!0.73!159.22!KLF16;;chr19:3572925..3573014,+!p1@HMG20B!0.73!144.32!HMG20B;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.73!49.41!GLIS2;;chr11:65686732..65686756,+!p2@DRAP1!0.73!20.39!DRAP1;;chr14:21994449..21994524,-!p2@SALL2!0.73!14.12!SALL2;;chr12:66218378..66218401,+!p6@HMGA2!0.73!7.06!HMGA2;;chr19:49864746..49864780,-!p2@TEAD2!0.73!6.27!TEAD2;;chr12:132628963..132629027,+!p1@NOC4L!0.72!69.02!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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002518;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:1000494;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001008;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002113;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004122 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
Line 36: | Line 43: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Renal%2520Epithelial%2520Cells%252c%2520donor1.CNhs11332.11517-119H5.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Renal%2520Epithelial%2520Cells%252c%2520donor1.CNhs11332.11517-119H5.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Renal%2520Epithelial%2520Cells%252c%2520donor1.CNhs11332.11517-119H5.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Renal%2520Epithelial%2520Cells%252c%2520donor1.CNhs11332.11517-119H5.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Renal%2520Epithelial%2520Cells%252c%2520donor1.CNhs11332.11517-119H5.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11517-119H5 | |id=FF:11517-119H5 | ||
|is_a=EFO:0002091;;FF:0000151 | |is_a=EFO:0002091;;FF:0000151 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs11332 | |||
|library_id_phase_based=2:CNhs11332 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11517 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10011.CCGTCC.11517 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11517 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10011.CCGTCC.11517 | |||
|name=Renal Epithelial Cells, donor1 | |name=Renal Epithelial Cells, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 44: | Line 64: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11332,LSID768,release014,COMPLETED | |profile_hcage=CNhs11332,LSID768,release014,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10011,,, | |profile_srnaseq=SRhi10011,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0.125739994508404,0,0,0,0,0.0911619589304219,0,0.132351175472454,-0.156663566068538,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0981569786683804,0,0,0,0,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0.251479989016808,0,0.155085441407118,0,0,0,0,0,0,0,0,0.101524973395569,0,0,0,0,0,0.184308170917148,0.251479989016808,-0.0969923612426051,0,0,0.154136361803711,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0602034940068819,0.291800967963802,0,0,0,0.312624783766842,0.134862321366888,0,0,0,0,-0.0980353512377064,-0.012737206292491,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.096373593922461,0,0,0,0.109070653027179,0.260231533959059,0,0,0,0,0,0 | |||
