FFCP PHASE1:Hg19::chr2:20402634..20402650,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr2:20402634..20402650,- | |||
|coexpression_cluster_id=C572 | |coexpression_cluster_id=C572 | ||
|description=CAGE_peak_at_chr2:20402634..20402650,- | |description=CAGE_peak_at_chr2:20402634..20402650,- | ||
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|ontology_enrichment_celltype=CL:0000066!3.74e-18!254;CL:0000223!7.20e-14!59;CL:0002076!8.01e-13!43;CL:0002077!6.56e-10!33;CL:0002368!2.70e-09!13;CL:0002321!9.19e-09!248;CL:0000220!3.11e-08!246 | |ontology_enrichment_celltype=CL:0000066!3.74e-18!254;CL:0000223!7.20e-14!59;CL:0002076!8.01e-13!43;CL:0002077!6.56e-10!33;CL:0002368!2.70e-09!13;CL:0002321!9.19e-09!248;CL:0000220!3.11e-08!246 | ||
|ontology_enrichment_celltype_v019=CL:0000244;1.96e-20;4!CL:0000731;1.96e-20;4!CL:0002159;5.61e-16;14!CL:0002166;7.22e-15;3!CL:0002368;5.99e-13;13!CL:0002076;2.02e-12;42!CL:0000575;2.85e-10;2!CL:0002202;4.90e-09;9!CL:0002632;4.90e-09;9!CL:0002077;2.09e-08;34!CL:0000240;5.69e-08;6!CL:0000311;5.69e-08;6!CL:0000079;5.69e-08;6!CL:0000237;5.69e-08;6!CL:0002328;1.14e-07;3!CL:0002231;1.14e-07;3!CL:0002623;1.49e-07;3!CL:0000307;1.64e-07;3 | |ontology_enrichment_celltype_v019=CL:0000244;1.96e-20;4!CL:0000731;1.96e-20;4!CL:0002159;5.61e-16;14!CL:0002166;7.22e-15;3!CL:0002368;5.99e-13;13!CL:0002076;2.02e-12;42!CL:0000575;2.85e-10;2!CL:0002202;4.90e-09;9!CL:0002632;4.90e-09;9!CL:0002077;2.09e-08;34!CL:0000240;5.69e-08;6!CL:0000311;5.69e-08;6!CL:0000079;5.69e-08;6!CL:0000237;5.69e-08;6!CL:0002328;1.14e-07;3!CL:0002231;1.14e-07;3!CL:0002623;1.49e-07;3!CL:0000307;1.64e-07;3 | ||
|ontology_enrichment_celltype_v019_2=CL:0000244,2.59e-20,4;CL:0000731,2.59e-20,4;CL:0002076,1.12e-16,42;CL:0002159,3.15e-16,14;CL:0000223,1.50e-15,58;CL:0002166,5.70e-15,3;CL:0000066,6.24e-14,253;CL:0002368,5.63e-13,13;CL:0000575,1.32e-10,2;CL:0002077,5.90e-10,34;CL:0002202,5.01e-09,9;CL:0002632,5.01e-09,9;CL:0000240,4.76e-08,6;CL:0000311,4.76e-08,6;CL:0000079,4.76e-08,6;CL:0000237,4.76e-08,6;CL:0000036,4.76e-08,6;CL:0000357,4.76e-08,6;CL:0000114,4.76e-08,6;CL:0002321,5.80e-08,250;CL:0002328,1.07e-07,3;CL:0002231,1.15e-07,3;CL:0002623,1.64e-07,3;CL:0000068,1.81e-07,3;CL:0000069,1.81e-07,3;CL:0000307,1.81e-07,3;CL:0000377,1.81e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000223;2.50e-10;58!CL:0000357;5.69e-08;6!CL:0000114;5.69e-08;6!CL:0000377;1.64e-07;3 | |ontology_enrichment_development_v019=CL:0000223;2.50e-10;58!CL:0000357;5.69e-08;6!CL:0000114;5.69e-08;6!CL:0000377;1.64e-07;3 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:0060084;4.00e-07;3!DOID:127;4.00e-07;3 | |ontology_enrichment_disease_v019=DOID:0060084;4.00e-07;3!DOID:127;4.00e-07;3 | ||
|ontology_enrichment_disease_v019_2=DOID:0060084,2.92e-07,3;DOID:127,2.92e-07,3 | |||
