FFCP PHASE1:Hg19::chr3:149531074..149531086,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=11342 | |EntrezGene=11342 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10057 | |HGNC=10057 | ||
|TSSclassifier=strong | |||
|UniProt=F8WEX6 | |UniProt=F8WEX6 | ||
|association_with_transcript=22bp_to_ENST00000467996_5end | |association_with_transcript=22bp_to_ENST00000467996_5end | ||
|cluster_id=chr3:149531074..149531086,+ | |||
|coexpression_cluster_id=C2 | |coexpression_cluster_id=C2 | ||
|description=CAGE_peak_3_at_RNF13_5end | |description=CAGE_peak_3_at_RNF13_5end | ||
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|ontology_enrichment_celltype=CL:0000766!4.47e-29!76;CL:0002009!3.74e-28!65;CL:0002194!1.33e-27!63;CL:0000576!1.33e-27!63;CL:0000040!1.33e-27!63;CL:0000559!1.33e-27!63;CL:0002057!2.05e-27!42;CL:0000860!1.70e-25!45;CL:0000557!5.19e-25!71;CL:0000738!1.26e-22!140;CL:0000839!2.41e-22!70;CL:0002087!1.15e-19!119;CL:0002031!6.10e-17!124;CL:0000763!9.09e-14!112;CL:0000049!9.09e-14!112;CL:0000037!6.24e-13!172;CL:0000566!6.24e-13!172;CL:0002032!1.04e-11!165;CL:0000837!1.04e-11!165;CL:0000988!1.05e-11!182 | |ontology_enrichment_celltype=CL:0000766!4.47e-29!76;CL:0002009!3.74e-28!65;CL:0002194!1.33e-27!63;CL:0000576!1.33e-27!63;CL:0000040!1.33e-27!63;CL:0000559!1.33e-27!63;CL:0002057!2.05e-27!42;CL:0000860!1.70e-25!45;CL:0000557!5.19e-25!71;CL:0000738!1.26e-22!140;CL:0000839!2.41e-22!70;CL:0002087!1.15e-19!119;CL:0002031!6.10e-17!124;CL:0000763!9.09e-14!112;CL:0000049!9.09e-14!112;CL:0000037!6.24e-13!172;CL:0000566!6.24e-13!172;CL:0002032!1.04e-11!165;CL:0000837!1.04e-11!165;CL:0000988!1.05e-11!182 | ||
|ontology_enrichment_celltype_v019=CL:0000860;2.63e-52;33!CL:0002057;2.63e-52;33!CL:0000473;8.70e-52;39!CL:0000234;8.70e-52;39!CL:0000576;1.04e-39;48!CL:0000766;6.80e-32;69!CL:0000763;5.84e-16;100!CL:0000094;4.10e-14;8!CL:0000738;4.78e-12;136!CL:0002087;1.22e-11;104!CL:0000235;3.20e-11;6!CL:0000081;8.96e-10;11!CL:0000775;3.21e-07;3!CL:0000988;3.22e-07;177 | |ontology_enrichment_celltype_v019=CL:0000860;2.63e-52;33!CL:0002057;2.63e-52;33!CL:0000473;8.70e-52;39!CL:0000234;8.70e-52;39!CL:0000576;1.04e-39;48!CL:0000766;6.80e-32;69!CL:0000763;5.84e-16;100!CL:0000094;4.10e-14;8!CL:0000738;4.78e-12;136!CL:0002087;1.22e-11;104!CL:0000235;3.20e-11;6!CL:0000081;8.96e-10;11!CL:0000775;3.21e-07;3!CL:0000988;3.22e-07;177 | ||
