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{{f5samples
{{f5samples
|id=FF:10820-111C1
|DRA_sample_Accession=CAGE@SAMD00005359
|name=hepatocellular carcinoma cell line: HepG2 ENCODE, biol_rep3
|accession_numbers=CAGE;DRX007907;DRR008779;DRZ000204;DRZ001589;DRZ011554;DRZ012939
|sample_id=10820
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002107,UBERON:0002100,UBERON:0001007,UBERON:0004119,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009569,UBERON:0002368,UBERON:0005177,UBERON:0002365,UBERON:0005172,UBERON:0006925,UBERON:0002530,UBERON:0010317,UBERON:0005173,UBERON:0002417,UBERON:0000949,UBERON:0002330,UBERON:0000916,UBERON:0002423
|rna_tube_id=111C1
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000181,CL:0000417,CL:0000668,CL:0000412,CL:0000255,CL:0000182
|rna_box=111
|ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:7,DOID:305
|rna_position=C1
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0101120,FF:0100224,FF:0100578,FF:0100599
|sample_cell_lot=
|comment=
|sample_cell_catalog=
|created_by=
|sample_company=
|creation_date=
|rna_lot_number=
|data_phase=2
|rna_catalog_number=
|datafreeze_phase=2
|sample_species=
|def=
|sample_strain=
|expression_enrichment_score=chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!2.55!354.14!PEG3;;chr6:1312325..1312340,+!p1@FOXQ1!2.35!352.52!FOXQ1;;chr1:27240455..27240474,-!p1@NR0B2!2.15!141.48!NR0B2;;chr2:171571827..171571853,+!p1@SP5!2.04!108.18!SP5;;chrX:131624056..131624069,-!p2@MBNL3!1.98!127.80!MBNL3;;chr17:53342311..53342400,+!p1@HLF!1.94!99.15!HLF;;chr17:26697304..26697335,-!p1@SEBOX,p1@VTN!1.93!84.05!SEBOX;;chr7:73038839..73038862,-!p1@MLXIPL!1.92!82.43!MLXIPL;;chr17:53344945..53344977,+!p2@HLF!1.90!77.92!HLF;;chr17:41622765..41622821,-!p2@ETV4!1.88!112.16!ETV4;;chr1:214161272..214161322,+!p1@PROX1!1.87!100.77!PROX1;;chr20:43029862..43029900,+!p1@HNF4A!1.87!73.07!HNF4A;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!1.81!64.30!SEBOX;;chr12:100867627..100867652,+!p1@NR1H4!1.78!59.72!NR1H4;;chr17:41622731..41622764,-!p5@ETV4!1.74!53.79!ETV4;;chr14:38064429..38064486,-!p1@FOXA1!1.70!49.47!FOXA1;;chr20:22564895..22564910,-!p1@FOXA2!1.66!44.62!FOXA2;;chr17:53344980..53345011,+!p3@HLF!1.65!43.95!HLF;;chrX:131547625..131547644,-!p4@MBNL3!1.57!36.40!MBNL3;;chr12:66218183..66218209,+!p4@HMGA2!1.54!63.97!HMGA2;;chr17:70117153..70117174,+!p1@SOX9!1.53!320.03!SOX9;;chr20:42984330..42984364,+!p2@HNF