FF:11880-125C8: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00005081 | |||
|accession_numbers=CAGE;DRX008140;DRR009012;DRZ000437;DRZ001822;DRZ011787;DRZ013172 | |||
|ancestors_in_anatomy_facet= | |ancestors_in_anatomy_facet= | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000325,CL:0000473,CL:0000234,CL:0000738,CL:0002087,CL:0000255,CL:0000576,CL:0000860,CL:0002057 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000325,CL:0000473,CL:0000234,CL:0000738,CL:0002087,CL:0000255,CL:0000576,CL:0000860,CL:0002057 | ||
Line 7: | Line 9: | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr2:68592406..68592424,+!p1@PLEK!4.01!10134.68!PLEK;;chr16:85932760..85932775,+!p1@IRF8!3.08!1210.32!IRF8;;chr10:64576105..64576133,-!p1@EGR2!2.70!993.70!EGR2;;chr11:47400078..47400106,-!p1@SPI1!2.68!481.48!SPI1;;chr10:35484053..35484076,+!p1@CREM!2.64!1043.83!CREM;;chr7:115670804..115670825,-!p1@TFEC!2.60!400.13!TFEC;;chr12:54778471..54778528,-!p1@ZNF385A!2.29!194.39!ZNF385A;;chr11:64764435..64764449,-!p1@BATF2!2.24!234.83!BATF2;;chr6:106534192..106534224,+!p1@PRDM1!2.16!385.23!PRDM1;;chr2:68592394..68592405,+!p2@PLEK!2.12!131.25!PLEK;;chr11:47400062..47400077,-!p2@SPI1!2.07!115.17!SPI1;;chr6:36355431..36355466,-!p1@ETV7!2.04!107.84!ETV7;;chr11:47399947..47399961,-!p3@SPI1!2.02!104.05!SPI1;;chr20:39317868..39317884,-!p1@MAFB!2.01!1135.82!MAFB;;chr16:31885093..31885165,+!p1@ZNF267!2.00!1409.43!ZNF267;;chr1:158985493..158985535,+!p4@IFI16!1.99!145.20!IFI16;;chr5:131826457..131826514,-!p1@IRF1!1.97!3380.28!IRF1;;chr11:65430554..65430579,-!p3@RELA!1.97!228.91!RELA;;chr21:36260295..36260310,-!p3@RUNX1!1.96!140.94!RUNX1;;chr17:45810594..45810608,+!p1@TBX21!1.95!87.50!TBX21;;chr10:35484090..35484104,+!p6@CREM!1.94!86.55!CREM;;chr19:45971246..45971265,+!p1@FOSB!1.89!1338.49!FOSB;;chr21:30671690..30671762,+!p2@BACH1!1.89!247.83!BACH1;;chr2:70142232..70142251,+!p1@MXD1!1.85!370.80!MXD1;;chr10:31288398..31288455,-!p2@ZNF438!1.85!81.35!ZNF438;;chr2:231084639..231084654,-!p2@SP110!1.84!109.25!SP110;;chr6:106534230..106534254,+!p2@PRDM1!1.83!160.33!PRDM1;;chr14:35872453..35872485,-!p2@NFKBIA!1.82!154.19!NFKBIA;;chr11:65430535..65430549,-!p4@RELA!1.81!73.55!RELA;;chr14:75988831..75988847,+!p2@BATF!1.80!62.67!BATF;;chr1:212782094..212782109,+!p1@ATF3!1.79!1561.49!ATF3;;chr11:615942..615957,-!p1@IRF7!1.79!540.36!IRF7;;chr10:64018918..64018936,+!p2@ZNF365!1.77!58.41!ZNF365;;chr12:72056800..72056834,+!p1@THAP2!1.76!74.49!THAP2;;chr21:34442439..34442455,+!p1@OLIG1!1.75!55.34!OLIG1;;chr2:145277640..145277771,-!p1@ZEB2!1.74!682.96!ZEB2;;chr10:51572408..51572454,+!p3@NCOA4!1.74!297.97!NCOA4;;chr1:158979872..158979898,+!p3@IFI16!1.73!155.61!IFI16;;chrX:153305787..153305807,-!p3@MECP2!1.73!53.21!MECP2;;chr7:128577972..128578047,+!p1@IRF5!1.71!78.51!IRF5;;chr22:38597987..38598021,+!p2@MAFF!1.70!284.25!MAFF;;chr11:47400032..47400043,-!p5@SPI1!1.69!48.01!SPI1;;chr14:75988771..75988826,+!p1@BATF!1.68!61.49!BATF;;chr11:47399996..47400014,-!p4@SPI1!1.68!47.30!SPI1;;chr1:25256756..25256774,-!p1@RUNX3!1.67!84.66!RUNX3;;chr2:97202480..97202499,+!p1@ARID5A!1.66!432.53!ARID5A;;chr21:30671235..30671253,+!p1@BACH1!1.65!528.77!BACH1;;chr10:31288370..31288393,-!p3@ZNF438!1.65!43.75!ZNF438;;chr14:35873947..35873965,-!p1@NFKBIA!1.63!2502.69!NFKBIA;;chr8:22550982..22550999,-!p1@EGR3!1.63!114.46!EGR3;;chr10:35484804..35484902,+!p2@CREM!1.62!149.46!CREM;;chr6:126240380..126240430,+!p2@NCOA7!1.62!102.40!NCOA7;;chr21:36421535..36421610,-!p2@RUNX1!1.61!137.40!RUNX1;;chr2:231090471..231090504,+!p2@SP140!1.60!38.78!SP140;;chr3:12329397..12329433,+!p2@PPARG!1.58!82.06!PPARG;;chr12:72056749..72056767,+!p6@THAP2!1.58!40.67!THAP2;;chr12:72056773..72056796,+!p3@THAP2!1.56!45.17!THAP2;;chr19:50432132..50432217,+!p2@ATF5!1.56!41.62!ATF5;;chr3:12330560..12330579,+!p1@PPARG!1.56!40.67!PPARG;;chr7:50344289..50344323,+!p1@IKZF1!1.56!35.24!IKZF1;;chr10:51572339..51572376,+!p4@NCOA4!1.55!75.67!NCOA4;;chr2:145275162..145275202,-!p2@ZEB2!1.54!189.42!ZEB2;;chr19:36391434..36391450,-!p1@NFKBID!1.53!62.67!NFKBID;;chr2:157189180..157189290,-!p1@NR4A2!1.52!159.86!NR4A2;;chr12:54778351..54778378,-!p6@ZNF385A!1.52!32.40!ZNF385A;;chr19:33793430..33793447,-!p1@CEBPA!1.50!123.68!CEBPA;;chr13:41593425..41593480,-!p1@ELF1!1.47!173.34!ELF1;;chr6:391743..391759,+!p1@IRF4!1.47!28.85!IRF4;;chr6:126240442..126240459,+!p4@NCOA7!1.46!35.47!NCOA7;;chr11:47400045..47400060,-!p6@SPI1!1.46!27.90!SPI1;;chr4:103422499..103422632,+!p1@NFKB1!1.45!546.51!NFKB1;;chr4:106068026..106068084,+!p1@TET2!1.44!229.86!TET2;;chr11:615570..615721,-!p2@IRF7!1.44!51.08!IRF7;;chr6:144385698..