FFCP PHASE1:Hg19::chr1:12538594..12538614,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=55187 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=23595 | |||
|TSSclassifier=strong | |||
|UniProt=F5GZY2 | |||
|association_with_transcript=0bp_to_ENST00000543710_5end | |||
|cluster_id=chr1:12538594..12538614,+ | |||
|description=CAGE_peak_5_at_VPS13D_5end | |||
|id=chr1:12538594..12538614,+ | |||
|ontology_enrichment_celltype=CL:0000183!1.67e-14!59;CL:0000187!1.30e-13!54;CL:0000680!2.84e-12!57;CL:0000056!2.84e-12!57;CL:0000355!2.84e-12!57;CL:0000222!1.88e-11!119;CL:0000192!3.61e-11!42;CL:0000514!3.61e-11!42;CL:0000393!4.36e-11!60;CL:0000211!4.36e-11!60;CL:0000359!5.07e-11!32;CL:1000507!2.17e-09!12;CL:1000494!2.17e-09!12;CL:1000449!2.00e-07!16;CL:0000220!7.01e-07!246 | |||
|ontology_enrichment_celltype_v019=CL:1000507;1.07e-14;10!CL:1000494;1.07e-14;10!CL:1000449;2.69e-09;15!CL:0000064;2.33e-08;3!CL:0000067;2.33e-08;3!CL:0005012;2.33e-08;3!CL:0002304;2.33e-08;3!CL:0000239;4.31e-08;3!CL:1000615;4.31e-08;3!CL:0002306;4.31e-08;3!CL:1000497;4.95e-08;17!CL:0002518;4.95e-08;17!CL:0002681;6.92e-07;12!CL:0002584;6.92e-07;12 | |||
|ontology_enrichment_celltype_v019_2=CL:1000507,1.76e-14,10;CL:1000494,1.76e-14,10;CL:1000449,3.68e-09,15;CL:0000064,2.23e-08,3;CL:0000067,2.23e-08,3;CL:0005012,2.23e-08,3;CL:0002304,2.23e-08,3;CL:1000497,6.49e-08,17;CL:0002518,6.49e-08,17;CL:0000239,7.03e-08,3;CL:1000615,7.03e-08,3;CL:0002306,7.03e-08,3;CL:0000066,1.09e-07,253 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003064!7.36e-13!37;UBERON:0005256!2.08e-12!143;UBERON:0007625!2.88e-11!11;UBERON:0000058!7.47e-11!26;UBERON:0001134!1.01e-10!61;UBERON:0002036!1.01e-10!61;UBERON:0003082!1.01e-10!61;UBERON:0002385!1.02e-10!63;UBERON:0001015!1.02e-10!63;UBERON:0000383!1.02e-10!63;UBERON:0001008!7.01e-10!45;UBERON:0002100!1.21e-09!216;UBERON:0000119!1.43e-09!312;UBERON:0009773!2.17e-09!12;UBERON:0001231!2.17e-09!12;UBERON:0004810!2.17e-09!12;UBERON:0000481!2.30e-09!347;UBERON:0001637!3.00e-09!42;UBERON:0003509!3.00e-09!42;UBERON:0004572!3.00e-09!42;UBERON:0006554!3.10e-09!44;UBERON:0003914!3.51e-09!118;UBERON:0000483!4.13e-09!309;UBERON:0000490!5.04e-09!138;UBERON:0000080!1.35e-08!18;UBERON:0002120!1.35e-08!18;UBERON:0004875!1.35e-08!18;UBERON:0005721!1.35e-08!18;UBERON:0005754!1.35e-08!18;UBERON:0007297!1.35e-08!18;UBERON:0003104!1.75e-08!238;UBERON:0009142!1.75e-08!238;UBERON:0005156!2.01e-08!59;UBERON:0000990!2.01e-08!59;UBERON:0000486!4.01e-08!82;UBERON:0000162!4.29e-08!14;UBERON:0001353!4.29e-08!14;UBERON:0000163!4.29e-08!14;UBERON:0006866!4.29e-08!14;UBERON:0000164!4.29e-08!14;UBERON:0000931!4.29e-08!14;UBERON:0006555!4.48e-08!17;UBERON:0005103!4.48e-08!17;UBERON:0000083!4.48e-08!17;UBERON:0009201!4.48e-08!17;UBERON:0004819!4.48e-08!17;UBERON:0006553!4.48e-08!17;UBERON:0003074!4.48e-08!17;UBERON:0003060!4.48e-08!17;UBERON:0004290!5.66e-08!70;UBERON:0004573!1.22e-07!33;UBERON:0004571