FFCP PHASE1:Hg19::chr13:24844942..24844963,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=221178 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=23222 | |||
|TSSclassifier=strong | |||
|UniProt=Q5VX67 | |||
|association_with_transcript=-15bp_to_ENST00000454083_5end | |||
|cluster_id=chr13:24844942..24844963,+ | |||
|coexpression_cluster_id=C26 | |||
|description=CAGE_peak_5_at_SPATA13_5end | |||
|id=chr13:24844942..24844963,+ | |||
|ontology_enrichment_celltype=CL:0000738!3.86e-41!140;CL:0002057!2.19e-36!42;CL:0000766!5.18e-36!76;CL:0000037!1.12e-35!172;CL:0000566!1.12e-35!172;CL:0000988!9.56e-34!182;CL:0002032!7.65e-33!165;CL:0000837!7.65e-33!165;CL:0000860!1.75e-32!45;CL:0000557!3.98e-31!71;CL:0002031!4.59e-30!124;CL:0000763!8.30e-30!112;CL:0000049!8.30e-30!112;CL:0000839!1.47e-28!70;CL:0002087!4.99e-28!119;CL:0002009!7.07e-27!65;CL:0002194!1.56e-25!63;CL:0000576!1.56e-25!63;CL:0000040!1.56e-25!63;CL:0000559!1.56e-25!63;CL:0002393!1.19e-08!9;CL:0002397!1.19e-08!9;CL:0000094!1.35e-08!8 | |||
|ontology_enrichment_celltype_v019=CL:0000860;2.47e-49;33!CL:0002057;2.47e-49;33!CL:0000473;5.50e-43;39!CL:0000234;5.50e-43;39!CL:0000576;8.36e-36;48!CL:0000766;1.13e-34;69!CL:0000094;4.84e-15;8!CL:0000763;8.78e-15;100!CL:0000738;7.51e-12;136!CL:0002087;1.36e-11;104!CL:0002393;7.45e-11;6!CL:0002397;7.45e-11;6!CL:0000081;2.19e-10;11!CL:0000097;1.18e-08;5!CL:0000988;5.53e-07;177!CL:0000775;5.75e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,4.41e-73,72;CL:0000473,2.19e-69,48;CL:0000234,2.19e-69,48;CL:0000860,1.80e-68,42;CL:0002057,1.80e-68,42;CL:0000557,2.46e-63,67;CL:0000839,3.51e-57,66;CL:0000738,1.12e-55,136;CL:0002009,6.46e-55,61;CL:0000763,1.70e-52,108;CL:0000049,1.70e-52,108;CL:0002194,3.00e-52,59;CL:0000576,3.00e-52,59;CL:0000040,3.00e-52,59;CL:0000559,3.00e-52,59;CL:0000037,3.85e-43,168;CL:0000988,5.63e-41,177;CL:0002032,2.43e-40,161;CL:0000837,2.43e-40,161;CL:0002031,1.44e-39,120;CL:0002087,1.44e-35,115;CL:0002393,4.07e-15,9;CL:0002397,4.07e-15,9;CL:0000094,5.20e-15,8;CL:0000081,2.30e-10,11;CL:0000134,4.58e-09,354;CL:0000097,1.09e-08,5;CL:0002028,1.09e-08,5;CL:0002320,1.60e-08,361;CL:0000219,4.88e-07,386;CL:0000775,5.72e-07,3 | |||
|ontology_enrichment_development_v019=CL:0002057;6.39e-49;42!CL:0000049;3.25e-14;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!2.48e-39!102;UBERON:0003061!2.48e-39!102;UBERON:0002193!9.10e-35!112;UBERON:0002371!5.09e-27!80;UBERON:0001474!3.36e-24!86;UBERON:0007023!1.93e-21!115;UBERON:0002405!2.18e-19!115;UBERON:0004765!1.87e-17!101;UBERON:0001434!1.87e-17!101;UBERON:0003081!1.09e-11!216;UBERON:0001049!1.51e-11!57;UBERON:0005068!1.51e-11!57;UBERON:0006241!1.51e-11!57;UBERON:0007135!1.51e-11!57;UBERON:0000178!1.50e-10!15;UBERON:0000179!1.50e-10!15;UBERON:0000463!1.50e-10!15;UBERON:0002780!3.18e-09!41;UBERON:0001890!3.18e-09!41;UBERON:0006240!3.18e-09!41;UBERON:0002616!5.03e-09!59;UBERON:0003080!9.00e-09!42;UBERON:0002204!3.03e-08!167;UBERON:0002346!6.35e-08!90;UBERON:0002020!1.22e-07!34;UBERON:0003528!1.22e-07!34;UBERON:0001893!2.57e-07!34;UBERON:0003075!2.96e-07!86;UBERON:0007284!2.96e-07!86;UBERON:0000955!4.22e-07!69;UBERON:0006238!4.22e-07!69;UBERON:0002791!4.63e-07!33;UBERON:0002308!8.27e-07!9;UBERON:0000125!8.27e-07!9;UBERON:0002420!9.27e-07!9;UBERON:0007245!9.27e-07!9;UBERON:0010009!9.27e-07!9;UBERON:0010011!9.27e-07!9;UBERON:0000454!9.27e-07!9 