FF:11513-119H1: Difference between revisions

Latest revision as of 18:05, 4 June 2020

Name:	Smooth Muscle Cells - Tracheal, donor1
Species:	Human (Homo sapiens)
Library ID:	CNhs11329
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	lung
dev stage	NA
sex	NA
age	NA
cell type	smooth muscle cell
cell line	NA
company	Sciencell/3H
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	lot:572
catalog number	SC3415
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005939

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11329		CAGE		DRX008504		DRR009376

Accession ID Hg19

Library id		BAM		CTSS
CNhs11329		DRZ000801		DRZ002186

Accession ID Hg38

Library id		BAM		CTSS
CNhs11329		DRZ012151		DRZ013536

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

RNA-Seq Accession numbers

Method		Sample accession id
sRNA-Seq		SAMD00005939

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
SRhi10013.TAGCTT		sRNA-Seq		DRX037211		DRR041577

Accession ID Hg19

Library id		BAM		CTSS
SRhi10013.TAGCTT		DRZ007219

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.0357
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.344
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	-0.0761
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.523
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.0371
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0.198
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.401
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.588
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.562
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.242
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.0608
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.198
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.334
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.52
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.52
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.52
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11329

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.12
MA0003.1	MA0003.1	0.234
MA0004.1	MA0004.1	0.473
MA0006.1	MA0006.1	0.437
MA0007.1	MA0007.1	0.0304
MA0009.1	MA0009.1	0.404
MA0014.1	MA0014.1	0.999
MA0017.1	MA0017.1	0.0741
MA0018.2	MA0018.2	5.83823e-5
MA0019.1	MA0019.1	0.949
MA0024.1	MA0024.1	4.25106e-4
MA0025.1	MA0025.1	0.0113
MA0027.1	MA0027.1	0.457
MA0028.1	MA0028.1	0.0107