|ontology_enrichment_celltype_v019_2=CL:0000766,2.41e-79,72;CL:0000473,3.03e-74,48;CL:0000234,3.03e-74,48;CL:0002194,4.69e-73,59;CL:0000576,4.69e-73,59;CL:0000040,4.69e-73,59;CL:0000559,4.69e-73,59;CL:0002009,4.01e-70,61;CL:0000557,8.34e-65,67;CL:0000860,5.07e-64,42;CL:0002057,5.07e-64,42;CL:0000839,1.45e-63,66;CL:0000763,2.63e-48,108;CL:0000049,2.63e-48,108;CL:0000738,4.43e-47,136;CL:0002087,4.96e-42,115;CL:0002031,4.24e-38,120;CL:0000037,2.43e-35,168;CL:0002032,2.86e-35,161;CL:0000837,2.86e-35,161;CL:0000988,1.76e-32,177;CL:0000094,3.04e-14,8;CL:0000235,2.98e-11,6;CL:0000081,7.29e-10,11;CL:0000134,1.45e-09,354;CL:0002320,5.11e-09,361;CL:0002393,8.96e-09,9;CL:0002397,8.96e-09,9;CL:0000775,3.22e-07,3;CL:0000219,3.83e-07,386 | |||
|ontology_enrichment_development_v019=CL:0002057;1.46e-45;42!CL:0000049;1.04e-15;108 | |ontology_enrichment_development_v019=CL:0002057;1.46e-45;42!CL:0000049;1.04e-15;108 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!3.65e-25!102;UBERON:0003061!3.65e-25!102;UBERON:0002193!1.89e-21!112;UBERON:0002371!4.62e-19!80;UBERON:0001474!1.41e-18!86;UBERON:0004765!1.16e-15!101;UBERON:0001434!1.16e-15!101;UBERON:0007023!1.85e-14!115;UBERON:0002405!2.43e-11!115;UBERON:0001049!3.14e-09!57;UBERON:0005068!3.14e-09!57;UBERON:0006241!3.14e-09!57;UBERON:0007135!3.14e-09!57;UBERON:0000073!4.26e-09!94;UBERON:0001016!4.26e-09!94;UBERON:0001017!6.68e-09!82;UBERON:0005743!1.07e-08!86;UBERON:0000178!5.78e-08!15;UBERON:0000179!5.78e-08!15;UBERON:0000463!5.78e-08!15;UBERON:0002780!1.12e-07!41;UBERON:0001890!1.12e-07!41;UBERON:0006240!1.12e-07!41;UBERON:0002616!1.63e-07!59;UBERON:0002020!3.14e-07!34;UBERON:0003528!3.14e-07!34;UBERON:0001893!3.16e-07!34;UBERON:0003080!3.39e-07!42;UBERON:0000955!6.61e-07!69;UBERON:0006238!6.61e-07!69;UBERON:0002791!7.98e-07!33 | |ontology_enrichment_uberon=UBERON:0002390!3.65e-25!102;UBERON:0003061!3.65e-25!102;UBERON:0002193!1.89e-21!112;UBERON:0002371!4.62e-19!80;UBERON:0001474!1.41e-18!86;UBERON:0004765!1.16e-15!101;UBERON:0001434!1.16e-15!101;UBERON:0007023!1.85e-14!115;UBERON:0002405!2.43e-11!115;UBERON:0001049!3.14e-09!57;UBERON:0005068!3.14e-09!57;UBERON:0006241!3.14e-09!57;UBERON:0007135!3.14e-09!57;UBERON:0000073!4.26e-09!94;UBERON:0001016!4.26e-09!94;UBERON:0001017!6.68e-09!82;UBERON:0005743!1.07e-08!86;UBERON:0000178!5.78e-08!15;UBERON:0000179!5.78e-08!15;UBERON:0000463!5.78e-08!15;UBERON:0002780!1.12e-07!41;UBERON:0001890!1.12e-07!41;UBERON:0006240!1.12e-07!41;UBERON:0002616!1.63e-07!59;UBERON:0002020!3.14e-07!34;UBERON:0003528!3.14e-07!34;UBERON:0001893!3.16e-07!34;UBERON:0003080!3.39e-07!42;UBERON:0000955!6.61e-07!69;UBERON:0006238!6.61e-07!69;UBERON:0002791!7.98e-07!33 | ||
|ontology_enrichment_uberon_v019=UBERON:0000178;1.24e-09;15!UBERON:0000179;1.24e-09;15!UBERON:0000463;1.24e-09;15!UBERON:0002298;8.67e-09;6 | |ontology_enrichment_uberon_v019=UBERON:0000178;1.24e-09;15!UBERON:0000179;1.24e-09;15!UBERON:0000463;1.24e-09;15!UBERON:0002298;8.67e-09;6 | ||
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| ||
|short_description=p3@RNF13 | |short_description=p3@RNF13 | ||