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| |||
|rna_box=119 | |rna_box=119 | ||
|rna_catalog_number=SC4125 | |rna_catalog_number=SC4125 | ||
Line 58: | Line 81: | ||
|rna_tube_id=119H5 | |rna_tube_id=119H5 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10011.CCGTCC | |||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog=lot:0546 | |sample_cell_catalog=lot:0546 | ||
|sample_cell_line= | |sample_cell_line= | ||
Line 80: | Line 105: | ||
|top_motifs=XCPE1{core}:3.20883137547;SP1:2.43651972267;POU2F1..3:2.06248300908;ZNF423:2.05292760357;GTF2A1,2:2.04828986018;TFAP2{A,C}:1.90547187919;PBX1:1.77330953045;TFCP2:1.75016051508;ZNF148:1.72843596027;EBF1:1.56496409751;RXRA_VDR{dimer}:1.53132326793;RXR{A,B,G}:1.5171972088;MYOD1:1.4530040849;HNF1A:1.39352027562;SPZ1:1.35955067121;TFAP2B:1.29740389569;SOX{8,9,10}:1.24631268928;bHLH_family:1.22962010167;NR6A1:1.16889495622;VSX1,2:1.1664968792;NKX2-3_NKX2-5:1.14463235183;ESRRA:1.13344508914;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.1261413532;HIC1:1.07371680454;ESR1:1.05490364;SNAI1..3:1.05412243598;ZEB1:1.0409641478;NFY{A,B,C}:1.02872953655;HOX{A5,B5}:1.0156865162;MTF1:0.928794150665;GLI1..3:0.905876176749;NR5A1,2:0.903716153436;RREB1:0.900335270983;PAX5:0.880722556662;TEAD1:0.820439548611;TP53:0.811222649437;IKZF1:0.790727237522;LEF1_TCF7_TCF7L1,2:0.780980529751;ZIC1..3:0.727371279308;NR3C1:0.718911354125;HAND1,2:0.696922806555;LMO2:0.670609206679;JUN:0.629212854922;LHX3,4:0.625342665245;TBX4,5:0.613357703131;GFI1:0.600246586085;ADNP_IRX_SIX_ZHX:0.523020225389;NR1H4:0.51381264143;SRF:0.508614463109;ZNF143:0.502892739331;ONECUT1,2:0.498610680419;PATZ1:0.480739790215;E2F1..5:0.469010528316;GZF1:0.465946346906;FOXQ1:0.461497837774;GTF2I:0.455413409483;PAX8:0.451249629442;TFDP1:0.421590745121;STAT5{A,B}:0.359000348913;PPARG:0.351575169296;TBP:0.350770113841;EP300:0.330880697361;FOSL2:0.324763602856;TLX1..3_NFIC{dimer}:0.306241502096;GFI1B:0.282472377544;BACH2:0.243575671149;FOS_FOS{B,L1}_JUN{B,D}:0.230480745502;SOX2:0.216249593286;HNF4A_NR2F1,2:0.205499966539;ZBTB6:0.203014100167;REST:0.191220927241;NFE2L1:0.162247719497;MAZ:0.128212665339;GCM1,2:0.115982222302;SOX17:0.0896624749803;POU5F1:0.0854724318582;NFE2:0.0836643163183;PRRX1,2:0.0785100693887;NFE2L2:0.0496296099173;HOXA9_MEIS1:0.048549030905;STAT2,4,6:0.0469873036422;MED-1{core}:0.0268785622024;ZFP161:-0.0140547147139;MEF2{A,B,C,D}:-0.018550554238;NFKB1_REL_RELA:-0.0228785386479;EGR1..3:-0.0335170152728;PAX1,9:-0.0392124727958;TAL1_TCF{3,4,12}:-0.0415642993113;POU3F1..4:-0.065433667411;ATF2:-0.0801049409318;TFAP4:-0.0930540970596;NANOG:-0.12325745877;POU1F1:-0.157161988153;HOX{A6,A7,B6,B7}:-0.182357068768;NRF1:-0.219760094802;AR:-0.223162566283;HLF:-0.229360020058;GATA6:-0.234890998