FFCP PHASE1:Hg19::chr2:45168875..45168916,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6496 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10889 | |||
|TSSclassifier=strong | |||
|UniProt=O95343 | |||
|association_with_transcript=0bp_to_ENST00000260653_5end | |||
|cluster_id=chr2:45168875..45168916,+ | |||
|coexpression_cluster_id=C573 | |||
|description=CAGE_peak_1_at_SIX3_5end | |||
|id=chr2:45168875..45168916,+ | |||
|ontology_enrichment_celltype=CL:0002322!7.76e-09!5;CL:0000306!8.79e-08!4;CL:0002222!8.79e-08!4;CL:0002224!8.79e-08!4;CL:0000133!4.66e-07!59;CL:0000075!9.07e-07!27 | |||
|ontology_enrichment_celltype_v019=CL:0002322;3.07e-16;5!CL:0000306;3.67e-14;4!CL:0002222;3.67e-14;4!CL:0002224;3.67e-14;4!CL:0000075;4.21e-13;27!CL:0002586;9.76e-12;3!CL:0000064;1.23e-11;3!CL:0000067;1.23e-11;3!CL:0005012;1.23e-11;3!CL:0002304;1.23e-11;3!CL:0000147;2.99e-11;14!CL:0002321;1.19e-09;15!CL:0000149;6.81e-09;4!CL:0000710;1.84e-07;20 | |||
|ontology_enrichment_celltype_v019_2=CL:0002322,2.56e-16,5;CL:0000306,3.49e-14,4;CL:0002222,3.49e-14,4;CL:0002224,3.49e-14,4;CL:0000075,4.03e-13,27;CL:0002586,9.43e-12,3;CL:0000064,1.25e-11,3;CL:0000067,1.25e-11,3;CL:0005012,1.25e-11,3;CL:0002304,1.25e-11,3;CL:0000147,2.83e-11,14;CL:0000149,6.64e-09,4;CL:0000133,1.27e-08,59;CL:0000710,1.80e-07,20 | |||
|ontology_enrichment_development_v019=UBERON:0010122;2.69e-08;2 | |||
|ontology_enrichment_disease=DOID:171!8.66e-07!10 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003056!2.32e-32!61;UBERON:0002346!3.12e-32!90;UBERON:0003075!9.56e-30!86;UBERON:0007284!9.56e-30!86;UBERON:0000073!3.34e-25!94;UBERON:0001016!3.34e-25!94;UBERON:0005743!6.78e-25!86;UBERON:0001017!1.65e-20!82;UBERON:0002780!2.92e-20!41;UBERON:0001890!2.92e-20!41;UBERON:0006240!2.92e-20!41;UBERON:0003080!1.36e-19!42;UBERON:0000924!2.27e-19!173;UBERON:0006601!2.27e-19!173;UBERON:0007625!4.19e-19!11;UBERON:0001049!2.76e-18!57;UBERON:0005068!2.76e-18!57;UBERON:0006241!2.76e-18!57;UBERON:0007135!2.76e-18!57;UBERON:0004121!1.44e-17!169;UBERON:0002616!2.68e-16!59;UBERON:0000970!1.90e-15!20;UBERON:0000955!1.37e-14!69;UBERON:0006238!1.37e-14!69;UBERON:0002104!1.70e-14!21;UBERON:0000033!1.93e-14!123;UBERON:0000019!5.21e-14!19;UBERON:0000047!5.21e-14!19;UBERON:0004088!5.21e-14!19;UBERON:0003072!5.21e-14!19;UBERON:0003071!5.21e-14!19;UBERON:0004128!5.21e-14!19;UBERON:0002308!1.48e-13!9;UBERON:0000125!1.48e-13!9;UBERON:0000153!3.53e-13!129;UBERON:0007811!3.53e-13!129;UBERON:0000020!7.52e-13!23;UBERON:0001893!2.04e-12!34;UBERON:0002020!2.25e-12!34;UBERON:0003528!2.25e-12!34;UBERON:0001456!2.73e-12!21;UBERON:0001032!3.92e-12!24;UBERON:0004456!3.92e-12!24;UBERON:0009663!1.03e-11!7;UBERON:0002791!1.06e-11!33;UBERON:0001894!1.06e-11!7;UBERON:0006222!1.06e-11!7;UBERON:0002420!2.72e-11!9;UBERON:0007245!2.72e-11!9;UBERON:0010009!2.72e-11!9;UBERON:0010011!2.72e-11!9;UBERON:0000454!2.72e-11!9;UBERON:0001869!9.17e-11!32;UBERON:0000966!6.62e-10!5;UBERON:0005388!6.62e-10!5;UBERON:0001802!6.62e-10!5;UBERON:0000488!4.61e-08!4;UBERON:0000369!5.11e-08!4;UBERON:0002435!5.11e-08!4;UBERON:0000204!5.11e-08!4;UBERON:0010082!5.11e-08!4;UBERON:0005085!7.53e-08!29;UBERON:0010077!8.79e-08!4;UBERON:0005389!8.79e-08!4;UBERON:0000484!8.79e-08!4;UBERON:0002546!8.79e-08!4;UBERON:0000965!8.79e-08!4;UBERON:0001803!8.79e-08!4;UBERON:0003073!8.79e-08!4;UBERON:0005426!8.79e-08!4;UBERON:0001801!2.96e-07!14;UBERON:0007023!3.36e-07!115;UBERON:0003296!3.54e-07!4;UBERON:0010133!3.54e-07!4 | |||