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;7.22e-13;15!UBERON:0000179;7.22e-13;15!UBERON:0000463;7.22e-13;15!UBERON:0002390;2.01e-09;32!UBERON:0002298;2.15e-08;6!UBERON:0002420;1.21e-07;9!UBERON:0000125;1.21e-07;9!UBERON:0007245;1.21e-07;9!UBERON:0002308;1.21e-07;9!UBERON:0010009;1.21e-07;9!UBERON:0010011;1.21e-07;9!UBERON:0000454;1.21e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,3.22e-71,98;UBERON:0003061,3.22e-71,98;UBERON:0002193,2.17e-64,108;UBERON:0002371,7.61e-56,76;UBERON:0002405,1.67e-51,93;UBERON:0001474,1.84e-50,82;UBERON:0004765,2.09e-44,90;UBERON:0001434,3.31e-38,100;UBERON:0003081,6.29e-27,203;UBERON:0002204,9.54e-18,167;UBERON:0000178,6.02e-13,15;UBERON:0000179,6.02e-13,15;UBERON:0000463,6.02e-13,15;UBERON:0000926,1.29e-10,315;UBERON:0004120,1.29e-10,315;UBERON:0006603,1.29e-10,315;UBERON:0002298,1.48e-08,6;UBERON:0001049,1.89e-08,56;UBERON:0005068,1.89e-08,56;UBERON:0006241,1.89e-08,56;UBERON:0007135,1.89e-08,56;UBERON:0002384,8.56e-08,371;UBERON:0000125,1.02e-07,9;UBERON:0002308,1.02e-07,9;UBERON:0002420,1.21e-07,9;UBERON:0007245,1.21e-07,9;UBERON:0010009,1.21e-07,9;UBERON:0010011,1.21e-07,9;UBERON:0000454,1.21e-07,9;UBERON:0000073,1.96e-07,53;UBERON:0002616,1.96e-07,53;UBERON:0007023,3.36e-07,114 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.672325146451775,0,0,0,0.123121058076788,0.204000691244253,0,0,0.136874425072884,0,0.534893840235659,0.821005894499457,0.550975469195755,4.32700704533794,11.1310525448192,8.20525453575203,0,0,0,0,0.142169232487422,0.880801318004542,11.0799081706375,9.42558903109666,7.59538047505481,0,0.32389366601898,0,6.54292074508041,7.55751887377619,10.6736986922639,10.9241647345672,7.81218987241469,15.7950249156503,8.91846416198666,9.99026755463492,5.91205574721463,15.1688099524112,14.846147722428,20.3139729891513,7.71793592124679,6.82265375144614,8.53949240891322,16.5285301880287,15.7255223267286,19.8194508997703,6.26717470354761,11.369428484433,5.96714650745772,10.1573233520004,4.53908179752912,5.60540024096017,12.0599359323237,13.037072960505,14.1172749058326,4.84319602106695,6.2607198117886,6.32924774881769,6.33765858935825,6.16552469898626,6.70907665626803,11.569849008089,6.45760639218477,7.23265140136861,9.12040779971995,3.18266683518544,5.66258876670365,0,0.546138611262131,0,0,0,1.14950487990897,0,0,1.1384259382189,0,0,3.96513985737078,12.3311883855938,0.526768169550154,0.983548850569165,1.57204305099666,0.616804496998528,0.501559486172034,1.30368906653436,1.4203434172042,1.94826728407911,0.779873198196215,0.883817722424512,0.221533894583621,0,0.896639238079726,0.650296737799391,0.328875809207352,0.829050053357545,0.289803085735052,0.741432815810302,1.60524496853828,0,0.226618685395132,1.53288197440768,1.03088233644789,0.759059076058509,0,0,2.85135613334512,0.903450714466637,0.383959833463255,1.24930726552346,0.473554504088034,0,0.403213486449465,0.534880391567015,0.579297615531196,0,0.670700859703636,0.12786256184353,0,0,0.144846518960824,0.795285947051099,0.486634870302636,0,0,0.087834785693126,0.523916301990851,0,0,0,0.174129737299267,0.531831842075461,0.715471872916026,1.14398982156026,0,0,0,0,0,0,0,0.208994