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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00004669
|accession_numbers=CAGE;DRX008479;DRR009351;DRZ000776;DRZ002161;DRZ012126;DRZ013511
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002100,UBERON:0000064,UBERON:0004119,UBERON:0000466,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009569,UBERON:0005178,UBERON:0000072,UBERON:0005177,UBERON:0000464,UBERON:0005181,UBERON:0010317,UBERON:0007196,UBERON:0002185,UBERON:0000065,UBERON:0001558,UBERON:0001004,UBERON:0002224,UBERON:0000915
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002100,UBERON:0000064,UBERON:0004119,UBERON:0000466,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009569,UBERON:0005178,UBERON:0000072,UBERON:0005177,UBERON:0000464,UBERON:0005181,UBERON:0010317,UBERON:0007196,UBERON:0002185,UBERON:0000065,UBERON:0001558,UBERON:0001004,UBERON:0002224,UBERON:0000915
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0002598
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0002598
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|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr6:134210243..134210257,+!p1@TCF21!2.42!262.75!TCF21;;chr19:46801639..46801699,+!p1@HIF3A!1.79!60.77!HIF3A;;chr14:61116183..61116208,-!p1@SIX1!1.63!152.35!SIX1;;chr17:46671108..46671147,-!p1@HOXB5!1.57!36.37!HOXB5;;chr16:86544113..86544145,+!p1@FOXF1!1.51!38.51!FOXF1;;chr17:59477233..59477263,+!p1@TBX2!1.50!91.15!TBX2;;chr5:92918919..92918942,+!p1@NR2F1!1.45!118.54!NR2F1;;chr11:113930425..113930471,+!p1@ZBTB16!1.40!34.24!ZBTB16;;chr15:57511609..57511651,+!p2@TCF12!1.34!35.09!TCF12;;chr17:46675420..46675465,-!p3@HOXB6!1.33!23.54!HOXB6;;chr11:46299199..46299233,+!p1@CREB3L1!1.32!99.71!CREB3L1;;chr3:12329397..12329433,+!p2@PPARG!1.30!42.79!PPARG;;chr2:19558373..19558392,-!p1@OSR1!1.29!49.64!OSR1;;chr17:46675558..46675577,-!p2@HOXB6!1.28!17.97!HOXB6;;chr8:49833948..49833973,-!p2@SNAI2!1.23!99.71!SNAI2;;chr6:1389789..1389821,+!p1@FOXF2!1.19!20.11!FOXF2;;chr11:46299539..46299620,+!p2@CREB3L1!1.15!22.25!CREB3L1;;chr5:92919100..92919135,+!p3@NR2F1!1.15!15.83!NR2F1;;chr1:170633348..170633399,+!p2@PRRX1!1.14!17.55!PRRX1;;chr1:170632285..170632309,+!p1@PRRX1!1.14!14.55!PRRX1;;chr7:19157248..19157268,-!p1@TWIST1!1.13!34.66!TWIST1;;chr15:42749722..42749739,-!p2@ZFP106!1.13!22.25!ZFP106;;chr17:46655704..46655718,-!p2@HOXB4!1.11!17.97!HOXB4;;chr19:13134772..13134822,+!p2@NFIX!1.11!17.55!NFIX;;chr12:115122318..115122331,-!p2@TBX3!1.10!11.55!TBX3;;chr17:46667628..46667642,-!p2@HOXB3!1.08!11.13!HOXB3;;chr17:59529743..59529798,+!p1@TBX4!1.08!11.13!TBX4;;chr12:66218255..66218304,+!p3@HMGA2!1.07!29.10!HMGA2;;chr15:96873984..96873999,+!p3@NR2F2!1.05!76.60!NR2F2;;chr12:66218598..66218645,+!p2@HMGA2!1.05!47.93!HMGA2;;chr2:239756671..239756732,+!p1@TWIST2!1.05!33.38!TWIST2;;chr17:59477275..59477286,+!p3@TBX2!1.05!13.69!TBX2;;chr9:94186101..94186122,-!p1@NFIL3!1.03!137.80!NFIL3;;chr5:92918956..92918969,+!p4@NR2F1!1.03!10.70!NR2F1;;chr17:46667594..46667619,-!p1@HOXB3!1.02!9.41!HOXB3;;chr21:47063625..47063658,+!p1@PCBP3!1.01!41.08!PCBP3;;chr1:170633262..170633285,+!p3@PRRX1!1.01!10.70!PRRX1;;chr8:49833978..49833996,-!p1@SNAI2!1.00!187.44!SNAI2;;chr1:170632959..170632987,+!p4@PRRX1!1.00!9.84!PRRX1;