FF:10493-107B7: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00005627 | |||
|accession_numbers=CAGE;DRX007936;DRR008808;DRZ000233;DRZ001618;DRZ011583;DRZ012968 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002369,UBERON:0002100,UBERON:0001851,UBERON:0001235,UBERON:0000064,UBERON:0010314,UBERON:0000062,UBERON:0000475,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009569,UBERON:0002368,UBERON:0005177,UBERON:0005172,UBERON:0002530,UBERON:0006858,UBERON:0010317,UBERON:0005173,UBERON:0002417,UBERON:0000949,UBERON:0000916 | |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002369,UBERON:0002100,UBERON:0001851,UBERON:0001235,UBERON:0000064,UBERON:0010314,UBERON:0000062,UBERON:0000475,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009569,UBERON:0002368,UBERON:0005177,UBERON:0005172,UBERON:0002530,UBERON:0006858,UBERON:0010317,UBERON:0005173,UBERON:0002417,UBERON:0000949,UBERON:0000916 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000151,CL:0000066,CL:0002371,CL:0000076,CL:0000213,CL:0002078,CL:0000150,CL:0000163,CL:0000215,CL:0000174,CL:0000255,CL:0000077,CL:0002097 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000151,CL:0000066,CL:0002371,CL:0000076,CL:0000213,CL:0002078,CL:0000150,CL:0000163,CL:0000215,CL:0000174,CL:0000255,CL:0000077,CL:0002097 | ||
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|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr7:63505799..63505904,+!p1@ZNF727!1.43!26.00!ZNF727;;chr17:17726907..17726958,-!p2@SREBF1!1.38!137.15!SREBF1;;chr9:96717629..96717644,-!p1@BARX1!1.38!23.11!BARX1;;chr6:10412600..10412637,-!p1@TFAP2A!1.36!36.41!TFAP2A;;chr6:10415276..10415341,-!p2@TFAP2A!1.33!24.85!TFAP2A;;chr19:22193731..22193751,-!p1@ZNF208!1.33!20.61!ZNF208;;chr6:29648890..29648944,-!p1@ZFP57!1.30!18.88!ZFP57;;chr19:9609272..9609297,-!p1@ZNF560!1.28!17.91!ZNF560;;chr5:2751762..2751784,-!p1@IRX2!1.27!17.72!IRX2;;chr8:11561684..11561751,+!p1@GATA4!1.26!17.34!GATA4;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.26!17.14!ZBED1;;chr7:35293685..35293718,-!p1@TBX20!1.20!14.83!TBX20;;chr10:8096772..8096787,+!p2@GATA3!1.19!16.95!GATA3;;chr6:10412392..10412409,-!p4@TFAP2A!1.16!15.41!TFAP2A;;chr10:8096631..8096660,+!p1@GATA3!1.13!15.22!GATA3;;chr6:126240380..126240430,+!p2@NCOA7!1.11!31.01!NCOA7;;chr19:37464453..37464515,+!p4@ZNF568!1.11!11.75!ZNF568;;chr11:32457075..32457095,-!p1@WT1!1.09!11.36!WT1;;chr11:46299199..46299233,+!p1@CREB3L1!1.08!57.02!CREB3L1;;chr19:52956798..52956843,+!p1@ZNF578!1.05!20.80!ZNF578;;chr19:22398550..22398579,-!p@chr19:22398550..22398579,-!1.03!9.82!ZNF676;;chr15:83953397..83953425,-!p1@BNC1!1.02!10.79!BNC1;;chr4:188916918..188916942,+!p1@ZFP42!1.02!9.44!ZFP42;;chr11:65686732..65686756,+!p2@DRAP1!1.01!39.49!DRAP1;;chr16:86544113..86544145,+!p1@FOXF1!1.00!11.36!FOXF1;;chr7:26191809..26191890,+!p1@NFE2L3!0.98!43.34!NFE2L3;;chr5:178368186..178368238,+!p1@ZNF454!0.92!13.48!ZNF454;;chr11:65667884..65667895,-!p2@FOSL1!0.90!28.32!FOSL1;;chr6:126240356..126240379,+!p7@NCOA7!0.90!8.67!NCOA7;;chr1:25256756..25256774,-!p1@RUNX3!0.89!13.10!RUNX3;;chr11:32457103..32457123,-!p3@WT1!0.88!6.55!WT1;;chr17:7197911..7197964,-!p1@YBX2!0.88!6.55!YBX2;;chr19:45908292..45908374,-!p1@PPP1R13L!0.87!60.10!PPP1R13L;;chr19:53496768..53496799,-!p1@ZNF702P!0.86!10.02!ZNF702P;;chr6:85473156..85473210,-!p2@TBX18!0.86!7.70!TBX18;;chr19:58545369..58545404,+!p2@ZSCAN1!0.86!6.16!ZSCAN1;;chr4:299227..299272,-!p1@ZNF732!0.86!6.16!ZNF732;;chr8:67525473..67525518,-!p1@MYBL1!0.85!14.45!MYBL1;;chr1:203764633..203764674,+!p2@ZC3H11A!0.85!10.21!ZC3H11A;;chr11:65667846..65667868,-!p1@FOSL1!0.84!166.04!FOSL1;;chr15:67418047..67418093,+!p4@SMAD3!0.84!7.70!SMAD3;;chr20:42295713..42295738,+!p2@MYBL2!0.82!35.63!MYBL2;;chr19:53636125..53636178,-!p1@ZNF415!0.82!16.76!ZNF415;;chr5:72744445..72744466,-!p2@FOXD1!0.82!9.63!FOXD1;;chr4:174450089..174450153,-!p2@HAND2!0.82!5.59!HAND2;;chr19:9609247..9609262,-!p2@ZNF560!0.82!5.59!ZNF560;;chr17:46682321..46682362,-!p1@HOXB6!0.82!5.59!HOXB6;;chr19:22605136..22605154,-!p1@ZNF98!0.82!5.59!ZNF98;;chr19:52598958..52599026,-!p1@ZNF841!0.81!56.05!ZNF841;;chr12:54772960..54773015,-!p3@ZNF385A!0.81!28.70!ZNF385A;;chr1:44513995..44514031,+!p1@KLF17!0.81!5.39!KLF17;;chr3:128206762..128206781,-!p2@GATA2!0.80!36.02!GATA2;;chr11:65686802..65686818,+!p6@DRAP1!0.80!9.63!DRAP1;;chr5:134369905..134369972,-!p1@PITX1!0.79!8.28!PITX1;;chr8:67525443..67525459,-!p2@MYBL1!0.79!7.90!MYBL1;;chr6:10415484..10415508,-!p3@TFAP2A!0.79!5.20!TFAP2A;;chr20:2673383..2673441,+!p1@EBF4!0.78!8.28!EBF4;;chr6:126240442..126240459,+!p4@NCOA7!0.78!6.55!NCOA7;;chr7:5111723..5111807,+!p2@RBAK!0.78!5.01!RBAK;;chr8:55370487..55370503,+!p1@SOX17!0.78!5.01!SOX17;;chr9:126774