284;OCT4_SOX2{dimer}:-0.256689680584;FOXM1:-0.263727488457;ETS1,2:-0.268709968523;BREu{core}:-0.271411333482;RFX1:-0.271806650951;RUNX1..3:-0.285909561673;CRX:-0.286737473432;NHLH1,2:-0.29085543755;ZNF238:-0.310000490069;KLF4:-0.315998669999;CDC5L:-0.331623067941;HES1:-0.334258583136;FOX{F1,F2,J1}:-0.346106860985;MZF1:-0.358903839379;TOPORS:-0.366860747572;DBP:-0.383025892755;MTE{core}:-0.386893255893;POU6F1:-0.388066425596;ARID5B:-0.413230201047;ELK1,4_GABP{A,B1}:-0.459482022169;CREB1:-0.513439964898;TEF:-0.523458404446;RORA:-0.523825632029;PAX6:-0.535172823785;MYB:-0.548349794259;CEBPA,B_DDIT3:-0.554059435529;SPIB:-0.565413489678;MYBL2:-0.572278483889;PDX1:-0.596318950681;NFIL3:-0.609033921975;SREBF1,2:-0.61538424634;XBP1:-0.625649906023;CUX2:-0.630348863849;UFEwm:-0.634065922899;PITX1..3:-0.638399172287;PAX2:-0.66529673715;STAT1,3:-0.73375636593;SOX5:-0.734857791722;FOX{I1,J2}:-0.738520158046;ATF6:-0.753725220808;ZNF384:-0.765256524488;SPI1:-0.766621437375;YY1:-0.770542076046;NFATC1..3:-0.778426773492;FOXL1:-0.805255886965;ATF4:-0.806939446113;HMX1:-0.818962516528;ALX4:-0.851867643488;FOXA2:-0.893002557575;EN1,2:-0.908909462646;NKX3-1:-0.921163651141;HSF1,2:-0.950595554493;PAX3,7:-0.958826798914;SMAD1..7,9:-0.976303172115;PRDM1:-0.98406093388;FOX{D1,D2}:-0.992771321353;NKX6-1,2:-1.02617975133;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.03223260916;MYFfamily:-1.04775986562;IRF7:-1.06339733891;NANOG{mouse}:-1.0739025746;ATF5_CREB3:-1.0903290566;ELF1,2,4:-1.10202776737;IRF1,2:-1.11300055197;HOX{A4,D4}:-1.12948161162;AHR_ARNT_ARNT2:-1.15505517099;CDX1,2,4:-1.15679685222;ALX1:-1.17496154697;NKX3-2:-1.22790265766;RFX2..5_RFXANK_RFXAP:-1.23118911315;T:-1.25028539091;HIF1A:-1.2645586993;DMAP1_NCOR{1,2}_SMARC:-1.29205349544;HBP1_HMGB_SSRP1_UBTF:-1.29856933218;FOXP3:-1.33832904495;NKX2-2,8:-1.3412732606;TGIF1:-1.41235865273;EVI1:-1.41579175985;AIRE:-1.44349805682;FOXP1:-1.46043745815;MAFB:-1.54702085441;RBPJ:-1.5757071438;NKX2-1,4:-1.60693858;NFIX:-1.62926319573;FOXN1:-1.6841607016;FOXD3:-1.70519504317;IKZF2:-1.73801763207;GATA4:-1.80561123954;TLX2:-1.81650169837;ZBTB16:-1.82760055463;BPTF:-1.88516579191;FOXO1,3,4:-1.92760028445;HMGA1,2:-2.00355545193;PAX4:-2.42299850182 | |top_motifs=XCPE1{core}:3.20883137547;SP1:2.43651972267;POU2F1..3:2.06248300908;ZNF423:2.05292760357;GTF2A1,2:2.04828986018;TFAP2{A,C}:1.90547187919;PBX1:1.77330953045;TFCP2:1.75016051508;ZNF148:1.72843596027;EBF1:1.56496409751;RXRA_VDR{dimer}:1.53132326793;RXR{A,B,G}:1.5171972088;MYOD1:1.4530040849;HNF1A:1.39352027562;SPZ1:1.35955067121;TFAP2B:1.29740389569;SOX{8,9,10}:1.24631268928;bHLH_family:1.22962010167;NR6A1:1.16889495622;VSX1,2:1.1664968792;NKX2-3_NKX2-5:1.14463235183;ESRRA:1.13344508914;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.1261413532;HIC1:1.07371680454;ESR1:1.05490364;SNAI1..3:1.05412243598;ZEB1:1.0409641478;NFY{A,B,C}:1.02872953655;HOX{A5,B5}:1.0156865162;MTF