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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00004959
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004959
|accession_numbers=CAGE;DRX008232;DRR009104;DRZ000529;DRZ001914;DRZ011879;DRZ013264
|accession_numbers_RNASeq=sRNA-Seq;DRX037098;DRR041464;DRZ007106
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001638,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0000490,UBERON:0006914,UBERON:0000487,UBERON:0010260,UBERON:0003920,UBERON:0004638,UBERON:0007500,UBERON:0001981,UBERON:0002049,UBERON:0001986,UBERON:0010317,UBERON:0007798,UBERON:0004852,UBERON:0002066,UBERON:0004535,UBERON:0004537,UBERON:0004582,UBERON:0001009
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001638,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0000490,UBERON:0006914,UBERON:0000487,UBERON:0010260,UBERON:0003920,UBERON:0004638,UBERON:0007500,UBERON:0001981,UBERON:0002049,UBERON:0001986,UBERON:0010317,UBERON:0007798,UBERON:0004852,UBERON:0002066,UBERON:0004535,UBERON:0004537,UBERON:0004582,UBERON:0001009
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000076,CL:0002139,CL:0000213,CL:0002078,CL:0000215,CL:0000255,CL:0000115,CL:0000071,CL:0002543,CL:0002618
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000076,CL:0002139,CL:0000213,CL:0002078,CL:0000215,CL:0000255,CL:0000115,CL:0000071,CL:0002543,CL:0002618
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|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr20:62680984..62680999,-!p1@SOX18!2.37!302.89!SOX18;;chr8:10588010..10588030,-!p1@SOX7!2.02!103.73!SOX7;;chr21:39870339..39870443,-!p1@ERG!2.00!99.24!ERG;;chr12:96588368..96588394,+!p3@ELK3!1.90!202.75!ELK3;;chr18:53068911..53068935,-!p4@TCF4!1.86!79.93!TCF4;;chr3:169381420..169381535,-!p1@MECOM!1.76!66.01!MECOM;;chr10:94449703..94449718,+!p1@HHEX!1.50!113.84!HHEX;;chr17:6926362..6926377,+!p1@BCL6B!1.50!30.54!BCL6B;;chr6:34204921..34204939,+!p3@HMGA1!1.47!825.59!HMGA1;;chr7:27205106..27205134,-!p2@HOXA9!1.45!27.39!HOXA9;;chr8:55370487..55370503,+!p1@SOX17!1.45!27.39!SOX17;;chr19:46801639..46801699,+!p1@HIF3A!1.39!23.80!HIF3A;;chr7:27205136..27205164,-!p1@HOXA9!1.36!22.00!HOXA9;;chr18:22932080..22932170,-!p1@ZNF521!1.35!88.69!ZNF521;;chr17:46682321..46682362,-!p1@HOXB6!1.34!20.88!HOXB6;;chr9:14314131..14314147,-!p2@NFIB!1.27!96.77!NFIB;;chr8:106330656..106330684,+!p1@ZFPM2!1.27!45.13!ZFPM2;;chr7:27192185..27192209,-!p1@HOXA3!1.27!17.74!HOXA3;;chr7:15726243..15726293,-!p2@MEOX2!1.25!16.84!MEOX2;;chr13:72441315..72441454,-!p1@DACH1!1.20!29.86!DACH1;;chr5:71803177..71803255,-!p1@ZNF366!1.20!14.82!ZNF366;;chr15:96873984..96873999,+!p3@NR2F2!1.15!95.20!NR2F2;;chr17:46655672..46655697,-!p3@HOXB4!1.15!13.25!HOXB4;;chr12:66218183..66218209,+!p4@HMGA2!1.12!23.58!HMGA2;;chr12:66218212..66218244,+!p5@HMGA2!1.12!17.96!HMGA2;;chr19:13213511..13213545,-!p2@LYL1!1.11!12.80!LYL1;;chr20:50159198..50159299,-!p1@NFATC2!1.10!16.84!NFATC2;;chr3:128206762..128206781,-!p2@GATA2!1.07!67.58!GATA2;;chr12:66218255..66218304,+!p3@HMGA2!1.07!29.19!HMGA2;;chr10:94449675..94449694,+!p2@HHEX!1.05!27.62!HHEX;;chrY:21906594..21906622,-!p1@KDM5D