|ontology_enrichment_uberon_v019=UBERON:0007625;3.31e-37;11!UBERON:0000970;4.65e-32;20!UBERON:0002104;2.32e-30;21!UBERON:0000019;4.59e-29;19!UBERON:0000047;4.59e-29;19!UBERON:0004088;4.59e-29;19!UBERON:0010230;4.59e-29;19!UBERON:0000020;2.08e-27;23!UBERON:0001032;4.08e-26;24!UBERON:0004456;4.08e-26;24!UBERON:0001456;5.49e-26;21!UBERON:0000966;1.77e-18;5!UBERON:0005388;1.77e-18;5!UBERON:0001802;1.77e-18;5!UBERON:0009663;1.67e-17;7!UBERON:0001894;5.71e-17;7!UBERON:0001801;6.59e-15;14!UBERON:0000488;9.14e-15;4!UBERON:0000369;1.13e-14;4!UBERON:0002435;1.13e-14;4!UBERON:0000204;1.13e-14;4!UBERON:0010077;3.67e-14;4!UBERON:0005389;3.67e-14;4!UBERON:0000484;3.67e-14;4!UBERON:0000965;3.67e-14;4!UBERON:0001803;3.67e-14;4!UBERON:0002420;1.87e-13;9!UBERON:0000125;1.87e-13;9!UBERON:0007245;1.87e-13;9!UBERON:0002308;1.87e-13;9!UBERON:0010009;1.87e-13;9!UBERON:0010011;1.87e-13;9!UBERON:0000454;1.87e-13;9!UBERON:0001781;9.76e-12;3!UBERON:0001782;9.76e-12;3!UBERON:0005383;1.16e-11;3!UBERON:0005382;1.16e-11;3!UBERON:0001778;1.23e-11;3!UBERON:0001775;1.23e-11;3!UBERON:0010371;3.59e-11;31!UBERON:0002780;1.00e-10;41!UBERON:0001890;1.00e-10;41!UBERON:0002203;7.65e-10;6!UBERON:0001768;7.65e-10;6!UBERON:0002200;7.65e-10;6!UBERON:0001873;2.69e-08;2!UBERON:0003296;3.59e-08;4!UBERON:0010133;3.59e-08;4!UBERON:0000007;4.70e-08;2!UBERON:0002784;5.66e-08;4!UBERON:0000073;7.11e-08;53!UBERON:0002616;7.11e-08;53!UBERON:0001897;8.87e-08;2!UBERON:0010225;8.87e-08;2!UBERON:0006876;9.91e-08;11!UBERON:0001875;1.40e-07;2!UBERON:0006514;1.40e-07;2!UBERON:0001444;2.51e-07;48!UBERON:0000033;3.79e-07;50!UBERON:0000922;7.55e-07;49 | |||
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|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.14494394852423,2.6006140763848,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.217010870715852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0.368277635987565,0,0,0,0,0,0,0,0.285012743741249,0,0,0,0,0.889509253863555,0,0,0,0,0,0.569212969109448,0,0,0,0,0,0,0,0.205601498999509,0,0,0,0,0.334231370655521,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201606743224732,0,0.289648807765598,0,0,0,0,0,0.144846518960824,0,0,36.1123001566739,18.6252693868554,17.8304614957046,0.654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.96764655938411,0,0.234321431833797,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.70763188581434,7.28913725768169,4.64775771478074,7.04895174104519,1.7662459561294,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.23525489432923,0,0,0,0,0,0,10.1031939417691,49.850074139283,4.81375646366869,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256686072559497,0,1.30139853857622,0.773288812777695,2.34522771468088,1.27587750330633,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,36.1594676414109,30.5053620500726,15.6181629438865,0.103041011647722,0.0915694648183434,0,0,0,0,0,0,0,0,0,0,0.170453254832202,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670302275535787,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.834