1:0.928794150665;GLI1..3:0.905876176749;NR5A1,2:0.903716153436;RREB1:0.900335270983;PAX5:0.880722556662;TEAD1:0.820439548611;TP53:0.811222649437;IKZF1:0.790727237522;LEF1_TCF7_TCF7L1,2:0.780980529751;ZIC1..3:0.727371279308;NR3C1:0.718911354125;HAND1,2:0.696922806555;LMO2:0.670609206679;JUN:0.629212854922;LHX3,4:0.625342665245;TBX4,5:0.613357703131;GFI1:0.600246586085;ADNP_IRX_SIX_ZHX:0.523020225389;NR1H4:0.51381264143;SRF:0.508614463109;ZNF143:0.502892739331;ONECUT1,2:0.498610680419;PATZ1:0.480739790215;E2F1..5:0.469010528316;GZF1:0.465946346906;FOXQ1:0.461497837774;GTF2I:0.455413409483;PAX8:0.451249629442;TFDP1:0.421590745121;STAT5{A,B}:0.359000348913;PPARG:0.351575169296;TBP:0.350770113841;EP300:0.330880697361;FOSL2:0.324763602856;TLX1..3_NFIC{dimer}:0.306241502096;GFI1B:0.282472377544;BACH2:0.243575671149;FOS_FOS{B,L1}_JUN{B,D}:0.230480745502;SOX2:0.216249593286;HNF4A_NR2F1,2:0.205499966539;ZBTB6:0.203014100167;REST:0.191220927241;NFE2L1:0.162247719497;MAZ:0.128212665339;GCM1,2:0.115982222302;SOX17:0.0896624749803;POU5F1:0.0854724318582;NFE2:0.0836643163183;PRRX1,2:0.0785100693887;NFE2L2:0.0496296099173;HOXA9_MEIS1:0.048549030905;STAT2,4,6:0.0469873036422;MED-1{core}:0.0268785622024;ZFP161:-0.0140547147139;MEF2{A,B,C,D}:-0.018550554238;NFKB1_REL_RELA:-0.0228785386479;EGR1..3:-0.0335170152728;PAX1,9:-0.0392124727958;TAL1_TCF{3,4,12}:-0.0415642993113;POU3F1..4:-0.065433667411;ATF2:-0.0801049409318;TFAP4:-0.0930540970596;NANOG:-0.12325745877;POU1F1:-0.157161988153;HOX{A6,A7,B6,B7}:-0.182357068768;NRF1:-0.219760094802;AR:-0.223162566283;HLF:-0.229360020058;GATA6:-0.234890998284;OCT4_SOX2{dimer}:-0.256689680584;FOXM1:-0.263727488457;ETS1,2:-0.268709968523;BREu{core}:-0.271411333482;RFX1:-0.271806650951;RUNX1..3:-0.285909561673;CRX:-0.286737473432;NHLH1,2:-0.29085543755;ZNF238:-0.310000490069;KLF4:-0.315998669999;CDC5L:-0.331623067941;HES1:-0.334258583136;FOX{F1,F2,J1}:-0.346106860985;MZF1:-0.358903839379;TOPORS:-0.366860747572;DBP:-0.383025892755;MTE{core}:-0.386893255893;POU6F1:-0.388066425596;ARID5B:-0.413230201047;ELK1,4_GABP{A,B1}:-0.459482022169;CREB1:-0.513439964898;TEF:-0.523458404446;RORA:-0.523825632029;PAX6:-0.535172823785;MYB:-0.548349794259;CEBPA,B_DDIT3:-0.554059435529;SPIB:-0.565413489678;MYBL2:-0.572278483889;PDX1:-0.596318950681;NFIL3:-0.609033921975;SREBF1,2:-0.61538424634;XBP1:-0.625649906023;CUX2:-0.630348863849;UFEwm:-0.634065922899;PITX1..3:-0.638399172287;PAX2:-0.66529673715;STAT1,3:-0.73375636593;SOX5:-0.734857791722;FOX{I1,J2}:-0.738520158046;ATF6:-0.753725220808;ZNF384:-0.765256524488;SPI1:-0.766621437375;YY1:-0.770542076046;NFATC1..3:-0.778426773492;FOXL1:-0.805255886965;ATF4:-0.806939446113;HMX1:-0.818962516528;ALX4:-0.851867643488;FOXA2:-0.893002557575;EN1,2:-0.908909462646;NKX3-1:-0.921163651141;HSF1,2:-0.950595554493;PAX3,7:-0.958826798914;SMAD1..7,9:-0.976303172115;PRDM1:-0.98406093388;FOX{D1,D2}:-0.992771321353;NKX6-1,2:-1.02617