MA0029.1	MA0029.1	0.515
MA0030.1	MA0030.1	0.204
MA0031.1	MA0031.1	0.222
MA0035.2	MA0035.2	0.638
MA0038.1	MA0038.1	0.0471
MA0039.2	MA0039.2	0.844
MA0040.1	MA0040.1	0.286
MA0041.1	MA0041.1	0.283
MA0042.1	MA0042.1	0.781
MA0043.1	MA0043.1	2.6169e-4
MA0046.1	MA0046.1	0.985
MA0047.2	MA0047.2	0.935
MA0048.1	MA0048.1	0.784
MA0050.1	MA0050.1	1.23998e-5
MA0051.1	MA0051.1	0.00458
MA0052.1	MA0052.1	0.657
MA0055.1	MA0055.1	0.595
MA0057.1	MA0057.1	0.075
MA0058.1	MA0058.1	0.465
MA0059.1	MA0059.1	0.309
MA0060.1	MA0060.1	0.00516
MA0061.1	MA0061.1	0.616
MA0062.2	MA0062.2	5.1456e-6
MA0065.2	MA0065.2	0.00803
MA0066.1	MA0066.1	0.0444
MA0067.1	MA0067.1	0.0186
MA0068.1	MA0068.1	0.22
MA0069.1	MA0069.1	0.165
MA0070.1	MA0070.1	0.495
MA0071.1	MA0071.1	0.0259
MA0072.1	MA0072.1	0.374
MA0073.1	MA0073.1	0.948
MA0074.1	MA0074.1	0.173
MA0076.1	MA0076.1	0.00113
MA0077.1	MA0077.1	0.719
MA0078.1	MA0078.1	0.988
MA0079.2	MA0079.2	0.841
MA0080.2	MA0080.2	2.67259e-6
MA0081.1	MA0081.1	0.0685
MA0083.1	MA0083.1	3.31111e-4
MA0084.1	MA0084.1	0.849
MA0087.1	MA0087.1	0.747
MA0088.1	MA0088.1	0.285
MA0090.1	MA0090.1	0.0341
MA0091.1	MA0091.1	0.00217
MA0092.1	MA0092.1	0.149
MA0093.1	MA0093.1	0.527
MA0099.2	MA0099.2	0.00934
MA0100.1	MA0100.1	0.386
MA0101.1	MA0101.1	0.332
MA0102.2	MA0102.2	0.0488
MA0103.1	MA0103.1	0.455
MA0104.2	MA0104.2	0.937
MA0105.1	MA0105.1	0.143
MA0106.1	MA0106.1	0.0221
MA0107.1	MA0107.1	0.441
MA0108.2	MA0108.2	0.177
MA0111.1	MA0111.1	0.711
MA0112.2	MA0112.2	6.76047e-4
MA0113.1	MA0113.1	0.0574
MA0114.1	MA0114.1	0.0655
MA0115.1	MA0115.1	0.338
MA0116.1	MA0116.1	0.113
MA0117.1	MA0117.1	0.434
MA0119.1	MA0119.1	0.0357
MA0122.1	MA0122.1	0.778
MA0124.1	MA0124.1	0.306
MA0125.1	MA0125.1	0.912
MA0131.1	MA0131.1	0.202
MA0135.1	MA0135.1	0.142
MA0136.1	MA0136.1	3.21363e-8
MA0137.2	MA0137.2	0.0886
MA0138.2	MA0138.2	0.0866
MA0139.1	MA0139.1	0.605
MA0140.1	MA0140.1	0.843
MA0141.1	MA0141.1	0.0137
MA0142.1	MA0142.1	0.629
MA0143.1	MA0143.1	0.621
MA0144.1	MA0144.1	0.878
MA0145.1	MA0145.1	0.146
MA0146.1	MA0146.1	0.0635
MA0147.1	MA0147.1	0.751
MA0148.1	MA0148.1	0.56
MA0149.1	MA0149.1	0.366
MA0150.1	MA0150.1	0.548
MA0152.1	MA0152.1	0.333
MA0153.1	MA0153.1	0.0561
MA0154.1	MA0154.1	0.0929
MA0155.1	MA0155.1	0.0915
MA0156.1	MA0156.1	2.6739e-6
MA0157.1	MA0157.1	0.951
MA0159.1	MA0159.1	0.257
MA0160.1	MA0160.1	0.137
MA0162.1	MA0162.1	0.117
MA0163.1	MA0163.1	0.0244
MA0164.1	MA0164.1	0.514
MA0258.1	MA0258.1	0.0169
MA0259.1	MA0259.1	0.888