!1.05!10.33!KDM5D;;chr9:16705069..16705086,-!p3@BNC2!1.05!10.33!BNC2;;chr6:28321971..28321995,-!p1@ZNF323!1.05!10.33!ZNF323;;chr13:72441074..72441172,-!p2@DACH1!1.05!10.10!DACH1;;chr18:53068982..53068993,-!p20@TCF4!1.05!10.10!TCF4;;chr19:53496768..53496799,-!p1@ZNF702P!1.01!14.37!ZNF702P;;chr19:13213399..13213414,-!p6@LYL1!1.01!9.21!LYL1;;chr2:176994408..176994492,+!p1@HOXD8!1.01!9.21!HOXD8;;chr1:200008734..200008765,+!p2@NR5A2!1.00!8.98!NR5A2;;chr10:8096631..8096660,+!p1@GATA3!0.99!10.55!GATA3;;chr7:15726296..15726315,-!p1@MEOX2!0.99!8.76!MEOX2;;chr6:34204672..34204692,+!p1@HMGA1!0.97!954.03!HMGA1;;chr11:128563948..128564003,+!p1@FLI1!0.97!103.73!FLI1;;chr16:86600426..86600441,+!p1@FOXC2!0.96!20.66!FOXC2;;chr1:47695003..47695042,-!p2@TAL1!0.95!7.86!TAL1;;chr2:46524537..46524553,+!p1@EPAS1!0.93!763.85!EPAS1;;chr12:66218598..66218645,+!p2@HMGA2!0.93!35.92!HMGA2;;chr9:14314106..14314119,-!p5@NFIB!0.93!13.92!NFIB;;chr5:88178983..88179012,-!p1@MEF2C!0.92!58.38!MEF2C;;chr17:46688334..46688385,-!p1@HOXB7!0.92!10.78!HOXB7;;chr7:115670804..115670825,-!p1@TFEC!0.92!7.41!TFEC;;chr2:177001290..177001315,+!p1@HOXD3!0.90!6.96!HOXD3;;chr1:214161272..214161322,+!p1@PROX1!0.89!9.65!PROX1;;chr19:46800289..46800327,+!p2@HIF3A!0.89!6.74!HIF3A;;chr15:96873921..96873946,+!p1@NR2F2!0.88!197.81!NR2F2;;chr9:14314566..14314618,-!p1@NFIB!0.88!83.30!NFIB;;chr17:46655704..46655718,-!p2@HOXB4!0.87!9.88!HOXB4;;chr15:96874012..96874042,+!p2@NR2F2!0.86!60.17!NR2F2;;chr8:93115584..93115642,-!p5@RUNX1T1!0.85!6.06!RUNX1T1;;chr1:47697539..47697573,-!p3@TAL1!0.85!6.06!TAL1;;chr20:50721803..50721857,-!p2@ZFP64!0.84!9.65!ZFP64;;chr15:90544532..90544563,+!p1@ZNF710!0.83!12.12!ZNF710;;chr17:46687959..46688007,-!p2@HOXB7!0.83!8.08!HOXB7;;chr18:22932004..22932021,-!p2@ZNF521!0.83!5.84!ZNF521;;chr2:177053386..177053402,+!p1@HOXD1!0.83!5.84!HOXD1;;chr10:31288370..31288393,-!p3@ZNF438!0.83!5.84!ZNF438;;chr3:168865194..168865245,-!p3@MECOM!0.82!7.41!MECOM;;chr22:19748231..19748317,+!p1@TBX1!0.82!5.61!TBX1;;chr9:124991204..124991246,-!p1@LHX6!0.81!5.39!LHX6;;chr12:66218836..66218888,+!p1@HMGA2!0.79!52.54!HMGA2;;chr12:2986206..2986258,-!p2@FOXM1!0.79!33.68!FOXM1;;chr1:205601064..205601087,-!p4@ELK4!0.79!10.55!ELK4;;chr5:88179195..88179224,-!p3@MEF2C!0.79!8.53!MEF2C;;chr7:27224842..27224872,-!p1@HOXA11!0.79!5.16!HOXA11;;chrY:2803415..2803468,+!p1@ZFY!0.79!5.16!ZFY;;chr5:176738887..176738934,-!p1@MXD3!0.78!36.82!MXD3;;chr18:53257001..53257015,-!p5@TCF4!0.78!8.98!TCF4;;chr20:42295745..42295765,+!p1@MYBL2!0.77!87.12!MYBL2;;chr13:41240717..41240735,-!p2@FOXO1!0.76!35.70!FOXO1;;chr3:168864315..168864339,-!p2@MECOM!0.76!8.31!MECOM;;chr13:41240737..41240787,-!p1@FOXO1!0.74!59.72!FOXO1;;chr7:149470641..149470694,-!p1@ZNF467!0.74!22.45!ZNF467;;chr2:25475120..25475176,-!p2@DNMT3A!0.74!6.29!DNMT3A;;chrX:66763815..66763854,+!p2@AR!0.74!6.06!AR;;chr8:106330696..106330719,+!p2@ZFPM2!0.74!5.84!ZFPM2;;chr13:72441506..72441562,-!p3@DACH1!0.74!4.49!DACH1;;chr4:146402843..146402864,+!p3@SMAD1!0.73!9.21!SMAD1;;chrX:66763856..66763896,+!p1@AR!0.73!6.51!AR;;chr6:28321909..28321965,-!p3@ZNF323!0.72!4.27!ZNF323;;chr11:128563652..128563689,+!p3@FLI1!0.72!