;chr11:113930401..113930422,+!p3@ZBTB16!1.00!8.99!ZBTB16;;chr17:1959369..1959388,+!p2@HIC1!0.99!23.54!HIC1;;chr17:59477197..59477212,+!p2@TBX2!0.99!15.41!TBX2;;chr3:141105705..141105770,+!p4@ZBTB38!0.99!10.70!ZBTB38;;chr15:96874012..96874042,+!p2@NR2F2!0.98!79.17!NR2F2;;chr9:73029219..73029289,-!p2@KLF9!0.97!25.68!KLF9;;chr5:158526917..158526932,-!p1@EBF1!0.97!21.40!EBF1;;chr7:27183263..27183284,-!p2@HOXA5!0.96!8.13!HOXA5;;chr17:59477403..59477414,+!p4@TBX2!0.96!8.13!TBX2;;chrX:106960285..106960299,-!p1@TSC22D3!0.95!217.39!TSC22D3;;chr11:47279248..47279264,+!p3@NR1H3!0.95!8.99!NR1H3;;chr9:16870710..16870763,-!p1@BNC2!0.94!13.69!BNC2;;chrX:107018969..107019024,-!p6@TSC22D3!0.94!10.70!TSC22D3;;chr17:46675469..46675481,-!p4@HOXB6!0.94!7.70!HOXB6;;chr9:128509663..128509715,+!p1@PBX3!0.93!26.53!PBX3;;chr9:16870659..16870675,-!p2@BNC2!0.93!9.41!BNC2;;chr2:239756739..239756755,+!p2@TWIST2!0.91!12.41!TWIST2;;chr20:39317868..39317884,-!p1@MAFB!0.90!85.59!MAFB;;chr16:79634624..79634642,-!p1@MAF!0.90!28.67!MAF;;chr3:12329358..12329393,+!p3@PPARG!0.90!17.97!PPARG;;chr1:158979872..158979898,+!p3@IFI16!0.89!21.82!IFI16;;chr9:128510454..128510469,+!p3@PBX3!0.89!8.99!PBX3;;chr5:92918894..92918912,+!p2@NR2F1!0.87!22.25!NR2F1;;chr15:96876966..96877017,+!p12@NR2F2!0.87!9.41!NR2F2;;chr5:92919068..92919082,+!p5@NR2F1!0.87!7.70!NR2F1;;chr14:61191018..61191048,-!p1@SIX4!0.86!14.12!SIX4;;chr6:45296048..45296082,+!p1@RUNX2!0.86!7.27!RUNX2;;chr20:42543441..42543497,+!p1@TOX2!0.85!29.10!TOX2;;chr9:77112244..77112262,+!p1@RORB!0.85!6.85!RORB;;chr11:46299443..46299459,+!p4@CREB3L1!0.84!5.99!CREB3L1;;chr12:114843940..114843955,-!p2@TBX5!0.84!5.99!TBX5;;chr5:122424955..122424988,+!p2@PRDM6!0.84!5.99!PRDM6;;chr7:27183291..27183324,-!p1@HOXA5!0.84!5.99!HOXA5;;chr2:66662281..66662308,+!p1@MEIS1!0.83!20.97!MEIS1;;chr15:96874927..96874938,+!p8@NR2F2!0.83!12.84!NR2F2;;chr2:5832508..5832524,+!p1@SOX11!0.82!5.56!SOX11;;chr12:115122303..115122314,-!p6@TBX3!0.82!5.56!TBX3;;chr9:73028814..73028895,-!p1@KLF9!0.81!58.63!KLF9;;chr9:94186131..94186174,-!p2@NFIL3!0.81!47.93!NFIL3;;chr3:126076242..126076257,-!p1@KLF15!0.81!6.85!KLF15;;chr10:77161504..77161530,-!p1@ZNF503!0.80!76.17!ZNF503;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.80!58.20!GLIS2;;chr13:41240717..41240735,-!p2@FOXO1!0.80!39.37!FOXO1;;chr11:65687362..65687436,+!p3@DRAP1!0.80!26.10!DRAP1;;chr3:71179746..71179783,-!p7@FOXP1!0.79!18.83!FOXP1;;chr17:46675539..46675551,-!p7@HOXB6!0.79!5.14!HOXB6;;chr12:115121962..115121987,-!p1@TBX3!0.78!45.79!TBX3;;chr5:72744594..72744609,-!p1@FOXD1!0.78!24.82!FOXD1;;chrX:106960180..106960197,-!p2@TSC22D3!0.78!20.97!TSC22D3;;chr19:50432453..50432468,+!p1@ATF5!0.77!303.84!ATF5;;chr3:69788576..69788648,+!p1@MITF!0.77!28.24!MITF;;chr9:94186085..94186096,-!p3@NFIL3!0.77!8.56!NFIL3;;chr2:43453734..43453751,-!p1@ZFP36L2!0.76!554.61!ZFP36L2;;chr17:46670037..46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89883509..89883587,-!p2@FOXN3!0.21!9.41!FOXN3;;chr19:52901094..52901134,+!p1@ZNF528!0.21!8.99!ZNF528;;chr12:498695..498748,-!p2@KDM5A!0.21!8.99!KDM5A;;chr4:146859927..146860055,-!p1@ZNF827!0.21!8.13!ZNF827;;chr7:150076406..150076456,+!p1@ZNF775!0.21!5.99!ZNF775;;chr19:53758094..53758147,-!p1@ZNF677!0.21!4.71!ZNF677;;chr2:27357446..27357