|ontology_enrichment_uberon=UBERON:0004119!4.81e-12!169;UBERON:0000925!4.81e-12!169;UBERON:0006595!4.81e-12!169;UBERON:0001004!9.69e-10!72;UBERON:0003100!5.57e-08!41;UBERON:0000065!1.63e-07!53;UBERON:0001007!7.02e-07!155;UBERON:0001555!7.02e-07!155;UBERON:0007026!7.02e-07!155 | |ontology_enrichment_uberon=UBERON:0004119!4.81e-12!169;UBERON:0000925!4.81e-12!169;UBERON:0006595!4.81e-12!169;UBERON:0001004!9.69e-10!72;UBERON:0003100!5.57e-08!41;UBERON:0000065!1.63e-07!53;UBERON:0001007!7.02e-07!155;UBERON:0001555!7.02e-07!155;UBERON:0007026!7.02e-07!155 | ||
|ontology_enrichment_uberon_v019=UBERON:0000365;2.24e-16;5!UBERON:0005910;1.15e-13;6!UBERON:0001708;2.80e-11;4!UBERON:0008895;2.80e-11;4!UBERON:0000486;3.86e-10;12!UBERON:0011159;4.06e-09;5!UBERON:0004815;1.14e-07;3!UBERON:0002031;1.14e-07;3 | |ontology_enrichment_uberon_v019=UBERON:0000365;2.24e-16;5!UBERON:0005910;1.15e-13;6!UBERON:0001708;2.80e-11;4!UBERON:0008895;2.80e-11;4!UBERON:0000486;3.86e-10;12!UBERON:0011159;4.06e-09;5!UBERON:0004815;1.14e-07;3!UBERON:0002031;1.14e-07;3 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000365,2.79e-16,5;UBERON:0005910,1.38e-13,6;UBERON:0001708,2.35e-11,4;UBERON:0008895,2.35e-11,4;UBERON:0011159,3.54e-09,5;UBERON:0003102,7.31e-09,99;UBERON:0004119,1.36e-08,160;UBERON:0000925,1.36e-08,160;UBERON:0006595,1.36e-08,160;UBERON:0000033,4.05e-08,56;UBERON:0010188,1.01e-07,6;UBERON:0002539,1.01e-07,6;UBERON:0008816,1.01e-07,6;UBERON:0004815,1.07e-07,3;UBERON:0002031,1.07e-07,3;UBERON:0000153,3.88e-07,62;UBERON:0007811,3.88e-07,62;UBERON:0006554,5.93e-07,47;UBERON:0001008,8.90e-07,48 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,2.09340350391728,0.655324116390517,0,0,0,0,0.602694528023977,1.46062018077475,0.975865597581014,0,0.204000691244253,0,0.572471974262113,0.136874425072884,0.125542639594803,0,0.0821005894499457,0.0787107813136792,0,0,0,0.919421224478927,2.409647350226,3.69754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.795285947051099,0,0,0.443458794925128,0.175669571386252,0.327447688744282,1.82147644146271,1.85392221392215,0,0,0,0,0,0,0,0,0,0,0,0.275118041940067,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.872188104285069,0,0,0,0,0.354668382198357,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161872944368132,0.280901613404497,0,0.122834317311768,0,0,0.247266929278557,0,0,0.168336113954066,0,0,0,0,0,0,0.179389635688862,0,0,0.600182192168805,0,0,0,0.337552664482532,0,0,0.0920498986422993,0.323292113637624,0,0,0.339121184620975,1.35282597214308,0.818238361772504,0.573609190778008,0.365921118388786,0.132529768321485,0.116193942869518,0.10366105501537,0.252320850875628,0,0,0,0,0,0,0.236613600079688,0.337169380156203,0,0.220587945464788,0,0,0.269662616320329,0,0,0,0,0,0,3.80265104465493,3.9313088667105,0.590789906681404,0,0.122988438543114,0,2.63400684980701,0,5.12697759299317,1.574003567695,0,0,0,0,0,0,0,0,0,0,0,0,0,1.87467667973554,2.01578553838631,1.41775097242386,0.985143749731331,1.45316969256981,2.30029607499127,0,0,0,0,0,0,0,0,1.71072446022705,0.102827492703324,0,0,0,0.43596006883328,0.1466765716419,0.129271715757778,0,0,0,2.08