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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005129
|DRA_sample_Accession=CAGE@SAMD00005129
|accession_numbers=CAGE;DRX008510;DRR009382;DRZ000807;DRZ002192
|accession_numbers=CAGE;DRX008510;DRR009382;DRZ000807;DRZ002192;DRZ012157;DRZ013542
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001638,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0010260,UBERON:0003920,UBERON:0007500,UBERON:0001981,UBERON:0002049,UBERON:0010317,UBERON:0007798,UBERON:0002066,UBERON:0004535,UBERON:0004537,UBERON:0004582,UBERON:0001009
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001638,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0010260,UBERON:0003920,UBERON:0007500,UBERON:0001981,UBERON:0002049,UBERON:0010317,UBERON:0007798,UBERON:0002066,UBERON:0004535,UBERON:0004537,UBERON:0004582,UBERON:0001009
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0000359,CL:0002588
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0000359,CL:0002588
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|def=
|def=
|expression_enrichment_score=chr4:174451370..174451387,-!p1@HAND2!2.12!129.36!HAND2;;chr12:66218255..66218304,+!p3@HMGA2!1.84!175.97!HMGA2;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.64!42.31!HOXC5;;chr12:66218598..66218645,+!p2@HMGA2!1.63!186.43!HMGA2;;chr7:19157248..19157268,-!p1@TWIST1!1.61!107.42!TWIST1;;chr12:66218212..66218244,+!p5@HMGA2!1.49!43.17!HMGA2;;chr12:66218183..66218209,+!p4@HMGA2!1.41!46.18!HMGA2;;chr12:54402745..54402788,+!p1@HOXC8!1.41!24.81!HOXC8;;chr12:54393880..54393962,+!p1@HOXC9!1.39!23.38!HOXC9;;chr4:174450089..174450153,-!p2@HAND2!1.31!19.65!HAND2;;chr12:66218836..66218888,+!p1@HMGA2!1.30!173.10!HMGA2;;chr11:46299199..46299233,+!p1@CREB3L1!1.28!90.49!CREB3L1;;chr5:134369905..134369972,-!p1@PITX1!1.25!25.38!PITX1;;chr7:35293685..35293718,-!p1@TBX20!1.25!16.78!TBX20;;chr4:111544219..111544240,-!p1@PITX2!1.25!16.64!PITX2;;chr12:54378923..54378966,+!p1@HOXC10!1.24!16.49!HOXC10;;chr12:54379029..54379057,+!p2@HOXC10!1.21!15.35!HOXC10;;chr4:111558135..111558198,-!p2@PITX2!1.21!15.06!PITX2;;chr17:46682321..46682362,-!p1@HOXB6!1.18!14.20!HOXB6;;chr15:57511609..57511651,+!p2@TCF12!1.16!22.37!TCF12;;chr1:170633348..170633399,+!p2@PRRX1!1.14!17.64!PRRX1;;chr2:176969228..176969260,+!p1@HOXD11!1.14!12.91!HOXD11;;chr5:137804484..137804498,+!p2@EGR1!1.13!50.34!EGR1;;chr12:66218573..66218596,+!p7@HMGA2!1.13!18.50!HMGA2;;chr12:66218378..66218401,+!p6@HMGA2!1.12!19.07!HMGA2;;chr16:86544113..86544145,+!p1@FOXF1!1.11!14.91!FOXF1;;chr7:27224842..27224872,-!p1@HOXA11!1.11!11.90!HOXA11;;chr6:134210243..134210257,+!p1@TCF21!1.11!11.76!TCF21;;chr4:174451350..174451363,-!p3@HAND2!1.09!11.33!HAND2;;chr11:61520075..61520136,+!p1@C11orf9!1.08!23.23!C11orf9;;chr12:66218443..66218461,+!p8@HMGA2!1.05!13.19!HMGA2;;chr18:19749386..19749404,+!p2@GATA6!1.04!14.34!GATA6;;chr5:134369879..134369898,-!p2@PITX1!1.03!9.61!PITX1;;chr19:46801639..46801699,+!p1@HIF3A!1.01!9.18!HIF3A;;chr12:54380404..54380433,+!p3@HOXC10!1.00!8.89!HOXC10;;chr7:27205136..27205164,-!p1@HOXA9!0.99!8.75!HOXA9;;chr11:46299539..46299620,+!p2@CREB3L1!0.98!14.63!CREB3L1;;chr2:19558373..19558392,-!p1@OSR1!0.97!23.23!OSR1;;chr5:92918919..92918942,+!p1@NR2F1!0.96!37.29!NR2F1;;chr2:5832508..5832524,+!p1@SOX11!0.95!7.89!SOX11;;chr7:27224795..27224840,-!p2@HOXA11!0.93!7.46!HOXA11;;chr6:34204672..34204692,+!p1@HMGA1!0.92!856.17!HMGA1;;chr6:34204