975133;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.03223260916;MYFfamily:-1.04775986562;IRF7:-1.06339733891;NANOG{mouse}:-1.0739025746;ATF5_CREB3:-1.0903290566;ELF1,2,4:-1.10202776737;IRF1,2:-1.11300055197;HOX{A4,D4}:-1.12948161162;AHR_ARNT_ARNT2:-1.15505517099;CDX1,2,4:-1.15679685222;ALX1:-1.17496154697;NKX3-2:-1.22790265766;RFX2..5_RFXANK_RFXAP:-1.23118911315;T:-1.25028539091;HIF1A:-1.2645586993;DMAP1_NCOR{1,2}_SMARC:-1.29205349544;HBP1_HMGB_SSRP1_UBTF:-1.29856933218;FOXP3:-1.33832904495;NKX2-2,8:-1.3412732606;TGIF1:-1.41235865273;EVI1:-1.41579175985;AIRE:-1.44349805682;FOXP1:-1.46043745815;MAFB:-1.54702085441;RBPJ:-1.5757071438;NKX2-1,4:-1.60693858;NFIX:-1.62926319573;FOXN1:-1.6841607016;FOXD3:-1.70519504317;IKZF2:-1.73801763207;GATA4:-1.80561123954;TLX2:-1.81650169837;ZBTB16:-1.82760055463;BPTF:-1.88516579191;FOXO1,3,4:-1.92760028445;HMGA1,2:-2.00355545193;PAX4:-2.42299850182 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11517-119H5;search_select_hide=table117:FF:11517-119H5 | |||
}} | }} |
Latest revision as of 18:05, 4 June 2020
Name: | Renal Epithelial Cells, donor1 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs11332 |
Sample type: | primary cells |
Genomic View: | UCSC |
RefEX: | Specific genes |
FANTOM CAT: | 1, 2, 3, 4, 5, 6 |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11332
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11332
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.0543 |
10 | 10 | 0.0073 |
100 | 100 | 0.473 |
101 | 101 | 0.0411 |
102 | 102 | 0.478 |
103 | 103 | 0.177 |
104 | 104 | 0.489 |
105 | 105 | 0.182 |
106 | 106 | 0.864 |
107 | 107 | 0.334 |
108 | 108 | 0.731 |
109 | 109 | 0.727 |
11 | 11 | 0.731 |
110 | 110 | 0.833 |
111 | 111 | 0.21 |
112 | 112 | 0.212 |
113 | 113 | 0.0737 |
114 | 114 | 0.0105 |
115 | 115 | 0.918 |
116 | 116 | 0.697 |
117 | 117 | 0.24 |
118 | 118 | 0.859 |
119 | 119 | 0.622 |
12 | 12 | 0.478 |
120 | 120 | 0.744 |
121 | 121 | 0.467 |
122 | 122 | 0.212 |
123 | 123 | 0.00227 |
124 | 124 | 0.211 |
125 | 125 | 0.195 |
126 | 126 | 0.929 |
127 | 127 | 0.238 |
128 | 128 | 0.589 |
129 | 129 | 0.263 |
13 | 13 | 0.897 |
130 | 130 | 0.0398 |
131 | 131 | 0.187 |
132 | 132 | 0.147 |
133 | 133 | 0.142 |
134 | 134 | 0.78 |
135 | 135 | 0.321 |
136 | 136 | 0.153 |
137 | 137 | 0.0643 |
138 | 138 | 0.0362 |
139 | 139 | 0.0122 |
14 | 14 | 0.566 |
140 | 140 | 0.227 |
141 | 141 | 0.076 |
142 | 142 | 0.708 |
143 | 143 | 0.404 |
144 | 144 | 0.705 |
145 | 145 | 0.768 |
146 | 146 | 0.0987 |
147 | 147 | 0.748 |
148 | 148 | 0.0128 |
149 | 149 | 0.686 |
15 | 15 | 0.189 |
150 | 150 | 0.474 |
151 | 151 | 0.749 |
152 | 152 | 0.107 |
153 | 153 | 0.0456 |
154 | 154 | 0.109 |
155 | 155 | 0.897 |
156 | 156 | 0.504 |
157 | 157 | 0.548 |
158 | 158 | 0.255 |
159 | 159 | 0.611 |
16 | 16 | 0.465 |
160 | 160 | 0.383 |
161 | 161 | 0.572 |
162 | 162 | 0.461 |
163 | 163 | 0.597 |
164 | 164 | 0.129 |
165 | 165 | 0.122 |