018..126774055,+!p1@LHX2!0.78!5.01!LHX2;;chr19:56879653..56879743,+!p1@ZNF542!0.77!39.68!ZNF542;;chr20:50721803..50721857,-!p2@ZFP64!0.77!8.09!ZFP64;;chr19:38042240..38042309,+!p2@ZNF540!0.77!7.70!ZNF540;;chr12:54447599..54447630,+!p3@HOXC4!0.77!6.16!HOXC4;;chr19:56879534..56879615,+!p3@ZNF542!0.76!7.70!ZNF542;;chr15:67418119..67418162,+!p5@SMAD3!0.76!5.39!SMAD3;;chr6:10412576..10412599,-!p5@TFAP2A!0.76!4.82!TFAP2A;;chr7:27153454..27153469,-!p2@HOXA3!0.76!4.82!HOXA3;;chr12:54378923..54378966,+!p1@HOXC10!0.76!4.82!HOXC10;;chr8:106330656..106330684,+!p1@ZFPM2!0.75!13.10!ZFPM2;;chr19:58629742..58629787,-!p2@ZSCAN18!0.75!4.62!ZSCAN18;;chr3:69811882..69811898,+!p6@MITF!0.73!4.43!MITF;;chr19:58545454..58545498,+!p1@ZSCAN1!0.72!4.24!ZSCAN1;;chr3:141868357..141868393,-!p3@TFDP2!0.71!30.43!TFDP2;;chr20:55204351..55204377,+!p1@TFAP2C!0.71!5.39!TFAP2C;;chr19:53758058..53758088,-!p2@ZNF677!0.70!14.64!ZNF677;;chr19:57352109..57352153,-!p2@ZIM2!0.70!4.05!ZIM2;;chr17:46687959..46688007,-!p2@HOXB7!0.69!5.59!HOXB7;;chr19:2867325..2867348,+!p1@ZNF556!0.69!3.85!ZNF556;;chr20:42295745..42295765,+!p1@MYBL2!0.68!71.85!MYBL2;;chr8:67525524..67525543,-!p3@MYBL1!0.68!6.74!MYBL1;;chr19:45260775..45260838,+!p5@BCL3!0.68!5.20!BCL3;;chr7:19157043..19157088,-!p2@TWIST1!0.67!10.21!TWIST1;;chr11:615570..615721,-!p2@IRF7!0.67!7.90!IRF7;;chr19:22817119..22817145,+!p1@ZNF492!0.67!6.55!ZNF492;;chr19:22966925..22966958,-!p1@ZNF99!0.67!3.66!ZNF99;;chr2:176969228..176969260,+!p1@HOXD11!0.67!3.66!HOXD11;;chr2:63277948..63277974,+!p1@OTX1!0.67!3.66!OTX1;;chr9:124976185..124976212,-!p4@LHX6!0.67!3.66!LHX6;;chr9:96717678..96717689,-!p2@BARX1!0.67!3.66!BARX1;;chr16:30537839..30537929,-!p1@ZNF768!0.65!25.04!ZNF768;;chr5:178157651..178157689,-!p1@ZNF354A!0.65!16.37!ZNF354A;;chr20:55205825..55205847,+!p2@TFAP2C!0.65!3.47!TFAP2C;;chr12:54380404..54380433,+!p3@HOXC10!0.65!3.47!HOXC10;;chr17:46703687..46703740,-!p1@HOXB9!0.65!3.47!HOXB9;;chr8:60031762..60031803,-!p3@TOX!0.64!5.20!TOX;;chr17:17726892..17726903,-!p6@SREBF1!0.64!3.85!SREBF1;;chr19:19729477..19729542,-!p1@PBX4!0.63!7.70!PBX4;;chr20:50808667..50808729,-!p3@ZFP64!0.63!6.93!ZFP64;;chr1:41827095..41827155,+!p1@FOXO6!0.63!4.62!FOXO6;;chr5:142780237..142780261,-!p7@NR3C1!0.63!3.27!NR3C1;;chr17:17740287..17740307,-!p1@SREBF1!0.62!99.97!SREBF1;;chr7:27135591..27135658,-!p1@HOXA1!0.62!6.74!HOXA1;;chr10:8095593..8095625,+!p3@GATA3!0.62!3.85!GATA3;;chr5:178286925..178287007,+!p1@ZNF354B!0.61!20.61!ZNF354B;;chr16:4366021..4366045,+!p@chr16:4366021..4366045,+!0.61!17.34!GLIS2;;chr19:22235279..22235301,+!p1@ZNF257!0.61!6.36!ZNF257;;chr7:19157248..19157268,-!p1@TWIST1!0.60!9.44!TWIST1;;chr9:114287433..114287513,+!p1@ZNF483!0.60!8.86!ZNF483;;chr8:28347737..28347785,-!p1@FBXO16,p2@ZNF395!0.60!7.13!ZNF395;;chr11:65686776..65686787,+!p9@DRAP1!0.60!3.66!DRAP1;;chr17:46622229..46622257,-!p6@HOXB2!0.59!3.47!HOXB2;;chr17:46622440..46622477,-!p5@HOXB2!0.59!3.27!HOXB2;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!0.59!2.89!PEG3;;chr18:53068911..53068935,-!p4@TCF4!0.58!3.27!TCF4;;chr17:70117153..70117174,+!p1@SOX9!0.57!34.67!SOX9;;chr3:150126759..150126784,+!p2@TSC22D2!0.57!14.83!TSC22D2;;chr11:65430554..65430579,-!p3@RELA!0.57!8.09!RELA;;chr2:46524474..46524491,+!p4@EPAS1!0.57!7.51!EPAS1;;chr3:5021268..5021282,+!p4@BHLHE40!0.57!6.36!BHLHE40;;chr10:8100691..8100732,+!p5@GATA3!0.57!2.70!GATA3;;chr12:54393880..54393962,+!p1@HOXC9!0.57!2.70!HOXC9;;chr21:38071430..38071456,+!p1@SIM2!0.57!2.70!SIM2;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!0.57!2.70!SEBOX;;chr5:142780189..142780223,-!p6@NR3C1!0.57!2.70!NR3C1;;chr9:14314131..14314147,-!p2@NFIB!0.56!18.11!NFIB;;chr19:38146320..38146401,-!p1@ZFP30!0.56!17.53!ZFP30;;chr16:3493446..3493510,-!p1@ZNF597!0.56!14.25!ZNF597;;chr3:12329358..12329393,+!p3@PPARG!0.56!7.51!PPARG;;chr11:8102749..8102769,+!p2@TUB!0.56!5.78!TUB;;chr19:37464063..37464127,+!p2@ZNF568!0.56!3.66!ZNF568;;chr22:22863052..22863133,-!p1@ZNF280B!0.55!7.90!ZNF280B;;chr2:200323414..200323455,-!p1@SATB2!0.55!6.36!SATB2;;chr3:129158854..129158883,-!p3@MBD4!0.54!15.22!MBD4;;chr1:33004996..33005017,+!p3@ZBTB8A!0.54!3.66!ZBTB8A;;chr19:22398533..22398542,-!p@chr19:22398533..22398542,-!0.54!2.50!ZNF676;;chr12:54380036..54380091,+!p4@HOXC10!0.54!2.50!HOXC10;;chr12:54447637..54447659,+!p4@HOXC4!0.54!2.50!HOXC4;;chr5:2751785..2751808,-!p2@IRX2!0.54!2.50!IRX2;;chr2:238600789..238600925,+!p1@LRRFIP1!0.53!61.45!LRRFIP1;;chr12:124873357..124873401,-!p1@NCOR2!0.53!35.63!NCOR2;;chr4:1873011..1873063,+!p2@WHSC1!0.52!9.63!WHSC1;;chr19:53496806..53496848,-!p2@ZNF702P!0.52!3.85!ZNF702P;;chr16:54320158..54320200,-!p5@IRX3!0.52!3.66!IRX3;;chr9:110251836..110251887,-!p4@KLF4!0.52!3.27!KLF4;;chr5:134369879..134369898