144385742,-!p2@PLAGL1!1.44!31.93!PLAGL1;;chr3:39195037..39195069,-!p2@CSRNP1!1.42!151.35!CSRNP1;;chr6:126240463..126240489,+!p6@NCOA7!1.42!28.61!NCOA7;;chr10:104155480..104155534,+!p2@NFKB2!1.41!153.48!NFKB2;;chr12:11802753..11802834,+!p2@ETV6!1.41!118.71!ETV6;;chr11:47399920..47399931,-!p7@SPI1!1.41!24.83!SPI1;;chr19:45251395..45251432,+!p8@BCL3!1.41!24.59!BCL3;;chr9:110252035..110252057,-!p1@KLF4!1.39!359.93!KLF4;;chrX:129244454..129244488,-!p1@ELF4!1.39!165.30!ELF4;;chr18:3449720..3449749,+!p2@TGIF1!1.39!49.19!TGIF1;;chr12:48298765..48298783,-!p2@VDR!1.39!48.01!VDR;;chr2:61108695..61108753,+!p1@REL!1.38!152.29!REL;;chr3:187463179..187463201,-!p2@BCL6!1.38!92.46!BCL6;;chr4:83822199..83822239,+!p2@THAP9!1.38!27.20!THAP9;;chr17:38497662..38497713,+!p4@RARA!1.38!26.72!RARA;;chr6:106535598..106535637,+!p7@PRDM1!1.37!22.70!PRDM1;;chr2:191885737..191885750,-!p4@STAT1!1.37!22.23!STAT1;;chr4:185395590..185395627,-!p3@IRF2!1.36!26.96!IRF2;;chr1:37940170..37940190,+!p1@ZC3H12A!1.35!252.80!ZC3H12A;;chr20:48599506..48599526,+!p1@SNAI1!1.35!132.43!SNAI1;;chr14:35872494..35872511,-!p5@NFKBIA!1.34!27.67!NFKBIA;;chr14:35872962..35873025,-!p3@NFKBIA!1.33!50.61!NFKBIA;;chr22:38598057..38598071,+!p3@MAFF!1.33!46.59!MAFF;;chr1:221052733..221052749,+!p2@HLX!1.33!26.25!HLX;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.33!20.57!ZBED1;;chr21:30672433..30672464,+!p6@BACH1!1.33!20.34!BACH1;;chr9:129567282..129567353,+!p1@ZBTB43!1.32!250.91!ZBTB43;;chr2:70314240..70314256,+!p4@PCBP1!1.32!40.20!PCBP1;;chr4:185395633..185395651,-!p2@IRF2!1.32!31.69!IRF2;;chr2:145271342..145271377,-!p5@ZEB2!1.32!19.86!ZEB2;;chr20:48807351..48807384,+!p1@CEBPB!1.31!1892.80!CEBPB;;chr5:142782823..142782854,-!p3@NR3C1!1.31!27.43!NR3C1;;chr22:38598086..38598105,+!p1@MAFF!1.30!195.33!MAFF;;chr21:36260343..36260402,-!p6@RUNX1!1.30!30.27!RUNX1;;chr21:34398234..34398250,+!p1@OLIG2!1.30!19.16!OLIG2;;chr3:101568349..101568365,+!p1@NFKBIZ!1.29!923.94!NFKBIZ;;chr10:104154246..104154347,+!p3@NFKB2!1.29!110.20!NFKB2;;chr6:15246200..15246214,+!p2@JARID2!1.29!50.84!JARID2;;chr10:35416142..35416169,+!p3@CREM!1.29!48.24!CREM;;chr8:116681123..116681143,-!p4@TRPS1!1.29!35.47!TRPS1;;chr14:75745523..75745537,+!p1@FOS!1.28!2108.24!FOS;;chr2:231090433..231090469,+!p1@SP140!1.27!17.50!SP140;;chr12:52445218..52445237,+!p1@NR4A1!1.26!211.65!NR4A1;;chr1:158979792..158979814,+!p2@IFI16!1.26!159.39!IFI16;;chr2:231280954..231280965,+!p2@SP100!1.26!31.69!SP100;;chr9:102584159..102584174,+!p2@NR4A3!1.26!30.51!NR4A3;;chr3:39195139..39195150,-!p3@CSRNP1!1.26!21.76!CSRNP1;;chr13:41635029..41635044,-!p4@ELF1!1.25!35.71!ELF1;;chr2:192015701..192015743,-!p1@STAT4!1.25!22.70!STAT4;;chr1:221052776..221052799,+!p1@HLX!1.24!29.09!HLX;;chr7:150946376..150946389,-!p6@SMARCD3!1.24!16.32!SMARCD3;;chr2:231084659..231084721,-!p1@SP110!1.23!360.40!SP110;;chr3:170075436..170075520,+!p1@SKIL!1.23!336.04!SKIL;;chr3:101546827..101546847,+!p2@NFKBIZ!1.23!22.47!NFKBIZ;;chrX:129244430..129244442,-!p5@ELF4!1.23!16.08!ELF4;;chr3:187454281..187454300,-!p8@BCL6!1.23!15.84!BCL6;;chr7:17338266..17338282,+!p1@AHR!1.22!165.77!AHR;;chr6:44233252..44233296,-!p1@NFKBIE!1.22!152.06!NFKBIE;;chr16:3285119..3285133,-!p2@ZNF200!1.22!30.98!ZNF200;;chr16:89787973..89788001,+!p3@ZNF276!1.22!29.56!ZNF276;;chr1:158979851..158979865,+!p5@IFI16!1.21!33.82!IFI16;;chr8:116681150..116681164,-!p5@TRPS1!1.21!29.56!TRPS1;;chr2:145277882..145277967,-!p3@ZEB2!1.21!26.49!ZEB2;;chr18:3449618..3449634,+!p13@TGIF1!1.21!18.68!TGIF1;;chr3:107318229..107318239,+!p17@BBX!1.21!15.13!BBX;;chr16:79634624..79634642,-!p1@MAF!1.20!57.94!MAF;;chr9:102584128..102584144,+!p3@NR4A3!1.20!27.90!NR4A3;;chr6:12012249..12012266,+!p5@HIVEP1!1.20!25.78!HIVEP1;;chr10:104155659..104155676,+!p4@NFKB2!1.20!18.68!NFKB2;;chr21:36260325..36260341,-!p14@RUNX1!1.20!14.90!RUNX1;;chr19:45252008..45252024,+!p2@BCL3!1.19!48.01!BCL3;;chr19:45250948..45250998,+!p3@BCL3!1.19!36.42!BCL3;;chr1:161736038..161736056,+!p4@ATF6!1.19!33.82!ATF6;;chr2:231084820..231084836,-!p5@SP110!1.18!16.32!SP110;;chr8:53373491..53373506,-!p4@ST18!1.18!14.19!ST18;;chr7:28725740..28725778,+!p1@CREB5!1.17!122.97!CREB5;;chr3:126191157..126191171,-!p4@ZXDC!1.17!13.95!ZXDC;;chr6:12012170..12012245,+!p1@HIVEP1!1.16!66.45!HIVEP1;;chr18:3448455..3448480,+!p5@TGIF1!1.16!24.83!TGIF1;;chr19:19496539..19496576,+!p8@GATAD2A!1.16!23.65!GATAD2A;;chr18:3449586..3449617,+!p8@TGIF1!1.16!21.28!TGIF1;;chr1:38325227..38325246,-!p2@MTF1!1.16!18.21!MTF1;;chr1:25256439..25256476,-!p3@RUNX3!1.16!13.48!RUNX3;;chr12:56415246..56415286,+!p2@IKZF4!1.16!13.48!IKZF4;;chr8:116681194..116681214,-!p1@TRPS1!1.15!121.08!TRPS1;;chr10:3827371..3827386,-!p2@KLF6!1.15!109.25!KLF6;;chr8:72756063..72756125,-!p1@MSC!1.15!26.25!MSC;;chr9:110250697..110250738,-!p2@KLF4!1.15!15.37!KLF4;;chr10:31288329..31288353,-!p7@ZNF438!1.15!13.24!ZNF438;;chr14:24630465..24630531,+!p1@IRF9!1.13!474.62!IRF9;;chr2:28618532..28618610,+!p4@FOSL2!1.13!21.52!FOSL2;;chr8:81397846..81397860,+!p3@ZBTB10!1.13!15.84!ZBTB10;;chr7:115670792..115670797,-!p2@TFEC!1.13!12.53!TFEC;;chr4:103423079..103423112,+!p4@NFKB1!1.13!12.53!NFKB1;;chrX:153305741..153305753,-!p4@MECP2!1.13!12.53!MECP2;;chr16:79634595..79634620,-!p2@MAF!1.12!22.47!MAF;;chr20:48807615..48807644,+!p6@CEBPB!1.12!20.10!CEBPB;;chr2:145275228..145275241,-!p11@ZEB2!1.12!14.66!ZEB2;;chr1:158979922..158979933,+!p13@IFI16!1.11!11.82!IFI16;;chr12:48298785..48298828,-!p1@VDR!1.10!62.19!VDR;;chr18:3449695..3449712,+!p9@TGIF1!1.10!17.97!TGIF1;;chr1:158985723..158985746,+!p20@IFI16!1.10!11.59!IFI16;;chr19:12902289..12902307,+!p1@JUNB!1.09!2573.64!JUNB;;chr21:36260980..36261011,-!p1@RUNX1!1.09!327.53!RUNX1;;chr3:39195075..39195088,-!p1@CSRNP1!1.09!71.42!CSRNP1;;chr21:40177892..40177903,+!p2@ETS2!1.09!45.88!ETS2;;chr14:35872926..35872951,-!p4@NFKBIA!1.09!16.08!NFKBIA;;chr11:65430038..65430053,-!p12@RELA!1.09!11.35!RELA;;chr12:57914700..57914737,+!p7@MBD6!1.09!11.35!MBD6;;chr2:238600998..238601013,+!p5@LRRFIP1!1.09!11.35!LRRFIP1;;chr4:106066712..106066728,+!p8@TET2!1.09!11.35!TET2;;chr1:221054922..221054933,+!p16@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| |expression_enrichment_score=chr2:68592406..68592424,+!p1@PLEK!4.01!10134.68!PLEK;;chr16:85932760..85932775,+!p1@IRF8!3.08!1210.32!IRF8;;chr10:64576105..64576133,-!p1@EGR2!2.70!993.70!EGR2;;chr11:47400078..47400106,-!p1@SPI1!2.68!481.48!SPI1;;chr10:35484053..35484076,+!p1@CREM!2.64!1043.83!CREM;;chr7:115670804..115670825,-!p1@TFEC!2.60!400.13!TFEC;;chr12:54778471..54778528,-!p1@ZNF385A!2.29!194.39!ZNF385A;;chr11:64764435..64764449,-!p1@BATF2!2.24!234.83!BATF2;;chr6:106534192..106534224,+!p1@PRDM1!2.16!385.23!PRDM1;;chr2:68592394..68592405,+!p2@PLEK!2.12!131.25!PLEK;;chr11:47400062..47400077,-!p2@SPI1!2.07!115.17!SPI1;;chr6:36355431..36355466,-!p1@ETV7!2.04!107.84!ETV7;;chr11:47399947..47399961,-!p3@SPI1!2.02!104.05!SPI1;;chr20:39317868..39317884,-!p1@MAFB!2.01!1135.82!MAFB;;chr16:31885093..31885165,+!p1@ZNF267!2.00!1409.43!ZNF267;;chr1:158985493..158985535,+!p4@IFI16!1.99!145.20!IFI16;;chr5:131826457..131826514,-!p1@IRF1!1.97!3380.28!IRF1;;chr11:65430554..65430579,-!p3@RELA!1.97!228.91!RELA;;chr21:36260295..36260310,-!p3@RUNX1!1.96!140.94!RUNX1;;chr17:45810594..45810608,+!p1@TBX21!1.95!87.50!TBX21;;chr10:35484090..35484104,+!p6@CREM!1.94!86.55!CREM;;chr19:45971246..45971265,+!p1@FOSB!1.89!1338.49!FOSB;;chr21:30671690..30671762,+!p2@BACH1!1.89!247.83!BACH1;;chr2:70142232..70142251,+!p1@MXD1!1.85!370.80!MXD1;;chr10:31288398..31288455,-!p2@ZNF438!1.85!81.35!ZNF438;;chr2:231084639..231084654,-!p2@SP110!1.84!109.25!SP110;;chr6:106534230..106534254,+!p2@PRDM1!1.83!160.33!PRDM1;;chr14:35872453..35872485,-!p2@NFKBIA!1.82!154.19!NFKBIA;;chr11:65430535..65430549,-!p4@RELA!1.81!73.55!RELA;;chr14:75988831..75988847,+!p2@BATF!1.80!62.67!BATF;;chr1:212782094..212782109,+!p1@ATF3!1.79!1561.49!ATF3;;chr11:615942..615957,-!p1@IRF7!1.79!540.36!IRF7;;chr10:64018918..64018936,+!p2@ZNF365!1.77!58.41!ZNF365;;chr12:72056800..72056834,+!p1@THAP2!1.76!74.49!THAP2;;chr21:34442439..34442455,+!p1@OLIG1!1.75!55.34!OLIG1;;chr2:145277640..145277771,-!p1@ZEB2!1.74!682.96!ZEB2;;chr10:51572408..51572454,+!p3@NCOA4!1.74!297.97!NCOA4;;chr1:158979872..158979898,+!p3@IFI16!1.73!155.61!IFI16;;chrX:153305787..153305807,-!p3@MECP2!1.73!53.21!MECP2;;chr7:128577972..128578047,+!p1@IRF5!1.71!78.51!IRF5;;chr22:38597987..38598021,+!p2@MAFF!1.70!284.25!MAFF;;chr11:47400032..47400043,-!p5@SPI1!1.69!48.01!SPI1;;chr14:75988771..75988826,+!p1@BATF!1.68!61.49!BATF;;chr11:47399996..47400014,-!p4@SPI1!1.68!47.30!SPI1;;chr1:25256756..25256774,-!p1@RUNX3!1.67!84.66!RUNX3;;chr2:97202480..97202499,+!p1@ARID5A!1.66!432.53!ARID5A;;chr21:30671235..30671253,+!p1@BACH1!1.65!528.77!BACH1;;chr10:31288370..31288393,-!p3@ZNF438!1.65!43.75!ZNF438;;chr14:35873947..35873965,-!p1@NFKBIA!1.63!2502.69!NFKBIA;;chr8:22550982..22550999,-!p1@EGR3!1.63!114.46!EGR3;;chr10:35484804..35484902,+!p2@CREM!1.62!149.46!CREM;;chr6:126240380..126240430,+!p2@NCOA7!1.62!102.40!NCOA7;;chr21:36421535..36421610,-!p2@RUNX1!1.61!137.40!RUNX1;;chr2:231090471..231090504,+!p2@SP140!1.60!38.78!SP140;;chr3:12329397..12329433,+!p2@PPARG!1.58!82.06!PPARG;;chr12:72056749..72056767,+!p6@THAP2!1.58!40.67!THAP2;;chr12:72056773..72056796,+!p3@THAP2!1.56!45.17!THAP2;;chr19:50432132..50432217,+!p2@ATF5!1.56!41.62!ATF5;;chr3:12330560..12330579,+!p1@PPARG!1.56!40.67!PPARG;;chr7:50344289..50344323,+!p1@IKZF1!1.56!35.24!IKZF1;;chr10:51572339..51572376,+!p4@NCOA4!1.55!75.67!NCOA4;;chr2:145275162..145275202,-!p2@ZEB2!1.54!189.42!ZEB2;;chr19:36391434..36391450,-!p1@NFKBID!1.53!62.67!NFKBID;;chr2:157189180..157189290,-!p1@NR4A2!1.52!159.86!NR4A2;;chr12:54778351..54778378,-!p6@ZNF385A!1.52!32.40!ZNF385A;;chr19:33793430..33793447,-!p1@CEBPA!1.50!123.68!CEBPA;;chr13:41593425..41593480,-!p1@ELF1!1.47!173.34!ELF1;;chr6:391743..391759,+!p1@IRF4!1.47!28.85!IRF4;;chr6:126240442..126240459,+!p4@NCOA7!1.46!35.47!NCOA7;;chr11:47400045..47400060,-!p6@SPI1!1.46!27.90!SPI1;;chr4:103422499..103422632,+!p1@NFKB1!1.45!546.51!NFKB1;;chr4:106068026..106068084,+!p1@TET2!1.44!229.86!TET2;;chr11:615570..615721,-!p2@IRF7!1.44!51.08!IRF7;;chr6:144385698..144385742,-!p2@PLAGL1!1.44!31.93!PLAGL1;;chr3:39195037..39195069,-!p2@CSRNP1!1.42!151.35!CSRNP1;;chr6:126240463..126240489,+!p6@NCOA7!1.42!28.61!NCOA7;;chr10:104155480..104155534,+!p2@NFKB2!1.41!153.48!NFKB2;;chr12:11802753..11802834,+!p2@ETV6!1.41!118.71!ETV6;;chr11:47399920..47399931,-!p7@SPI1!1.41!24.83!SPI1;;chr19:45251395..45251432,+!p8@BCL3!1.41!24.59!BCL3;;chr9:110252035..110252057,-!p1@KLF4!1.39!359.93!KLF4;;chrX:129244454..129244488,-!p1@ELF4!1.39!165.30!ELF4;;chr18:3449720..3449749,+!p2@TGIF1!1.39!49.19!TGIF1;;chr12:48298765..48298783,-!p2@VDR!1.39!48.01!VDR;;chr2:61108695..61108753,+!p1@REL!1.38!152.29!REL;;chr3:187463179..187463201,-!p2@BCL6!1.38!92.46!BCL6;;chr4:83822199..83822239,+!p2@THAP9!1.38!27.20!THAP9;;chr17:38497662..38497713,+!p4@RARA!1.38!26.72!RARA;;chr6:106535598..106535637,+!p7@PRDM1!1.37!22.70!PRDM1;;chr2:191885737..191885750,-!p4@STAT1!1.37!22.23!STAT1;;chr4:185395590..185395627,-!p3@IRF2!1.36!26.96!IRF2;;chr1:37940170..37940190,+!p1@ZC3H12A!1.35!252.80!ZC3H12A;;chr20:48599506..48599526,+!p1@SNAI1!1.35!132.43!SNAI1;;chr14:35872494..35872511,-!p5@NFKBIA!1.34!27.67!NFKBIA;;chr14:35872962..35873025,-!p3@NFKBIA!1.33!50.61!NFKBIA;;chr22:38598057..38598071,+!p3@MAFF!1.33!46.59!MAFF;;chr1:221052733..221052749,+!p2@HLX!1.33!26.25!HLX;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.33!20.57!ZBED1;;chr21:30672433..30672464,+!p6@BACH1!1.33!20.34!BACH1;;chr9:129567282..129567353,+!p1@ZBTB43!1.32!250.91!ZBTB43;;chr2:70314240..70314256,+!p4@PCBP1!1.32!40.20!PCBP1;;chr4:185395633..185395651,-!p2@IRF2!1.32!31.69!IRF2;;chr2:145271342..145271377,-!p5@ZEB2!1.32!19.86!ZEB2;;chr20:48807351..48807384,+!p1@CEBPB!1.31!1892.80!CEBPB;;chr5:142782823..142782854,-!p3@NR3C1!1.31!27.43!NR3C1;;chr22:38598086..38598105,+!p1@MAFF!1.30!195.33!MAFF;;chr21:36260343..36260402,-!p6@RUNX1!1.30!30.27!RUNX1;;chr21:34398234..34398250,+!p1@OLIG2!1.30!19.16!OLIG2;;chr3:101568349..101568365,+!p1@NFKBIZ!1.29!923.94!NFKBIZ;;chr10:104154246..104154347,+!p3@NFKB2!1.29!110.20!NFKB2;;chr6:15246200..15246214,+!p2@JARID2!1.29!50.84!JARID2;;chr10:35416142..35416169,+!p3@CREM!1.29!48.24!CREM;;chr8:116681123..116681143,-!p4@TRPS1!1.29!35.47!TRPS1;;chr14:75745523..75745537,+!p1@FOS!1.28!2108.24!FOS;;chr2:231090433..231090469,+!p1@SP140!1.27!17.50!SP140;;chr12:52445218..52445237,+!p1@NR4A1!1.26!211.65!NR4A1;;chr1:158979792..158979814,+!p2@IFI16!1.26!159.39!IFI16;;chr2:231280954..231280965,+!p2@SP100!1.26!31.69!SP100;;chr9:102584159..102584174,+!p2@NR4A3!1.26!30.51!NR4A3;;chr3:39195139..39195150,-!p3@CSRNP1!1.26!21.76!CSRNP1;;chr13:41635029..41635044,-!p4@ELF1!1.25!35.71!ELF1;;chr2:192015701..192015743,-!p1@STAT4!1.25!22.70!STAT4;;chr1:221052776..221052799,+!p1@HLX!1.24!29.09!HLX;;chr7:150946376..150946389,-!p6@SMARCD3!1.24!16.32!SMARCD3;;chr2:231084659..231084721,-!p1@SP110!1.23!360.40!SP110;;chr3:170075436..170075520,+!p1@SKIL!1.23!336.04!SKIL;;chr3:101546827..101546847,+!p2@NFKBIZ!1.23!22.47!NFKBIZ;;chrX:129244430..129244442,-!p5@ELF4!1.23!16.08!ELF4;;chr3:187454281..187454300,-!p8@BCL6!1.23!15.84!BCL6;;chr7:17338266..17338282,+!p1@AHR!1.22!165.77!AHR;;chr6:44233252..44233296,-!p1@NFKBIE!1.22!152.06!NFKBIE;;chr16:3285119..3285133,-!p2@ZNF200!1.22!30.98!ZNF200;;chr16:89787973..89788001,+!p3@ZNF276!1.22!29.56!ZNF276;;chr1:158979851..158979865,+!p5@IFI16!1.21!33.82!IFI16;;chr8:116681150..116681164,-!p5@TRPS1!1.21!29.56!TRPS1;;chr2:145277882..145277967,-!p3@ZEB2!1.21!26.49!ZEB2;;chr18:3449618..3449634,+!p13@TGIF1!1.21!18.68!TGIF1;;chr3:107318229..107318239,+!p17@BBX!1.21!15.13!BBX;;chr16:79634624..79634642,-!p1@MAF!1.20!57.94!MAF;;chr9:102584128..102584144,+!p3@NR4A3!1.20!27.90!NR4A3;;chr6:12012249..12012266,+!p5@HIVEP1!1.20!25.78!HIVEP1;;chr10:104155659..104155676,+!p4@NFKB2!1.20!18.68!NFKB2;;chr21:36260325..36260341,-!p14@RUNX1!1.20!14.90!RUNX1;;chr19:45252008..45252024,+!p2@BCL3!1.19!48.01!BCL3;;chr19:45250948..45250998,+!p3@BCL3!1.19!36.42!BCL3;;chr1:161736038..161736056,+!p4@ATF6!1.19!33.82!ATF6;;chr2:231084820..231084836,-!p5@SP110!1.18!16.32!SP110;;chr8:53373491..53373506,-!p4@ST18!1.18!14.19!ST18;;chr7:28725740..28725778,+!p1@CREB5!1.17!122.97!CREB5;;chr3:126191157..126191171,-!p4@ZXDC!1.17!13.95!ZXDC;;chr6:12012170..12012245,+!p1@HIVEP1!1.16!66.45!HIVEP1;;chr18:3448455..3448480,+!p5@TGIF1!1.16!24.83!TGIF1;;chr19:19496539..19496576,+!p8@GATAD2A!1.16!23.65!GATAD2A;;chr18:3449586..3449617,+!p8@TGIF1!1.16!21.28!TGIF1;;chr1:38325227..38325246,-!p2@MTF1!1.16!18.21!MTF1;;chr1:25256439..25256476,-!p3@RUNX3!1.16!13.48!RUNX3;;chr12:56415246..56415286,+!p2@IKZF4!1.16!13.48!IKZF4;;chr8:116681194..116681214,-!p1@TRPS1!1.15!121.08!TRPS1;;chr10:3827371..3827386,-!p2@KLF6!1.15!109.25!KLF6;;chr8:72756063..72756125,-!p1@MSC!1.15!26.25!MSC;;chr9:110250697..110250738,-!p2@KLF4!1.15!15.37!KLF4;;chr10:31288329..31288353,-!p7@ZNF438!1.15!13.24!ZNF438;;chr14:24630465..24630531,+!p1@IRF9!1.13!474.62!IRF9;;chr2:28618532..28618610,+!p4@FOSL2!1.13!21.52!FOSL2;;chr8:81397846..81397860,+!p3@ZBTB10!1.13!15.84!ZBTB10;;chr7:115670792..115670797,-!p2@TFEC!1.13!12.53!TFEC;;chr4:103423079..103423112,+!p4@NFKB1!1.13!12.53!NFKB1;;chrX:153305741..153305753,-!p4@MECP2!1.13!12.53!MECP2;;chr16:79634595..79634620,-!p2@MAF!1.12!22.47!MAF;;chr20:48807615..48807644,+!p6@CEBPB!1.12!20.10!CEBPB;;chr2:145275228..145275241,-!p11@ZEB2!1.12!14.66!ZEB2;;chr1:158979922..158979933,+!p13@IFI16!1.11!11.82!IFI16;;chr12:48298785..48298828,-!p1@VDR!1.10!62.19!VDR;;chr18:3449695..3449712,+!p9@TGIF1!1.10!17.97!TGIF1;;chr1:158985723..158985746,+!p20@IFI16!1.10!11.59!IFI16;;chr19:12902289..12902307,+!p1@JUNB!1.09!2573.64!JUNB;;chr21:36260980..36261011,-!p1@RUNX1!1.09!327.53!RUNX1;;chr3:39195075..39195088,-!p1@CSRNP1!1.09!71.42!CSRNP1;;chr21:40177892..40177903,+!p2@ETS2!1.09!45.88!ETS2;;chr14:35872926..35872951,-!p4@NFKBIA!1.09!16.08!NFKBIA;;chr11:65430038..65430053,-!p12@RELA!1.09!11.35!RELA;;chr12:57914700..57914737,+!p7@MBD6!1.09!11.35!MBD6;;chr2:238600998..238601013,+!p5@LRRFIP1!1.09!11.35!LRRFIP1;;chr4:106066712..106066728,+!p8@TET2!1.09!11.35!TET2;;chr1:221054922..221054933,+!p16@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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000234;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000576;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000763;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000766;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000860;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002193;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002390;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002405 | |||
|ffid_belonging_in_development=CL:0000049,CL:0000134,CL:0002057 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
Line 37: | Line 42: | ||
|fonse_treatment_closure=FF:0000625,FF:0000628,FF:0011103,FF:11880-125C8 | |fonse_treatment_closure=FF:0000625,FF:0000628,FF:0011103,FF:11880-125C8 | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520BCG%252c%2520donor3.CNhs13543.11880-125C8.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520BCG%252c%2520donor3.CNhs13543.11880-125C8.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520BCG%252c%2520donor3.CNhs13543.11880-125C8.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520BCG%252c%2520donor3.CNhs13543.11880-125C8.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520BCG%252c%2520donor3.CNhs13543.11880-125C8.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11880-125C8 | |id=FF:11880-125C8 | ||
|is_a=EFO:0002091;;FF:0011103 | |is_a=EFO:0002091;;FF:0011103 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs13543 | |||
|library_id_phase_based=2:CNhs13543 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11880 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11880 | |||
|name=CD14+ monocytes - treated with BCG, donor3 | |name=CD14+ monocytes - treated with BCG, donor3 | ||
|namespace= | |namespace= | ||
Line 45: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs13543,LSID1029,release012,COMPLETED | |profile_hcage=CNhs13543,LSID1029,release012,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=125 | |rna_box=125 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
Line 60: | Line 79: | ||
|rna_weight_ug=1.319355 | |rna_weight_ug=1.319355 | ||
|sample_age=21 | |sample_age=21 | ||
|sample_category=primary cells | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line= | |sample_cell_line= | ||
Line 81: | Line 101: | ||
|top_motifs=STAT5{A,B}:7.26373686279;STAT2,4,6:6.51422901718;FOSL2:5.70940310683;IRF7:5.49594908509;NFE2:5.4215323612;HLF:5.30363872559;NFE2L2:5.22224551507;FOS_FOS{B,L1}_JUN{B,D}:5.17275608512;CEBPA,B_DDIT3:5.14645494241;IRF1,2:4.88054584261;BACH2:4.86452619451;STAT1,3:4.76034948152;NFIL3:4.70536769893;PAX2:3.94504814512;NANOG{mouse}:3.9189338413;SPIB:3.8701073742;FOXP3:3.65895656622;HSF1,2:3.53500824816;NFKB1_REL_RELA:3.49543753505;SPI1:3.33287162064;SREBF1,2:3.28623889666;ETS1,2:3.26100287537;NFATC1..3:2.95054499329;ATF5_CREB3:2.86646459656;ATF6:2.75929506467;PAX8:2.68630393329;RUNX1..3:2.64528534748;ATF4:2.5995905807;NR1H4:2.49045994754;DMAP1_NCOR{1,2}_SMARC:2.48158394414;ATF2:2.38559876621;EP300:2.36238598272;JUN:2.30320334105;NFE2L1:2.2001500042;CDX1,2,4:2.12352224822;CREB1:2.09298253912;FOXN1:2.09285340172;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.97777770403;TGIF1:1.96059761265;ALX4:1.86082149491;ELF1,2,4:1.8492830891;MAFB:1.82230991968;HIF1A:1.27047837167;HOX{A5,B5}:1.0697840091;XBP1:1.06387672871;PAX3,7:0.988690524363;RXRA_VDR{dimer}:0.978911953555;RBPJ:0.96306210028;HMGA1,2:0.925045688762;SRF:0.827705111849;PPARG:0.799861101015;PDX1:0.741020121787;ZBTB16:0.630660147956;FOXO1,3,4:0.607180836616;AHR_ARNT_ARNT2:0.415732894315;TLX2:0.395958534649;EN1,2:0.320886601784;IKZF1:0.295532408786;VSX1,2:0.27014257041;NR6A1:0.245410721007;MEF2{A,B,C,D}:0.215366314476;HMX1:0.202741943959;TBP:0.184598884758;PRDM1:0.0690697004437;NANOG:0.0240022717422;GLI1..3:-0.00259387167336;HOXA9_MEIS1:-0.0921760272026;NR3C1:-0.112522168102;BPTF:-0.158536533591;HBP1_HMGB_SSRP1_UBTF:-0.19307207282;FOX{D1,D2}:-0.244818540579;SPZ1:-0.254549664049;ESRRA:-0.279866411438;OCT4_SOX2{dimer}:-0.283106523086;ALX1:-0.374440239383;GATA4:-0.390074010342;IKZF2:-0.401804668274;RFX2..5_RFXANK_RFXAP:-0.43842035297;MYB:-0.466144887138;RORA:-0.469061079797;POU2F1..3:-0.489799113258;FOX{F1,F2,J1}:-0.530924334385;SMAD1..7,9:-0.572347992455;TAL1_TCF{3,4,12}:-0.58345113336;PAX1,9:-0.601964614462;TFCP2:-0.617256474368;PAX6:-0.647507243209;FOXM1:-0.664232323565;SOX2:-0.710666397496;POU5F1:-0.763729552687;EGR1..3:-0.856663073272;HES1:-0.857168382564;ESR1:-0.878788747174;DBP:-0.895038031227;PAX4:-0.929092813489;RFX1:-1.01045776323;PRRX1,2:-1.05536387967;NKX2-1,4:-1.19270307381;REST:-1.19326024556;NHLH1,2:-1.2161638671;ZNF238:-1.22926572835;MZF1:-1.23320059459;HNF4A_NR2F1,2:-1.36008106182;RXR{A,B,G}:-1.36916065987;HNF1A:-1.39508088942;TFAP4:-1.4352193623;TEF:-1.44287385839;FOXL1:-1.45937823999;NKX3-1:-1.4610215736;PITX1..3:-1.52511558233;MYFfamily:-1.53353986942;NFIX:-1.54198046101;HOX{A6,A7,B6,B7}:-1.5688061911;GATA6:-1.58753281225;CRX:-1.61053063012;E2F1..5:-1.63333357554;FOXD3:-1.64974744086;FOXA2:-1.65882366199;NKX2-3_NKX2-5:-1.66687635663;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.71631393468;NKX3-2:-1.72189948411;MED-1{core}:-1.7298222708;MTE{core}:-1.80240470856;POU3F1..4:-1.82787988495;TEAD1:-1.83466468878;SOX5:-1.85985019112;ELK1,4_GABP{A,B1}:-1.87950446322;BREu{core}:-1.88121590305;CUX2:-1.88768442131;ADNP_IRX_SIX_ZHX:-1.90846764048;CDC5L:-1.91851213727;ZFP161:-1.92462377467;NKX2-2,8:-1.92936974329;ZBTB6:-1.94324399804;MYBL2:-1.95119089887;T:-1.96855089256;SP1:-1.97129787861;PATZ1:-1.97468046765;GZF1:-1.99347021768;ZEB1:-1.99621013837;GTF2A1,2:-2.00862664538;NKX6-1,2:-2.02390061471;GFI1B:-2.07682911594;MTF1:-2.09964982259;TLX1..3_NFIC{dimer}:-2.10120718521;GTF2I:-2.10395174287;TP53:-2.11385745404;FOX{I1,J2}:-2.11575862831;TFAP2B:-2.13824582714;FOXP1:-2.14004649915;POU6F1:-2.14185089061;TFDP1:-2.17182438479;HOX{A4,D4}:-2.21300950771;MAZ:-2.22169770164;SNAI1..3:-2.24502755547;POU1F1:-2.26298888597;MYOD1:-2.28304817387;SOX{8,9,10}:-2.28873423994;PBX1:-2.34285916596;XCPE1{core}:-2.34376405822;ZNF148:-2.35577459856;ZNF384:-2.38592878015;NFY{A,B,C}:-2.38609287832;KLF4:-2.54231616251;ZIC1..3:-2.55497504484;GCM1,2:-2.56348801515;bHLH_family:-2.61855914844;NR5A1,2:-2.6515921884;EBF1:-2.66205659356;HIC1:-2.69126703232;ONECUT1,2:-2.73783089073;FOXQ1:-2.7465238049;GFI1:-2.74918020362;AIRE:-2.7628359221;TFAP2{A,C}:-2.76537678064;TBX4,5:-2.81321480751;YY1:-2.84444234685;SOX17:-2.88540484236;UFEwm:-2.90368870597;RREB1:-2.94366777571;ARID5B:-2.95611859136;NRF1:-2.97348836598;PAX5:-3.05427212414;LMO2:-3.23721275806;EVI1:-3.39432936098;AR:-3.47476036207;HAND1,2:-3.5161587192;ZNF143:-3.68146913265;LHX3,4:-3.86681483584;ZNF423:-3.89980057588;LEF1_TCF7_TCF7L1,2:-4.09551995992;TOPORS:-4.22336293132 | |top_motifs=STAT5{A,B}:7.26373686279;STAT2,4,6:6.51422901718;FOSL2:5.70940310683;IRF7:5.49594908509;NFE2:5.4215323612;HLF:5.30363872559;NFE2L2:5.22224551507;FOS_FOS{B,L1}_JUN{B,D}:5.17275608512;CEBPA,B_DDIT3:5.14645494241;IRF1,2:4.88054584261;BACH2:4.86452619451;STAT1,3:4.76034948152;NFIL3:4.70536769893;PAX2:3.94504814512;NANOG{mouse}:3.9189338413;SPIB:3.8701073742;FOXP3:3.65895656622;HSF1,2:3.53500824816;NFKB1_REL_RELA:3.49543753505;SPI1:3.33287162064;SREBF1,2:3.28623889666;ETS1,2:3.26100287537;NFATC1..3:2.95054499329;ATF5_CREB3:2.86646459656;ATF6:2.75929506467;PAX8:2.68630393329;RUNX1..3:2.64528534748;ATF4:2.5995905807;NR1H4:2.49045994754;DMAP1_NCOR{1,2}_SMARC:2.48158394414;ATF2:2.38559876621;EP300:2.36238598272;JUN:2.30320334105;NFE2L1:2.2001500042;CDX1,2,4:2.12352224822;CREB1:2.09298253912;FOXN1:2.09285340172;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.97777770403;TGIF1:1.96059761265;ALX4:1.86082149491;ELF1,2,4:1.8492830891;MAFB:1.82230991968;HIF1A:1.27047837167;HOX{A5,B5}:1.0697840091;XBP1:1.06387672871;PAX3,7:0.988690524363;RXRA_VDR{dimer}:0.978911953555;RBPJ:0.96306210028;HMGA1,2:0.925045688762;SRF:0.827705111849;PPARG:0.799861101015;PDX1:0.741020121787;ZBTB16:0.630660147956;FOXO1,3,4:0.607180836616;AHR_ARNT_ARNT2:0.415732894315;TLX2:0.395958534649;EN1,2:0.320886601784;IKZF1:0.295532408786;VSX1,2:0.27014257041;NR6A1:0.245410721007;MEF2{A,B,C,D}:0.215366314476;HMX1:0.202741943959;TBP:0.184598884758;PRDM1:0.0690697004437;NANOG:0.0240022717422;GLI1..3:-0.00259387167336;HOXA9_MEIS1:-0.0921760272026;NR3C1:-0.112522168102;BPTF:-0.158536533591;HBP1_HMGB_SSRP1_UBTF:-0.19307207282;FOX{D1,D2}:-0.244818540579;SPZ1:-0.254549664049;ESRRA:-0.279866411438;OCT4_SOX2{dimer}:-0.283106523086;ALX1:-0.374440239383;GATA4:-0.390074010342;IKZF2:-0.401804668274;RFX2..5_RFXANK_RFXAP:-0.43842035297;MYB:-0.466144887138;RORA:-0.469061079797;POU2F1..3:-0.489799113258;FOX{F1,F2,J1}:-0.530924334385;SMAD1..7,9:-0.572347992455;TAL1_TCF{3,4,12}:-0.58345113336;PAX1,9:-0.601964614462;TFCP2:-0.617256474368;PAX6:-0.647507243209;FOXM1:-0.664232323565;SOX2:-0.710666397496;POU5F1:-0.763729552687;EGR1..3:-0.856663073272;HES1:-0.857168382564;ESR1:-0.878788747174;DBP:-0.895038031227;PAX4:-0.929092813489;RFX1:-1.01045776323;PRRX1,2:-1.05536387967;NKX2-1,4:-1.19270307381;REST:-1.19326024556;NHLH1,2:-1.2161638671;ZNF238:-1.22926572835;MZF1:-1.23320059459;HNF4A_NR2F1,2:-1.36008106182;RXR{A,B,G}:-1.36916065987;HNF1A:-1.39508088942;TFAP4:-1.4352193623;TEF:-1.44287385839;FOXL1:-1.45937823999;NKX3-1:-1.4610215736;PITX1..3:-1.52511558233;MYFfamily:-1.53353986942;NFIX:-1.54198046101;HOX{A6,A7,B6,B7}:-1.5688061911;GATA6:-1.58753281225;CRX:-1.61053063012;E2F1..5:-1.63333357554;FOXD3:-1.64974744086;FOXA2:-1.65882366199;NKX2-3_NKX2-5:-1.66687635663;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.71631393468;NKX3-2:-1.72189948411;MED-1{core}:-1.7298222708;MTE{core}:-1.80240470856;POU3F1..4:-1.82787988495;TEAD1:-1.83466468878;SOX5:-1.85985019112;ELK1,4_GABP{A,B1}:-1.87950446322;BREu{core}:-1.88121590305;CUX2:-1.88768442131;ADNP_IRX_SIX_ZHX:-1.90846764048;CDC5L:-1.91851213727;ZFP161:-1.92462377467;NKX2-2,8:-1.92936974329;ZBTB6:-1.94324399804;MYBL2:-1.95119089887;T:-1.96855089256;SP1:-1.97129787861;PATZ1:-1.97468046765;GZF1:-1.99347021768;ZEB1:-1.99621013837;GTF2A1,2:-2.00862664538;NKX6-1,2:-2.02390061471;GFI1B:-2.07682911594;MTF1:-2.09964982259;TLX1..3_NFIC{dimer}:-2.10120718521;GTF2I:-2.10395174287;TP53:-2.11385745404;FOX{I1,J2}:-2.11575862831;TFAP2B:-2.13824582714;FOXP1:-2.14004649915;POU6F1:-2.14185089061;TFDP1:-2.17182438479;HOX{A4,D4}:-2.21300950771;MAZ:-2.22169770164;SNAI1..3:-2.24502755547;POU1F1:-2.26298888597;MYOD1:-2.28304817387;SOX{8,9,10}:-2.28873423994;PBX1:-2.34285916596;XCPE1{core}:-2.34376405822;ZNF148:-2.35577459856;ZNF384:-2.38592878015;NFY{A,B,C}:-2.38609287832;KLF4:-2.54231616251;ZIC1..3:-2.55497504484;GCM1,2:-2.56348801515;bHLH_family:-2.61855914844;NR5A1,2:-2.6515921884;EBF1:-2.66205659356;HIC1:-2.69126703232;ONECUT1,2:-2.73783089073;FOXQ1:-2.7465238049;GFI1:-2.74918020362;AIRE:-2.7628359221;TFAP2{A,C}:-2.76537678064;TBX4,5:-2.81321480751;YY1:-2.84444234685;SOX17:-2.88540484236;UFEwm:-2.90368870597;RREB1:-2.94366777571;ARID5B:-2.95611859136;NRF1:-2.97348836598;PAX5:-3.05427212414;LMO2:-3.23721275806;EVI1:-3.39432936098;AR:-3.47476036207;HAND1,2:-3.5161587192;ZNF143:-3.68146913265;LHX3,4:-3.86681483584;ZNF423:-3.89980057588;LEF1_TCF7_TCF7L1,2:-4.09551995992;TOPORS:-4.22336293132 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11880-125C8;search_select_hide=table117:FF:11880-125C8 | |||
}} | }} |
Latest revision as of 18:26, 4 June 2020
Name: | CD14+ monocytes - treated with BCG, donor3 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs13543 |
Sample type: | primary cells |
Genomic View: | UCSC |
RefEX: | Specific genes |
FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11 |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13543
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13543
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.0893 |
10 | 10 | 0.0242 |
100 | 100 | 0.987 |
101 | 101 | 0.839 |
102 | 102 | 0.928 |
103 | 103 | 0.248 |
104 | 104 | 0.526 |
105 | 105 | 0.165 |
106 | 106 | 0.00224 |
107 | 107 | 0.318 |
108 | 108 | 0.763 |
109 | 109 | 0.245 |
11 | 11 | 0.162 |
110 | 110 | 0.132 |
111 | 111 | 0.0825 |
112 | 112 | 0.351 |
113 | 113 | 0.599 |
114 | 114 | 0.0202 |
115 | 115 | 0.19 |
116 | 116 | 0.867 |
117 | 117 | 0.0775 |
118 | 118 | 0.209 |
119 | 119 | 0.169 |
12 | 12 | 0.309 |
120 | 120 | 0.33 |
121 | 121 | 0.541 |
122 | 122 | 0.554 |
123 | 123 | 0.684 |
124 | 124 | 0.85 |
125 | 125 | 0.322 |
126 | 126 | 0.25 |
127 | 127 | 0.482 |
128 | 128 | 0.0633 |
129 | 129 | 0.383 |
13 | 13 | 0.0797 |
130 | 130 | 0.348 |
131 | 131 | 0.997 |
132 | 132 | 0.0643 |
133 | 133 | 0.611 |
134 | 134 | 0.648 |
135 | 135 | 0.494 |
136 | 136 | 0.997 |
137 | 137 | 0.0208 |
138 | 138 | 0.277 |
139 | 139 | 0.091 |
14 | 14 | 0.533 |
140 | 140 | 0.564 |
141 | 141 | 0.219 |
142 | 142 | 0.098 |
143 | 143 | 0.032 |
144 | 144 | 0.619 |
145 | 145 | 0.354 |
146 | 146 | 0.9 |
147 | 147 | 0.697 |
148 | 148 | 0.0187 |
149 | 149 | 0.997 |
15 | 15 | 0.145 |
150 | 150 | 0.384 |
151 | 151 | 0.482 |
152 | 152 | 0.4 |
153 | 153 | 0.889 |
154 | 154 | 0.776 |
155 | 155 | 0.808 |
156 | 156 | 0.512 |
157 | 157 | 0.815 |
158 | 158 | 0.0853 |
159 | 159 | 0.114 |
16 | 16 | 0.299 |
160 | 160 | 0.396 |
161 | 161 | 0.464 |
162 | 162 | 0.217 |
163 | 163 | 0.136 |
164 | 164 | 0.15 |
165 | 165 | 0.224 |
166 | 166 | 0.745 |
167 | 167 | 0.236 |
168 | 168 | 0.126 |
169 | 169 | 0.00949 |
17 | 17 | 0.267 |
18 | 18 | 0.145 |
19 | 19 | 0.438 |
2 | 2 | 0.528 |
20 | 20 | 0.23 |
21 | 21 | 0.705 |
22 | 22 | 0.298 |
23 | 23 | 0.0448 |
24 | 24 | 0.314 |
25 | 25 | 0.361 |
26 | 26 | 0.0762 |
27 | 27 | 0.68 |
28 | 28 | 0.44 |
29 | 29 | 0.234 |
3 | 3 | 0.146 |
30 | 30 | 0.483 |
31 | 31 | 0.804 |
32 | 32 | 0.528 |
33 | 33 | 0.206 |
34 | 34 | 0.741 |
35 | 35 | 0.147 |
36 | 36 | 0.0668 |
37 | 37 | 0.0695 |
38 | 38 | 0.387 |
39 | 39 | 0.842 |
4 | 4 | 0.877 |
40 | 40 | 0.201 |
41 | 41 | 0.0174 |
42 | 42 | 0.347 |
43 | 43 | 0.0273 |
44 | 44 | 0.776 |
45 | 45 | 0.835 |
46 | 46 | 0.19 |
47 | 47 | 0.543 |
48 | 48 | 0.476 |
49 | 49 | 0.173 |
5 | 5 | 0.254 |
50 | 50 | 0.927 |
51 | 51 | 0.491 |
52 | 52 | 0.461 |
53 | 53 | 0.642 |
54 | 54 | 0.432 |
55 | 55 | 0.616 |
56 | 56 | 0.705 |
57 | 57 | 0.877 |
58 | 58 | 0.171 |
59 | 59 | 0.306 |
6 | 6 | 0.83 |
60 | 60 | 0.0547 |
61 | 61 | 0.732 |
62 | 62 | 0.0778 |
63 | 63 | 0.548 |
64 | 64 | 0.42 |
65 | 65 | 0.259 |
66 | 66 | 0.31 |
67 | 67 | 0.484 |
68 | 68 | 0.861 |
69 | 69 | 0.343 |
7 | 7 | 0.218 |
70 | 70 | 0.0461 |
71 | 71 | 0.0318 |
72 | 72 | 0.2 |
73 | 73 | 0.204 |
74 | 74 | 0.0719 |
75 | 75 | 0.127 |
76 | 76 | 0.176 |
77 | 77 | 0.557 |
78 | 78 | 0.152 |
79 | 79 | 0.986 |
8 | 8 | 0.405 |
80 | 80 | 0.149 |
81 | 81 | 0.375 |
82 | 82 | 0.249 |
83 | 83 | 0.0153 |
84 | 84 | 0.321 |
85 | 85 | 0.0479 |
86 | 86 | 0.0729 |
87 | 87 | 0.417 |
88 | 88 | 0.672 |
89 | 89 | 0.175 |
9 | 9 | 0.376 |
90 | 90 | 0.0971 |
91 | 91 | 0.315 |
92 | 92 | 0.303 |
93 | 93 | 0.354 |
94 | 94 | 0.0858 |
95 | 95 | 0.379 |
96 | 96 | 0.591 |
97 | 97 | 0.636 |
98 | 98 | 0.109 |
99 | 99 | 0.0602 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs13543
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0011103 human CD14-positive monocytes - treated with BCG sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0000219 (motile cell)
0000325 (stuff accumulating cell)
0000473 (defensive cell)
0000234 (phagocyte)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0000255 (eukaryotic cell)
0000576 (monocyte)
0000860 (classical monocyte)
0002057 (CD14-positive, CD16-negative classical monocyte)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000625 (experimental infection sample)
0000350 (experimentally modified sample)
0000628 (Bacillus Calmette-Guerin treatment sample)
0011103 (human CD14-positive monocytes - treated with BCG sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)
CL:0002057 (CD14-positive, CD16-negative classical monocyte)