966536811,0,0,0,0,0,0,0,0,0.0892997282840798,0,0.112611480483322,0,0,0,25.038279312852,27.1446184903828,0,0,0,0,0.286836620748814,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117434498643765,0,0,0.204154171254893,0,0,0,0.247266929278557,0,0,0,0,0,0,0,0,0,0,0,0.211931901159562,0,0,0,0.18611685633159,0.337552664482532,0.0974370051611986,0.252433774244115,0,0.161646056818812,0,0,0,0,0,0,0,0,0,0.10366105501537,0,0,0,0,0,0.928735856063958,0.721879481669586,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.982827216677626,0,0.441463099414651,0,0,0,0,0,0,0,0,0,0.231860809950154,0,0,0,0,0,0,2.21595305478658,2.57404691653161,1.18904929830983,0,0,0,0,0,0,7.8826118063351,2.46535615237033,4.14656231081544,12.5384359472756,2.5248486685276,0.126995788584338,0,0,0,0,0,0,0.112131084345361,0,0.07333828582095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.2162378064119,0,0,0,0,0,0.144781306667579,0,0.179060963239896,0,1.18218456121156,0.431255149719035,0.641715181398742,0.254094624222463,0,0,0,0,25.4662388142042,32.9077605124427,31.4955790211387,0,0,0,0,0,0.473107245101804,0.117141414992713,0.300946099727719,0,0,0,0.184369168541703,0,0,0,3.72182447021197,4.74571241800957,2.56146138728266,0,0,0,0,0.306923946576125,0,0,0,0,0,0,0,0,0,0.116210378459959,0,0,0,0.114814448164607,0,0,0,0,0,0,0,0,0,0.215915916102139,0,0,0,0,0,0,0.219259876645935,0,0,0.328014645699706,0,0.309123034943167,0,0,0,0,1.6068392984416,0.096670718292122,0,0,0,0.214840489736547,0.145016693914229,0,0,0,0,0,0,0,0,0,0.308033580176089,0,0,0,0.143124886741991,0,0,0,0,0,0,0,0.539617372749944,0,0,0.202182481573316,1.58510321173008,0,0,0,1.05650146756755,0,0,0,0,0,0,0,0,0,0,0,0,0,0.35667105148125,0.354761064070598,0,0,0,0,0,0,0,0.188287601553558,0,0,0,0,4.05958087385735,4.58782324285425,4.5571774973933,0.952927101831156,1.64544909234478,3.8908398671563,3.7802200606668,3.17250070517708,0,0,0,0.371606350251437,0,0,0,0.199579371432817,0.191505370132367,0.211673582723883,0,0.280797178113459,0.228234679033192,0,0,0.169291777801603,0,0,0,1.03051603426729,0,0,0,0,0,0,0,0,0,0,0.879049075631364,0,0,0,0,0.296964680832639,0,1.9882952955326,2.11004124615769,0.111308705022906,0,0,0.398495976502139,0.276283915531148,0,0,1.35393286007176,0,0,0,0,0.197286811273867,2.3948309234694,0,0,0.927680981618513,0,0,0,0,0,0,0,0,0,0,4.42870692906919,0.964771509003264,0,0.774054819518572,0,0.438770794307945,0,0,0.0769502585037971,0,0,0,0,0,0.0915975934018623,0,0,0.156980256395025,0.664846727600626,0,0,0,0,0.158936578980379,0,0,0,0,0,0.0884575645033392,0,0.296521128680622,0.617819694732514,1.25306339406546,1.07841812769083,0,0.702793337176017,0,0,0,0,0,0,1.13735843331278,0.150323419414493,0,0,0,0,0,0,0,0,0,0,0.52418000472609,0,0,0,0,0,0,0.225980740780532,0,0,0.569797163602908,0,0,0.426905989478705,0,0,0,0,0,0,0,0,0.104602846312333,0.101998217636322,0,2.40168115483916,2.46429682005587,1.27746588066972,0,0.262887354279314,0.279282401272254,0.229160424011684,0.717873024576814,0.399358000997982,0,1.33902874465124,0.470284307407084,0,0,0,0,0.0674035438541849,0,0.254019996197353,4.77137813885582,1.0896272488926,0,0,0,4.27450393947851,2.32140586367385,0.485996453264197,0,0.236417121897595,0.157363764404994,0,0,0,0,0,0,0,0,0,0,0.082092520749339,0.170388021785422,0,0.293104