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11329

Novel motif	Logo	P-value
1	1	0.255
10	10	0.713
100	100	0.569
101	101	0.782
102	102	0.639
103	103	0.174
104	104	0.452
105	105	0.366
106	106	0.0435
107	107	0.0499
108	108	0.195
109	109	0.115
11	11	0.0591
110	110	0.134
111	111	0.344
112	112	0.329
113	113	0.274
114	114	0.131
115	115	0.296
116	116	0.129
117	117	0.616
118	118	0.592
119	119	0.216
12	12	0.675
120	120	0.528
121	121	0.811
122	122	0.886
123	123	0.371
124	124	0.148
125	125	0.56
126	126	0.556
127	127	0.194
128	128	0.0314
129	129	0.513
13	13	0.497
130	130	0.87
131	131	0.949
132	132	0.553
133	133	0.861
134	134	0.477
135	135	0.123
136	136	0.658
137	137	0.226
138	138	0.583
139	139	0.117
14	14	0.885
140	140	0.673
141	141	0.644
142	142	0.723
143	143	0.0284
144	144	0.457
145	145	0.256
146	146	0.537
147	147	0.288
148	148	0.232
149	149	0.00767
15	15	0.432
150	150	0.54
151	151	0.344
152	152	0.128
153	153	0.646
154	154	0.381
155	155	0.56
156	156	0.991
157	157	0.433
158	158	0.142
159	159	0.531
16	16	0.0556
160	160	0.0248
161	161	0.672
162	162	0.29
163	163	0.814
164	164	0.539
165	165	0.929
166	166	0.723
167	167	0.396
168	168	0.971
169	169	0.0399
17	17	0.133
18	18	0.0843
19	19	0.0448
2	2	0.315
20	20	0.409
21	21	0.122
22	22	0.0793
23	23	0.127
24	24	0.192
25	25	0.904
26	26	0.0527
27	27	0.154
28	28	0.287
29	29	0.587
3	3	0.252
30	30	0.305
31	31	0.298
32	32	1.34589e-6
33	33	0.311
34	34	0.231
35	35	0.6
36	36	0.642
37	37	0.185
38	38	0.319
39	39	0.217
4	4	0.474
40	40	0.0569
41	41	0.5
42	42	0.54
43	43	0.135
44	44	0.415
45	45	0.403
46	46	0.0772
47	47	0.255
48	48	0.275
49	49	0.141
5	5	0.713
50	50	0.42
51	51	0.358
52	52	0.258
53	53	0.875
54	54	0.324
55	55	0.246
56	56	0.237
57	57	0.294
58	58	0.865
59	59	0.0293
6	6	0.982
60	60	0.264
61	61	0.505
62	62	0.631
63	63	0.162
64	64	0.167
65	65	0.0654
66	66	0.775
67	67	0.806
68	68	0.0349
69	69	0.0743
7	7	0.855
70	70	0.0233
71	71	0.0693
72	72	0.708
73	73	0.0804
74	74	0.948
75	75	0.418
76	76	0.758
77	77	0.0329
78	78	0.843
79	79	0.117
8	8	0.0172
80	80	0.688
81	81	0.315
82	82	0.169
83	83	0.3
84	84	0.391
85	85	0.057
86	86	0.872
87	87	0.289
88	88	0.266
89	89	0.0346
9	9	0.258
90	90	0.402
91	91	0.136
92	92	0.0461
93	93	0.559
94	94	0.164
95	95	0.397
96	96	0.443
97	97	0.517
98	98	0.117
99	99	0.00371

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11329

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000184 human smooth muscle cell of trachea sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000192 (smooth muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0002600 (smooth muscle cell of trachea)

UBERON: Anatomy
0000468 (multi-cellular organism)
0003126 (trachea)
0002100 (trunk)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000466 (immaterial anatomical entity)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003103 (compound organ)
0009569 (subdivision of trunk)
0005178 (thoracic cavity element)
0000072 (segment of respiratory tract)
0005177 (trunk region element)
0000464 (anatomical space)
0001005 (respiratory airway)
0005181 (thoracic segment organ)
0010317 (germ layer / neural crest derived structure)
0007196 (tracheobronchial tree)
0000065 (respiratory tract)
0001558 (lower respiratory tract)
0001004 (respiratory system)
0002224 (thoracic cavity)
0000915 (thoracic segment of trunk)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000167 (smooth muscle cell sample)
0000184 (human smooth muscle cell of trachea sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000514 (smooth muscle myoblast)