4.27!FLI1;;chr17:46690839..46690884,-!p1@HOXB8!0.72!4.27!HOXB8;;chr18:22931979..22931992,-!p3@ZNF521!0.72!4.27!ZNF521;;chr18:19749541..19749557,+!p1@GATA6!0.71!14.37!GATA6;;chr20:42295713..42295738,+!p2@MYBL2!0.70!26.49!MYBL2;;chr11:113930291..113930339,+!p2@ZBTB16!0.70!6.96!ZBTB16;;chr17:6926381..6926392,+!p2@BCL6B!0.70!4.04!BCL6B;;chr9:14314066..14314075,-!p11@NFIB!0.70!4.04!NFIB;;chr20:590944..590960,-!p1@TCF15!0.70!4.04!TCF15;;chr15:57210961..57211012,+!p3@TCF12!0.68!13.47!TCF12;;chr17:46687935..46687950,-!p3@HOXB7!0.68!3.82!HOXB7;;chr12:2986275..2986363,-!p1@FOXM1!0.66!41.76!FOXM1;;chr9:14314522..14314556,-!p3@NFIB!0.66!9.21!NFIB;;chr11:113930425..113930471,+!p1@ZBTB16!0.66!5.39!ZBTB16;;chr17:46691732..46691766,-!p4@HOXB8!0.66!3.59!HOXB8;;chr7:15726220..15726236,-!p4@MEOX2!0.66!3.59!MEOX2;;chr7:27183291..27183324,-!p1@HOXA5!0.66!3.59!HOXA5;;chr15:77713299..77713316,+!p3@HMG20A!0.65!5.84!HMG20A;;chr6:126112074..126112144,+!p1@NCOA7!0.64!53.21!NCOA7;;chr18:53255415..53255491,-!p1@TCF4!0.64!33.23!TCF4;;chr6:130339710..130339745,+!p1@L3MBTL3!0.64!31.43!L3MBTL3;;chr17:41623692..41623715,-!p1@ETV4!0.64!16.39!ETV4;;chr18:53177984..53178004,-!p17@TCF4!0.64!3.37!TCF4;;chr10:94451574..94451587,+!p6@HHEX!0.64!3.37!HHEX;;chr8:30890810..30890880,-!p1@PURG!0.64!3.37!PURG;;chr8:93107451..93107468,-!p2@RUNX1T1!0.64!3.37!RUNX1T1;;chr9:14314946..14314983,-!p8@NFIB!0.64!3.37!NFIB;;chr1:61547894..61547968,+!p2@NFIA!0.63!10.78!NFIA;;chr1:205601000..205601055,-!p2@ELK4!0.62!15.27!ELK4;;chr5:88179017..88179046,-!p2@MEF2C!0.62!14.82!MEF2C;;chr12:3069037..3069119,+!p2@TEAD4!0.62!12.57!TEAD4;;chr11:128562372..128562397,+!p4@FLI1!0.62!3.14!FLI1;;chr12:80084018..80084035,-!p17@PAWR!0.62!3.14!PAWR;;chr9:22447422..22447483,+!p1@DMRTA1!0.62!3.14!DMRTA1;;chr18:53068940..53068951,-!p21@TCF4!0.62!3.14!TCF4;;chr7:27169801..27169844,-!p2@HOXA4!0.62!3.14!HOXA4;;chr19:49865646..49865718,-!p1@TEAD2!0.61!31.21!TEAD2;;chr3:178789522..178789564,-!p2@ZMAT3!0.61!26.72!ZMAT3;;chr12:66218152..66218174,+!p10@HMGA2!0.61!3.37!HMGA2;;chr20:42543441..42543497,+!p1@TOX2!0.60!15.72!TOX2;;chr9:116638565..116638606,+!p1@ZNF618!0.60!15.04!ZNF618;;chr6:29648890..29648944,-!p1@ZFP57!0.59!2.92!ZFP57;;chr7:27170359..27170381,-!p1@HOXA4!0.59!2.92!HOXA4;;chr7:27196267..27196311,-!p1@HOXA7!0.59!2.92!HOXA7;;chr1:47696918..47696935,-!p6@TAL1!0.59!2.92!TAL1;;chr18:53068893..53068902,-!p28@TCF4!0.59!2.92!TCF4;;chr19:13213465..13213478,-!p7@LYL1!0.59!2.92!LYL1;;chr12:27485823..27485868,+!p2@ARNTL2!0.57!13.25!ARNTL2;;chr17:46622114..46622138,-!p4@HOXB2!0.57!4.49!HOXB2;;chr3:25469815..25469866,+!p3@RARB!0.57!2.69!RARB;;chr5:88180342..88180365,-!p10@MEF2C!0.57!2.69!MEF2C;;chr7:139741594..139741615,-!p5@PARP12!0.57!2.69!PARP12;;chr1:158979686..158979745,+!p1@IFI16!0.56!108.90!IFI16;;chr1:205601093..205601158,-!p1@ELK4!0.56!29.19!ELK4;;chr17:41277372..41277418,-!p1@BRCA1!0.56!11.45!BRCA1;;chr3:114343826..114343869,-!p4@ZBTB20!0.56!6.06!ZBTB20;;chr3:33482052..33482116,-!p2@UBP1!0.56!4.49!UBP1;;chr12:66218378..66218401,+!p6@HMGA2!0.56!4.49!HMGA2;;chr17:41622925..41622976,-!p3@ETV4!0.56!4.27!ETV4;;chr19:58341656..58341694,+!p5@ZNF587!0.56!3.37!ZNF587