014873822732,0,0,0.266422179016099,0,0.542621605391443,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.24900292158013,0.315404830067869,0.234282829985426,0,0,1.03473071292505,0,0,0.173767228936166,0,0,0,0,0,0.303127571446259,3.32870879020994,0.604780586659361,0.248107807818777,0,0,0.128139149255701,0,0,0,0.925258162815933,0.710246901252508,0,0,0.813472649219715,0,2.6065841139427,3.22283461275637,0,0,0,0,0.15403067420883,0,0,0,0,0,0,0,0,1.00337954770971,0,0,0,0,0,0.256450125116389,0,0,0.412164046590889,0,0,0,0.650060246036521,0,0,0,0,0,0,0,0.170453254832202,0,1.98341898433174,0.960950336825531,0.127612712494584,1.2138933702666,0.464845549297286,0,0,0,0,0,0.18532421910392,0,0,0,0,0.255897791311334,0,0,0,0.179872457583315,0,0.353437207037059,0,0,0,0,0,0,0.136499911407986,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0.0982490410131212,0,0.354761064070598,0,0,0,0.349934720244983,0.673554789078584,1.34060455107157,4.3556393944529,0.376575203107117,3.44404298136984,8.42357378338128,3.99087138183008,1.1486170010348,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.284136146806413,0.47748896947538,0,0.921482106297696,0,0,0,0,0.211125408127993,0,0,0,0,0.123084805461069,0,0,0.358042349351218,0,0.295930216910801,0,0,0,0,0,0.260427761085233,0,0,0.1137934482855,0,0,0,0,0,0,0,0,0,0,0,0,0.41827123283581,0.461701551022782,0,0.23056390438806,0.0897576444097721,0,0.638002319463839,0.0915975934018623,0,0,0,0,0,0,0,0,0,0.210998064528027,0.163232808159148,0,0,0,0.176915129006678,0,0,0,0,0,0,0,0,0.19566461893209,0,0.394584402849391,0,0,0,0,0,0,0,0,0,0,0.138674673013139,0.867798691675654,0,0,0,0.171986032471617,0,0,0.164230914106418,0.387956065953678,0,0,0.274083849293502,0,0,0,0,0.640358984218058,0,0,0,0,0.14405479798815,0.124252535565433,0.707082103850386,0.135904206073614,0,0,0,0,0,0,0,0,0,0,0,0.798716001995964,0,0,0,0,0,0.551482276150566,0.247247575143499,0.202210631562555,0.196854963029498,0,0,0,0.160753148465019,0.275078873194468,1.24632101408756,0,0,0,1.0063040627978,0.394028536495991,0.0524545881349981,0,0.179287339332845,0.383830394638891,0,0,0.25426853765475,1.62899880526114,0.864221491201268,1.63293680054705,0,0,0.681552087141687,0,0.293104467356165,0,0,0,0,0,0.106787412567695,0,0.414239055347196,0.992332043623902,0,0,0,0,0,0,0,0.157054096250234,0,0,0,0,0,0,0,0,0,0,0.705797459094515,0,0.144921028610825,0,0,0.554805861502613,0.189403005275089,0,0,0,0,0.15543720058278,0.147855149989634,0,0.449803112163605,0.465788870628778,0,0.265841714557995,0,0,0,0.406870733204662,0.363697318405119,0,0,0,0.800055529326307,0,0,0,0,0,0,0,0.231522474323834,0,0.71635536432595,0,0,0,0.38582807654183,0.168942440653073,0.256241518587947,0,0.303859956177382,0,0,0,0,0.327609848846413,0,0.211312123358627,0,0,0,0,0,0.979156554036111,0.622077260032973,0,0,0,0.109209638192014,0,0,0,0,0,0,0,0.352675943690684,0,0,0,0,0,0,0,0,0,0.0981477185010256,0,1.28400018965175,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127762427