!1.22e-07!33;UBERON:0004211!2.00e-07!16;UBERON:0001285!2.00e-07!16;UBERON:0007684!2.00e-07!16;UBERON:0003220!2.00e-07!16;UBERON:0004208!2.00e-07!16;UBERON:0000970!2.01e-07!20;UBERON:0001046!2.49e-07!19;UBERON:0004122!2.56e-07!15;UBERON:0000477!2.61e-07!286;UBERON:0004876!2.68e-07!20;UBERON:0000020!4.74e-07!23;UBERON:0004111!4.80e-07!241;UBERON:0000019!6.55e-07!19;UBERON:0000047!6.55e-07!19;UBERON:0004088!6.55e-07!19;UBERON:0003072!6.55e-07!19;UBERON:0003071!6.55e-07!19;UBERON:0004128!6.55e-07!19;UBERON:0002104!7.26e-07!21;UBERON:0000489!8.56e-07!32;UBERON:0003887!9.50e-07!21 | |||
|ontology_enrichment_uberon_v019=UBERON:0007625;1.44e-17;11!UBERON:0004211;1.07e-14;10!UBERON:0009773;1.07e-14;10!UBERON:0001231;1.07e-14;10!UBERON:0004810;1.07e-14;10!UBERON:0000488;8.22e-11;4!UBERON:0000019;2.34e-09;19!UBERON:0000047;2.34e-09;19!UBERON:0004088;2.34e-09;19!UBERON:0010230;2.34e-09;19!UBERON:0006555;2.69e-09;15!UBERON:0004819;2.69e-09;15!UBERON:0001285;2.69e-09;15!UBERON:0007684;2.69e-09;15!UBERON:0000020;4.65e-09;23!UBERON:0000970;8.53e-09;20!UBERON:0001032;1.36e-08;24!UBERON:0004456;1.36e-08;24!UBERON:0001778;2.33e-08;3!UBERON:0001775;2.33e-08;3!UBERON:0002104;2.74e-08;21!UBERON:0001456;2.74e-08;21!UBERON:0006853;4.31e-08;3!UBERON:0007685;4.31e-08;3!UBERON:0004134;4.31e-08;3!UBERON:0001801;4.94e-08;14!UBERON:0010371;3.19e-07;31!UBERON:0002203;3.55e-07;6!UBERON:0001768;3.55e-07;6!UBERON:0002200;3.55e-07;6!UBERON:0001225;6.92e-07;12!UBERON:0008987;6.92e-07;12!UBERON:0000974;8.22e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007625,1.75e-17,11;UBERON:0004810,1.76e-14,10;UBERON:0000488,7.88e-11,4;UBERON:0000162,2.44e-09,14;UBERON:0001353,2.44e-09,14;UBERON:0000163,2.44e-09,14;UBERON:0006866,2.44e-09,14;UBERON:0000164,2.44e-09,14;UBERON:0000931,2.44e-09,14;UBERON:0004211,3.68e-09,15;UBERON:0009773,3.68e-09,15;UBERON:0001231,3.68e-09,15;UBERON:0001285,3.68e-09,15;UBERON:0007684,3.68e-09,15;UBERON:0004208,3.68e-09,15;UBERON:0000019,9.39e-09,20;UBERON:0000047,9.39e-09,20;UBERON:0010312,9.39e-09,20;UBERON:0004088,9.39e-09,20;UBERON:0010230,9.39e-09,20;UBERON:0003072,9.39e-09,20;UBERON:0004128,9.39e-09,20;UBERON:0003071,9.39e-09,20;UBERON:0001008,1.04e-08,48;UBERON:0004122,1.26e-08,15;UBERON:0000020,1.28e-08,24;UBERON:0001032,1.28e-08,24;UBERON:0004456,1.28e-08,24;UBERON:0006555,1.69e-08,16;UBERON:0004819,1.69e-08,16;UBERON:0001046,1.72e-08,19;UBERON:0001778,2.23e-08,3;UBERON:0001775,2.23e-08,3;UBERON:0000970,3.00e-08,21;UBERON:0002104,3.00e-08,21;UBERON:0001801,5.19e-08,14;UBERON:0006853,7.03e-08,3;UBERON:0007685,7.03e-08,3;UBERON:0004134,7.03e-08,3;UBERON:0001456,8.60e-08,22;UBERON:0006554,9.76e-08,47;UBERON:0002203,3.45e-07,6;UBERON:0001768,3.45e-07,6;UBERON:0002200,3.45e-07,6;UBERON:0000119,4.72e-07,309 