;;chr1:61548225..61548299,+!p1@NFIA!0.55!42.44!NFIA;;chr12:3068544..3068597,+!p1@TEAD4!0.55!19.08!TEAD4;;chr20:31350184..31350200,+!p1@DNMT3B!0.55!6.06!DNMT3B;;chr15:96876966..96877017,+!p12@NR2F2!0.55!4.04!NR2F2;;chr2:85360499..85360598,+!p1@TCF7L1!0.54!17.29!TCF7L1;;chr12:80084167..80084197,-!p5@PAWR!0.54!6.74!PAWR;;chr15:96873861..96873872,+!p9@NR2F2!0.54!5.84!NR2F2;;chr19:13213662..13213686,-!p1@LYL1!0.54!4.04!LYL1;;chr12:66218443..66218461,+!p8@HMGA2!0.54!3.37!HMGA2;;chr17:41622834..41622883,-!p6@ETV4!0.54!3.14!ETV4;;chr6:85473156..85473210,-!p2@TBX18!0.54!3.14!TBX18;;chr17:46675420..46675465,-!p3@HOXB6!0.54!2.92!HOXB6;;chr19:13213555..13213568,-!p5@LYL1!0.54!2.47!LYL1;;chr10:45496320..45496336,+!p3@ZNF22!0.54!2.47!ZNF22;;chr12:66218904..66218913,+!p11@HMGA2!0.54!2.47!HMGA2;;chr13:79177703..79177729,-!p2@POU4F1!0.54!2.47!POU4F1;;chr1:47697881..47697910,-!p4@TAL1!0.54!2.47!TAL1;;chr3:169381183..169381205,-!p4@MECOM!0.54!2.47!MECOM;;chr9:14083467..14083483,-!p4@NFIB!0.53!6.96!NFIB;;chr1:61547781..61547809,+!p5@NFIA!0.53!5.61!NFIA;;chr1:61547811..61547837,+!p7@NFIA!0.53!3.82!NFIA;;chr10:31288398..31288455,-!p2@ZNF438!0.53!2.92!ZNF438;;chr10:31607702..31607755,+!p3@ZEB1!0.53!2.92!ZEB1;;chr2:46524897..46524911,+!p2@EPAS1!0.52!7.86!EPAS1;;chr1:8763296..8763339,-!p9@RERE!0.52!6.74!RERE;;chr15:96874145..96874166,+!p7@NR2F2!0.52!5.16!NR2F2;;chr19:53496806..53496848,-!p2@ZNF702P!0.52!3.82!ZNF702P;;chr4:146403912..146403972,+!p5@SMAD1!0.52!3.14!SMAD1;;chr3:71114066..71114114,-!p1@FOXP1!0.51!59.50!FOXP1;;chr12:27485785..27485816,+!p1@ARNTL2!0.51!20.21!ARNTL2;;chr18:77160282..77160343,+!p2@NFATC1!0.51!17.74!NFATC1;;chr7:86781916..86781963,+!p2@DMTF1!0.51!12.35!DMTF1;;chr1:158979680..158979683,+!p9@IFI16!0.51!3.37!IFI16;;chr7:27195867..27195893,-!p3@HOXA7!0.51!2.25!HOXA7;;chr7:27196217..27196246,-!p2@HOXA7!0.51!2.25!HOXA7;;chr8:93115508..93115552,-!p6@RUNX1T1!0.51!2.25!RUNX1T1;;chr17:46659728..46659749,-!p3@HOXB3!0.51!2.25!HOXB3;;chr9:14083091..14083096,-!p12@NFIB!0.51!2.25!NFIB;;chr6:31126291..31126399,+!p1@TCF19!0.50!26.72!TCF19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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000071;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000076;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000115;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000213;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002078;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002139;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002543;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002618;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000487;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001638;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001981;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0006914;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007798;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0010260
|ffid_belonging_in_development=CL:0002546,CL:0000222
|fonse_cell_line=
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|fonse_cell_line_closure=
Line 37: Line 44:
|fonse_treatment_closure=