475,-!p2@PREB!0.21!4.28!PREB;;chr1:161736140..161736151,+!p3@ATF6!0.21!3.85!ATF6;;chr19:53636125..53636178,-!p1@ZNF415!0.21!3.42!ZNF415;;chr19:46271505..46271575,-!p2@SIX5!0.21!3.00!SIX5;;chr3:71114115..71114126,-!p14@FOXP1!0.21!1.71!FOXP1;;chr11:65686802..65686818,+!p6@DRAP1!0.21!1.71!DRAP1;;chr17:36861735..36861755,+!p4@MLLT6!0.21!1.71!MLLT6;;chr19:3572908..3572917,+!p3@HMG20B!0.21!1.71!HMG20B;;chr15:57210692..57210713,-!p5@ZNF280D!0.21!1.28!ZNF280D;;chr1:211432593..211432642,+!p6@RCOR3!0.21!1.28!RCOR3;;chr8:128752771..128752843,+!p9@MYC!0.21!1.28!MYC;;chrX:66763856..66763896,+!p1@AR!0.21!1.28!AR;;chr17:38504601..38504634,+!p9@RARA!0.21!0.86!RARA;;chr17:53342311..53342400,+!p1@HLF!0.21!0.86!HLF;;chr18:56530595..56530606,+!p11@ZNF532!0.21!0.86!ZNF532;;chr10:21823296..21823309,+!p8@MLLT10!0.21!0.86!MLLT10;;chr10:3824229..3824253,-!p7@KLF6!0.21!0.86!KLF6;;chr11:10876220..10876224,-!p3@ZBED5!0.21!0.86!ZBED5;;chr13:37393324..37393335,+!p2@RFXAP!0.21!0.86!RFXAP;;chr6:32158004..32158015,-!p2@PBX2!0.21!0.86!PBX2;;chr10:3827389..3827408,-!p1@KLF6!0.20!109.55!KLF6;;chr1:156470556..156470643,-!p1@MEF2D!0.20!57.77!MEF2D;;chr20:47894569..47894799,-!p1@ZNFX1!0.20!38.09!ZNFX1;;chr6:134274354..134274371,+!p1@TBPL1!0.20!37.23!TBPL1;;chr7:74072021..74072119,+!p1@GTF2I!0.20!36.37!GTF2I;;chr5:132299313..132299334,-!p1@AFF4!0.20!26.96!AFF4;;chr9:35732592..35732640,+!p1@CREB3!0.20!18.40!CREB3;;chr8:144718171..144718244,+!p1@ZNF623!0.20!14.55!ZNF623;;chr3:128206762..128206781,-!p2@GATA2!0.20!8.13!GATA2;;chr19:52643169..52643199,-!p1@ZNF616!0.20!7.70!ZNF616;;chr13:45151434..45151507,-!p3@TSC22D1!0.20!7.27!TSC22D1;;chr18:45457004..45457043,-!p3@SMAD2!0.20!5.56!SMAD2;;chr9:137218341..137218361,+!p2@RXRA!0.20!5.14!RXRA;;chr16:29817231..29817290,+!p10@MAZ!0.20!3.42!MAZ;;chr3:71007770..71007789,-!p9@FOXP1!0.20!3.00!FOXP1;;chr4:87928328..87928351,+!p6@AFF1!0.20!3.00!AFF1;;chr6:144329500..144329526,-!p4@PLAGL1!0.20!2.57!PLAGL1;;chr1:35656397..35656455,-!p3@SFPQ!0.20!2.57!SFPQ;;chr9:73028387..73028418,-!p4@KLF9!0.20!2.14!KLF9;;chr5:150284532..150284549,-!p1@ZNF300!0.20!2.14!ZNF300;;chr5:178157700..178157734,-!p3@ZNF354A!0.20!2.14!ZNF354A;;chr7:64467093..64467104,-!p2@ERV3-1,p2@ZNF117!0.20!2.14!ZNF117;;chr7:64254771..64254782,+!p3@ZNF138!0.20!1.71!ZNF138;;chr8:128750175..128750201,+!p8@MYC!0.20!1.71!MYC;;chr19:58570605..58570655,+!p1@ZNF135!0.20!1.71!ZNF135;;chr3:101395999..101396010,-!p3@ZBTB11!0.20!1.71!ZBTB11;;chr3:150126038..150126052,+!p8@TSC22D2!0.20!1.71!TSC22D2;;chr4:26322373..26322393,+!p4@RBPJ!0.20!1.28!RBPJ;;chr8:72756267..72756296,-!p4@MSC!0.20!1.28!MSC;;chr9:88969226..88969237,-!p4@ZCCHC6!0.20!1.28!ZCCHC6;;chr18:74207186..74207204,-!p3@ZNF516!0.20!1.28!ZNF516;;chr14:89878472..89878496,-!p7@FOXN3!0.20!0.86!FOXN3;;chr19:24269971..24269980,+!p6@ZNF254!0.20!0.86!ZNF254;;chr1:114258267..114258270,-!p5@PHTF1!0.20!0.86!PHTF1;;chr5:137800878..137800898,+!p6@EGR1!0.20!0.86!EGR1;;chr12:53835508..53835533,+!p1@PRR13,p2@PCBP2!0.19!106.56!PCBP2;;chr4:57774042..57774114,+!p1@REST!0.19!33.38!REST;;