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS008396
+|DRA_sample_Accession=CAGE@SAMD00005939
-|accession_numbers=CAGE;DRX008504;DRR009376;DRZ000801;DRZ002186
+|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005939
+|accession_numbers=CAGE;DRX008504;DRR009376;DRZ000801;DRZ002186;DRZ012151;DRZ013536
+|accession_numbers_RNASeq=sRNA-Seq;DRX037211;DRR041577;DRZ007219
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0003126,UBERON:0002100,UBERON:0000064,UBERON:0004119,UBERON:0000466,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003103,UBERON:0009569,UBERON:0005178,UBERON:0000072,UBERON:0005177,UBERON:0000464,UBERON:0001005,UBERON:0005181,UBERON:0010317,UBERON:0007196,UBERON:0000065,UBERON:0001558,UBERON:0001004,UBERON:0002224,UBERON:0000915
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0002600
@@ Line 9: / Line 11: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr6:134210243..134210257,+!p1@TCF21!2.21!159.74!TCF21;;chr11:46299539..46299620,+!p2@CREB3L1!1.46!46.88!CREB3L1;;chr16:86544113..86544145,+!p1@FOXF1!1.46!34.15!FOXF1;;chr19:13134772..13134822,+!p2@NFIX!1.39!34.73!NFIX;;chr6:1389789..1389821,+!p1@FOXF2!1.39!32.41!FOXF2;;chr11:46299199..46299233,+!p1@CREB3L1!1.38!115.18!CREB3L1;;chr17:46671108..46671147,-!p1@HOXB5!1.29!18.52!HOXB5;;chr6:34204921..34204939,+!p3@HMGA1!1.28!532.47!HMGA1;;chr19:46801639..46801699,+!p1@HIF3A!1.28!17.94!HIF3A;;chr11:65687362..65687436,+!p3@DRAP1!1.27!78.71!DRAP1;;chr17:59477233..59477263,+!p1@TBX2!1.19!44.57!TBX2;;chr2:19558373..19558392,-!p1@OSR1!1.18!38.20!OSR1;;chr11:65686802..65686818,+!p6@DRAP1!1.18!24.31!DRAP1;;chr14:61116183..61116208,-!p1@SIX1!1.17!52.67!SIX1;;chr2:239756671..239756732,+!p1@TWIST2!1.17!43.99!TWIST2;;chr11:47279504..47279563,+!p1@NR1H3!1.14!28.94!NR1H3;;chr5:92918919..92918942,+!p1@NR2F1!1.13!56.14!NR2F1;;chr2:239756739..239756755,+!p2@TWIST2!1.11!20.26!TWIST2;;chr12:66218255..66218304,+!p3@HMGA2!1.07!28.94!HMGA2;;chr17:46675420..46675465,-!p3@HOXB6!1.06!12.15!HOXB6;;chr11:65687222..65687240,+!p7@DRAP1!1.04!12.73!DRAP1;;chr17:46655704..46655718,-!p2@HOXB4!1.03!14.47!HOXB4;;chr6:1389989..1390019,+!p2@FOXF2!1.03!9.84!FOXF2;;chr12:66218836..66218888,+!p1@HMGA2!1.02!89.13!HMGA2;;chr8:49833948..49833973,-!p2@SNAI2!1.02!61.93!SNAI2;;chr6:34205372..34205412,+!p5@HMGA1!1.01!48.04!HMGA1;;chr15:96876966..96877017,+!p12@NR2F2!1.01!13.31!NR2F2;;chr7:27183263..27183284,-!p2@HOXA5!1.01!9.26!HOXA5;;chr12:66218904..66218913,+!p11@HMGA2!1.01!9.26!HMGA2;;chr11:46299443..46299459,+!p4@CREB3L1!0.99!8.68!CREB3L1;;chr8:25902876..25902936,-!p1@EBF2!0.99!8.68!EBF2;;chr9:132427972..132428056,+!p1@PRRX2!0.97!11.00!PRRX2;;chr11:46299