467356165,0,2.84422503995411,1.85125642439766,0,0,0.533937062838473,0.471612915298998,0.414239055347196,0.496166021811951,0.197611631897944,0,0,0,0.2506898940227,0.306345576763462,0,0,0,1.34228891392159,1.1267183763585,2.29363678276028,2.10765197920019,1.73869928235874,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.265841714557995,0,0,0,0,0.181848659202559,0,0,0,0.400027764663154,0.343395705182793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276516872303462,0.974301544196942,1.59437808376036,1.79921933681429,0,0,0,0.59996218756479,0,1.37771983728653,0,0,0,0,0,0.215649622793364,1.25812753484717,0,0,2.33832412111851,0.495743057036009,0.558644917973244,0,0.23658523500376,0,0,0,0.449604575675217,0,1.11743701340006,0,0,0.276629009856872,0.161475645631851,0,0,0,0,0,0,0,0.397832444232549,0.376051641746286,0,0,0,0,0,0.337687923091973,0.781078098613847,1.44680757550829,0.253663240775627,0,0,0,0.879356221798103,0,2.67850917939143,0.672567444437648,0.606965604236632,0.455324382702595,0.266107110487916,0.230467975111559,0,1.22345519358297,0.328863867814245,0,0,0.156986185701028,2.19961825882403,0,0,0,0,0.714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111855431797792,0,0,0,0.205325613712494,0,0,0,0,0,0,0,0,0.231522474323834,0,0,0,0,2.1593931382644,1.48523200163543,0,0,5.82700291475092,2.77168918286382,0.799529247399431,0,0,0,0,0,2.15009374727177,0,0.475940431336403,0,0,0,0,0,0,0,0,0,0,0,0,0.606229585745915,0.267964130156178,0,1.75836092965222,0.426467963801962,0,0.904244737704086,1.61394257169231,0,0.190941474834495,0,0,0,1.01028079521881,0.430333232356058,0,0,0,0,0,0,0,0,0,1.20764276154616,0.320568492303233 | |||
|short_description=p5@SPATA13 | |||
}} |
Latest revision as of 21:25, 16 September 2015
Short description: | p5@SPATA13 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_SPATA13_5end |
Coexpression cluster: | C26_Eosinophils_Neutrophils_CD14_CD14CD16_Basophils_Monocytederived_Whole |
Association with transcript: | -15bp_to_ENST00000454083_5end |
EntrezGene: | SPATA13 |
HGNC: | 23222 |
UniProt: | Q5VX67 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 3.22e-71 | 98 |
blood island | 3.22e-71 | 98 |
hemolymphoid system | 2.17e-64 | 108 |
bone marrow | 7.61e-56 | 76 |
immune system | 1.67e-51 | 93 |
bone element | 1.84e-50 | 82 |
skeletal element | 2.09e-44 | 90 |
skeletal system | 3.31e-38 | 100 |
lateral plate mesoderm | 6.29e-27 | 203 |
musculoskeletal system | 9.54e-18 | 167 |
blood | 6.02e-13 | 15 |
haemolymphatic fluid | 6.02e-13 | 15 |
organism substance | 6.02e-13 | 15 |
mesoderm | 1.29e-10 | 315 |
mesoderm-derived structure | 1.29e-10 | 315 |
presumptive mesoderm | 1.29e-10 | 315 |
brainstem | 1.48e-08 | 6 |
neural tube | 1.89e-08 | 56 |
neural rod | 1.89e-08 | 56 |
future spinal cord | 1.89e-08 | 56 |
neural keel | 1.89e-08 | 56 |
connective tissue | 8.56e-08 | 371 |
neural nucleus | 1.02e-07 | 9 |
nucleus of brain | 1.02e-07 | 9 |
basal ganglion | 1.21e-07 | 9 |
nuclear complex of neuraxis | 1.21e-07 | 9 |
aggregate regional part of brain | 1.21e-07 | 9 |
collection of basal ganglia | 1.21e-07 | 9 |
cerebral subcortex | 1.21e-07 | 9 |
regional part of nervous system | 1.96e-07 | 53 |
regional part of brain | 1.96e-07 | 53 |
adult organism | 3.36e-07 | 114 |