,-!p2@PITX1!0.52!2.31!PITX1;;chr7:35293665..35293680,-!p2@TBX20!0.52!2.31!TBX20;;chr19:56879625..56879636,+!p5@ZNF542!0.52!2.31!ZNF542;;chr11:65668011..65668020,-!p3@FOSL1!0.52!2.31!FOSL1;;chr12:54447219..54447237,+!p6@HOXC4!0.52!2.31!HOXC4;;chr17:26697304..26697335,-!p1@SEBOX,p1@VTN!0.52!2.31!SEBOX;;chr1:26496382..26496457,+!p1@ZNF593!0.51!176.63!ZNF593;;chr5:72744594..72744609,-!p1@FOXD1!0.51!12.91!FOXD1;;chr14:61116183..61116208,-!p1@SIX1!0.51!10.59!SIX1;;chr19:44331493..44331552,+!p1@ZNF283!0.51!10.02!ZNF283;;chr8:106330696..106330719,+!p2@ZFPM2!0.51!3.08!ZFPM2;;chrX:128657457..128657475,-!p1@SMARCA1!0.50!32.94!SMARCA1;;chr15:67357924..67357952,+!p2@SMAD3!0.50!18.68!SMAD3;;chr2:46524897..46524911,+!p2@EPAS1!0.50!7.51!EPAS1;;chr5:150284532..150284549,-!p1@ZNF300!0.50!5.39!ZNF300;;chr17:46688334..46688385,-!p1@HOXB7!0.50!3.47!HOXB7;;chr6:44233252..44233296,-!p1@NFKBIE!0.49!27.16!NFKBIE;;chr1:935467..935484,-!p1@HES4!0.49!11.75!HES4;;chr19:12203100..12203132,+!p1@ZNF788!0.49!5.01!ZNF788;;chr5:174151553..174151610,+!p1@MSX2!0.49!4.05!MSX2;;chr8:28243785..28243799,-!p6@ZNF395!0.49!2.70!ZNF395;;chr6:10412477..10412490,-!p10@TFAP2A!0.49!2.12!TFAP2A;;chr6:10415263..10415274,-!p8@TFAP2A!0.49!2.12!TFAP2A;;chr19:48773337..48773339,+!p2@ZNF114!0.49!2.12!ZNF114;;chr10:64134045..64134083,+!p3@ZNF365!0.49!2.12!ZNF365;;chr3:12329339..12329356,+!p5@PPARG!0.49!2.12!PPARG;;chr4:174451370..174451387,-!p1@HAND2!0.49!2.12!HAND2;;chr8:37553292..37553317,+!p1@ZNF703!0.48!64.53!ZNF703;;chr19:53935221..53935258,+!p1@ZNF761!0.48!27.54!ZNF761;;chr7:149470641..149470694,-!p1@ZNF467!0.48!11.94!ZNF467;;chr3:44771092..44771160,+!p1@ZNF501!0.48!10.59!ZNF501;;chr3:5021191..5021202,+!p3@BHLHE40!0.48!6.74!BHLHE40;;chr5:178157700..178157734,-!p3@ZNF354A!0.48!5.01!ZNF354A;;chr6:27356527..27356557,+!p2@ZNF391!0.48!3.08!ZNF391;;chr4:4291861..4291913,-!p1@LYAR!0.47!61.45!LYAR;;chr7:139762641..139762768,-!p1@PARP12!0.47!36.60!PARP12;;chr7:137686824..137686865,-!p2@CREB3L2!0.47!33.52!CREB3L2;;chr5:56247935..56247959,-!p1@MIER3!0.47!13.87!MIE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| |expression_enrichment_score=chr7:63505799..63505904,+!p1@ZNF727!1.43!26.00!ZNF727;;chr17:17726907..17726958,-!p2@SREBF1!1.38!137.15!SREBF1;;chr9:96717629..96717644,-!p1@BARX1!1.38!23.11!BARX1;;chr6:10412600..10412637,-!p1@TFAP2A!1.36!36.41!TFAP2A;;chr6:10415276..10415341,-!p2@TFAP2A!1.33!24.85!TFAP2A;;chr19:22193731..22193751,-!p1@ZNF208!1.33!20.61!ZNF208;;chr6:29648890..29648944,-!p1@ZFP57!1.30!18.88!ZFP57;;chr19:9609272..9609297,-!p1@ZNF560!1.28!17.91!ZNF560;;chr5:2751762..2751784,-!p1@IRX2!1.27!17.72!IRX2;;chr8:11561684..11561751,+!p1@GATA4!1.26!17.34!GATA4;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.26!17.14!ZBED1;;chr7:35293685..35293718,-!p1@TBX20!1.20!14.83!TBX20;;chr10:8096772..8096787,+!p2@GATA3!1.19!16.95!GATA3;;chr6:10412392..10412409,-!p4@TFAP2A!1.16!15.41!TFAP2A;;chr10:8096631..8096660,+!p1@GATA3!1.13!15.22!GATA3;;chr6:126240380..126240430,+!p2@NCOA7!1.11!31.01!NCOA7;;chr19:37464453..37464515,+!p4@ZNF568!1.11!11.75!ZNF568;;chr11:32457075..32457095,-!p1@WT1!1.09!11.36!WT1;;chr11:46299199..46299233,+!p1@CREB3L1!1.08!57.02!CREB3L1;;chr19:52956798..52956843,+!p1@ZNF578!1.05!20.80!ZNF578;;chr19:22398550..22398579,-!p@chr19:22398550..22398579,-!1.03!9.82!ZNF676;;chr15:83953397..83953425,-!p1@BNC1!1.02!10.79!BNC1;;chr4:188916918..188916942,+!p1@ZFP42!1.02!9.44!ZFP42;;chr11:65686732..65686756,+!p2@DRAP1!1.01!39.49!DRAP1;;chr16:86544113..86544145,+!p1@FOXF1!1.00!11.36!FOXF1;;chr7:26191809..26191890,+!p1@NFE2L3!0.98!43.34!NFE2L3;;chr5:178368186..178368238,+!p1@ZNF454!0.92!13.48!ZNF454;;chr11:65667884..65667895,-!p2@FOSL1!0.90!28.32!FOSL1;;chr6:126240356..126240379,+!p7@NCOA7!0.90!8.67!NCOA7;;chr1:25256756..25256774,-!p1@RUNX3!0.89!13.10!RUNX3;;chr11:32457103..32457123,-!p3@WT1!0.88!6.55!WT1;;chr17:7197911..7197964,-!p1@YBX2!0.88!6.55!YBX2;;chr19:45908292..45908374,-!p1@PPP1R13L!0.87!60.10!PPP1R13L;;chr19:53496768..53496799,-!p1@ZNF702P!0.86!10.02!ZNF702P;;chr6:85473156..85473210,-!p2@TBX18!0.86!7.70!TBX18;;chr19:58545369..58545404,+!p2@ZSCAN1!0.86!6.16!ZSCAN1;;chr4:299227..299272,-!p1@ZNF732!0.86!6.16!ZNF732;;chr8:67525473..67525518,-!p1@MYBL1!0.85!14.45!MYBL1;;chr1:203764633..203764674,+!p2@ZC3H11A!0.85!10.21!ZC3H11A;;chr11:65667846..65667868,-!p1@FOSL1!0.84!166.04!FOSL1;;chr15:67418047..67418093,+!p4@SMAD3!0.84!7.70!SMAD3;;chr20:42295713..42295738,+!p2@MYBL2!0.82!35.63!MYBL2;;chr19:53636125..53636178,-!p1@ZNF415!0.82!16.76!ZNF415;;chr5:72744445..72744466,-!p2@FOXD1!0.82!9.63!FOXD1;;chr4:174450089..174450153,-!p2@HAND2!0.82!5.59!HAND2;;chr19:9609247..9609262,-!p2@ZNF560!0.82!5.59!ZNF560;;chr17:46682321..46682362,-!p1@HOXB6!0.82!5.59