4A!1.52!32.15!HNF4A;;chr2:171571796..171571808,+!p4@SP5!1.52!32.08!SP5;;chr1:226411361..226411366,+!p1@MIXL1!1.48!29.19!MIXL1;;chr2:171572786..171572840,+!p2@SP5!1.45!27.43!SP5;;chr8:11561684..11561751,+!p1@GATA4!1.44!26.42!GATA4;;chr19:2867325..2867348,+!p1@ZNF556!1.43!25.75!ZNF556;;chr19:33793430..33793447,-!p1@CEBPA!1.40!98.88!CEBPA;;chr10:94449703..94449718,+!p1@HHEX!1.39!89.24!HHEX;;chr12:66218212..66218244,+!p5@HMGA2!1.38!32.83!HMGA2;;chr17:41623692..41623715,-!p1@ETV4!1.37!93.69!ETV4;;chr12:66218255..66218304,+!p3@HMGA2!1.37!59.72!HMGA2;;chr2:177053386..177053402,+!p1@HOXD1!1.36!21.97!HOXD1;;chr12:66218003..66218018,+!p9@HMGA2!1.35!26.15!HMGA2;;chr15:53082521..53082549,-!p1@ONECUT1!1.34!20.69!ONECUT1;;chr12:100867653..100867677,+!p2@NR1H4!1.33!20.15!NR1H4;;chr11:61520075..61520136,+!p1@C11orf9!1.32!41.52!C11orf9;;chr20:62680984..62680999,-!p1@SOX18!1.29!24.47!SOX18;;chr2:25475120..25475176,-!p2@DNMT3A!1.28!24.20!DNMT3A;;chr2:171571931..171571959,+!p3@SP5!1.28!18.06!SP5;;chr12:24102576..24102623,-!p2@SOX5!1.28!17.93!SOX5;;chr8:76319876..76319926,+!p1@HNF4G!1.27!17.59!HNF4G;;chr5:134369905..134369972,-!p1@PITX1!1.26!26.29!PITX1;;chr17:41622925..41622976,-!p3@ETV4!1.26!25.34!ETV4;;chr19:46367576..46367592,+!p1@FOXA3!1.26!17.32!FOXA3;;chrX:131547596..131547609,-!p10@MBNL3!1.25!16.58!MBNL3;;chr16:52581025..52581072,-!p1@TOX3!1.23!16.18!TOX3;;chr10:51572408..51572454,+!p3@NCOA4!1.22!89.17!NCOA4;;chr9:127269661..127269719,-!p1@NR5A1!1.22!15.77!NR5A1;;chr2:63277948..63277974,+!p1@OTX1!1.20!14.69!OTX1;;chrY:21906594..21906622,-!p1@KDM5D!1.19!14.49!KDM5D;;chr12:66218598..66218645,+!p2@HMGA2!1.18!65.04!HMGA2;;chr17:26697257..26697268,-!p3@SEBOX,p3@VTN!1.18!14.22!SEBOX;;chr12:66218152..66218174,+!p10@HMGA2!1.17!14.76!HMGA2;;chr1:214161328..214161348,+!p2@PROX1!1.17!13.75!PROX1;;chr20:50159198..50159299,-!p1@NFATC2!1.12!17.66!NFATC2;;chr12:66218836..66218888,+!p1@HMGA2!1.11!111.42!HMGA2;;chr20:43030002..43030028,+!p3@HNF4A!1.08!11.05!HNF4A;;chr2:113977697..113977733,-!p6@PAX8!1.08!10.92!PAX8;;chr17:41623667..41623682,-!p8@ETV4!1.07!11.66!ETV4;;chr2:25475094..25475112,-!p3@DNMT3A!1.04!10.04!DNMT3A;;chr3:141150883..141150961,+!p6@ZBTB38!1.03!9.64!ZBTB38;;chr12:66357214..66357233,+!p13@HMGA2!1.03!9.64!HMGA2;;chr16:68118689..68118733,+!p3@NFATC3!1.02!24.27!NFATC3;;chr19:926001..926046,+!p1@ARID3A!1.01!32.83!ARID3A;;chr12:66218378..66218401,+!p6@HMGA2!1.00!14.09!HMGA2;;chrX:128657457..128657