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,2.94880723801811,0.697801167972428,0,0,0.247532705920093,0.331397375727916,0,1.20538905604795,0.730310090387373,0.487932798790507,5.66356867153224,2.04000691244253,0.940364164434263,0.85870796139317,0.273748850145768,0.376627918784408,0,0,0,0,0,0,0,0,0,0,0,0.293600439334847,0.553995408531877,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164437904603676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.70700859703636,3.45228916977532,0,0,0.144846518960824,0,0,3.02511414925017,2.66075276955077,3.60122621341817,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0.347140501607594,0,0.419499436209906,0,0,0.258416759169329,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12663051166458,0.662045904066094,0,1.06400514659507,0,6.4049397437823,0.24666754841716,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.226864366320042,0,0,0,0,0.103052529238439,0.257640540045629,0,0,0,0,0,0.484938170456436,0,0,0,0.193260853163297,0,0,0,0,0,0,0,0,0,0,0,0,1.44375896333917,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.03428022223955,0,0,0,0,0,0,4.3299402607582,0.231860809950154,3.63966952131047,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.088048434013226,0,0,0,0,0,0,0,0,0,0,0.112131084345361,8.7192013766656,0,0.646358578788889,0,0,0.26593811658487,0,0,0,0,0,0,0,0,0,0,11.4546963282643,11.3299349618038,19.8946252452294,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24538298343828,1.50051156317903,0,0.207970861530807,0,0.157702415033935,0,0,0,0,0,0.184369168541703,0,0,0,0,0,0,0,0,0,0,0,0,0.128139149255701,0,0,0,0,0,0.164254312027618,0,0.116210378459959,0,1.40354529212299,0.0920809889358963,1.49258782613989,0.182091168006717,0.786746489756545,0.902399225814824,1.07821471946181,1.56869953835371,4.38417673959782,0.949964660035881,0,0.170093705276516,0,0,3.52230368807009,4.01351819083883,1.01950509218015,2.49322802678617,5.37299411333228,0,0.522870902049801,2.3080511260475,13.7766151193876,0.650756789328606,0.103041011647722,1.55668090191184,1.07262349896764,0,0,0,0,0.308097234229289,0.307007349452259,0,1.18162269355101,0.435050081742686,0.170453254832202,0.623224249527161,0,0,0,0,0,0.31481234683064,0.6970372701606,0,0.532306030317022,0,0.74129687641568,1.28812398067792,0,0.316379424718726,0.190630193923825,0,0,1.27281299170375,1.56989728039846,0.719489830333259,0.274537029736055,0,0.606547444719948,1.58510321173008,0.842516912477962,0,3.1682753652067,0,1.50149902548784,1.1312434556297,0,5.51365343546124,1.32687795048244,0.438450885253763,0,0,0.405820753925408,0.92947049429925,0.281695602532241,0.143411352204052,0,2.49669736036875,0.354761064070598,0.211107635297664,0.987884678879706,0,0.349934720244983,0,0,0,1.31801321087491,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.22520107990516,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.08182271390393,0,0,0,0,0,0,0,0,0,0,0,0,1.22439575525196,0,0,0,0.276283915531148,0,0,0,0,0.179736702294654,1.9692329214317,0,1.08507746200627,0,0,0,0,0,0,0,0,0.227586896570999,1.5255219017566,0,0,0,0,0,0,0,0,0,0,0,0.139423744278