921..34204939,+!p3@HMGA1!0.92!229.60!HMGA1;;chr12:54402729..54402743,+!p3@HOXC8!0.91!7.17!HOXC8;;chrY:21906594..21906622,-!p1@KDM5D!0.91!7.17!KDM5D;;chr12:54402790..54402805,+!p2@HOXC8!0.90!7.03!HOXC8;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.90!7.03!HOXC5;;chr12:66218469..66218477,+!p16@HMGA2!0.90!7.03!HMGA2;;chr18:19749541..19749557,+!p1@GATA6!0.88!21.66!GATA6;;chr12:66218152..66218174,+!p10@HMGA2!0.88!7.17!HMGA2;;chr12:66218420..66218439,+!p12@HMGA2!0.87!6.45!HMGA2;;chr12:54384370..54384382,+!p5@HOXC6!0.84!5.88!HOXC6;;chr17:59477233..59477263,+!p1@TBX2!0.83!19.07!TBX2;;chr11:65686732..65686756,+!p2@DRAP1!0.82!25.10!DRAP1;;chr1:170632285..170632309,+!p1@PRRX1!0.82!6.45!PRRX1;;chr7:27192185..27192209,-!p1@HOXA3!0.81!5.45!HOXA3;;chr5:137801160..137801176,+!p1@EGR1!0.80!578.38!EGR1;;chr12:115121962..115121987,-!p1@TBX3!0.80!48.04!TBX3;;chr8:49833948..49833973,-!p2@SNAI2!0.80!36.57!SNAI2;;chr7:27205106..27205134,-!p2@HOXA9!0.80!5.31!HOXA9;;chr7:27213893..27213954,-!p1@HOXA10!0.80!5.31!HOXA10;;chr12:54422217..54422239,+!p3@HOXC6!0.80!5.31!HOXC6;;chr17:46622070..46622109,-!p1@HOXB2!0.79!12.19!HOXB2;;chr12:66218923..66218934,+!p14@HMGA2!0.79!5.16!HMGA2;;chrY:2803415..2803468,+!p1@ZFY!0.79!5.16!ZFY;;chr12:66218003..66218018,+!p9@HMGA2!0.78!6.31!HMGA2;;chr9:77112244..77112262,+!p1@RORB!0.78!5.74!RORB;;chr17:46675558..46675577,-!p2@HOXB6!0.78!5.02!HOXB6;;chr12:66218904..66218913,+!p11@HMGA2!0.78!5.02!HMGA2;;chr1:158979872..158979898,+!p3@IFI16!0.77!16.06!IFI16;;chr8:49833978..49833996,-!p1@SNAI2!0.76!109.28!SNAI2;;chr6:45390025..45390076,+!p2@RUNX2!0.76!12.19!RUNX2;;chr6:155635583..155635644,-!p1@TFB1M!0.75!65.83!TFB1M;;chr19:45971246..45971265,+!p1@FOSB!0.74!93.93!FOSB;;chr17:46688334..46688385,-!p1@HOXB7!0.74!6.74!HOXB7;;chr2:176969179..176969226,+!p2@HOXD11!0.74!4.45!HOXD11;;chr11:65686802..65686818,+!p6@DRAP1!0.73!8.03!DRAP1;;chr12:66358080..66358094,+!p15@HMGA2!0.72!4.30!HMGA2;;chr4:111544254..111544270,-!p3@PITX2!0.71!4.16!PITX2;;chr15:96874012..96874042,+!p2@NR2F2!0.70!41.02!NR2F2;;chr7:26191809..26191890,+!p1@NFE2L3!0.70!22.23!NFE2L3;;chr17:59477197..59477212,+!p2@TBX2!0.70!7.46!TBX2;;chr19:45260775..45260838,+!p5@BCL3!0.70!5.45!BCL3;;chr5:92918956..92918969,+!p4@NR2F1!0.69!4.30!NR2F1;;chr1:151032860..151032918,+!p1@MLLT11!0.68!51.63!MLLT11;;chr20:42543441..42543497,+!p1@TOX2!0.68!19.07!TOX2;;chr3:168864315..168864339,-!p2@MECOM!0.68!6.74!MECOM;;chr15:83953397..83953425,-!p1@BNC1!0.68!4.45!BNC1;;chr15:42749722..42749739,-!p2@ZFP106!0.67!7.17!ZFP106;;chr16:86612320..86612394,+!p1@FOXL1!0.67!3.73!FOXL1;;chr2:176994408..176994492,+!p1@HOXD8!0.67!3.73!HOXD8;;chr7:19157043..19157088,-!p2@TWIST1!0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|expression_enrichment_score=chr4:174451370..174451387,-!p1@HAND2!2.12!129.36!HAND2;;chr12:66218255..66218304,+!p3@HMGA2!1.84!175.97!HMGA2;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.64!42.31!HOXC5;;chr12:66218598..66218645,+!p2@HMGA2!1.63!186.43!HMGA2;;chr7:19157248..19157268,-!p1@TWIST1!1.61!107.42!TWIST1;;chr12:66218212..66218244,+!p5@HMGA2!1.49!43.17!HMGA2;;chr12:66218183..66218209,+!p4@HMGA2!1.41!46.18!HMGA2;;chr12:54402745..54402788,+!p1@HOXC8!1.41!24.81!HOXC8;;chr12:54393880..54393962,+!p1@HOXC9!1.39!23.38!HOXC9;;chr4:174450089..174450153,-!p2@HAND2!1.31!19.65!HAND2;;chr12:66218836..66218888,+!p1@HMGA2!1.30!173.10!HMGA2;;chr11:46299199..46299233,+!p1@CREB3L1!1.28!90.49!CREB3L1;;chr5:134369905..