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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000056;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000187;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000192;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002598;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000065;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001558;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002185;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002385;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005181
|ffid_belonging_in_development=CL:0000355,CL:0000222,CL:0000514
|ffid_belonging_in_development=CL:0000355,CL:0000222,CL:0000514
|fonse_cell_line=
|fonse_cell_line=
Line 38: Line 42:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Bronchial%252c%2520donor2.CNhs12348.11592-120G8.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Bronchial%252c%2520donor2.CNhs12348.11592-120G8.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Bronchial%252c%2520donor2.CNhs12348.11592-120G8.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Bronchial%252c%2520donor2.CNhs12348.11592-120G8.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Bronchial%252c%2520donor2.CNhs12348.11592-120G8.hg38.nobarcode.ctss.bed.gz
|id=FF:11592-120G8
|id=FF:11592-120G8
|is_a=EFO:0002091;;FF:0000179
|is_a=EFO:0002091;;FF:0000179
|is_obsolete=
|is_obsolete=
|library_id=CNhs12348
|library_id_phase_based=2:CNhs12348
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11592
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11592
|name=Smooth Muscle Cells - Bronchial, donor2
|name=Smooth Muscle Cells - Bronchial, donor2
|namespace=
|namespace=
Line 46: Line 61:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs12348,LSID913,release011,COMPLETED
|profile_hcage=CNhs12348,LSID913,release011,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
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Line 61: Line 79:
|rna_weight_ug=10
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|sample_age=
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|sample_category=primary cells
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|sample_cell_line=
Line 82: Line 101:
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|top_motifs=GZF1:2.21197814115;ZNF238:1.62188894313;TFAP4:1.44052493399;EN1,2:1.40077843482;AIRE:1.34989737571;FOXD3:1.34814192483;HOX{A6,A7,B6,B7}:1.31318910393;RXR{A,B,G}:1.2325599794;GFI1B:1.18123302003;MYBL2:1.15863630467;TEF:1.14172726566;bHLH_family:1.128365355;PAX5:1.11520105489;HOX{A5,B5}:1.10468791194;GATA4:1.08960733919;NKX2-2,8:1.05473393256;NFIX:1.05303688907;EBF1:1.04920705143;NKX2-1,4:1.03470973168;GLI1..3:1.02969545827;CDX1,2,4:1.01202246084;KLF4:0.981893429466;DBP:0.97921161847;NFATC1..3:0.976880250909;UFEwm:0.947960195871;ALX4:0.89977236346;ESR1:0.894074680495;PATZ1:0.885822942189;TLX1..3_NFIC{dimer}:0.865271861095;NR3C1:0.861995357449;NKX6-1,2:0.859213559361;GTF2I:0.803127112971;FOXO1,3,4:0.762181931362;TAL1_TCF{3,4,12}:0.750410652317;HOX{A4,D4}:0.729017387666;EVI1:0.726029384634;NKX3-1:0.703064161764;SRF:0.689752349438;NR1H4:0.678853311379;FOXM1:0.67769742585;SPZ1:0.660696573254;MAZ:0.651118268623;GTF2A1,2:0.619393724211;STAT2,4,6:0.603734785497;STAT5{A,B}:0.594569487961;TEAD1:0.571184814789;ZNF384:0.55540461078;SREBF1,2:0.548176168122;LHX3,4:0.539029801927;MYFfamily:0.534957508256;SOX17:0.527917139001;NHLH1,2:0.524137205846;ZIC1..3:0.494