603,0.538651809526579,0.113942055847001,0,0,0.434589487688032,0,0.0915975934018623,0,0,0,0.166211681900156,1.57916962432026,0.588187602953219,1.51039428278258,0,2.54298526368606,0.210998064528027,1.14262965711403,0,19.6913662165303,0,0.530745387020035,0,0,0,0,0,0,0,0,0.391329237864179,0,2.76209081994573,0,0,0.126373159256976,0,0.311064574191741,0,0.992975867626496,0,0,1.99226682220855,0,6.07459084172958,0.195984794828755,0.435296032902013,0.873633341210151,0,0,0.0730893170861856,0,0.193978032976839,0,0.451961481561065,0.959293472527256,0.19871461170299,0,0.195551382734803,0,0,0,0,0,0,0,0.372757606696298,0,0,0,0.101998217636322,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0674035438541849,0.0984274815147488,0,0,0,0,0,0,0,0,0,0,0,0.367182116944987,0,0,0,0.714695326373367,0,0,0.542999601753713,1.72844298240254,0.653174720218818,1.19730191562487,0.492555124496034,0,0.79318464064088,0,0,0,0,0,0,0.106787412567695,0.628817220398664,0.414239055347196,0,0,0,0.638341257770182,0,0,0,0,0,0,0,0,0,0,0.124192805882767,0.138348634936231,0,4.24617529116614,0,0,0,0,0.149254802886874,0,0,0,0,0.889811221596536,0,0,0,0,0.159296767163702,0,0.155262956876259,0,0,0,1.20206087197775,8.75851987988229,2.44122439922797,0,0.537052785212442,0,1.19428766609585,0,0.343395705182793,0.336749488765919,0,0,0.214441591374926,0.260994291965212,0,2.31522474323834,0,0.537266523244462,0.308801447160972,5.04353314031026,1.41351316756705,8.48821768392025,0.844712203265363,0.256241518587947,0,0,0,0,0,0,0.327609848846413,2.70350199629091,0.211312123358627,0,0,0,0,0.184105950251841,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,20.4147254482133,3.53909170043221,0,1.84841065840541,0,0,0,0.0752103283492573,0,0,0,0,0.739280431085226,0,0,0,0,0,0,0,0,17.2479277313454,0,0,0,0,0,0,0,0,0,0,0.444925607568277,1.64835494986079,0,0,0,0,0,0.285906176706625,0,0,0,0.801711364730253,0,0,0,0,0,0,0.423387050190929,4.35303050233695,0,0,0,0,0,0,0,0,0,0.935757853848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| |||
|short_description=p5@VPS13D | |||
}} |
Latest revision as of 14:10, 16 September 2015
Short description: | p5@VPS13D |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_VPS13D_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000543710_5end |
EntrezGene: | VPS13D |
HGNC: | 23595 |
UniProt: | F5GZY2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
kidney tubule cell | 1.76e-14 | 10 |
nephron tubule epithelial cell | 1.76e-14 | 10 |
epithelial cell of nephron | 3.68e-09 | 15 |
ciliated cell | 2.23e-08 | 3 |
ciliated epithelial cell | 2.23e-08 | 3 |
multi-ciliated epithelial cell | 2.23e-08 | 3 |
non-pigmented ciliary epithelial cell | 2.23e-08 | 3 |
kidney cell | 6.49e-08 | 17 |
kidney epithelial cell | 6.49e-08 | 17 |
brush border epithelial cell | 7.03e-08 | 3 |
kidney cortex tubule cell | 7.03e-08 | 3 |
epithelial cell of proximal tubule | 7.03e-08 | 3 |
epithelial cell | 1.09e-07 | 253 |