134369972,-!p1@PITX1!1.25!25.38!PITX1;;chr7:35293685..35293718,-!p1@TBX20!1.25!16.78!TBX20;;chr4:111544219..111544240,-!p1@PITX2!1.25!16.64!PITX2;;chr12:54378923..54378966,+!p1@HOXC10!1.24!16.49!HOXC10;;chr12:54379029..54379057,+!p2@HOXC10!1.21!15.35!HOXC10;;chr4:111558135..111558198,-!p2@PITX2!1.21!15.06!PITX2;;chr17:46682321..46682362,-!p1@HOXB6!1.18!14.20!HOXB6;;chr15:57511609..57511651,+!p2@TCF12!1.16!22.37!TCF12;;chr1:170633348..170633399,+!p2@PRRX1!1.14!17.64!PRRX1;;chr2:176969228..176969260,+!p1@HOXD11!1.14!12.91!HOXD11;;chr5:137804484..137804498,+!p2@EGR1!1.13!50.34!EGR1;;chr12:66218573..66218596,+!p7@HMGA2!1.13!18.50!HMGA2;;chr12:66218378..66218401,+!p6@HMGA2!1.12!19.07!HMGA2;;chr16:86544113..86544145,+!p1@FOXF1!1.11!14.91!FOXF1;;chr7:27224842..27224872,-!p1@HOXA11!1.11!11.90!HOXA11;;chr6:134210243..134210257,+!p1@TCF21!1.11!11.76!TCF21;;chr4:174451350..174451363,-!p3@HAND2!1.09!11.33!HAND2;;chr11:61520075..61520136,+!p1@C11orf9!1.08!23.23!C11orf9;;chr12:66218443..66218461,+!p8@HMGA2!1.05!13.19!HMGA2;;chr18:19749386..19749404,+!p2@GATA6!1.04!14.34!GATA6;;chr5:134369879..134369898,-!p2@PITX1!1.03!9.61!PITX1;;chr19:46801639..46801699,+!p1@HIF3A!1.01!9.18!HIF3A;;chr12:54380404..54380433,+!p3@HOXC10!1.00!8.89!HOXC10;;chr7:27205136..27205164,-!p1@HOXA9!0.99!8.75!HOXA9;;chr11:46299539..46299620,+!p2@CREB3L1!0.98!14.63!CREB3L1;;chr2:19558373..19558392,-!p1@OSR1!0.97!23.23!OSR1;;chr5:92918919..92918942,+!p1@NR2F1!0.96!37.29!NR2F1;;chr2:5832508..5832524,+!p1@SOX11!0.95!7.89!SOX11;;chr7:27224795..27224840,-!p2@HOXA11!0.93!7.46!HOXA11;;chr6:34204672..34204692,+!p1@HMGA1!0.92!856.17!HMGA1;;chr6:34204921..34204939,+!p3@HMGA1!0.92!229.60!HMGA1;;chr12:54402729..54402743,+!p3@HOXC8!0.91!7.17!HOXC8;;chrY:21906594..21906622,-!p1@KDM5D!0.91!7.17!KDM5D;;chr12:54402790..54402805,+!p2@HOXC8!0.90!7.03!HOXC8;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.90!7.03!HOXC5;;chr12:66218469..66218477,+!p16@HMGA2!0.90!7.03!HMGA2;;chr18:19749541..19749557,+!p1@GATA6!0.88!21.66!GATA6;;chr12:66218152..66218174,+!p10@HMGA2!0.88!7.17!HMGA2;;chr12:66218420..66218439,+!p12@HMGA2!0.87!6.45!HMGA2;;chr12:54384370..54384382,+!p5@HOXC6!0.84!5.88!HOXC6;;chr17:59477233..59477263,+!p1@TBX2!0.83!19.07!TBX2;;chr11:65686732..65686756,+!p2@DRAP1!0.82!25.10!DRAP1;;chr1:170632285..170632309,+!p1@PRRX1!0.82!6.45!PRRX1;;chr7:27192185..27192209,-!p1@HOXA3!0.81!5.45!HOXA3;;chr5:137801160..137801176,+!p1@EGR1!0.80!578.38!EGR1;;chr12:115121962..115121987,-!p1@TBX3!0.80!48.04!TBX3;;chr8:49833948..49833973,-!p2@SNAI2!0.80!36.57!SNAI2;;chr7:27205106..27205134,-!p2@HOXA9!0.80!5.31!HOXA9;;chr7:27213893..27213954,-!p1@HOXA10!0.80!5.31!HOXA10;;chr12:54422217..54422239,+!p3@HOXC6!0.80!5.31!HOXC6;;chr17:46622070..46622109,-!p1@HOXB2!0.79!12.19!HOXB2;;chr12:66218923..66218934,+!p14@HMGA2!0.79!5.16!HMGA2;;chrY:2803415..2803468,+!p1@ZFY!0.79!5.16!ZFY;;chr12:66218003..66218018,+!p9@HMGA2!0.78!6.31!HMGA2;;chr9:77112244..77112262,+!p1@RORB!0.78!5.74!RORB;;chr17:46675558..46675577,-!p2@HOXB6!0.78!5.02!HOXB6;;chr12:66218904..66218913,+!p11@HMGA2!0.78!5.02!HMGA2;;chr1:158979872..158979898,+!p3@IFI16!0.77!16.06!IFI16;;chr8:49833978..49833996,-!p1@SNAI2!0.76!109.28!SNAI2;;chr6:45390025..45390076,+!p2@RUNX2!0.76!12.19!RUNX2;;chr6:155635583..155635644,-!p1@TFB1M!0.75!65.83!TFB1M;;chr19:45971246..45971265,+!p1@FOSB!0.74!93.93!FOSB;;chr17:46688334..46688385,-!p1@HOXB7!0.74!6.74!HOXB7;;chr2:176969179..176969226,+!p2@HOXD11!0.74