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|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Umbilical%2520vein%252c%2520donor2.CNhs11967.11324-117E1.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Umbilical%2520vein%252c%2520donor2.CNhs11967.11324-117E1.hg38.nobarcode.ctss.bed.gz
|id=FF:11324-117E1
|id=FF:11324-117E1
|is_a=EFO:0002091;;FF:0000247
|is_a=EFO:0002091;;FF:0000247
|is_obsolete=
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|library_id=CNhs11967
|library_id_phase_based=2:CNhs11967
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11324
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10007.AGTCAA.11324
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|name=Endothelial Cells - Umbilical vein, donor2
|name=Endothelial Cells - Umbilical vein, donor2
|namespace=FANTOM5
|namespace=FANTOM5
Line 45: Line 65:
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|rna_box=117
|rna_box=117
|rna_catalog_number=SC8005
|rna_catalog_number=SC8005
Line 57: Line 80:
|rna_rin=
|rna_rin=
|rna_sample_type=total RNA
|rna_sample_type=total RNA
|rna_tube_id=117E1
|rna_tube_id=1.17E+03
|rna_weight_ug=10
|rna_weight_ug=10
|rnaseq_library_id=SRhi10007.AGTCAA
|sample_age=fetal
|sample_age=fetal
|sample_category=primary cells
|sample_cell_catalog=N/A
|sample_cell_catalog=N/A
|sample_cell_line=
|sample_cell_line=
Line 81: Line 106:
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|top_motifs=IKZF2:1.62121988416;SOX{8,9,10}:1.52830448088;PAX1,9:1.52790598131;RXR{A,B,G}:1.52271014104;HBP1_HMGB_SSRP1_UBTF:1.22325440336;NFATC1..3:1.15441467686;PAX6:1.13497565038;ALX1:1.06767055063;ADNP_IRX_SIX_ZHX:1.0630229906;TFDP1:0.990712677111;ZFP161:0.958735492842;TLX1..3_NFIC{dimer}:0.880721483902;SOX5:0.844967200216;TFAP2{A,C}:0.831591933974;NFY{A,B,C}:0.819629594922;E2F1..5:0.812414490301;GATA6:0.784549822323;AR:0.743297687011;SOX2:0.712984271448;POU3F1..4:0.705758784046;ELF1,2,4:0.640430526981;SOX17:0.606052313999;PBX1:0.600324350256;ZNF143:0.585266203846;RBPJ:0.578389315958;HIC1:0.56864225327;ONECUT1,2:0.550274580474;XCPE1{core}:0.528526558049;TFAP4:0.522180265916;MYB:0.51285478711;CDC5L:0.512108648923;GFI1:0.501720769071;NRF1:0.501261606351;ETS1,2:0.49127812438;PITX1..3:0.475277642233;GFI1B:0.444817667453;FOXD3:0.429483515292;STAT1,3:0.416191446909;EGR1..3:0.409534719974;SP1:0.406777601905;FOXQ1:0.399598526326;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.391832813418;POU1F1:0.385224403494;YY1:0.357272791332;SPIB:0.33976109295;IKZF1:0.336166218769;FOX{I1,J2}:0.330613860889;TFAP2B:0.317617678398;RORA:0.314519298865;LEF1_TCF7_TCF7L1,2:0.276795356117;TEAD1:0.27029761916;HOXA9_MEIS1:0.259787206104;CUX2:0.249619540143;GATA4:0.24280266312;MED-1{core}:0.241179308322;FOXA2:0.237383248458;ARID5B:0.228656675536;STAT5{A,B}:0.219505991751;NANOG:0.200165002554;EN1,2:0.196698910232;PAX8:0.176553953615;NR5A1,2:0.1722394811;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.15544338056;ATF6:0.143158989977;MZF1:0.130495559283;HNF4A_NR2F1,2:0.118500784074;MTE{core}:0.0954309746299;NANOG{mouse}:0.0943741310096;PRDM1:0.0863130183431;BREu{core}:0.0819724535387;GTF2I:0.077