186..46299195,+!p3@CREB3L1!0.97!9.26!CREB3L1;;chr12:66218598..66218645,+!p2@HMGA2!0.96!38.20!HMGA2;;chr7:19157248..19157268,-!p1@TWIST1!0.95!22.57!TWIST1;;chr11:65687158..65687216,+!p4@DRAP1!0.93!44.57!DRAP1;;chr7:19157043..19157088,-!p2@TWIST1!0.93!19.68!TWIST1;;chr19:13135582..13135600,+!p3@NFIX!0.93!7.52!NFIX;;chr20:42543441..42543497,+!p1@TOX2!0.90!32.41!TOX2;;chr17:46621937..46621966,-!p2@HOXB2!0.90!19.68!HOXB2;;chr19:45260775..45260838,+!p5@BCL3!0.90!9.26!BCL3;;chr14:29235961..29236008,+!p1@FOXG1!0.90!6.95!FOXG1;;chr17:59477275..59477286,+!p3@TBX2!0.89!9.26!TBX2;;chr19:13134457..13134462,+!p5@NFIX!0.88!12.15!NFIX;;chr20:50721803..50721857,-!p2@ZFP64!0.87!10.42!ZFP64;;chr12:66218923..66218934,+!p14@HMGA2!0.87!6.37!HMGA2;;chr9:132427883..132427951,+!p2@PRRX2!0.87!6.37!PRRX2;;chr2:85981222..85981259,+!p2@ATOH8!0.85!10.42!ATOH8;;chr1:170632285..170632309,+!p1@PRRX1!0.85!6.95!PRRX1;;chr15:42749722..42749739,-!p2@ZFP106!0.84!11.00!ZFP106;;chr17:1959369..1959388,+!p2@HIC1!0.83!16.21!HIC1;;chr1:170633348..170633399,+!p2@PRRX1!0.83!8.10!PRRX1;;chr6:34204672..34204692,+!p1@HMGA1!0.82!680.06!HMGA1;;chr20:39946361..39946379,-!p2@ZHX3!0.81!17.36!ZHX3;;chr11:65686732..65686756,+!p2@DRAP1!0.80!24.31!DRAP1;;chr19:45261550..45261641,+!p6@BCL3!0.80!9.26!BCL3;;chr15:96874145..96874166,+!p7@NR2F2!0.79!10.42!NR2F2;;chr17:46655672..46655697,-!p3@HOXB4!0.79!5.21!HOXB4;;chr4:174451370..174451387,-!p1@HAND2!0.79!5.21!HAND2;;chr17:1958388..1958404,+!p1@HIC1!0.78!35.31!HIC1;;chr6:1610293..1610310,+!p1@FOXC1!0.78!8.68!FOXC1;;chr11:47279248..47279264,+!p3@NR1H3!0.78!5.79!NR1H3;;chr14:61116168..61116180,-!p2@SIX1!0.78!5.79!SIX1;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.77!5.21!GLIS1;;chr8:128748308..128748324,+!p2@MYC!0.76!144.69!MYC;;chr1:8926441..8926473,-!p10@ENO1!0.76!7.52!ENO1;;chr19:13106214..13106382,+!p1@NFIX!0.75!119.81!NFIX;;chr12:57504975..57505019,-!p2@STAT6!0.75!20.84!STAT6;;chr17:7492684..7492778,-!p2@SOX15!0.75!10.42!SOX15;;chr12:54694758..54694805,-!p1@NFE2!0.75!5.79!NFE2;;chr14:29236269..29236285,+!p3@FOXG1!0.75!4.63!FOXG1;;chr7:27142290..27142310,-!p1@HOXA2!0.75!4.63!HOXA2;;chr17:46675558..46675577,-!p2@HOXB6!0.75!4.63!HOXB6;;chr17:59477403..59477414,+!p4@TBX2!0.75!4.63!TBX2;;chrY:21906594..21906622,-!p1@KDM5D!0.75!4.63!KDM5D;;chr15:96873984..96873999,+!p3@NR2F2!0.74!36.46!NR2F2;;chr3:52001426..52001447,-!p3@PCBP4!0.74!13.89!PCBP4;;chr3:12329397..12329433,+!p2@PPARG!0.74!11.00!PPARG;;chr10:77161133..77161176,-!p3@ZNF503!0.74!10.42!ZNF503;;chr17:59477197..59477212,+!p2@TBX2!0.74!8.10!TBX2;;chr12:115121962..115121987,-!p1@TBX3!0.73!41.09!TBX3;;chr6:1312325..1312340,+!p1@FOXQ1!0.73!7.52!FOXQ1;;chr20:42543506..42543549,+!p2@TOX2!0.72!11.00!TOX2;;chr5:72744445..72744466,-!p2@FOXD1!0.72!7.52!FOXD1;;chr5:72744594..72744609,-!p1@FOXD1!0.71!20.84!FOXD1;;chr3:12329358..12329393,+!p3@PPARG!0.71!11.00!PPARG;;chr15:96874244..96874259,+!p5@NR2F2!0.71!11.00!NR2F2;;chr17:46621101..46621143,-!p7@HOXB2!0.71!5.79!HOXB2;;chr5:158526459..158526481,-!p2@EBF1!0.71!5.79!EBF1;;chr8:49833978..49833996,-!p1@SNAI2!0.70!93.18!SNAI2;;chr17:46655730..46655791,-!p1@HOXB4!0.70!11.00!HOXB4;;chr15:67418177..67418204,+!p9@SMAD3!0.70!4.05!SMAD3;;chr16:86600870..86600921,+!p2@FOXC2!0.70!4.05!FOXC2;;chr7:27153454..27153469,-!p2@HOXA3!0.70!4.05!HOXA3;;chr7:27183291..27183324,-!p1@HOXA5!0.70!4.05!HOXA5;;chr12:114845810..114845824,-!p1@TBX5!0.70!4.05!TBX5;;chr2:46524537..46524553,+!p1@EPAS1!0.69!436.98!EPAS1;;chr3:52001396..52001425,-!p4@PCBP4!0.69!7.52!PCBP4;;chr16:86600426..86600441,+!p1@FOXC2!0.68!10.42!FOXC2;;chr11:113930425..113930471,+!p1@ZBTB16!0.68!5.79!ZBTB16;;chr19:13136130..13136165,+!p6@NFIX!0.68!5.21!NFIX;;chr3:52001448..52001478,-!p2@PCBP4!0.67!59.61!PCBP4;;chr11:65686952..65686975,+!p5@DRAP1!0.67!23.15!DRAP1;;chr17:61919985..61920012,-!p3@SMARCD2!0.67!9.84!SMARCD2;;chr3:141105705..141105770,+!p4@ZBTB38!0.67!4.63!ZBTB38;;chr5:92918956..92918969,+!p4@NR2F1!0.67!4.05!NR2F1;;chr15:96874012..96874042,+!p2@NR2F2!0.66!37.62!NR2F2;;chr17:61919812..61919833,-!p6@SMARCD2!0.66!4.63!SMARCD2;;chr20:39317868..39317884,-!p1@MAFB!0.65!48.04!MAFB;;chr12:53614115..53614154,-!p1@RARG!0.65!21.41!RARG;;chr1:170632250..170632277,+!p7@PRRX1!0.65!3.47!PRRX1;;chr17:46621146..46621180,-!p10@HOXB2!0.65!3.47!HOXB2;;chr17:46682321..46682362,-!p1@HOXB6!0.65!3.47!HOXB6;;chr2:5832508..5832524,+!p1@SOX11!0.65!3.47!SOX11;;chr6:34204973..34204990,+!p4@HMGA1!0.64!53.25!HMGA1;;chr14:21994337..21994442,-!p1@SALL2!0.64!10.42!SALL2;;chr1:221053049..221053075,+!p3@HLX!0.64!6.37!HLX;;chr17:46688334..46688385,-!p1@HOXB7!0.64!5.21!HOXB7;;chr9:35732647..35732678,+!p2@CREB3!0.63!21.41!CREB3;;chr11:65667884..65667895,-!p2@FOSL1!0.63!14.47!FOSL1;;chr18:3451646..3451691,+!p3@TGIF1!0.63!9.84!TGIF1;;chr5:178368186..178368238,+!p1@ZNF454!0.63!6.37!ZNF454;;chr11:65687243..65687276,+!p8@DRAP1!0.63!4.63!DRAP1;;chr11:65686776..65686787,+!p9@DRAP1!0.63!4.05!DRAP1;;chr5:92919068..92919082,+!p5@NR2F1!0.63!4.05!NR2F1;;chr8:48650715..48650735,-!p1@CEBPD!0.62!491.38!CEBPD;;chr19:18392236..18392248,-!p2@JUND!0.62!24.89!JUND;;chr12:54447599..54447630,+!p3@HOXC4!0.62!4.05!HOXC4;;chr21:47063625..47063658,+!p1@PCBP3!0.61!15.63!PCBP3;;chr3:126076242..126076257,-!p1@KLF15!0.61!4.05!KLF15;;chr17:3571863..3571881,-!p1@TAX1BP3!0.60!259.29!TAX1BP3;;chr17:46126136..46126152