!4.45!HOXD11;;chr11:65686802..65686818,+!p6@DRAP1!0.73!8.03!DRAP1;;chr12:66358080..66358094,+!p15@HMGA2!0.72!4.30!HMGA2;;chr4:111544254..111544270,-!p3@PITX2!0.71!4.16!PITX2;;chr15:96874012..96874042,+!p2@NR2F2!0.70!41.02!NR2F2;;chr7:26191809..26191890,+!p1@NFE2L3!0.70!22.23!NFE2L3;;chr17:59477197..59477212,+!p2@TBX2!0.70!7.46!TBX2;;chr19:45260775..45260838,+!p5@BCL3!0.70!5.45!BCL3;;chr5:92918956..92918969,+!p4@NR2F1!0.69!4.30!NR2F1;;chr1:151032860..151032918,+!p1@MLLT11!0.68!51.63!MLLT11;;chr20:42543441..42543497,+!p1@TOX2!0.68!19.07!TOX2;;chr3:168864315..168864339,-!p2@MECOM!0.68!6.74!MECOM;;chr15:83953397..83953425,-!p1@BNC1!0.68!4.45!BNC1;;chr15:42749722..42749739,-!p2@ZFP106!0.67!7.17!ZFP106;;chr16:86612320..86612394,+!p1@FOXL1!0.67!3.73!FOXL1;;chr2:176994408..176994492,+!p1@HOXD8!0.67!3.73!HOXD8;;chr7:19157043..19157088,-!p2@TWIST1!0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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000056;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000187;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000192;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000359;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002588;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001638;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001981;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002385;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007798;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0010260
|ffid_belonging_in_development=CL:0000355,CL:0000222,CL:0000514
|ffid_belonging_in_development=CL:0000355,CL:0000222,CL:0000514
|fonse_cell_line=
|fonse_cell_line=
Line 41: Line 42:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Umbilical%2520Vein%252c%2520donor1.CNhs12597.11541-120B2.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Umbilical%2520Vein%252c%2520donor1.CNhs12597.11541-120B2.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Umbilical%2520Vein%252c%2520donor1.CNhs12597.11541-120B2.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Umbilical%2520Vein%252c%2520donor1.CNhs12597.11541-120B2.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Umbilical%2520Vein%252c%2520donor1.CNhs12597.11541-120B2.hg38.nobarcode.ctss.bed.gz
|id=FF:11541-120B2
|id=FF:11541-120B2
|is_a=EFO:0002091;;FF:0000177
|is_a=EFO:0002091;;FF:0000177
Line 46: Line 52:
|library_id=CNhs12597
|library_id=CNhs12597
|library_id_phase_based=2:CNhs12597
|library_id_phase_based=2:CNhs12597
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11541
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11541
|name=Smooth Muscle Cells - Umbilical Vein, donor1
|name=Smooth Muscle Cells - Umbilical Vein, donor1
|namespace=FANTOM5
|namespace=FANTOM5
Line 53: Line 63:
|profile_rnaseq=
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 90: Line 101:
|top_motifs=HSF1,2:1.30860254873;EN1,2:1.2067720461;TAL1_TCF{3,4,12}:1.11826289956;NFY{A,B,C}:1.01059123511;NR3C1:0.985497296507;PBX1:0.96904795767;PAX8:0.900292627726;CDC5L:0.88600477005;HOX{A5,B5}:0.879854834419;TFDP1:0.87938027578;SRF:0.850969631454;GFI1:0.840203646827;E2F1..5:0.796821700217;MYB:0.776080184057;TEAD1:0.738864886524;GFI1B:0.734737722466;LHX3,4:0.719543962124;ATF6:0.718099930499;NKX3-1:0.612025133898;ZNF384:0.597107642408;FOXD3:0.590251446429;SOX17:0.5832303129;FOX{I1,J2}:0.563663612517;TBP:0.511663723437;DBP:0.49610621798;KLF4:0.486700206681;PPARG:0.480104779719;ELK1,4_GABP{A,B1}:0.474752412598;HOXA9_MEIS1:0.469724957735;POU1F1:0.466902783462;EVI1:0.463473067785;ADNP_IRX_SIX_ZHX:0.461128402434;LEF1_TCF7_TCF7L1,2:0.455489796524;IKZF1:0.436407938784;MAFB:0.421572405573;NR1H4:0.413385270177;NANOG:0.388147827616;NRF1:0.378016422853;NKX6-1,2:0.36678375231;MYBL2:0.352544595391;NFATC1..3:0.351814927245;GATA4:0.350646399144;TP53:0.34180034562;RXR{A,B,G}:0.339334589509;POU5F1:0.338874354995;ZNF143:0.32116858511;YY1:0.321021845435;XBP1:0.316266579227;GLI1..3:0.31470043903;POU3F1..4:0.312246267271;MZF1:0.307136614692;GZF1:0.30427585846;NR6A1:0.301438018811;PAX4:0.297964668168;GTF2A1,2:0.288125285246;NKX2-2,8:0.285676996419;AHR_ARNT_ARNT2:0.28279662821;TLX1..3_NFIC{dimer}:0.27540874655;TEF:0.266014047606;UFEwm:0.262105367517;TBX4,5:0.262013184317;STAT1,3:0.260471910208;HMGA1,2:0.252733228024;T:0.249192423581;ONECUT1,2:0.23188441188;PRDM1:0.200507789892;PAX5:0.197398814877;SOX2:0.196483129102;EBF1:0.192189691716;CDX1,2,4:0.187280588703;ELF1,2,4:0.166115559593;TFAP4:0.161405153339;POU2F1..3:0.15180174699;ZIC1..3:0.151281917129;HNF4A_NR2F1,2:0.142502130807;FOSL2:0.142311967862;BPTF:0.132773899902;ZNF148:0.131492949648;PAX1,9:0.127670947901;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.106993836319;NFE2L2:0.103384986661;SPZ1:0.0974263310731;SOX{8,9,10}:0.097094569534;BACH2:0.0933027158646;PRRX1,2:0.0914480759754;HAND1,2:0.088326735238;GTF2I:0.082693059396;NKX2-3_NKX2-5:0.0795353035946;ZNF238:0.0781198462396;FOS_FOS{B,L1}_JUN{B,D}:0.0714015703853;ALX4:0.0661594501643;FOXQ1:0.0573928251649;HNF1A:0.0554216973763;NKX2-1,4:0.0459760877691;PITX1..3:0.0431420330444;PDX1:0.0357842953109;SOX5:0.0285546346928;NKX3-2:0.0264284717165;CRX:0.0253374082189;HOX{A4,D4}:0.0223955727776;RFX1:0.0207264720667;RUNX1..3:0.00308098482189;TLX2:-0.0108943539325;HLF:-0.0191908425291;PATZ1:-0.0270512099311;JUN:-0.0281226109184;DMAP1_NCOR{1,2}_SMARC:-0.0469789816973;NFE2:-0.0498526445673;MEF2{A,B,C,D}:-0.0593192134239;TOPORS:-0.0641979123516;MAZ:-0.0644150458454;ALX1:-0.0727821147747;SMAD1..7,9:-0.0801620651311;NFIX:-0.0879587269977;RREB1:-0.0905588473578;CREB1:-0.101066042393;ESR1:-0.110579994432;FOXP3:-0.1292977758;AIRE:-0.131134798716;CEBPA,B_DDIT3:-0.134198042767;GCM1,2:-0.13476089949;NFE2L1:-0.143634906157;OCT4_SOX2{dimer}:-0.152009912929;ZNF423:-0.166099860341;TFCP2:-0.166335815649;NHLH1,2:-0.174434127139;ZBTB6:-0.177075509185;ATF5_CREB3:-0.183563106056;POU6F1:-0.189406061437;HBP1_HMGB_SSRP1_UBTF:-0.191696282704;ARID5B:-0.196996411324;HIF1A:-0.201342279474;CUX2:-0.204409511908;ESRRA:-0.206570194348;FOXA2:-0.214293824224;NFKB1_REL_RELA:-0.228436371635;MTE{core}:-0.228534892006;SP1:-0.246716955291;FOXN1:-0.252853874077;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.26042463268;FOXL1:-0.264133441254;ZFP161:-0.264846089598;ZBTB16:-0.284429047481;NANOG{mouse}:-0.291133183952;PAX2:-0.292071918633;IRF7:-0.293821283867;GATA6:-0.299939468012;NR5A1,2:-0.311973210385;AR:-0.316543069416;STAT2,4,6:-0.322399594891;HOX{A6,A7,B6,B7}:-0.324239667022;XCPE1{core}:-0.353688038929;SREBF1,2:-0.355780076868;RFX2..5_RFXANK_RFXAP:-0.359452395436;ATF4:-0.368290891568;PAX6:-0.368611767934;TFAP2{A,C}:-0.370133764338;NFIL3:-0.375351035668;SPI1:-0.383833338824;RXRA_VDR{dimer}:-0.384967632873;REST:-0.385374241075;MED-1{core}:-0.401012980509;HES1:-0.402231741428;PAX3,7:-0.402843811292;ETS1,2:-0.403465343288;FOXM1:-0.412275794998;MTF1:-0.41757186691;SPIB:-0.444904445497;TGIF1:-0.449582177406;ATF2:-0.454597500431;HIC1:-0.463202137067;IRF1,2:-0.469462831926;bHLH_family:-0.477424733954;FOXP1:-0.478394368057;MYFfamily:-0.494997129168;STAT5{A,B}:-0.56307375821;HMX1:-0.571285817223;FOXO1,3,4:-0.575001244773;SNAI1..3:-0.577011300177;BREu{core}:-0.590481568938;FOX{D1,D2}:-0.627193633399;FOX{F1,F2,J1}:-0.639251619154;RORA:-0.642873294547;TFAP2B:-0.670025298081;EGR1..3:-0.680436405254;IKZF2:-0.743722834938;LMO2:-0.770497231757;ZEB1:-0.771758407129;VSX1,2:-0.809384445502;EP300:-0.829234792496;RBPJ:-0.990244646403;MYOD1:-1.44005021045
|top_motifs=HSF1,2:1.30860254873;EN1,2:1.2067720461;TAL1_TCF{3,4,12}:1.11826289956;NFY{A,B,C}:1.01059123511;NR3C1:0.985497296507;PBX1:0.96904795767;PAX8:0.900292627726;CDC5L:0.88600477005;HOX{A5,B5}:0.879854834419;TFDP1:0.87938027578;SRF:0.850969631454;GFI1:0.840203646827;E2F1..5:0.796821700217;MYB:0.776080184057;TEAD1:0.738864886524;GFI1B:0.734737722466;LHX3,4:0.719543962124;ATF6:0.718099930499;NKX3-1:0.612025133898;ZNF384:0.597107642408;FOXD3:0.590251446429;SOX17:0.5832303129;FOX{I1,J2}:0.563663612517;TBP:0.511663723437;DBP:0.49610621798;KLF4:0.486700206681;PPARG:0.480104779719;ELK1,4_GABP{A,B1}:0.474752412598;HOXA9_MEIS1:0.469724957735;POU1F1:0.466902783462;EVI1:0.463473067785;ADNP_IRX_SIX_ZHX:0.461128402434;LEF1_TCF7_TCF7L1,2:0.455489796524;IKZF1:0.436407938784;MAFB:0.421572405573;NR1H4:0.413385270177;NANOG:0.388147827616;NRF1:0.378016422853;NKX6-1,2:0.36678375231;MYBL2:0.352544595391;NFATC1..3:0.351814927245;GATA4:0.350646399144;TP53:0.34180034562;RXR{A,B,G}:0.339334589509;POU5F1:0.338874354995;ZNF143:0.32116858511;YY1:0.321021845435;XBP1:0.316266579227;GLI1..3:0.31470043903;POU3F1..4:0.312246267271;MZF1:0.307136614692;GZF1:0.30427585846;NR6A1:0.301438018811;PAX4:0.297964668168;GTF2A1,2:0.288125285246;NKX2-2,8:0.285676996419;AHR_ARNT_ARNT2:0.28279662821;TLX1..3_NFIC{dimer}:0.27540874655;TEF:0.266014047606;UFEwm:0.262105367517;TBX4,5:0.262013184317;STAT1,3:0.260471910208;HMGA1,2:0.252733228024;T:0.249192423581;ONECUT1,2:0.23188441188;PRDM1:0.200507789892;PAX5:0.197398814877;SOX2:0.196483129102;EBF1:0.192189691716;CDX1,2,4:0.187280588703;ELF1,2,4:0.166115559593;TFAP4:0.161405153339;POU2F1..3:0.15180174699;ZIC1..3:0.151281917129;HNF4A_NR2F1,2:0.142502130807;FOSL2:0.142311967862;BPTF:0.132773899902;ZNF148:0.131492949648;PAX1,9:0.127670947901;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.106993836319;NFE2L2:0.103384986661;SPZ1:0.0974263310731;SOX{8,9,10}:0.097094569534;BACH2:0.0933027158646;PRRX1,2:0.0914480759754;HAND1,2:0.088326735238;GTF2I:0.082693059396;NKX2-3_NKX2-5:0.0795353035946;ZNF238:0.0781198462396;FOS_FOS{B,L1}_JUN{B,D}:0.0714015703853;ALX4:0.0661594501643;FOXQ1:0.0573928251649;HNF1A:0.0554216973763;NKX2-1,4:0.0459760877691;PITX1..3:0.0431420330444;PDX1:0.0357842953109;SOX5:0.0285546346928;NKX3-2:0.0264284717165;CRX:0.0253374082189;HOX{A4,D4}:0.0223955727776;RFX1:0.0207264720667;RUNX1..3:0.00308098482189;TLX2:-0.0108943539325;HLF:-0.0191908425291;PATZ1:-0.0270512099311;JUN:-0.0281226109184;DMAP1_NCOR{1,2}_SMARC:-0.0469789816973;NFE2:-0.0498526445673;MEF2{A,B,C,D}:-0.0593192134239;TOPORS:-0.0641979123516;MAZ:-0.0644150458454;ALX1:-0.0727821147747;SMAD1..7,9:-0.0801620651311;NFIX:-0.0879587269977;RREB1:-0.0905588473578;CREB1:-0.101066042393;ESR1:-0.110579994432;FOXP3:-0.1292977758;AIRE:-0.131134798716;CEBPA,B_DDIT3:-0.134198042767;GCM1,2:-0.13476089949;NFE2L1:-0.143634906157;