475,-!p1@SMARCA1!0.98!100.23!SMARCA1;;chr14:38064590..38064606,-!p2@FOXA1!0.98!8.63!FOXA1;;chr12:121416340..121416360,+!p1@HNF1A!0.98!8.49!HNF1A;;chr6:7108179..7108199,+!p4@RREB1!0.97!17.19!RREB1;;chr5:134369879..134369898,-!p2@PITX1!0.97!8.43!PITX1;;chr20:22566120..22566136,-!p4@FOXA2!0.97!8.43!FOXA2;;chr16:54320101..54320125,-!p4@IRX3!0.96!11.66!IRX3;;chr8:37963466..37963506,+!p3@ASH2L!0.96!10.31!ASH2L;;chr17:41622834..41622883,-!p6@ETV4!0.96!9.98!ETV4;;chr19:48773337..48773339,+!p2@ZNF114!0.96!8.02!ZNF114;;chr12:24103844..24103880,-!p3@SOX5!0.95!7.89!SOX5;;chr20:42295713..42295738,+!p2@MYBL2!0.92!44.82!MYBL2;;chr2:46524897..46524911,+!p2@EPAS1!0.92!21.37!EPAS1;;chr10:94449675..94449694,+!p2@HHEX!0.92!20.49!HHEX;;chr19:926055..926068,+!p2@ARID3A!0.91!15.91!ARID3A;;chr18:55102598..55102623,+!p1@ONECUT2!0.91!7.14!ONECUT2;;chr12:100867736..100867750,+!p4@NR1H4!0.90!7.01!NR1H4;;chr1:201979743..201979762,+!p1@ELF3!0.90!6.88!ELF3;;chr20:22565370..22565388,-!p2@FOXA2!0.90!6.88!FOXA2;;chr12:7079780..7079791,-!p2@PHB2!0.89!36.87!PHB2;;chr1:214161358..214161377,+!p3@PROX1!0.89!6.74!PROX1;;chr10:97889464..97889494,+!p3@ZNF518A!0.88!12.74!ZNF518A;;chrX:131623982..131624011,-!p6@MBNL3!0.88!9.71!MBNL3;;chr20:35202909..35202963,+!p2@TGIF2,p3@C20orf24!0.88!9.57!TGIF2;;chr2:171572699..171572713,+!p7@SP5!0.88!6.67!SP5;;chr18:6414884..6414942,-!p1@L3MBTL4!0.87!8.22!L3MBTL4;;chr2:180427261..180427297,-!p6@ZNF385B!0.87!6.47!ZNF385B;;chr2:180427304..180427323,-!p7@ZNF385B!0.87!6.40!ZNF385B;;chr20:306177..306211,+!p2@SOX12!0.86!44.82!SOX12;;chr2:239148671..239148686,-!p1@HES6!0.86!23.93!HES6;;chr4:4291837..4291859,-!p2@LYAR!0.86!21.30!LYAR;;chr12:66218573..66218596,+!p7@HMGA2!0.86!9.64!HMGA2;;chr7:96635178..96635181,+!p1@DLX6!0.86!6.27!DLX6;;chr6:41514078..41514158,+!p1@FOXP4!0.85!58.64!FOXP4;;chr6:20402102..20402152,+!p1@E2F3!0.85!26.69!E2F3;;chr17:41277372..41277418,-!p1@BRCA1!0.85!23.32!BRCA1;;chrX:131623026..131623039,-!p5@MBNL3!0.85!6.13!MBNL3;;chr6:155635583..155635644,-!p1@TFB1M!0.84!81.96!TFB1M;;chr5:133450365..133450444,+!p1@TCF7!0.84!28.85!TCF7;;chr10:70320074..70320106,+!p1@TET1!0.84!12.40!TET1;;chr12:3068544..3068597,+!p1@TEAD4!0.83!37.41!TEAD4;;chr16:54320675..54320715,-!p1@IRX3!0.83!12.87!IRX3;;chr7:96634878..96634900,+!p2@DLX6!0.83!5.80!DLX6;;chr20:42295745..42295765,+!p1@MYBL2!0.82!98.61!MYBL2;;chr12:121416455..121416479,+!p2@HNF1A!0.82!5.59!HNF1A;;chr10:51565239..51565263,+!p2@NCOA4