166 | 166 | 0.76 |
167 | 167 | 0.0482 |
168 | 168 | 0.33 |
169 | 169 | 0.445 |
17 | 17 | 0.918 |
18 | 18 | 0.326 |
19 | 19 | 0.731 |
2 | 2 | 0.51 |
20 | 20 | 0.977 |
21 | 21 | 0.337 |
22 | 22 | 0.378 |
23 | 23 | 0.593 |
24 | 24 | 0.917 |
25 | 25 | 0.343 |
26 | 26 | 0.541 |
27 | 27 | 0.69 |
28 | 28 | 0.243 |
29 | 29 | 0.312 |
3 | 3 | 0.0657 |
30 | 30 | 0.0528 |
31 | 31 | 0.61 |
32 | 32 | 0.341 |
33 | 33 | 0.279 |
34 | 34 | 0.408 |
35 | 35 | 0.0275 |
36 | 36 | 0.674 |
37 | 37 | 0.824 |
38 | 38 | 0.918 |
39 | 39 | 0.694 |
4 | 4 | 0.525 |
40 | 40 | 0.0357 |
41 | 41 | 0.409 |
42 | 42 | 0.234 |
43 | 43 | 0.184 |
44 | 44 | 0.507 |
45 | 45 | 0.309 |
46 | 46 | 0.396 |
47 | 47 | 0.551 |
48 | 48 | 0.986 |
49 | 49 | 0.111 |
5 | 5 | 0.143 |
50 | 50 | 0.317 |
51 | 51 | 0.871 |
52 | 52 | 0.714 |
53 | 53 | 0.149 |
54 | 54 | 0.957 |
55 | 55 | 0.0574 |
56 | 56 | 0.652 |
57 | 57 | 0.308 |
58 | 58 | 0.0767 |
59 | 59 | 0.237 |
6 | 6 | 0.228 |
60 | 60 | 0.631 |
61 | 61 | 0.766 |
62 | 62 | 0.0116 |
63 | 63 | 0.869 |
64 | 64 | 0.968 |
65 | 65 | 0.384 |
66 | 66 | 0.141 |
67 | 67 | 0.541 |
68 | 68 | 0.312 |
69 | 69 | 0.166 |
7 | 7 | 0.471 |
70 | 70 | 0.0798 |
71 | 71 | 0.0872 |
72 | 72 | 0.328 |
73 | 73 | 0.108 |
74 | 74 | 0.186 |
75 | 75 | 0.142 |
76 | 76 | 0.0637 |
77 | 77 | 0.406 |
78 | 78 | 0.489 |
79 | 79 | 0.207 |
8 | 8 | 0.844 |
80 | 80 | 0.495 |
81 | 81 | 0.025 |
82 | 82 | 0.0635 |
83 | 83 | 0.787 |
84 | 84 | 0.426 |
85 | 85 | 0.142 |
86 | 86 | 0.411 |
87 | 87 | 0.0986 |
88 | 88 | 0.81 |
89 | 89 | 0.847 |
9 | 9 | 0.734 |
90 | 90 | 0.00106 |
91 | 91 | 0.54 |
92 | 92 | 0.0408 |
93 | 93 | 0.633 |
94 | 94 | 0.0793 |
95 | 95 | 0.961 |
96 | 96 | 0.198 |
97 | 97 | 0.927 |
98 | 98 | 0.387 |
99 | 99 | 0.0221 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11332
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
1000497 (kidney cell)
0002518 (kidney epithelial cell)
1000449 (epithelial cell of nephron)
1000507 (kidney tubule cell)
1000494 (nephron tubule epithelial cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002113 (kidney)
0002100 (trunk)
0000483 (epithelium)
0000479 (tissue)
0000064 (organ part)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0006555 (excretory tube)
0006554 (urinary system structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0003103 (compound organ)
0009569 (subdivision of trunk)
0004211 (nephron epithelium)
0009773 (renal tubule)
0000489 (cavitated compound organ)
0005177 (trunk region element)
0005172 (abdomen element)
0001231 (nephron tubule)
0004819 (kidney epithelium)
0005173 (abdominal segment element)
0004810 (nephron tubule epithelium)
0001285 (nephron)
0011143 (upper urinary tract)
0001008 (renal system)
0002417 (abdominal segment of trunk)
0007684 (uriniferous tubule)
0000916 (abdomen)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000151 (human renal epithelial cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA