FF:11512-119G9: Difference between revisions

Latest revision as of 18:05, 4 June 2020

Name:	Smooth Muscle Cells - Bronchial, donor1
Species:	Human (Homo sapiens)
Library ID:	CNhs11328
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9, 10
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	lung
dev stage	NA
sex	NA
age	NA
cell type	smooth muscle cell
cell line	NA
company	Sciencell/3H
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	lot:3982
catalog number	SC3405
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005960

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11328		CAGE		DRX008478		DRR009350

Accession ID Hg19

Library id		BAM		CTSS
CNhs11328		DRZ000775		DRZ002160

Accession ID Hg38

Library id		BAM		CTSS
CNhs11328		DRZ012125		DRZ013510

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

RNA-Seq Accession numbers

Method		Sample accession id
sRNA-Seq		SAMD00005960

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
SRhi10004.TAGCTT		sRNA-Seq		DRX037040		DRR041406

Accession ID Hg19

Library id		BAM		CTSS
SRhi10004.TAGCTT		DRZ007048

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.0994
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.189
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0.099
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	-0.126
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.561
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.212
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0.179
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.247
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.00764
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.0187
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.33
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.0136
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.372
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.0989
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.099
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.484
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.362
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.179
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11328

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.175
MA0003.1	MA0003.1	0.285
MA0004.1	MA0004.1	0.301
MA0006.1	MA0006.1	0.439
MA0007.1	MA0007.1	0.0453
MA0009.1	MA0009.1	0.258
MA0014.1	MA0014.1	0.984
MA0017.1	MA0017.1	0.0862
MA0018.2	MA0018.2	0.00167
MA0019.1	MA0019.1	0.697
MA0024.1	MA0024.1	0.0294
MA0025.1	MA0025.1	0.113
MA0027.1	MA0027.1	0.699
MA0028.1	MA0028.1	0.017
MA0029.1	MA0029.1	0.608
MA0030.1	MA0030.1	0.218
MA0031.1	MA0031.1	0.00469
MA0035.2	MA0035.2	0.265
MA0038.1	MA0038.1	0.386
MA0039.2	MA0039.2	0.446
MA0040.1	MA0040.1	0.241
MA0041.1	MA0041.1	0.308
MA0042.1	MA0042.1	0.772
MA0043.1	MA0043.1	9.10403e-5
MA0046.1	MA0046.1	0.0226
MA0047.2	MA0047.2	0.675
MA0048.1	MA0048.1	0.513
MA0050.1	MA0050.1	1.26428e-6
MA0051.1	MA0051.1	0.00183
MA0052.1	MA0052.1	0.0123
MA0055.1	MA0055.1	0.201
MA0057.1	MA0057.1	0.133
MA0058.1	MA0058.1	0.243
MA0059.1	MA0059.1	0.215
MA0060.1	MA0060.1	0.315
MA0061.1	MA0061.1	0.733
MA0062.2	MA0062.2	6.4049e-6
MA0065.2	MA0065.2	0.033
MA0066.1	MA0066.1	0.195
MA0067.1	MA0067.1	0.0309
MA0068.1	MA0068.1	0.462
MA0069.1	MA0069.1	0.407
MA0070.1	MA0070.1	0.00661
MA0071.1	MA0071.1	0.0246
MA0072.1	MA0072.1	0.767
MA0073.1	MA0073.1	0.802
MA0074.1	MA0074.1	0.221
MA0076.1	MA0076.1	9.44043e-4
MA0077.1	MA0077.1	0.362
MA0078.1	MA0078.1	0.598
MA0079.2	MA0079.2	0.89
MA0080.2	MA0080.2	1.50633e-5
MA0081.1	MA0081.1	0.0278
MA0083.1	MA0083.1	9.13051e-8
MA0084.1	MA0084.1	0.793
MA0087.1	MA0087.1	0.746
MA0088.1	MA0088.1	0.495
MA0090.1	MA0090.1	0.0188
MA0091.1	MA0091.1	0.00855
MA0092.1	MA0092.1	0.132
MA0093.1	MA0093.1	0.338
MA0099.2	MA0099.2	3.86915e-4
MA0100.1	MA0100.1	0.345
MA0101.1	MA0101.1	0.604
MA0102.2	MA0102.2	0.0117
MA0103.1	MA0103.1	0.631
MA0104.2	MA0104.2	0.745
MA0105.1	MA0105.1	0.531
MA0106.1	MA0106.1	0.0542
MA0107.1	MA0107.1	0.7
MA0108.2	MA0108.2	5.49168e-7
MA0111.1	MA0111.1	0.369
MA0112.2	MA0112.2	0.00407
MA0113.1	MA0113.1	0.0517
MA0114.1	MA0114.1	0.0921
MA0115.1	MA0115.1	0.442
MA0116.1	MA0116.1	0.299
MA0117.1	MA0117.1	0.396
MA0119.1	MA0119.1	0.0551
MA0122.1	MA0122.1	0.891
MA0124.1	MA0124.1	0.196
MA0125.1	MA0125.1	0.952
MA0131.1	MA0131.1	0.189
MA0135.1	MA0135.1	0.18
MA0136.1	MA0136.1	6.7214e-7
MA0137.2	MA0137.2	0.00893
MA0138.2	MA0138.2	0.324
MA0139.1	MA0139.1	0.587
MA0140.1	MA0140.1	0.425
MA0141.1	MA0141.1	0.022
MA0142.1	MA0142.1	0.814
MA0143.1	MA0143.1	0.573
MA0144.1	MA0144.1	0.513
MA0145.1	MA0145.1	0.17
MA0146.1	MA0146.1	0.0484
MA0147.1	MA0147.1	0.648
MA0148.1	MA0148.1	0.959
MA0149.1	MA0149.1	0.491
MA0150.1	MA0150.1	0.747
MA0152.1	MA0152.1	0.548
MA0153.1	MA0153.1	0.131
MA0154.1	MA0154.1	0.159
MA0155.1	MA0155.1	0.0769
MA0156.1	MA0156.1	8.52834e-6
MA0157.1	MA0157.1	0.0676
MA0159.1	MA0159.1	0.571
MA0160.1	MA0160.1	0.0579
MA0162.1	MA0162.1	0.114
MA0163.1	MA0163.1	0.164
MA0164.1	MA0164.1	0.663
MA0258.1	MA0258.1	0.0302
MA0259.1	MA0259.1	0.795