178774411;MYOD1:0.0727826669551;ZNF423:0.0701031535059;GZF1:0.0635391846707;FOXP1:0.0587178189524;HOX{A5,B5}:0.0571464280033;NKX2-3_NKX2-5:0.0472248392264;SREBF1,2:0.0395088821645;MAZ:0.0328676770629;SPI1:0.0263465397913;REST:0.0218462597034;FOXN1:0.00456351966674;POU5F1:-0.00912624617478;LHX3,4:-0.0118241257972;HES1:-0.0164431135265;PATZ1:-0.0241707948346;ZNF238:-0.0246591514321;PRRX1,2:-0.0309950487827;BACH2:-0.0321950380793;TEF:-0.0460266588816;TGIF1:-0.0506935692788;EBF1:-0.0527096915067;DMAP1_NCOR{1,2}_SMARC:-0.0598222316545;ZBTB6:-0.0641239041718;GTF2A1,2:-0.066489588884;PAX5:-0.0715000950006;TAL1_TCF{3,4,12}:-0.0781011065555;PAX3,7:-0.0796337418953;ZNF148:-0.0812661495822;NFE2:-0.081400175245;TP53:-0.0980664688448;T:-0.105781012683;bHLH_family:-0.112659770955;MEF2{A,B,C,D}:-0.121689371868;POU6F1:-0.121897510723;FOS_FOS{B,L1}_JUN{B,D}:-0.127868188891;ZBTB16:-0.141130348918;STAT2,4,6:-0.148494542356;CDX1,2,4:-0.150317688664;CREB1:-0.152503304046;FOSL2:-0.163163923095;FOXO1,3,4:-0.163738217666;NFE2L2:-0.181931960484;EVI1:-0.19096915915;SMAD1..7,9:-0.194731476179;BPTF:-0.20023686057;POU2F1..3:-0.215136536229;ZIC1..3:-0.216280346901;HNF1A:-0.221818183104;IRF1,2:-0.236680423063;HMGA1,2:-0.237936020585;PPARG:-0.246056651233;GCM1,2:-0.262903397564;NR3C1:-0.26846027921;AIRE:-0.269693602457;XBP1:-0.271156141499;PDX1:-0.280196544511;FOX{D1,D2}:-0.286553804923;NHLH1,2:-0.2956823903;AHR_ARNT_ARNT2:-0.305844053245;NFIX:-0.308853313431;LMO2:-0.328430524198;UFEwm:-0.337377410597;CRX:-0.346150018162;HOX{A6,A7,B6,B7}:-0.354533105197;KLF4:-0.359994708538;GLI1..3:-0.372448641905;MYBL2:-0.375794045353;NKX2-2,8:-0.39483032987;NFKB1_REL_RELA:-0.401010836306;PAX2:-0.401184285137;MTF1:-0.408187754555;OCT4_SOX2{dimer}:-0.445431481179;NR1H4:-0.447253134325;SPZ1:-0.448415351264;FOX{F1,F2,J1}:-0.453486369952;RFX1:-0.484591063544;FOXM1:-0.489600821126;IRF7:-0.489976435926;FOXL1:-0.492243079717;ZNF384:-0.504804321153;SRF:-0.518102123214;MYFfamily:-0.521455563236;ATF2:-0.544343437543;HLF:-0.565640145316;SNAI1..3:-0.602304930241;ESRRA:-0.603312011098;PAX4:-0.609809989613;ATF4:-0.627727382831;ELK1,4_GABP{A,B1}:-0.664028499185;RUNX1..3:-0.679563908834;RXRA_VDR{dimer}:-0.682551868057;NKX3-1:-0.682975028241;HAND1,2:-0.691093846949;TOPORS:-0.691826136957;CEBPA,B_DDIT3:-0.69901408669;RREB1:-0.710556257869;DBP:-0.766886459482;NKX3-2:-0.773596022208;HOX{A4,D4}:-0.779739692658;NKX6-1,2:-0.795942736408;TBP:-0.825987970148;ATF5_CREB3:-0.860477162819;ALX4:-0.861534897138;RFX2..5_RFXANK_RFXAP:-0.870628197901;VSX1,2:-0.891942652052;FOXP3:-0.898227883187;ZEB1:-0.908146092826;TBX4,5:-0.916890764359;JUN:-0.93527710696;EP300:-0.973041528494;NFIL3:-0.981775910225;TLX2:-0.985138694406;TFCP2:-1.01299409309;HSF1,2:-1.0205857386;NKX2-1,4:-1.03547262318;NFE2L1:-1.05060566142;ESR1:-1.05710869203;MAFB:-1.11927030891;NR6A1:-1.14376249855;HIF1A:-1.16704845573;HMX1:-1.28966714162
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11324-117E1;search_select_hide=table117:FF:11324-117E1
}}
}}

Latest revision as of 17:52, 4 June 2020

Name:Endothelial Cells - Umbilical vein, donor2
Species:Human (Homo sapiens)
Library ID:CNhs11967