616237397;HAND1,2:0.492511933019;FOXP3:0.492260543129;ZNF148:0.485974087931;HLF:0.468187078112;NANOG{mouse}:0.45735397701;HNF4A_NR2F1,2:0.450744674032;MZF1:0.449210789572;ARID5B:0.429733784822;AHR_ARNT_ARNT2:0.39340147462;PAX6:0.382492362034;POU3F1..4:0.375288880766;TP53:0.368852860208;ATF6:0.35601312703;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.350943418795;RBPJ:0.336620286968;ONECUT1,2:0.332014472416;VSX1,2:0.331976073078;HIC1:0.328164197844;ZBTB6:0.322796217873;EGR1..3:0.320195646931;MED-1{core}:0.310329749002;CEBPA,B_DDIT3:0.309047893062;HMGA1,2:0.304060262616;RREB1:0.302570057541;PRRX1,2:0.293614912227;TFCP2:0.291260520531;ALX1:0.290020422821;DMAP1_NCOR{1,2}_SMARC:0.2871809855;MTE{core}:0.271070531927;CDC5L:0.260069165948;XBP1:0.254118869138;AR:0.238455268263;RORA:0.229635854396;GCM1,2:0.223134091078;TFAP2{A,C}:0.217152458323;POU6F1:0.21348432246;HSF1,2:0.20682221185;PRDM1:0.197455762955;TLX2:0.188883754113;PBX1:0.159986480743;SOX5:0.120982518614;TFAP2B:0.108199182566;MTF1:0.104206829983;NFE2L2:0.101779852935;ZBTB16:0.0814669567751;ZFP161:0.0772625388247;BPTF:0.0719975710646;IRF1,2:0.07009794458;RFX2..5_RFXANK_RFXAP:0.062988890342;FOXL1:0.0402035296384;ZNF423:0.0369196130483;HNF1A:0.0319773673601;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.0300093725616;ADNP_IRX_SIX_ZHX:0.0116549144419;CUX2:0.0109436616582;HIF1A:-0.00915077464957;TBX4,5:-0.0179678751338;FOX{D1,D2}:-0.0222650953706;NKX2-3_NKX2-5:-0.0229774903031;PAX8:-0.0443262485534;T:-0.045701283917;PAX1,9:-0.0545405851249;PDX1:-0.057307910281;SP1:-0.0615539073301;HES1:-0.0636691292097;PAX4:-0.0650580482779;BREu{core}:-0.0793350298958;YY1:-0.0893117617363;STAT1,3:-0.0936904375936;FOXA2:-0.101596143658;CRX:-0.11187915377;FOXQ1:-0.11783311083;IKZF1:-0.140301771638;TBP:-0.143306036219;SMAD1..7,9:-0.14951713267;FOSL2:-0.1498422539;EP300:-0.17353348358;NFE2:-0.179098208413;RXRA_VDR{dimer}:-0.185282788319;MEF2{A,B,C,D}:-0.186130477305;JUN:-0.197886327292;RUNX1..3:-0.198562774301;POU5F1:-0.206368158359;XCPE1{core}:-0.213156309651;FOS_FOS{B,L1}_JUN{B,D}:-0.216669380624;TOPORS:-0.221571406418;BACH2:-0.229199810958;NFE2L1:-0.230820056041;TFDP1:-0.238911055678;NKX3-2:-0.244337667711;TGIF1:-0.249335690806;RFX1:-0.271334901139;IRF7:-0.282975636041;MAFB:-0.309342716386;NFKB1_REL_RELA:-0.336110597862;HOXA9_MEIS1:-0.340581112802;NR5A1,2:-0.34235384489;LEF1_TCF7_TCF7L1,2:-0.381369471182;REST:-0.382667637588;ATF2:-0.384542072144;HMX1:-0.423513768981;ZNF143:-0.432019538603;NRF1:-0.453949357153;ATF4:-0.478634046422;FOX{F1,F2,J1}:-0.486986426835;MYB:-0.502032058874;SPI1:-0.517237450613;NFIL3:-0.525576137075;HBP1_HMGB_SSRP1_UBTF:-0.539728177546;NANOG:-0.539846452767;PAX3,7:-0.541627940983;LMO2:-0.542898450635;ATF5_CREB3:-0.545097546874;GFI1:-0.551239803429;PAX2:-0.554972582618;NR6A1:-0.579319990972;ESRRA:-0.583091702985;CREB1:-0.590779856787;GATA6:-0.62821615936;ETS1,2:-0.629748232459;SOX2:-0.72898933133;SPIB:-0.744162974754;IKZF2:-0.767403250151;ELF1,2,4:-0.782914214004;ELK1,4_GABP{A,B1}:-0.806394817849;POU2F1..3:-0.841187847833;OCT4_SOX2{dimer}:-0.882615264239;FOXN1:-0.884470199315;SNAI1..3:-0.885877133158;E2F1..5:-0.925914172846;POU1F1:-0.953822137185;ZEB1:-0.969855101795;MYOD1:-1.00897609268;FOXP1:-1.02250324954;SOX{8,9,10}:-1.10735365048;NFY{A,B,C}:-1.22535482893;PITX1..3:-1.31380019058;FOX{I1,J2}:-1.59993546557;PPARG:-2.28972683593