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11328

Novel motif	Logo	P-value
1	1	0.67
10	10	0.791
100	100	0.644
101	101	0.753
102	102	0.895
103	103	0.404
104	104	0.292
105	105	0.124
106	106	0.0407
107	107	0.0261
108	108	0.359
109	109	0.068
11	11	0.046
110	110	0.111
111	111	0.764
112	112	0.672
113	113	0.466
114	114	0.626
115	115	0.4
116	116	0.0815
117	117	0.9
118	118	0.684
119	119	0.473
12	12	0.343
120	120	0.336
121	121	0.441
122	122	0.616
123	123	0.0593
124	124	0.222
125	125	0.366
126	126	0.497
127	127	0.384
128	128	0.0389
129	129	0.242
13	13	0.398
130	130	0.149
131	131	0.789
132	132	0.221
133	133	0.864
134	134	0.212
135	135	0.173
136	136	0.509
137	137	0.146
138	138	0.344
139	139	0.409
14	14	0.953
140	140	0.512
141	141	0.408
142	142	0.781
143	143	0.0421
144	144	0.98
145	145	0.151
146	146	0.239
147	147	0.386
148	148	0.932
149	149	0.036
15	15	0.901
150	150	0.257
151	151	0.478
152	152	0.176
153	153	0.402
154	154	0.343
155	155	0.4
156	156	0.631
157	157	0.0742
158	158	0.151
159	159	0.713
16	16	0.103
160	160	0.0154
161	161	0.592
162	162	0.202
163	163	0.706
164	164	0.778
165	165	0.237
166	166	0.836
167	167	0.268
168	168	0.839
169	169	0.0644
17	17	0.135
18	18	0.103
19	19	0.0537
2	2	0.23
20	20	0.477
21	21	0.464
22	22	0.0774
23	23	0.157
24	24	0.264
25	25	0.865
26	26	0.0244
27	27	0.228
28	28	0.303
29	29	0.973
3	3	0.441
30	30	0.166
31	31	0.261
32	32	1.18824e-5
33	33	0.359
34	34	0.139
35	35	0.968
36	36	0.881
37	37	0.27
38	38	0.386
39	39	0.222
4	4	0.314
40	40	0.0273
41	41	0.513
42	42	0.639
43	43	0.194
44	44	0.739
45	45	0.321
46	46	0.0896
47	47	0.32
48	48	0.24
49	49	0.178
5	5	0.924
50	50	0.394
51	51	0.284
52	52	0.365
53	53	0.822
54	54	0.251
55	55	0.533
56	56	0.231
57	57	0.231
58	58	0.799
59	59	0.0286
6	6	0.644
60	60	0.272
61	61	0.644
62	62	0.944
63	63	0.188
64	64	0.121
65	65	0.033
66	66	0.307
67	67	0.758
68	68	0.109
69	69	0.0352
7	7	0.748
70	70	0.099
71	71	0.127
72	72	0.858
73	73	0.103
74	74	0.92
75	75	0.795
76	76	0.49
77	77	0.0241
78	78	0.971
79	79	0.438
8	8	0.0451
80	80	0.643
81	81	0.521
82	82	0.452
83	83	0.89
84	84	0.501
85	85	0.159
86	86	0.875
87	87	0.442
88	88	0.223
89	89	0.202
9	9	0.183
90	90	0.0306
91	91	0.25
92	92	0.22
93	93	0.957
94	94	0.261
95	95	0.249
96	96	0.805
97	97	0.391
98	98	0.164
99	99	0.00262

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11328

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000179 human bronchial smooth muscle cell sample
FF:0000998 adult tissue sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000192 (smooth muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0002598 (bronchial smooth muscle cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0002100 (trunk)
0000479 (tissue)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000466 (immaterial anatomical entity)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009569 (subdivision of trunk)
0005178 (thoracic cavity element)
0000072 (segment of respiratory tract)
0005177 (trunk region element)
0000464 (anatomical space)
0005181 (thoracic segment organ)
0010317 (germ layer / neural crest derived structure)
0007196 (tracheobronchial tree)
0002185 (bronchus)
0000065 (respiratory tract)
0001558 (lower respiratory tract)
0001004 (respiratory system)
0002224 (thoracic cavity)
0000915 (thoracic segment of trunk)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000167 (smooth muscle cell sample)
0000004 (tissue sample)
0000179 (human bronchial smooth muscle cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000514 (smooth muscle myoblast)

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS008370
+|DRA_sample_Accession=CAGE@SAMD00005960
-|accession_numbers=CAGE;DRX008478;DRR009350;DRZ000775;DRZ002160
+|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005960
+|accession_numbers=CAGE;DRX008478;DRR009350;DRZ000775;DRZ002160;DRZ012125;DRZ013510
+|accession_numbers_RNASeq=sRNA-Seq;DRX037040;DRR041406;DRZ007048
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0002100,UBERON:0000479,UBERON:0000064,UBERON:0004119,UBERON:0000466,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009569,UBERON:0005178,UBERON:0000072,UBERON:0005177,UBERON:0000464,UBERON:0005181,UBERON:0010317,UBERON:0007196,UBERON:0002185,UBERON:0000065,UBERON:0001558,UBERON:0001004,UBERON:0002224,UBERON:0000915
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0002598
@@ Line 9: / Line 11: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr6:134210243..134210257,+!p1@TCF21!2.51!325.50!TCF21;;chr17:46671108..46671147,-!p1@HOXB5!1.85!69.86!HOXB5;;chr2:19558373..19558392,-!p1@OSR1!1.64!111.83!OSR1;;chr17:46675558..46675577,-!p2@HOXB6!1.59!37.62!HOXB6;;chr19:46801639..46801699,+!p1@HIF3A!1.56!35.06!HIF3A;;chr17:59477233..59477263,+!p1@TBX2!1.49!90.33!TBX2;;chr17:46675420..46675465,-!p3@HOXB6!1.48!33.52!HOXB6;;chr16:86544113..86544145,+!p1@FOXF1!1.47!34.80!FOXF1;;chr11:46299199..46299233,+!p1@CREB3L1!1.46!137.67!CREB3L1;;chr11:46299539..46299620,+!p2@CREB3L1!1.46!46.32!CREB3L1;;chr6:34204921..34204939,+!p3@HMGA1!1.41!717.54!HMGA1;;chr12:66218255..66218304,+!p3@HMGA2!1.33!54.25!HMGA2;;chr14:61116183..61116208,-!p1@SIX1!1.32!73.70!SIX1;;chr11:65686802..65686818,+!p6@DRAP1!1.32!34.55!DRAP1;;chr17:46675539..46675551,-!p7@HOXB6!1.32!19.96!HOXB6;;chr17:59477275..59477286,+!p3@TBX2!1.25!22.26!TBX2;;chr11:65687362..65687436,+!p3@DRAP1!1.21!68.58!DRAP1;;chr17:59477197..59477212,+!p2@TBX2!1.21!25.85!TBX2;;chr17:46655704..46655718,-!p