!HOXB6;;chr19:22605136..22605154,-!p1@ZNF98!0.82!5.59!ZNF98;;chr19:52598958..52599026,-!p1@ZNF841!0.81!56.05!ZNF841;;chr12:54772960..54773015,-!p3@ZNF385A!0.81!28.70!ZNF385A;;chr1:44513995..44514031,+!p1@KLF17!0.81!5.39!KLF17;;chr3:128206762..128206781,-!p2@GATA2!0.80!36.02!GATA2;;chr11:65686802..65686818,+!p6@DRAP1!0.80!9.63!DRAP1;;chr5:134369905..134369972,-!p1@PITX1!0.79!8.28!PITX1;;chr8:67525443..67525459,-!p2@MYBL1!0.79!7.90!MYBL1;;chr6:10415484..10415508,-!p3@TFAP2A!0.79!5.20!TFAP2A;;chr20:2673383..2673441,+!p1@EBF4!0.78!8.28!EBF4;;chr6:126240442..126240459,+!p4@NCOA7!0.78!6.55!NCOA7;;chr7:5111723..5111807,+!p2@RBAK!0.78!5.01!RBAK;;chr8:55370487..55370503,+!p1@SOX17!0.78!5.01!SOX17;;chr9:126774018..126774055,+!p1@LHX2!0.78!5.01!LHX2;;chr19:56879653..56879743,+!p1@ZNF542!0.77!39.68!ZNF542;;chr20:50721803..50721857,-!p2@ZFP64!0.77!8.09!ZFP64;;chr19:38042240..38042309,+!p2@ZNF540!0.77!7.70!ZNF540;;chr12:54447599..54447630,+!p3@HOXC4!0.77!6.16!HOXC4;;chr19:56879534..56879615,+!p3@ZNF542!0.76!7.70!ZNF542;;chr15:67418119..67418162,+!p5@SMAD3!0.76!5.39!SMAD3;;chr6:10412576..10412599,-!p5@TFAP2A!0.76!4.82!TFAP2A;;chr7:27153454..27153469,-!p2@HOXA3!0.76!4.82!HOXA3;;chr12:54378923..54378966,+!p1@HOXC10!0.76!4.82!HOXC10;;chr8:106330656..106330684,+!p1@ZFPM2!0.75!13.10!ZFPM2;;chr19:58629742..58629787,-!p2@ZSCAN18!0.75!4.62!ZSCAN18;;chr3:69811882..69811898,+!p6@MITF!0.73!4.43!MITF;;chr19:58545454..58545498,+!p1@ZSCAN1!0.72!4.24!ZSCAN1;;chr3:141868357..141868393,-!p3@TFDP2!0.71!30.43!TFDP2;;chr20:55204351..55204377,+!p1@TFAP2C!0.71!5.39!TFAP2C;;chr19:53758058..53758088,-!p2@ZNF677!0.70!14.64!ZNF677;;chr19:57352109..57352153,-!p2@ZIM2!0.70!4.05!ZIM2;;chr17:46687959..46688007,-!p2@HOXB7!0.69!5.59!HOXB7;;chr19:2867325..2867348,+!p1@ZNF556!0.69!3.85!ZNF556;;chr20:42295745..42295765,+!p1@MYBL2!0.68!71.85!MYBL2;;chr8:67525524..67525543,-!p3@MYBL1!0.68!6.74!MYBL1;;chr19:45260775..45260838,+!p5@BCL3!0.68!5.20!BCL3;;chr7:19157043..19157088,-!p2@TWIST1!0.67!10.21!TWIST1;;chr11:615570..615721,-!p2@IRF7!0.67!7.90!IRF7;;chr19:22817119..22817145,+!p1@ZNF492!0.67!6.55!ZNF492;;chr19:22966925..22966958,-!p1@ZNF99!0.67!3.66!ZNF99;;chr2:176969228..176969260,+!p1@HOXD11!0.67!3.66!HOXD11;;chr2:63277948..63277974,+!p1@OTX1!0.67!3.66!OTX1;;chr9:124976185..124976212,-!p4@LHX6!0.67!3.66!LHX6;;chr9:96717678..96717689,-!p2@BARX1!0.67!3.66!BARX1;;chr16:30537839..30537929,-!p1@ZNF768!0.65!25.04!ZNF768;;chr5:178157651..178157689,-!p1@ZNF354A!0.65!16.37!ZNF354A;;chr20:55205825..55205847,+!p2@TFAP2C!0.65!3.47!TFAP2C;;chr12:54380404..54380433,+!p3@HOXC10!0.65!3.47!HOXC10;;chr17:46703687..46703740,-!p1@HOXB9!0.65!3.47!HOXB9;;chr8:60031762..60031803,-!p3@TOX!0.64!5.20!TOX;;chr17:17726892..17726903,-!p6@SREBF1!0.64!3.85!SREBF1;;chr19:19729477..19729542,-!p1@PBX4!0.63!7.70!PBX4;;chr20:50808667..50808729,-!p3@ZFP64!0.63!6.93!ZFP64;;chr1:41827095..41827155,+!p1@FOXO6!0.63!4.62!FOXO6;;chr5:142780237..142780261,-!p7@NR3C1!0.63!3.27!NR3C1;;chr17:17740287..17740307,-!p1@SREBF1!0.62!99.97!SREBF1;;chr7:27135591..27135658,-!p1@HOXA1!0.62!6.74!HOXA1;;chr10:8095593..8095625,+!p3@GATA3!0.62!3.85!GATA3;;chr5:178286925..178287007,+!p1@ZNF354B!0.61!20.61!ZNF354B;;chr16:4366021..4366045,+!p@chr16:4366021..4366045,+!0.61!17.34!GLIS2;;chr19:22235279..22235301,+!p1@ZNF257!0.61!6.36!ZNF257;;chr7:19157248..19157268,-!p1@TWIST1!0.60!9.44!TWIST1;;chr9:114287433..114287513,+!p1@ZNF483!0.60!8.86!ZNF483;;chr8:28347737..28347785,-!p1@FBXO16,p2@ZNF395!0.60!7.13!ZNF395;;chr11:65686776..65686787,+!p9@DRAP1!0.60!3.66!DRAP1;;chr17:46622229..46622257,-!p6@HOXB2!0.59!3.47!HOXB2;;chr17:46622440..46622477,-!p5@HOXB2!0.59!3.27!HOXB2;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!0.59!2.89!PEG3;;chr18:53068911..53068935,-!p4@TCF4!0.58!3.27!TCF4;;chr17:70117153..70117174,+!p1@SOX9!0.57!34.67!SOX9;;chr3:150126759..150126784,+!p2@TSC22D2!0.57!14.83!TSC22D2;;chr11:65430554..65430579,-!p3@RELA!0.57!8.09!RELA;;chr2:46524474..46524491,+!p4@EPAS1!0.57!7.51!EPAS1;;chr3:5021268..5021282,+!p4@BHLHE40!0.57!6.36!BHLHE40;;chr10:8100691..8100732,+!p5@GATA3!0.57!2.70!GATA3;;chr12:54393880..54393962,+!p1@HOXC9!0.57!2.70!HOXC9;;chr21:38071430..38071456,+!p1@SIM2!0.57!2.70!SIM2;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!0.57!2.70!SEBOX;;chr5:142780189..142780223,-!p6@NR3C1!0.57!2.70!NR3C1;;chr9:14314131..14314147,-!p2@NFIB!0.56!18.11!NFIB;;chr19:38146320..38146401,-!p1@ZFP30!0.56!17.53!ZFP30;;chr16:3493446..3493510,-!p1@ZNF597!0.56!14.25!ZNF597;;chr3:12329358..12329393,+!p3@PPARG!0.56!7.51!PPARG;;chr11:8102749..8102769,+!p2@TUB!0.56!5.78!TUB;;chr19:37464063..37464127,+!p2@ZNF568!0.56!3.66!ZNF568;;chr22:22863052..22863133,-!p1@ZNF280B!0.55!7.90!ZNF280B;;chr2:200323414..200323455,-!p