}} | }} |
Latest revision as of 22:27, 15 September 2015
Short description: | p3@RNF13 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_RNF13_5end |
Coexpression cluster: | C2_Eosinophils_Neutrophils_CD14_Whole_Basophils_Peripheral_Mast |
Association with transcript: | 22bp_to_ENST00000467996_5end |
EntrezGene: | RNF13 |
HGNC: | 10057 |
UniProt: | F8WEX6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 2.41e-79 | 72 |
defensive cell | 3.03e-74 | 48 |
phagocyte | 3.03e-74 | 48 |
monopoietic cell | 4.69e-73 | 59 |
monocyte | 4.69e-73 | 59 |
monoblast | 4.69e-73 | 59 |
promonocyte | 4.69e-73 | 59 |
macrophage dendritic cell progenitor | 4.01e-70 | 61 |
granulocyte monocyte progenitor cell | 8.34e-65 | 67 |
classical monocyte | 5.07e-64 | 42 |
CD14-positive, CD16-negative classical monocyte | 5.07e-64 | 42 |
myeloid lineage restricted progenitor cell | 1.45e-63 | 66 |
myeloid cell | 2.63e-48 | 108 |
common myeloid progenitor | 2.63e-48 | 108 |
leukocyte | 4.43e-47 | 136 |
nongranular leukocyte | 4.96e-42 | 115 |
hematopoietic lineage restricted progenitor cell | 4.24e-38 | 120 |
hematopoietic stem cell | 2.43e-35 | 168 |
hematopoietic oligopotent progenitor cell | 2.86e-35 | 161 |
hematopoietic multipotent progenitor cell | 2.86e-35 | 161 |
hematopoietic cell | 1.76e-32 | 177 |
granulocyte | 3.04e-14 | 8 |
macrophage | 2.98e-11 | 6 |
blood cell | 7.29e-10 | 11 |
mesenchymal cell | 1.45e-09 | 354 |
connective tissue cell | 5.11e-09 | 361 |
intermediate monocyte | 8.96e-09 | 9 |
CD14-positive, CD16-positive monocyte | 8.96e-09 | 9 |
neutrophil | 3.22e-07 | 3 |
motile cell | 3.83e-07 | 386 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 1.27e-58 | 98 |
blood island | 1.27e-58 | 98 |
bone marrow | 3.85e-55 | 76 |
hemolymphoid system | 2.94e-53 | 108 |
bone element | 7.12e-50 | 82 |
skeletal element | 6.03e-44 | 90 |
immune system | 8.65e-44 | 93 |
skeletal system | 4.80e-41 | 100 |
lateral plate mesoderm | 4.06e-21 | 203 |
musculoskeletal system | 9.18e-19 | 167 |
blood | 1.04e-09 | 15 |
haemolymphatic fluid | 1.04e-09 | 15 |
organism substance | 1.04e-09 | 15 |
mesoderm | 2.37e-09 | 315 |
mesoderm-derived structure | 2.37e-09 | 315 |
presumptive mesoderm | 2.37e-09 | 315 |
adult organism | 4.64e-09 | 114 |
brainstem | 9.27e-09 | 6 |
connective tissue | 2.77e-08 | 371 |
germ layer | 4.47e-07 | 560 |
germ layer / neural crest | 4.47e-07 | 560 |
embryonic tissue | 4.47e-07 | 560 |
presumptive structure | 4.47e-07 | 560 |
germ layer / neural crest derived structure | 4.47e-07 | 560 |
epiblast (generic) | 4.47e-07 | 560 |
posterior neural tube | 6.73e-07 | 15 |
chordal neural plate | 6.73e-07 | 15 |
embryonic structure | 7.34e-07 | 564 |