2@HOXB4!1.21!22.77!HOXB4;;chr19:13134772..13134822,+!p2@NFIX!1.17!20.47!NFIX;;chr17:46622070..46622109,-!p1@HOXB2!1.16!29.68!HOXB2;;chr6:1389789..1389821,+!p1@FOXF2!1.15!17.91!FOXF2;;chr2:239756671..239756732,+!p1@TWIST2!1.13!40.43!TWIST2;;chr17:59529743..59529798,+!p1@TBX4!1.12!12.28!TBX4;;chr11:65686732..65686756,+!p2@DRAP1!1.11!49.90!DRAP1;;chr5:92918919..92918942,+!p1@NR2F1!1.08!49.90!NR2F1;;chr2:239756739..239756755,+!p2@TWIST2!1.08!18.94!TWIST2;;chr17:46675469..46675481,-!p4@HOXB6!1.08!11.00!HOXB6;;chr5:72744594..72744609,-!p1@FOXD1!1.07!49.39!FOXD1;;chr17:46675586..46675600,-!p6@HOXB6!1.05!10.24!HOXB6;;chr11:65667846..65667868,-!p1@FOSL1!1.04!262.81!FOSL1;;chr6:34204672..34204692,+!p1@HMGA1!1.01!1055.58!HMGA1;;chr12:66218836..66218888,+!p1@HMGA2!0.99!84.45!HMGA2;;chr12:114845810..114845824,-!p1@TBX5!0.99!8.70!TBX5;;chr5:72744445..72744466,-!p2@FOXD1!0.98!14.59!FOXD1;;chr11:65687222..65687240,+!p7@DRAP1!0.96!10.49!DRAP1;;chr20:42543441..42543497,+!p1@TOX2!0.95!37.11!TOX2;;chr6:34205372..34205412,+!p5@HMGA1!0.94!40.18!HMGA1;;chr9:132427972..132428056,+!p1@PRRX2!0.94!10.24!PRRX2;;chr12:115122318..115122331,-!p2@TBX3!0.94!7.68!TBX3;;chr12:66218598..66218645,+!p2@HMGA2!0.93!36.08!HMGA2;;chr11:65687243..65687276,+!p8@DRAP1!0.92!9.98!DRAP1;;chr17:46621101..46621143,-!p7@HOXB2!0.91!9.72!HOXB2;;chr17:46671504..46671541,-!p2@HOXB5!0.91!7.17!HOXB5;;chr11:65687158..65687216,+!p4@DRAP1!0.90!41.20!DRAP1;;chr11:65667884..65667895,-!p2@FOSL1!0.90!27.89!FOSL1;;chr17:46621937..46621966,-!p2@HOXB2!0.90!19.45!HOXB2;;chr5:134369905..134369972,-!p1@PITX1!0.90!11.00!PITX1;;chr2:5832508..5832524,+!p1@SOX11!0.90!6.91!SOX11;;chr16:86612320..86612394,+!p1@FOXL1!0.90!6.91!FOXL1;;chr7:19157248..19157268,-!p1@TWIST1!0.88!18.94!TWIST1;;chr16:86600426..86600441,+!p1@FOXC2!0.88!17.15!FOXC2;;chr17:46667594..46667619,-!p1@HOXB3!0.88!6.65!HOXB3;;chr7:27196267..27196311,-!p1@HOXA7!0.88!6.65!HOXA7;;chr8:128748308..128748324,+!p2@MYC!0.87!188.08!MYC;;chr8:49833948..49833973,-!p2@SNAI2!0.87!42.73!SNAI2;;chr17:46667628..46667642,-!p2@HOXB3!0.87!6.40!HOXB3;;chr4:174451370..174451387,-!p1@HAND2!0.87!6.40!HAND2;;chr11:61520075..61520136,+!p1@C11orf9!0.86!13.82!C11orf9;;chr11:47279248..47279264,+!p3@NR1H3!0.86!7.17!NR1H3;;chr7:19157043..19157088,-!p2@TWIST1!0.85!16.12!TWIST1;;chr17:46622114..46622138,-!p4@HOXB2!0.85!9.47!HOXB2;;chr11:65686952..65686975,+!p5@DRAP1!0.84!35.06!DRAP1;;chr12:66218904..66218913,+!p11@HMGA2!0.84!5.89!HMGA2;;chr11:46299186..46299195,+!p3@CREB3L1!0.82!6.40!CREB3L1;;chr11:46299443..46299459,+!p4@CREB3L1!0.82!5.63!CREB3L1;;chr16:86600870..86600921,+!p2@FOXC2!0.82!5.63!FOXC2;;chr21:38071430..38071456,+!p1@SIM2!0.82!5.63!SIM2;;chr9:132427883..132427951,+!p2@PRRX2!0.82!5.63!PRRX2;;chr12:66218212..66218244,+!p5@HMGA2!0.81!8.19!HMGA2;;chr19:45260775..45260838,+!p5@BCL3!0.80!7.17!BCL3;;chr15:96876966..96877017,+!p12@NR2F2!0.79!7.68!NR2F2;;chr16:31076332..31076388,-!p3@ZNF668!0.79!5.12!ZNF668;;chr17:46621146..46621180,-!p10@HOXB2!0.79!5.12!HOXB2;;chr14:29235961..29236008,+!p1@FOXG1!0.77!4.86!FOXG1;;chr11:47279504..47279563,+!p1@NR1H3!0.76!11.52!NR1H3;;chr15:96874012..96874042,+!p2@NR2F2!0.75!45.55!NR2F2;;chr17:1959369