1@SATB2!0.55!6.36!SATB2;;chr3:129158854..129158883,-!p3@MBD4!0.54!15.22!MBD4;;chr1:33004996..33005017,+!p3@ZBTB8A!0.54!3.66!ZBTB8A;;chr19:22398533..22398542,-!p@chr19:22398533..22398542,-!0.54!2.50!ZNF676;;chr12:54380036..54380091,+!p4@HOXC10!0.54!2.50!HOXC10;;chr12:54447637..54447659,+!p4@HOXC4!0.54!2.50!HOXC4;;chr5:2751785..2751808,-!p2@IRX2!0.54!2.50!IRX2;;chr2:238600789..238600925,+!p1@LRRFIP1!0.53!61.45!LRRFIP1;;chr12:124873357..124873401,-!p1@NCOR2!0.53!35.63!NCOR2;;chr4:1873011..1873063,+!p2@WHSC1!0.52!9.63!WHSC1;;chr19:53496806..53496848,-!p2@ZNF702P!0.52!3.85!ZNF702P;;chr16:54320158..54320200,-!p5@IRX3!0.52!3.66!IRX3;;chr9:110251836..110251887,-!p4@KLF4!0.52!3.27!KLF4;;chr5:134369879..134369898,-!p2@PITX1!0.52!2.31!PITX1;;chr7:35293665..35293680,-!p2@TBX20!0.52!2.31!TBX20;;chr19:56879625..56879636,+!p5@ZNF542!0.52!2.31!ZNF542;;chr11:65668011..65668020,-!p3@FOSL1!0.52!2.31!FOSL1;;chr12:54447219..54447237,+!p6@HOXC4!0.52!2.31!HOXC4;;chr17:26697304..26697335,-!p1@SEBOX,p1@VTN!0.52!2.31!SEBOX;;chr1:26496382..26496457,+!p1@ZNF593!0.51!176.63!ZNF593;;chr5:72744594..72744609,-!p1@FOXD1!0.51!12.91!FOXD1;;chr14:61116183..61116208,-!p1@SIX1!0.51!10.59!SIX1;;chr19:44331493..44331552,+!p1@ZNF283!0.51!10.02!ZNF283;;chr8:106330696..106330719,+!p2@ZFPM2!0.51!3.08!ZFPM2;;chrX:128657457..128657475,-!p1@SMARCA1!0.50!32.94!SMARCA1;;chr15:67357924..67357952,+!p2@SMAD3!0.50!18.68!SMAD3;;chr2:46524897..46524911,+!p2@EPAS1!0.50!7.51!EPAS1;;chr5:150284532..150284549,-!p1@ZNF300!0.50!5.39!ZNF300;;chr17:46688334..46688385,-!p1@HOXB7!0.50!3.47!HOXB7;;chr6:44233252..44233296,-!p1@NFKBIE!0.49!27.16!NFKBIE;;chr1:935467..935484,-!p1@HES4!0.49!11.75!HES4;;chr19:12203100..12203132,+!p1@ZNF788!0.49!5.01!ZNF788;;chr5:174151553..174151610,+!p1@MSX2!0.49!4.05!MSX2;;chr8:28243785..28243799,-!p6@ZNF395!0.49!2.70!ZNF395;;chr6:10412477..10412490,-!p10@TFAP2A!0.49!2.12!TFAP2A;;chr6:10415263..10415274,-!p8@TFAP2A!0.49!2.12!TFAP2A;;chr19:48773337..48773339,+!p2@ZNF114!0.49!2.12!ZNF114;;chr10:64134045..64134083,+!p3@ZNF365!0.49!2.12!ZNF365;;chr3:12329339..12329356,+!p5@PPARG!0.49!2.12!PPARG;;chr4:174451370..174451387,-!p1@HAND2!0.49!2.12!HAND2;;chr8:37553292..37553317,+!p1@ZNF703!0.48!64.53!ZNF703;;chr19:53935221..53935258,+!p1@ZNF761!0.48!27.54!ZNF761;;chr7:149470641..149470694,-!p1@ZNF467!0.48!11.94!ZNF467;;chr3:44771092..44771160,+!p1@ZNF501!0.48!10.59!ZNF501;;chr3:5021191..5021202,+!p3@BHLHE40!0.48!6.74!BHLHE40;;chr5:178157700..178157734,-!p3@ZNF354A!0.48!5.01!ZNF354A;;chr6:27356527..27356557,+!p2@ZNF391!0.48!3.08!ZNF391;;chr4:4291861..4291913,-!p1@LYAR!0.47!61.45!LYAR;;chr7:139762641..139762768,-!p1@PARP12!0.47!36.60!PARP12;;chr7:137686824..137686865,-!p2@CREB3L2!0.47!33.52!CREB3L2;;chr5:56247935..56247959,-!p1@MIER3!0.47!13.87!MIE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| ||
Line 38: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aACC-MESO-1.CNhs11263.10493-107B7.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aACC-MESO-1.CNhs11263.10493-107B7.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aACC-MESO-1.CNhs11263.10493-107B7.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aACC-MESO-1.CNhs11263.10493-107B7.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aACC-MESO-1.CNhs11263.10493-107B7.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10493-107B7 | |id=FF:10493-107B7 | ||
|is_a=EFO:0002091;;FF:0000210;;FF:0102219;;FF:0102424 | |is_a=EFO:0002091;;FF:0000210;;FF:0102219;;FF:0102424 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs11263 | |||
|library_id_phase_based=2:CNhs11263 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10493 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10493 | |||
|name=mesothelioma cell line:ACC-MESO-1 | |name=mesothelioma cell line:ACC-MESO-1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 46: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11263,LSID758,release008,COMPLETED | |profile_hcage=CNhs11263,LSID758,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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Line 63: | Line 78: | ||
|rna_weight_ug=50.6495 | |rna_weight_ug=50.6495 | ||
|sample_age=61 | |sample_age=61 | ||
|sample_category=cell lines | |||
|sample_cell_catalog=RCB2292 | |sample_cell_catalog=RCB2292 | ||
|sample_cell_line=ACC-MESO-1 | |sample_cell_line=ACC-MESO-1 | ||
Line 84: | Line 100: | ||