639595,0,0,0,0,0.620916591138472,0,0,0,0,0.354581522651905,0,0,0,0,0,0.215927591218621,0.47775168788705,0,0,0,0,0,2.07216164163037,2.21934020222135,0,0,0,0,0,0,0,0.955538938977433,0.559277158988962,0.196300467230486,0,0,0,0,0,0,0.198950775161368,0.118920090777569,0.22589216407792,0,0.150962843566674,0.231522474323834,0.437119121007915,0,0,0,0,0,0,0,0,0,0,0.357107877211315,0,0.240724100067505,0,0,0,0,0,0,0,0.3719950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| ||
|short_description=p@chr2:20402634..20402650,- | |short_description=p@chr2:20402634..20402650,- | ||
}} | }} |
Latest revision as of 05:13, 29 July 2015
Short description: | p@chr2:20402634..20402650, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr2:20402634..20402650, - |
Coexpression cluster: | C572_Urothelial_Prostate_Keratinocyte_Corneal_Mammary_Bronchial_Gingival |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
transitional epithelial cell | 2.59e-20 | 4 |
urothelial cell | 2.59e-20 | 4 |
endo-epithelial cell | 1.12e-16 | 42 |
general ecto-epithelial cell | 3.15e-16 | 14 |
endodermal cell | 1.50e-15 | 58 |
epithelial cell of Malassez | 5.70e-15 | 3 |
epithelial cell | 6.24e-14 | 253 |
respiratory epithelial cell | 5.63e-13 | 13 |
corneal epithelial cell | 1.32e-10 | 2 |
ecto-epithelial cell | 5.90e-10 | 34 |
epithelial cell of tracheobronchial tree | 5.01e-09 | 9 |
epithelial cell of lower respiratory tract | 5.01e-09 | 9 |
stratified squamous epithelial cell | 4.76e-08 | 6 |
keratin accumulating cell | 4.76e-08 | 6 |
stratified epithelial cell | 4.76e-08 | 6 |
keratinizing barrier epithelial cell | 4.76e-08 | 6 |
epithelial fate stem cell | 4.76e-08 | 6 |
stratified epithelial stem cell | 4.76e-08 | 6 |
surface ectodermal cell | 4.76e-08 | 6 |
embryonic cell | 5.80e-08 | 250 |
bronchial epithelial cell | 1.07e-07 | 3 |
epithelial cell of prostate | 1.15e-07 | 3 |
acinar cell of salivary gland | 1.64e-07 | 3 |
duct epithelial cell | 1.81e-07 | 3 |
branched duct epithelial cell | 1.81e-07 | 3 |
tracheal epithelial cell | 1.81e-07 | 3 |
tracheoblast | 1.81e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
urothelium | 2.79e-16 | 5 |
transitional epithelium | 1.38e-13 | 6 |
jaw skeleton | 2.35e-11 | 4 |
splanchnocranium | 2.35e-11 | 4 |
primary subdivision of cranial skeletal system | 3.54e-09 | 5 |
surface structure | 7.31e-09 | 99 |
endoderm-derived structure | 1.36e-08 | 160 |
endoderm | 1.36e-08 | 160 |
presumptive endoderm | 1.36e-08 | 160 |
head | 4.05e-08 | 56 |
protuberance | 1.01e-07 | 6 |
pharyngeal arch | 1.01e-07 | 6 |
embryonic head | 1.01e-07 | 6 |
lower respiratory tract epithelium | 1.07e-07 | 3 |
epithelium of bronchus | 1.07e-07 | 3 |
anterior region of body | 3.88e-07 | 62 |
craniocervical region | 3.88e-07 | 62 |
urinary system structure | 5.93e-07 | 47 |
renal system | 8.90e-07 | 48 |
Ontology term | p-value | n |
---|---|---|
cell type benign neoplasm | 2.92e-07 | 3 |
leiomyoma | 2.92e-07 | 3 |