,+!p1@NFE2L1!0.60!186.37!NFE2L1;;chr19:44037546..44037594,+!p1@ZNF575!0.60!6.95!ZNF575;;chr19:42788611..42788634,+!p2@CIC!0.60!5.21!CIC;;chr15:96869255..96869291,+!p6@NR2F2!0.59!5.79!NR2F2;;chr11:113930291..113930339,+!p2@ZBTB16!0.59!5.21!ZBTB16;;chr2:85980951..85981004,+!p1@ATOH8!0.59!5.21!ATOH8;;chr3:12330560..12330579,+!p1@PPARG!0.59!3.47!PPARG;;chr4:174450089..174450153,-!p2@HAND2!0.59!2.89!HAND2;;chr15:96877047..96877056,+!p39@NR2F2!0.59!2.89!NR2F2;;chrY:2803415..2803468,+!p1@ZFY!0.59!2.89!ZFY;;chr5:2751762..2751784,-!p1@IRX2!0.59!2.89!IRX2;;chr6:1389824..1389840,+!p3@FOXF2!0.59!2.89!FOXF2;;chr7:101917447..101917479,+!p4@CUX1!0.59!2.89!CUX1;;chr7:27169801..27169844,-!p2@HOXA4!0.59!2.89!HOXA4;;chr11:113930401..113930422,+!p3@ZBTB16!0.59!2.89!ZBTB16;;chr12:115121770..115121781,-!p4@TBX3!0.59!2.89!TBX3;;chr19:47523058..47523114,+!p1@NPAS1!0.59!2.89!NPAS1;;chr17:41622765..41622821,-!p2@ETV4!0.58!4.63!ETV4;;chr15:96869114..96869160,+!p11@NR2F2!0.58!4.05!NR2F2;;chr19:13136241..13136258,+!p7@NFIX!0.58!4.05!NFIX;;chr15:96869222..96869251,+!p18@NR2F2!0.58!3.47!NR2F2;;chr19:3366570..3366619,+!p1@NFIC!0.57!107.65!NFIC;;chr9:35732592..35732640,+!p1@CREB3!0.57!44.57!CREB3;;chr3:126076264..126076305,-!p2@KLF15!0.57!4.05!KLF15;;chr12:54772960..54773015,-!p3@ZNF385A!0.56!15.63!ZNF385A;;chr11:61520075..61520136,+!p1@C11orf9!0.56!6.37!C11orf9;;chr12:66218183..66218209,+!p4@HMGA2!0.56!5.79!HMGA2;;chr7:100076723..100076737,-!p3@TSC22D4!0.56!4.63!TSC22D4;;chr6:43140095..43140145,+!p5@SRF!0.56!3.47!SRF;;chr5:92919375..92919438,+!p6@NR2F1!0.56!2.89!NR2F1;;chr6:43140149..43140177,+!p8@SRF!0.56!2.89!SRF;;chr3:157823517..157823562,-!p1@SHOX2!0.56!2.89!SHOX2;;chr11:65667846..65667868,-!p1@FOSL1!0.55!85.08!FOSL1;;chr17:17726907..17726958,-!p2@SREBF1!0.55!19.68!SREBF1;;chr1:8938766..8938774,-!p2@ENO1!0.54!217.62!ENO1;;chr4:2263809..2263854,-!p1@MXD4!0.54!121.54!MXD4;;chr17:46622070..46622109,-!p1@HOXB2!0.54!6.37!HOXB2;;chr19:3366625..3366629,+!p4@NFIC!0.54!4.05!NFIC;;chr1:170633262..170633285,+!p3@PRRX1!0.54!2.89!PRRX1;;chr17:61920023..61920110,-!p1@SMARCD2!0.53!42.83!SMARCD2;;chr10:77161504..77161530,-!p1@ZNF503!0.53!40.51!ZNF503;;chr10:77161533..77161546,-!p2@ZNF503!0.53!11.58!ZNF503;;chr19:56652621..56652641,+!p2@ZNF444!0.53!5.79!ZNF444;;chr17:41623259..41623278,-!p7@ETV4!0.53!2.89!ETV4;;chr11:65686855..65686946,+!p1@DRAP1!0.52!227.46!DRAP1;;chr3:150126759..150126784,+!p2@TSC22D2!0.52!13.31!TSC22D2;;chr19:49864746..49864780,-!p2@TEAD2!0.52!3.47!TEAD2;;chr5:72743793..72743855,-!p4@FOXD1!0.52!2.89!FOXD1;;chr6:1389871..1389876,+!p4@FOXF2!0.52!2.32!FOXF2;;chr2:102091144..102091183,-!p2@RFX8!0.52!2.32!RFX8;;chr2:85981