|top_motifs=FOXQ1:1.28511443378;PITX1..3:1.26387129252;SP1:1.23733658422;HMGA1,2:1.17834270083;ADNP_IRX_SIX_ZHX:1.11638871109;PDX1:1.07533721399;CDX1,2,4:0.981074772004;HIF1A:0.918469427304;ZNF148:0.884125432389;XCPE1{core}:0.869905682944;ELK1,4_GABP{A,B1}:0.860203653807;EN1,2:0.803534820594;bHLH_family:0.772152479283;IRF7:0.717869182648;EVI1:0.629142985514;AHR_ARNT_ARNT2:0.619355259339;STAT5{A,B}:0.613435003593;IRF1,2:0.587011107453;LHX3,4:0.573404595698;ZNF384:0.536108415396;CRX:0.527920942253;TEAD1:0.525022680293;ONECUT1,2:0.516000183397;RXR{A,B,G}:0.506925493474;T:0.499179035627;XBP1:0.497281929918;TBX4,5:0.467953200043;FOXM1:0.450423290094;FOXP1:0.435107139974;MYOD1:0.412814317675;NRF1:0.386179708554;HOX{A4,D4}:0.36840809849;ZNF143:0.363398593607;PAX6:0.360438889907;STAT1,3:0.357013834792;BACH2:0.334057605502;NFE2L2:0.326077897021;VSX1,2:0.323087322135;NR3C1:0.32205605681;PAX4:0.315669952941;FOXA2:0.306336987567;NKX2-2,8:0.305463280026;ZIC1..3:0.301504951515;MYB:0.2912563905;TFDP1:0.246488473414;ATF4:0.239823041319;TFAP2B:0.239597595336;NFE2:0.230731996583;TEF:0.224935840569;TLX1..3_NFIC{dimer}:0.223084613928;PRRX1,2:0.205423241312;HOX{A5,B5}:0.199251404727;FOS_FOS{B,L1}_JUN{B,D}:0.178704615611;NKX3-2:0.173066577895;POU3F1..4:0.167421243868;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.166631399493;AIRE:0.164515602804;CEBPA,B_DDIT3:0.147478410878;STAT2,4,6:0.142178448758;NKX6-1,2:0.138360971847;NFKB1_REL_RELA:0.12941883888;NFY{A,B,C}:0.123518179883;EP300:0.117795014711;ZBTB16:0.115703643583;HBP1_HMGB_SSRP1_UBTF:0.11174361572;ZFP161:0.0987983323848;HSF1,2:0.097165641357;RBPJ:0.0953472034564;PAX2:0.0690200233185;RFX1:0.0669854253385;LMO2:0.0645403000875;JUN:0.0429059764744;TP53:0.0388589428724;MTE{core}:0.0361716571659;HIC1:0.031923566207;FOSL2:0.027103984201;RXRA_VDR{dimer}:0.00722252463838;TOPORS:0.0047661320313;FOXD3:-0.000917554849787;ESRRA:-0.00528841129809;GTF2A1,2:-0.00845506565488;HLF:-0.0192942976047;GFI1B:-0.0195457206177;MAZ:-0.0266227026994;POU6F1:-0.036080297948;E2F1..5:-0.0452880191908;EGR1..3:-0.0468681504756;NANOG:-0.048359185095;ARID5B:-0.0518887665464;POU1F1:-0.0623278819789;IKZF1:-0.0630207181986;HNF1A:-0.0662326185081;NFATC1..3:-0.0668733804351;NR5A1,2:-0.0672936849773;HOXA9_MEIS1:-0.0726254483461;GTF2I:-0.0752286654615;GLI1..3:-0.0856911328803;HES1:-0.0864077894033;CREB1:-0.0922043482949;SNAI1..3:-0.102258772864;ZEB1:-0.119887125732;NR6A1:-0.127758780093;PPARG:-0.135132512245;FOXP3:-0.141739507638;OCT4_SOX2{dimer}:-0.16095609703;CUX2:-0.163037374765;FOX{F1,F2,J1}:-0.168960191453;PAX8:-0.176104093184;NKX3-1:-0.177657494228;TFCP2:-0.178288264315;SOX17:-0.179059760891;ZBTB6:-0.183698610693;GATA6:-0.189797395175;ATF5_CREB3:-0.194970102435;RORA:-0.195116656565;GFI1:-0.203920290937;TAL1_TCF{3,4,12}:-0.20521521414;ZNF238:-0.212689003047;NKX2-3_NKX2-5:-0.21452832337;MEF2{A,B,C,D}:-0.214848220055;PAX3,7:-0.242211656122;SRF:-0.246807336994;FOX{I1,J2}:-0.246820879048;POU5F1:-0.254997931647;HOX{A6,A7,B6,B7}:-0.282176435658;UFEwm:-0.294231188627;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.327639992946;PATZ1:-0.333777961852;RREB1:-0.348988293944;TFAP2{A,C}:-0.354322393211;DBP:-0.355904159768;ATF6:-0.356510942171;HNF4A_NR2F1,2:-0.357763478856;FOXL1:-0.378353800004;NFIX:-0.380318235664;LEF1_TCF7_TCF7L1,2:-0.391146382168;ELF1,2,4:-0.396955648947;HAND1,2:-0.420732314464;IKZF2:-0.430686453758;SPIB:-0.430812097126;FOX{D1,D2}:-0.442761750096;POU2F1..3:-0.443595810767;CDC5L:-0.447783416028;MYBL2:-0.46071349802;DMAP1_NCOR{1,2}_SMARC:-0.470733090509;FOXN1:-0.471213706155;ALX1:-0.481750564151;REST:-0.491960143896;RFX2..5_RFXANK_RFXAP:-0.495765931869;PAX1,9:-0.52415434186;RUNX1..3:-0.526080501894;MAFB:-0.535383785808;SOX2:-0.537070648786;ETS1,2:-0.547526039966;PBX1:-0.551082817164;GCM1,2:-0.552618859088;PAX5:-0.564958141969;ZNF423:-0.576929153609;BREu{core}:-0.578544732787;MZF1:-0.599143390659;EBF1:-0.626109179926;NFE2L1:-0.631396154363;MTF1:-0.665108475682;SOX5:-0.672400091955;NR1H4:-0.67357798375;SPI1:-0.68176309145;SOX{8,9,10}:-0.707326717437;SMAD1..7,9:-0.710452631596;AR:-0.72357640339;KLF4:-0.745321447223;SREBF1,2:-0.771114341277;ALX4:-0.799957434933;NFIL3:-0.803412044559;PRDM1:-0.824478642929;TBP:-0.832382778956;TFAP4:-0.868429578363;NKX2-1,4:-0.881691134765;TLX2:-0.88938102582;GZF1:-0.946557630775;GATA4:-0.967126022539;NHLH1,2:-0.978613257159;ATF2:-0.996759613503;MED-1{core}:-1.06921078758;HMX1:-1.08394677839;MYFfamily:-1.08808056142;BPTF:-1.11993372314;FOXO1,3,4:-1.19049796932;TGIF1:-1.23059246305;ESR1:-1.24506691522;YY1:-1.30404013092;NANOG{mouse}:-1.68845706401;SPZ1:-1.760428143 | |top_motifs=FOXQ1:1.28511443378;PITX1..3:1.26387129252;SP1:1.23733658422;HMGA1,2:1.17834270083;ADNP_IRX_SIX_ZHX:1.11638871109;PDX1:1.07533721399;CDX1,2,4:0.981074772004;HIF1A:0.918469427304;ZNF148:0.884125432389;XCPE1{core}:0.869905682944;ELK1,4_GABP{A,B1}:0.860203653807;EN1,2:0.803534820594;bHLH_family:0.772152479283;IRF7:0.717869182648;EVI1:0.629142985514;AHR_ARNT_ARNT2:0.619355259339;STAT5{A,B}:0.613435003593;IRF1,2:0.587011107453;LHX3,4:0.573404595698;ZNF384:0.536108415396;CRX:0.527920942253;TEAD1:0.525022680293;ONECUT1,2:0.516000183397;RXR{A,B,G}:0.506925493474;T:0.499179035627;XBP1:0.497281929918;TBX4,5:0.467953200043;FOXM1:0.450423290094;FOXP1:0.435107139974;MYOD1:0.412814317675;NRF1:0.386179708554;HOX{A4,D4}:0.36840809849;ZNF143:0.363398593607;PAX6:0.360438889907;STAT1,3:0.357013834792;BACH2:0.334057605502;NFE2L2:0.326077897021;VSX1,2:0.323087322135;NR3C1:0.32205605681;PAX4:0.315669952941;FOXA2:0.306336987567;NKX2-2,8:0.305463280026;ZIC1..3:0.301504951515;MYB:0.2912563905;TFDP1:0.246488473414;ATF4:0.239823041319;TFAP2B:0.239597595336;NFE2:0.230731996583;TEF:0.224935840569;TLX1..3_NFIC{dimer}:0.223084613928;PRRX1,2:0.205423241312;HOX{A5,B5}:0.199251404727;FOS_FOS{B,L1}_JUN{B,D}:0.178704615611;NKX3-2:0.173066577895;POU3F1..4:0.167421243868;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.166631399493;AIRE:0.164515602804;CEBPA,B_DDIT3:0.147478410878;STAT2,4,6:0.142178448758;NKX6-1,2:0.138360971847;NFKB1_REL_RELA:0.12941883888;NFY{A,B,C}:0.123518179883;EP300:0.117795014711;ZBTB16:0.115703643583;HBP1_HMGB_SSRP1_UBTF:0.11174361572;ZFP161:0.0987983323848;HSF1,2:0.097165641357;RBPJ:0.0953472034564;PAX2:0.0690200233185;RFX1:0.0669854253385;LMO2:0.0645403000875;JUN:0.0429059764744;TP53:0.0388589428724;MTE{core}:0.0361716571659;HIC1:0.031923566207;FOSL2:0.027103984201;RXRA_VDR{dimer}:0.00722252463838;TOPORS:0.0047661320313;FOXD3:-0.000917554849787;ESRRA:-0.00528841129809;GTF2A1,2:-0.00845506565488;HLF:-0.0192942976047;GFI1B:-0.0195457206177;MAZ:-0.0266227026994;POU6F1:-0.036080297948;E2F1..5:-0.0452880191908;EGR1..3:-0.0468681504756;NANOG:-0.048359185095;ARID5B:-0.0518887665464;POU1F1:-0.0623278819789;IKZF1:-0.0630207181986;HNF1A:-0.0662326185081;NFATC1..3:-0.0668733804351;NR5A1,2:-0.0672936849773;HOXA9_MEIS1:-0.0726254483461;GTF2I:-0.0752286654615;GLI1..3:-0.0856911328803;HES1:-0.0864077894033;CREB1:-0.0922043482949;SNAI1..3:-0.102258772864;ZEB1:-0.119887125732;NR6A1:-0.127758780093;PPARG:-0.135132512245;FOXP3:-0.141739507638;OCT4_SOX2{dimer}:-0.16095609703;CUX2:-0.163037374765;FOX{F1,F2,J1}:-0.168960191453;PAX8:-0.176104093184;NKX3-1:-0.177657494228;TFCP2:-0.178288264315;SOX17:-0.179059760891;ZBTB6:-0.183698610693;GATA6:-0.189797395175;ATF5_CREB3:-0.194970102435;RORA:-0.195116656565;GFI1:-0.203920290937;TAL1_TCF{3,4,12}:-0.20521521414;ZNF238:-0.212689003047;NKX2-3_NKX2-5:-0.21452832337;MEF2{A,B,C,D}:-0.214848220055;PAX3,7:-0.242211656122;SRF:-0.246807336994;FOX{I1,J2}:-0.246820879048;POU5F1:-0.254997931647;HOX{A6,A7,B6,B7}:-0.282176435658;UFEwm:-0.294231188627;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.327639992946;PATZ1:-0.333777961852;RREB1:-0.348988293944;TFAP2{A,C}:-0.354322393211;DBP:-0.355904159768;ATF6:-0.356510942171;HNF4A_NR2F1,2:-0.357763478856;FOXL1:-0.378353800004;NFIX:-0.380318235664;LEF1_TCF7_TCF7L1,2:-0.391146382168;ELF1,2,4:-0.396955648947;HAND1,2:-0.420732314464;IKZF2:-0.430686453758;SPIB:-0.430812097126;FOX{D1,D2}:-0.442761750096;POU2F1..3:-0.443595810767;CDC5L:-0.447783416028;MYBL2:-0.46071349802;DMAP1_NCOR{1,2}_SMARC:-0.470733090509;FOXN1:-0.471213706155;ALX1:-0.481750564151;REST:-0.491960143896;RFX2..5_RFXANK_RFXAP:-0.495765931869;PAX1,9:-0.52415434186;RUNX1..3:-0.526080501894;MAFB:-0.535383785808;SOX2:-0.537070648786;ETS1,2:-0.547526039966;PBX1:-0.551082817164;GCM1,2:-0.552618859088;PAX5:-0.564958141969;ZNF423:-0.576929153609;BREu{core}:-0.578544732787;MZF1:-0.599143390659;EBF1:-0.626109179926;NFE2L1:-0.631396154363;MTF1:-0.665108475682;SOX5:-0.672400091955;NR1H4:-0.67357798375;SPI1:-0.68176309145;SOX{8,9,10}:-0.707326717437;SMAD1..7,9:-0.710452631596;AR:-0.72357640339;KLF4:-0.745321447223;SREBF1,2:-0.771114341277;ALX4:-0.799957434933;NFIL3:-0.803412044559;PRDM1:-0.824478642929;TBP:-0.832382778956;TFAP4:-0.868429578363;NKX2-1,4:-0.881691134765;TLX2:-0.88938102582;GZF1:-0.946557630775;GATA4:-0.967126022539;NHLH1,2:-0.978613257159;ATF2:-0.996759613503;MED-1{core}:-1.06921078758;HMX1:-1.08394677839;MYFfamily:-1.08808056142;BPTF:-1.11993372314;FOXO1,3,4:-1.19049796932;TGIF1:-1.23059246305;ESR1:-1.24506691522;YY1:-1.30404013092;NANOG{mouse}:-1.68845706401;SPZ1:-1.760428143 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10493-107B7;search_select_hide=table117:FF:10493-107B7 | |||
}} | }} |
Latest revision as of 14:27, 3 June 2020
Name: | mesothelioma cell line:ACC-MESO-1 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs11263 |
Sample type: | cell lines |
Genomic View: | UCSC |
RefEX: | Specific genes |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11263
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11263
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.741 |