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11592-120G8;search_select_hide=table117:FF:11592-120G8
}}
}}

Latest revision as of 18:10, 4 June 2020

Name:Smooth Muscle Cells - Bronchial, donor2
Species:Human (Homo sapiens)
Library ID:CNhs12348
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuelung
dev stageNA
sexNA
ageNA
cell typesmooth muscle cell
cell lineNA
companySciencell/3H
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberSC3405
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004669
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12348 CAGE DRX008479 DRR009351
Accession ID Hg19

Library idBAMCTSS
CNhs12348 DRZ000776 DRZ002161
Accession ID Hg38

Library idBAMCTSS
CNhs12348 DRZ012126 DRZ013511
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.117
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.416
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.359
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.0106
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.0413
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.22
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.359
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.0353
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.0108
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0.552
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.457
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.269
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.155
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8-0.0522
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.565
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.319
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.155
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.155
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.359
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.155
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.359
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.497
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12348

Jaspar motifP-value
MA0002.20.0919
MA0003.10.425
MA0004.10.331
MA0006.10.676
MA0007.10.185
MA0009.10.0757
MA0014.10.485
MA0017.10.469
MA0018.23.14925e-6
MA0019.10.565
MA0024.13.0315e-6
MA0025.13.19086e-4
MA0027.10.811
MA0028.12.5951e-5
MA0029.10.613
MA0030.10.56
MA0031.10.875
MA0035.20.225
MA0038.10.0191
MA0039.20.00366
MA0040.10.691
MA0041.10.376
MA0042.10.574
MA0043.16.14439e-4
MA0046.10.814
MA0047.20.848
MA0048.10.288
MA0050.10.0837
MA0051.10.284
MA0052.10.147
MA0055.10.193
MA0057.10.802
MA0058.10.189
MA0059.10.8
MA0060.12.11951e-9
MA0061.10.209
MA0062.24.84364e-14
MA0065.20.584
MA0066.10.804
MA0067.10.0337
MA0068.10.431
MA0069.10.294
MA0070.10.159
MA0071.10.276
MA0072.10.869
MA0073.10.317
MA0074.10.308
MA0076.11.24933e-6
MA0077.10.154
MA0078.10.81
MA0079.20.38
MA0080.22.9034e-9
MA0081.10.00107
MA0083.10.0609
MA0084.10.96
MA0087.10.845
MA0088.10.146
MA0090.10.0284
MA0091.10.00303
MA0092.10.384
MA0093.10.317
MA0099.20.00887
MA0100.10.735
MA0101.10.0151
MA0102.20.468
MA0103.10.00458
MA0104.20.996
MA0105.10.63
MA0106.10.68
MA0107.10.0212
MA0108.20.511