..1959388,+!p2@HIC1!0.75!13.31!HIC1;;chr20:42543506..42543549,+!p2@TOX2!0.75!12.03!TOX2;;chr17:46688334..46688385,-!p1@HOXB7!0.75!6.91!HOXB7;;chr17:46687959..46688007,-!p2@HOXB7!0.75!6.65!HOXB7;;chr17:59477403..59477414,+!p4@TBX2!0.75!4.61!TBX2;;chr4:174450089..174450153,-!p2@HAND2!0.75!4.61!HAND2;;chr12:54447599..54447630,+!p3@HOXC4!0.74!5.63!HOXC4;;chr19:13106214..13106382,+!p1@NFIX!0.73!114.13!NFIX;;chr17:46655672..46655697,-!p3@HOXB4!0.73!4.35!HOXB4;;chr7:27183263..27183284,-!p2@HOXA5!0.73!4.35!HOXA5;;chr8:11561684..11561751,+!p1@GATA4!0.73!4.35!GATA4;;chr12:115121962..115121987,-!p1@TBX3!0.72!40.43!TBX3;;chr12:66218378..66218401,+!p6@HMGA2!0.72!6.91!HMGA2;;chr11:65686776..65686787,+!p9@DRAP1!0.72!5.12!DRAP1;;chr17:46671154..46671167,-!p4@HOXB5!0.71!4.09!HOXB5;;chr17:46655730..46655791,-!p1@HOXB4!0.70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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000056;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000187;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000192;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002598;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000065;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001558;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002185;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002385;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005181
 |ffid_belonging_in_development=CL:0000355,CL:0000222,CL:0000514
 |fonse_cell_line=
@@ Line 40: / Line 44: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Bronchial%252c%2520donor1.CNhs11328.11512-119G9.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Bronchial%252c%2520donor1.CNhs11328.11512-119G9.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Bronchial%252c%2520donor1.CNhs11328.11512-119G9.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Bronchial%252c%2520donor1.CNhs11328.11512-119G9.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Bronchial%252c%2520donor1.CNhs11328.11512-119G9.hg38.nobarcode.ctss.bed.gz
 |id=FF:11512-119G9
 |is_a=EFO:0002091;;FF:0000179;;FF:0000998
 |is_obsolete=
 |library_id=CNhs11328
+|library_id_phase_based=2:CNhs11328
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11512
+|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10004.TAGCTT.11512
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11512
+|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10004.TAGCTT.11512
 |name=Smooth Muscle Cells - Bronchial, donor1
 |namespace=
@@ Line 49: / Line 65: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11328,LSID768,release014,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=SRhi10004,,,
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@@ Line 65: / Line 82: @@
 |rna_tube_id=119G9
 |rna_weight_ug=10
+|rnaseq_library_id=SRhi10004.TAGCTT
 |sample_age=
 |sample_category=primary cells
@@ Line 88: / Line 106: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11512-119G9;search_select_hide=table117:FF:11512-119G9
 }}

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Latest revision as of 18:05, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0