OCT4_SOX2{dimer}:-0.152009912929;ZNF423:-0.166099860341;TFCP2:-0.166335815649;NHLH1,2:-0.174434127139;ZBTB6:-0.177075509185;ATF5_CREB3:-0.183563106056;POU6F1:-0.189406061437;HBP1_HMGB_SSRP1_UBTF:-0.191696282704;ARID5B:-0.196996411324;HIF1A:-0.201342279474;CUX2:-0.204409511908;ESRRA:-0.206570194348;FOXA2:-0.214293824224;NFKB1_REL_RELA:-0.228436371635;MTE{core}:-0.228534892006;SP1:-0.246716955291;FOXN1:-0.252853874077;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.26042463268;FOXL1:-0.264133441254;ZFP161:-0.264846089598;ZBTB16:-0.284429047481;NANOG{mouse}:-0.291133183952;PAX2:-0.292071918633;IRF7:-0.293821283867;GATA6:-0.299939468012;NR5A1,2:-0.311973210385;AR:-0.316543069416;STAT2,4,6:-0.322399594891;HOX{A6,A7,B6,B7}:-0.324239667022;XCPE1{core}:-0.353688038929;SREBF1,2:-0.355780076868;RFX2..5_RFXANK_RFXAP:-0.359452395436;ATF4:-0.368290891568;PAX6:-0.368611767934;TFAP2{A,C}:-0.370133764338;NFIL3:-0.375351035668;SPI1:-0.383833338824;RXRA_VDR{dimer}:-0.384967632873;REST:-0.385374241075;MED-1{core}:-0.401012980509;HES1:-0.402231741428;PAX3,7:-0.402843811292;ETS1,2:-0.403465343288;FOXM1:-0.412275794998;MTF1:-0.41757186691;SPIB:-0.444904445497;TGIF1:-0.449582177406;ATF2:-0.454597500431;HIC1:-0.463202137067;IRF1,2:-0.469462831926;bHLH_family:-0.477424733954;FOXP1:-0.478394368057;MYFfamily:-0.494997129168;STAT5{A,B}:-0.56307375821;HMX1:-0.571285817223;FOXO1,3,4:-0.575001244773;SNAI1..3:-0.577011300177;BREu{core}:-0.590481568938;FOX{D1,D2}:-0.627193633399;FOX{F1,F2,J1}:-0.639251619154;RORA:-0.642873294547;TFAP2B:-0.670025298081;EGR1..3:-0.680436405254;IKZF2:-0.743722834938;LMO2:-0.770497231757;ZEB1:-0.771758407129;VSX1,2:-0.809384445502;EP300:-0.829234792496;RBPJ:-0.990244646403;MYOD1:-1.44005021045
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11541-120B2;search_select_hide=table117:FF:11541-120B2
}}
}}

Latest revision as of 18:07, 4 June 2020

Name:Smooth Muscle Cells - Umbilical Vein, donor1
Species:Human (Homo sapiens)
Library ID:CNhs12597
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueumbilical vein
dev stageNA
sexNA
ageNA
cell typesmooth muscle cell
cell lineNA
companySciencell/3H
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberSC8025
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005129
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12597 CAGE DRX008510 DRR009382
Accession ID Hg19

Library idBAMCTSS
CNhs12597 DRZ000807 DRZ002192
Accession ID Hg38

Library idBAMCTSS
CNhs12597 DRZ012157 DRZ013542
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
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C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12597

Jaspar motifP-value
MA0002.20.124
MA0003.10.538
MA0004.10.0604
MA0006.10.193
MA0007.10.608
MA0009.10.712
MA0014.10.91
MA0017.10.793
MA0018.20.441
MA0019.10.368
MA0024.14.71755e-5
MA0025.10.0271
MA0027.10.857
MA0028.11.73912e-5
MA0029.10.725
MA0030.10.0164
MA0031.10.0693
MA0035.20.598
MA0038.19.0413e-5
MA0039.20.667
MA0040.10.538
MA0041.10.795
MA0042.10.617
MA0043.10.276
MA0046.10.543
MA0047.20.192
MA0048.18.09788e-4
MA0050.11.80477e-7
MA0051.11.50741e-4
MA0052.10.645
MA0055.15.24848e-4
MA0057.10.721
MA0058.10.121
MA0059.10.526
MA0060.12.46707e-10
MA0061.10.339
MA0062.20.146
MA0065.20.603
MA0066.10.766
MA0067.10.0652
MA0068.10.719
MA0069.10.433
MA0070.10.149
MA0071.10.99
MA0072.10.415
MA0073.10.399
MA0074.10.589
MA0076.10.00898
MA0077.10.368
MA0078.10.92
MA0079.20.0654