MA0111.10.806
MA0112.20.316
MA0113.10.0208
MA0114.10.61
MA0115.10.625
MA0116.10.722
MA0117.10.142
MA0119.10.0525
MA0122.10.996
MA0124.10.263
MA0125.10.533
MA0131.10.219
MA0135.10.467
MA0136.13.55384e-13
MA0137.20.436
MA0138.20.623
MA0139.10.996
MA0140.10.535
MA0141.10.768
MA0142.10.818
MA0143.10.0586
MA0144.10.0944
MA0145.10.093
MA0146.10.52
MA0147.10.696
MA0148.10.951
MA0149.10.261
MA0150.10.0399
MA0152.10.00605
MA0153.10.112
MA0154.10.829
MA0155.10.561
MA0156.12.75907e-12
MA0157.10.918
MA0159.10.675
MA0160.10.793
MA0162.10.16
MA0163.10.277
MA0164.10.983
MA0258.10.67
MA0259.10.562



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12348

Novel motifP-value
10.646
100.566
1000.641
1010.803
1020.0402
1030.108
1040.475
1050.936
1060.174
1070.00636
1080.101
1090.572
110.828
1100.268
1110.724
1120.941
1130.417
1140.693
1150.148
1160.0618
1170.479
1180.402
1190.423
120.457
1200.11
1210.268
1220.145
1231.08628e-4
1240.856
1250.218
1260.548
1270.847
1280.0687
1290.368
130.178
1300.707
1310.413
1320.804
1330.148
1340.682
1350.945
1360.944
1370.0318
1380.932
1390.59
140.229
1400.159
1410.305
1420.856
1430.988
1440.335
1450.805
1460.691
1470.231
1480.541
1490.0754
150.865
1500.578
1510.876
1520.644
1530.219
1540.279
1550.033
1560.221
1570.0954
1580.191
1590.422
160.0883
1600.498
1610.619
1620.0962
1630.893
1640.204
1650.872
1660.0518
1670.274
1680.809
1690.149
170.705
180.0772
190.00482
20.286
200.423
210.206
220.136
230.0233
240.396
250.0989
260.442
270.666
280.119
290.804
30.962
300.415
310.188
322.46237e-7
330.597
340.409
350.789
360.0383
370.756
380.426
390.462
40.116
400.0235
410.193
420.416
430.406
440.295
450.682
460.429
470.424
480.471
490.795
50.873
500.935
510.614
520.419
530.0214
540.25
550.252
560.349
570.626
580.222
590.19
60.572
600.785
610.459
620.739
630.861
640.458
650.321
660.52
670.788
680.575
690.407
70.196
700.0623
710.758
720.428
730.802
740.284
750.267
760.71
770.772
780.257
790.135
80.5
800.321
810.291
820.667
830.274
840.184
850.0213
860.767
870.15
880.289
890.355
90.222
900.789
910.478
920.0199
930.579
940.176
950.47
960.741
970.313
980.584
990.00281



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12348


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000192 (smooth muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0002598 (bronchial smooth muscle cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002100 (trunk)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000466 (immaterial anatomical entity)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009569 (subdivision of trunk)
0005178 (thoracic cavity element)
0000072 (segment of respiratory tract)
0005177 (trunk region element)
0000464 (anatomical space)
0005181 (thoracic segment organ)
0010317 (germ layer / neural crest derived structure)
0007196 (tracheobronchial tree)
0002185 (bronchus)
0000065 (respiratory tract)
0001558 (lower respiratory tract)
0001004 (respiratory system)
0002224 (thoracic cavity)
0000915 (thoracic segment of trunk)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000167 (smooth muscle cell sample)
0000179 (human bronchial smooth muscle cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000514 (smooth muscle myoblast)

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