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueumbilical vein
dev stagefetus
sexunknown
agefetal
cell typeblood vessel endothelial cell
cell lineNA
companySciencell/3H
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number2205
catalog numberSC8005
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004959
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11967 CAGE DRX008232 DRR009104
Accession ID Hg19

Library idBAMCTSS
CNhs11967 DRZ000529 DRZ001914
Accession ID Hg38

Library idBAMCTSS
CNhs11967 DRZ011879 DRZ013264
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00004959
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10007.AGTCAA sRNA-Seq DRX037098 DRR041464
Accession ID Hg19

Library idBAMCTSS
SRhi10007.AGTCAA DRZ007106


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.0126
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.409
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen1.023
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.327
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.00346
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.149
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.0824
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.153
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.4
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.37
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.088
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.088
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.161
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11967

Jaspar motifP-value
MA0002.23.71519e-5
MA0003.10.684
MA0004.10.917
MA0006.10.676
MA0007.10.73
MA0009.10.51
MA0014.10.836
MA0017.10.131
MA0018.20.0386
MA0019.10.1
MA0024.14.23748e-5
MA0025.10.0495
MA0027.10.622
MA0028.10.824
MA0029.10.392
MA0030.10.714
MA0031.10.652
MA0035.20.0151
MA0038.10.0116
MA0039.20.716
MA0040.10.396
MA0041.10.00696
MA0042.10.218
MA0043.17.50241e-5
MA0046.10.485
MA0047.20.878
MA0048.10.239
MA0050.10.627
MA0051.10.164
MA0052.10.286
MA0055.10.11
MA0057.10.907
MA0058.10.845
MA0059.10.262
MA0060.11.12488e-9
MA0061.17.19134e-4
MA0062.20.467
MA0065.20.0185
MA0066.10.126
MA0067.10.432
MA0068.10.227
MA0069.10.0344
MA0070.10.635
MA0071.10.996
MA0072.10.655
MA0073.10.87
MA0074.10.96
MA0076.10.296
MA0077.11.05316e-4
MA0078.10.0649
MA0079.20.229
MA0080.20.15
MA0081.10.395
MA0083.10.00449
MA0084.10.0152
MA0087.10.0463
MA0088.10.667
MA0090.10.977
MA0091.10.304
MA0092.10.26
MA0093.10.819
MA0099.20.417
MA0100.10.494
MA0101.10.337
MA0102.20.00143
MA0103.10.00205
MA0104.20.264
MA0105.18.61001e-6
MA0106.10.405
MA0107.10.117
MA0108.20.0994
MA0111.10.79
MA0112.28.03706e-7
MA0113.10.383
MA0114.10.0408
MA0115.10.398
MA0116.17.27104e-4
MA0117.10.386
MA0119.10.58
MA0122.10.306
MA0124.10.274
MA0125.10.843
MA0131.10.526
MA0135.10.979
MA0136.10.493
MA0137.20.949
MA0138.20.548
MA0139.10.634
MA0140.10.207
MA0141.10.485
MA0142.10.684
MA0143.10.346
MA0144.10.869
MA0145.10.181
MA0146.10.25
MA0147.10.314
MA0148.10.582
MA0149.10.0539
MA0150.10.116
MA0152.10.997
MA0153.10.419
MA0154.19.81761e-4
MA0155.10.973
MA0156.10.0911
MA0157.10.329
MA0159.10.0156