MA0080.23.86558e-9
MA0081.10.0363
MA0083.10.00103
MA0084.10.087
MA0087.10.863
MA0088.10.00833
MA0090.19.21102e-4
MA0091.10.906
MA0092.10.466
MA0093.10.132
MA0099.20.233
MA0100.10.0113
MA0101.10.554
MA0102.20.331
MA0103.11.48048e-5
MA0104.20.816
MA0105.10.0563
MA0106.10.03
MA0107.10.102
MA0108.20.00889
MA0111.10.858
MA0112.20.346
MA0113.10.985
MA0114.10.732
MA0115.10.464
MA0116.10.458
MA0117.10.346
MA0119.10.366
MA0122.10.446
MA0124.10.0758
MA0125.10.494
MA0131.10.53
MA0135.10.0929
MA0136.10.00282
MA0137.20.854
MA0138.20.502
MA0139.10.81
MA0140.10.679
MA0141.10.203
MA0142.10.45
MA0143.10.516
MA0144.10.928
MA0145.10.349
MA0146.10.826
MA0147.10.929
MA0148.10.624
MA0149.10.828
MA0150.10.0575
MA0152.10.0322
MA0153.10.647
MA0154.10.576
MA0155.10.512
MA0156.10.155
MA0157.10.15
MA0159.10.042
MA0160.10.167
MA0162.10.021
MA0163.10.0029
MA0164.10.684
MA0258.10.0993
MA0259.10.961



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12597

Novel motifP-value
10.984
100.52
1000.597
1010.665
1020.0834
1030.997
1040.618
1050.748
1060.0045
1070.757
1080.41
1090.784
110.938
1100.223
1110.485
1120.0388
1130.189
1140.316
1150.342
1160.373
1170.49
1180.665
1190.152
120.468
1200.194
1210.641
1220.0443
1230.00107
1240.929
1250.756
1260.808
1270.936
1280.423
1290.228
130.126
1300.026
1310.511
1320.839
1330.646
1340.746
1350.404
1360.704
1370.0833
1380.0596
1391.57057e-4
140.315
1400.883
1410.2
1420.677
1430.773
1440.834
1450.709
1460.95
1470.34
1480.961
1490.761
150.353
1500.824
1510.529
1520.513
1530.538
1540.904
1550.0386
1560.333
1570.125
1580.218
1590.369
160.536
1600.886
1610.483
1620.626
1630.448
1640.562
1650.81
1660.0548
1670.915
1680.529
1690.693
170.982
180.487
190.418
20.478
200.943
210.295
220.974
230.0651
240.564
250.252
260.342
270.56
280.779
290.628
30.616
300.543
310.641
320.064
330.141
340.611
350.75
360.478
370.284
380.327
390.977
40.629
400.487
410.0426
420.905
430.303
440.816
450.346
460.839
470.956
480.9
490.285
50.396
500.553
510.747
520.165
530.169
540.507
550.914
560.987
570.98
580.106
590.422
60.863
600.011
610.377
620.0308
630.929
640.592
650.183
660.0232
670.701
680.823
690.723
70.399
702.72358e-5
710.723
720.787
730.839
740.556
750.598
760.174
770.763
780.981
790.59
80.926
800.536
810.265
820.0447
830.289
840.267
850.0286
860.407
870.519
880.779
890.192
90.971
900.8
910.234
920.195
930.9
940.618
950.314
960.359
970.845
980.0106
990.0204



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12597


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000192 (smooth muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0000359 (vascular associated smooth muscle cell)
0002588 (smooth muscle cell of the umbilical vein)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001638 (vein)
0000483 (epithelium)
0000479 (tissue)
0000055 (vessel)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0010260 (umbilical blood vessel)
0003920 (venous blood vessel)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0002049 (vasculature)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0002066 (umbilical vein)
0004535 (cardiovascular system)
0004537 (blood vasculature)
0004582 (venous system)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000167 (smooth muscle cell sample)
0000177 (human smooth muscle cell of umbilical vein sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000514 (smooth muscle myoblast)

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