245708559542,0,0,0,0,0,0,0,0,6.91754973972227,0,0,0,0,0,0,0.844016498463076,0,0,0,0,0,4.53478946137697,0,0,0,0,0,0,0,0,0,0,0.185536196323703,0,0,0,0,0,0,0,0,0,0.173624994933292,20.3720518737183,19.4160266186907,0,0.221158519862449,0,0.219385397153973,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,19.570394492921,27.5547583850701,34.2503994377894,0.67401132980677,0,7.96499115466153,0,0,0.485560759068186,0,0,0.61214552326098,1.51647791108371,0,0.103688191397247,2.65861549082874,0.992975867626496,4.70899377610838,1.19472429772959,0,0.693373365065693,0,0,0,0,0.171986032471617,0,0,0,0,0,21.6941511149311,0,0,0.189932387867636,0.977756913674015,0,0,0,0.576361668616424,7.3303421546186,0.171594997861965,0,0,0,0,0,0,0,6.60462317580768,2.32739144116388,0,0,0,0,0,0,0.199679000498991,0,0,0,0,0,0,0,0,0,0,0,0.681017030557878,0,0.275078873194468,0,0,0,0.485996453264197,0,0,0,0.844802692155252,0,0,0,0,0,0,0,0,2.39460383124975,0,0,0,0,0,0.129282956361551,0.26446520348538,0.171086837884329,0.704815022316672,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.285465333544967,0,0.936669811613763,0.724605143054126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.59952104248734,0.320075189082423,0,0,0,0.419638523158333,3.11038630016486,2.68578179737669,0,0.471797825567689,1.63814457288021,0.848662649770126,0.212574920101683,1.85903646388503,0,0,0,0.80057074828547,0,0,6.03754715906719,0,0,0,0.252071696221718,0,1.13032951942296,0,0,0,0,0,0,0,1.39241355481392,0,0.20170506870352,0,0,0.327543835020193,0,0.0675375846183947,0,0,0,13.1273954164373,0,0,0,0,1.60710550763486,0.336283722218824,15.1741401059158,8.42350107999801,0,0.115233987555779,0,0,0,0,0,0,24.8242632067283,0,0,0,0,43.672168491937,20.225742301789,0.116241425368125,1.73858272302579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,14.7460912564185,0,87.9524133963433,0.150962843566674,0,0,0,0,0.471353094203252,0.196308467114945,0.297046400327086,0,0,0,0,0,0,0,0,0,0,0.143339583151451,0.315543124386369,0.0679914901909147,0.436350690340377,0,0,0,0,0,0.109265571963696,0.126698501011437,0,0,0,0,1.51557396436479,2.14371304124943,9.12086383404657,3.62015485516633,0,0,0,0,0,0,0,0,0,0,0.0717222053926763,0,0.244209805832924,0,0,0.269475606319761,0,0,0,0,0,1.60284246151616 | |||
|short_description=p1@SIX3 | |||
}} |
Latest revision as of 09:36, 17 September 2015
Short description: | p1@SIX3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SIX3_5end |
Coexpression cluster: | C573_Lens_small_retina_Ciliary_Retinal_eye_putamen |
Association with transcript: | 0bp_to_ENST00000260653_5end |
EntrezGene: | SIX3 |
HGNC: | 10889 |
UniProt: | O95343 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 2.56e-16 | 5 |
crystallin accumulating cell | 3.49e-14 | 4 |
vertebrate lens cell | 3.49e-14 | 4 |
lens epithelial cell | 3.49e-14 | 4 |
columnar/cuboidal epithelial cell | 4.03e-13 | 27 |
retinal pigment epithelial cell | 9.43e-12 | 3 |
ciliated cell | 1.25e-11 | 3 |
ciliated epithelial cell | 1.25e-11 | 3 |
multi-ciliated epithelial cell | 1.25e-11 | 3 |
non-pigmented ciliary epithelial cell | 1.25e-11 | 3 |
pigment cell | 2.83e-11 | 14 |
visual pigment cell | 6.64e-09 | 4 |
neurectodermal cell | 1.27e-08 | 59 |
neurecto-epithelial cell | 1.80e-07 | 20 |