008..85981025,+!p7@ATOH8!0.52!2.32!ATOH8;;chr11:46333934..46333963,+!p5@CREB3L1!0.52!2.32!CREB3L1;;chr12:115121802..115121814,-!p5@TBX3!0.52!2.32!TBX3;;chr12:115122318..115122331,-!p2@TBX3!0.52!2.32!TBX3;;chr14:29234581..29234601,+!p2@FOXG1!0.52!2.32!FOXG1;;chr14:29237009..29237049,+!p4@FOXG1!0.52!2.32!FOXG1;;ch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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000056;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000187;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000192;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002600;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000065;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001558;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002385;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003126;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005181;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0008947
 |ffid_belonging_in_development=CL:0000355,CL:0000222,CL:0000514
 |fonse_cell_line=
@@ Line 40: / Line 44: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Tracheal%252c%2520donor1.CNhs11329.11513-119H1.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Tracheal%252c%2520donor1.CNhs11329.11513-119H1.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Tracheal%252c%2520donor1.CNhs11329.11513-119H1.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Tracheal%252c%2520donor1.CNhs11329.11513-119H1.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Tracheal%252c%2520donor1.CNhs11329.11513-119H1.hg38.nobarcode.ctss.bed.gz
 |id=FF:11513-119H1
 |is_a=EFO:0002091;;FF:0000184
 |is_obsolete=
 |library_id=CNhs11329
-|library_ids=CNhs11329
+|library_id_phase_based=2:CNhs11329
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11513
+|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10013.TAGCTT.11513
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11513
+|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10013.TAGCTT.11513
 |name=Smooth Muscle Cells - Tracheal, donor1
 |namespace=FANTOM5
@@ Line 50: / Line 65: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11329,LSID768,release014,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=SRhi10013,,,
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@@ Line 66: / Line 82: @@
 |rna_tube_id=119H1
 |rna_weight_ug=10
+|rnaseq_library_id=SRhi10013.TAGCTT
 |sample_age=
 |sample_category=primary cells
@@ Line 89: / Line 106: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11513-119H1;search_select_hide=table117:FF:11513-119H1
 }}

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