10 | 10 | 0.319 |
100 | 100 | 0.178 |
101 | 101 | 0.0558 |
102 | 102 | 0.592 |
103 | 103 | 0.327 |
104 | 104 | 0.79 |
105 | 105 | 0.886 |
106 | 106 | 0.00231 |
107 | 107 | 0.153 |
108 | 108 | 0.269 |
109 | 109 | 0.178 |
11 | 11 | 0.217 |
110 | 110 | 0.928 |
111 | 111 | 0.156 |
112 | 112 | 0.00776 |
113 | 113 | 0.186 |
114 | 114 | 0.957 |
115 | 115 | 0.561 |
116 | 116 | 0.2 |
117 | 117 | 0.544 |
118 | 118 | 0.0562 |
119 | 119 | 0.602 |
12 | 12 | 0.584 |
120 | 120 | 0.655 |
121 | 121 | 0.516 |
122 | 122 | 0.177 |
123 | 123 | 0.785 |
124 | 124 | 0.544 |
125 | 125 | 0.167 |
126 | 126 | 0.545 |
127 | 127 | 0.33 |
128 | 128 | 0.0289 |
129 | 129 | 0.94 |
13 | 13 | 0.212 |
130 | 130 | 0.579 |
131 | 131 | 0.392 |
132 | 132 | 0.658 |
133 | 133 | 0.0987 |
134 | 134 | 0.183 |
135 | 135 | 0.137 |
136 | 136 | 0.0292 |
137 | 137 | 0.236 |
138 | 138 | 0.306 |
139 | 139 | 0.458 |
14 | 14 | 0.239 |
140 | 140 | 0.0559 |
141 | 141 | 0.722 |
142 | 142 | 0.078 |
143 | 143 | 0.658 |
144 | 144 | 0.852 |
145 | 145 | 0.00483 |
146 | 146 | 0.934 |
147 | 147 | 0.664 |
148 | 148 | 0.646 |
149 | 149 | 0.16 |
15 | 15 | 0.227 |
150 | 150 | 0.334 |
151 | 151 | 0.356 |
152 | 152 | 0.352 |
153 | 153 | 0.463 |
154 | 154 | 0.235 |
155 | 155 | 0.214 |
156 | 156 | 0.337 |
157 | 157 | 0.589 |
158 | 158 | 0.784 |
159 | 159 | 0.194 |
16 | 16 | 0.213 |
160 | 160 | 0.174 |
161 | 161 | 0.967 |
162 | 162 | 0.624 |
163 | 163 | 0.919 |
164 | 164 | 0.32 |
165 | 165 | 0.517 |
166 | 166 | 0.662 |
167 | 167 | 0.656 |
168 | 168 | 0.254 |
169 | 169 | 0.888 |
17 | 17 | 0.461 |
18 | 18 | 0.727 |
19 | 19 | 0.177 |
2 | 2 | 0.307 |
20 | 20 | 0.0251 |
21 | 21 | 0.752 |
22 | 22 | 0.652 |
23 | 23 | 0.22 |
24 | 24 | 0.829 |
25 | 25 | 0.217 |
26 | 26 | 0.353 |
27 | 27 | 0.254 |
28 | 28 | 0.202 |
29 | 29 | 0.391 |
3 | 3 | 0.285 |
30 | 30 | 0.982 |
31 | 31 | 0.314 |
32 | 32 | 0.00281 |
33 | 33 | 0.85 |
34 | 34 | 0.361 |
35 | 35 | 0.00132 |
36 | 36 | 0.118 |
37 | 37 | 0.842 |
38 | 38 | 0.33 |
39 | 39 | 0.977 |
4 | 4 | 0.565 |
40 | 40 | 0.0562 |
41 | 41 | 0.149 |
42 | 42 | 0.0504 |
43 | 43 | 0.85 |
44 | 44 | 0.108 |
45 | 45 | 0.56 |
46 | 46 | 0.0698 |
47 | 47 | 0.982 |
48 | 48 | 0.896 |
49 | 49 | 0.445 |
5 | 5 | 0.373 |
50 | 50 | 0.245 |
51 | 51 | 0.237 |
52 | 52 | 0.897 |
53 | 53 | 0.447 |
54 | 54 | 0.251 |
55 | 55 | 0.944 |
56 | 56 | 0.42 |
57 | 57 | 0.656 |
58 | 58 | 0.283 |
59 | 59 | 0.0327 |
6 | 6 | 0.354 |
60 | 60 | 0.0839 |
61 | 61 | 0.00286 |
62 | 62 | 0.0767 |
63 | 63 | 0.629 |
64 | 64 | 0.68 |
65 | 65 | 0.685 |
66 | 66 | 4.49061e-7 |
67 | 67 | 0.738 |
68 | 68 | 0.0729 |
69 | 69 | 0.36 |
7 | 7 | 0.559 |
70 | 70 | 0.816 |
71 | 71 | 0.464 |
72 | 72 | 0.696 |
73 | 73 | 0.227 |
74 | 74 | 0.765 |
75 | 75 | 0.266 |
76 | 76 | 0.245 |
77 | 77 | 0.23 |
78 | 78 | 0.726 |
79 | 79 | 0.13 |
8 | 8 | 0.396 |
80 | 80 | 0.278 |
81 | 81 | 0.331 |
82 | 82 | 0.378 |
83 | 83 | 0.241 |
84 | 84 | 0.431 |
85 | 85 | 0.34 |
86 | 86 | 0.155 |
87 | 87 | 0.15 |
88 | 88 | 0.71 |
89 | 89 | 0.25 |
9 | 9 | 0.089 |
90 | 90 | 0.698 |
91 | 91 | 0.113 |
92 | 92 | 0.945 |
93 | 93 | 0.589 |
94 | 94 | 0.975 |
95 | 95 | 0.338 |
96 | 96 | 0.997 |
97 | 97 | 0.137 |
98 | 98 | 0.0908 |
99 | 99 | 0.6 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11263
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0102219 adrenocortical carcinoma cell
FF:0102424 mesothelioma cell line sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000151 (secretory cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000076 (squamous epithelial cell)
0000213 (lining cell)
0002078 (meso-epithelial cell)
0000150 (glandular epithelial cell)
0000163 (endocrine cell)
0000215 (barrier cell)
0000174 (steroid hormone secreting cell)
0000255 (eukaryotic cell)
0000077 (mesothelial cell)
0002097 (cortical cell of adrenal gland)
DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
305 (carcinoma)
170 (endocrine gland cancer)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002369 (adrenal gland)
0002100 (trunk)
0001851 (cortex)
0001235 (adrenal cortex)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0000062 (organ)
0000475 (organism subdivision)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009569 (subdivision of trunk)
0002368 (endocrine gland)
0005177 (trunk region element)
0005172 (abdomen element)
0002530 (gland)
0006858 (adrenal/interrenal gland)
0010317 (germ layer / neural crest derived structure)
0005173 (abdominal segment element)
0002417 (abdominal segment of trunk)
0000949 (endocrine system)
0000916 (abdomen)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0102219 (adrenocortical carcinoma cell)
0102424 (mesothelioma cell line sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000222 (mesodermal cell)