MA0160.10.36
MA0162.10.382
MA0163.18.45595e-5
MA0164.10.996
MA0258.12.23928e-4
MA0259.10.404



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11967

Novel motifP-value
10.226
100.171
1000.767
1010.348
1020.771
1030.364
1040.683
1050.587
1060.00656
1070.355
1080.631
1090.106
110.244
1100.879
1110.202
1120.153
1130.0963
1140.115
1150.626
1160.292
1170.563
1180.431
1190.325
120.923
1200.594
1210.421
1220.719
1230.22
1240.0216
1250.238
1260.524
1270.3
1280.299
1290.816
130.435
1300.159
1310.164
1320.929
1330.88
1340.601
1350.624
1360.0958
1370.0729
1380.947
1390.00718
140.465
1400.194
1410.697
1420.0252
1430.0389
1440.716
1450.578
1460.522
1470.926
1480.00168
1490.975
150.175
1500.693
1510.268
1520.868
1530.0106
1540.846
1550.172
1560.229
1570.0605
1580.134
1590.18
160.132
1600.997
1610.0574
1620.621
1630.758
1640.897
1650.33
1660.87
1670.0469
1680.429
1690.16
170.18
180.0171
190.299
20.521
200.418
210.502
220.451
230.0931
240.513
250.355
260.0605
270.254
280.54
290.189
30.141
300.687
310.305
320.00738
330.917
340.424
350.0713
360.792
370.183
380.874
390.898
40.29
400.381
410.901
420.74
430.066
440.119
450.766
460.0443
470.34
480.674
490.0885
50.0864
500.957
510.435
520.302
530.58
540.314
550.434
560.476
570.592
580.0739
590.213
60.153
600.0516
610.654
620.0468
630.31
640.293
650.214
660.238
670.608
680.899
690.775
70.663
705.18598e-4
710.0322
720.64
730.982
740.392
750.366
760.907
770.0547
780.649
790.0733
80.616
800.364
810.0818
820.0489
830.631
840.968
850.0267
860.754
870.653
880.272
890.0415
90.668
900.803
910.672
920.145
930.612
940.00809
950.457
960.411
970.385
980.391
990.392



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11967


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000076 (squamous epithelial cell)
0002139 (endothelial cell of vascular tree)
0000213 (lining cell)
0002078 (meso-epithelial cell)
0000215 (barrier cell)
0000255 (eukaryotic cell)
0000115 (endothelial cell)
0000071 (blood vessel endothelial cell)
0002543 (vein endothelial cell)
0002618 (endothelial cell of umbilical vein)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001638 (vein)
0000483 (epithelium)
0000479 (tissue)
0000055 (vessel)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0000490 (unilaminar epithelium)
0006914 (squamous epithelium)
0000487 (simple squamous epithelium)
0010260 (umbilical blood vessel)
0003920 (venous blood vessel)
0004638 (blood vessel endothelium)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0002049 (vasculature)
0001986 (endothelium)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0004852 (cardiovascular system endothelium)
0002066 (umbilical vein)
0004535 (cardiovascular system)
0004537 (blood vasculature)
0004582 (venous system)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000046 (human endothelial cell sample)
0000001 (sample)
0000052 (human endothelial cell of the vein sample)
0000247 (human endothelial cell of umbilical vein sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0002546 (embryonic blood vessel endothelial progenitor cell)
CL:0000222 (mesodermal cell)

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