!0.81!137.03!NCOA4;;chr2:171571909..171571920,+!p9@SP5!0.81!5.53!SP5;;chrY:2803415..2803468,+!p1@ZFY!0.81!5.53!ZFY;;chr3:119500941..119500961,+!p1@NR1I2!0.81!5.46!NR1I2;;chr17:41623634..41623645,-!p15@ETV4!0.81!5.39!ETV4;;chr7:73038867..73038878,-!p2@MLXIPL!0.81!5.39!MLXIPL;;chr8:71316428..71316459,-!p2@NCOA2!0.80!9.37!NCOA2;;chr9:127533519..127533573,-!p2@NR6A1!0.80!6.61!NR6A1;;chr15:76629123..76629151,+!p1@ISL2!0.80!6.00!ISL2;;chr6:1312155..1312187,+!p2@FOXQ1!0.80!5.32!FOXQ1;;chr7:156803329..156803362,-!p1@MNX1!0.80!5.32!MNX1;;chr7:96634850..96634874,+!p3@DLX6!0.80!5.26!DLX6;;chr18:55102628..55102646,+!p2@ONECUT2!0.80!5.26!ONECUT2;;chr2:178129619..178129633,-!p16@NFE2L2!0.80!5.26!NFE2L2;;chr12:66358080..66358094,+!p15@HMGA2!0.80!5.26!HMGA2;;chr20:306489..306564,+!p1@SOX12!0.79!61.74!SOX12;;chr5:92918919..92918942,+!p1@NR2F1!0.79!25.21!NR2F1;;chr3:141151009..141151033,+!p10@ZBTB38!0.79!5.19!ZBTB38;;chr1:201979703..201979721,+!p2@ELF3!0.78!5.06!ELF3;;chr12:66218420..66218439,+!p12@HMGA2!0.78!5.06!HMGA2;;chr20:30193083..30193098,+!p1@ID1!0.77!432.12!ID1;;chr12:54694653..54694672,-!p2@NFE2!0.77!4.85!NFE2;;chr20:32274179..32274213,-!p1@E2F1!0.76!34.85!E2F1;;chr11:19263160..19263176,-!p1@E2F8!0.76!5.66!E2F8;;chr2:63277978..63277995,+!p2@OTX1!0.76!4.72!OTX1;;chr7:101917407..101917443,+!p3@CUX1!0.76!4.72!CUX1;;chr17:53342451..53342471,+!p4@HLF!0.76!4.72!HLF;;chr20:43029970..43029990,+!p4@HNF4A!0.75!4.58!HNF4A;;chr3:24536253..24536328,-!p1@THRB!0.74!9.03!THRB;;chr19:12163769..12163798,-!p1@ZNF878!0.74!6.00!ZNF878;;chr16:52580953..52580992,-!p2@TOX3!0.74!4.52!TOX3;;chr7:101917447..101917479,+!p4@CUX1!0.74!4.52!CUX1;;chr12:54694807..54694832,-!p3@NFE2!0.74!4.45!NFE2;;chr2:71127699..71127744,+!p1@VAX2!0.73!9.71!VAX2;;chr8:123793988..123794016,+!p1@ZHX2!0.73!8.09!ZHX2;;chr17:40180680..40180726,-!p1@ZNF385C!0.73!4.38!ZNF385C;;chr19:4153613..4153652,+!p1@CREB3L3!0.73!4.38!CREB3L3;;chr1:61547894..61547968,+!p2@NFIA!0.72!13.41!NFIA;;chr5:76383133..76383186,-!p2@ZBED3!0.72!9.44!ZBED3;;chr9:127533582..127533615,-!p1@NR6A1!0.72!6.67!NR6A1;;chr3:40547564..40547616,+!p1@ZNF620!0.72!6.27!ZNF620;;chr2:42721205..42721307,+!p4@MTA3!0.72!4.25!MTA3;;chr3:128207349..128207386,-!p3@GATA2!0.72!4.25!GATA2;;chr16:51185318..51185348,-!p2@SALL1!0.72!4.25!SALL1;;chr3:71630980..71631110,-!p3@FOXP1!0.71!15.84!FOXP1;;chr16:54320158..54320200,-!p5@IRX3!0.71!6.27!IRX3;;chrX:131624020..131624048,-!p9@MBNL3!0.71!5.19!MBNL3;;chr17:36105042..36105060,-!p1@HNF1B!0.71!4.18!HNF1B;;chr2:178129680..178129691,-!p35@NFE2L2!0.71!4.18!NFE2L2;;chr2:171572525..171572547,+!p6@SP5!0.71!4.11!SP5;;chr17:47492203..47492214,-!p3@PHB!0.70!6.61!PHB;;chrX:128657413..128657456,-!p2@SMARCA1!0.69!38.02!SMARCA1;;chr1:23857698..23857733,-!p1@E2F2!0.69!7.75!E2F2;;chr19:12444440..12444455,-!p1@ZNF563!0.69!7.21!ZNF563;;chr16:54320646..54320672,-!p2@IRX3!0.69!6.27!IRX3;;chr12:3068668..3068689,+!p7@TEAD4!0.69!3.91!TEAD4;;chrX:131540410..131540438,-!p13@MBNL3!0.69!3.84!MBNL3;;chr7:27190547..27190591,-!p1@HOXA6!0.69!3.84!HOXA6;;chr20:31350184..31350200,+!p1@DNMT3B!0.68!8.49!DNMT3B;;chr2:10091815..10091864,+!p1@GRHL1!0.68!5.26!GRHL1;;chr16:54320617..54320643,-!p3@IRX3!0.68!5.06!IRX3;;chr8:71316403..71316427,-!p6@NCOA2!0.68!4.65!NCOA2;;chr11:19262421..19262455,-!p3@E2F8!0.68!3.77!E2F8;;chr12:3068634..3068656,+!p5@TEAD4!0.68!3.77!TEAD4;;chr1:151804244..151804310,-!p1@RORC!0.68!3.77!RORC;;chr12:2986206..2986258,-!p2@FOXM1!0.67!25.68!FOXM1;;chr19:23433144..23433204,-!p1@ZNF724P!0.67!18.74!ZNF724P;;chr19:21265028..21265052,+!p2@ZNF714!0.67!7.21!ZNF714;;chr2:171572483..171572501,+!p5@SP5!0.67!3.64!SP5;;chr19:17356436..17356481,-!p3@NR2F6!0.66!6.67!NR2F6;;chr4:4291861..4291913,-!p1@LYAR!0.65!92.88!LYAR;;chr12:115121962..115121987,-!p1@TBX3!0.65!33.57!TBX3;;chr4:4861385..4861398,+!p1@MSX1!0.65!11.53!MSX1;;chr3:71355163..71355209,-!p5@FOXP1!0.65!5.12!FOXP1;;chr12:66218443..66218461,+!p8@HMGA2!0.65!4.58!HMGA2;;chr7:27170359..27170381,-!p1@HOXA4!0.65!3.50!HOXA4;;c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|sample_dev_stage=
|ffid_belonging_in_development=CL:0000134,CL:0000223,UBERON:0001041,UBERON:0002532,UBERON:0006595,UBERON:0003104,UBERON:0004161,UBERON:0009497,UBERON:0010316
|sample_tissue=liver
|sample_donor(cell lot)=
|sample_sex=male
|sample_age=15
|sample_ethnicity=
|rna_rin=
|rna_od260/230=2.18
|rna_od260/280=2.05
|sample_cell_type=hepatocyte
|sample_cell_line=HepG2
|sample_collaboration=Carrie Davis (Cold spring Harbor Laboratories)
|sample_experimental_condition=
|sample_disease=
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_weight_ug=57.042
|rna_concentration=1.14084
|sample_note=
|profile_hcage=CNhs12330,LSID913,release011,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000063,CL:0000066,CL:0000255,CL:0000548
|ancestors_in_anatomy_facet=UBERON:0000015,UBERON:0000061,UBERON:0000062,UBERON:0000077,UBERON:0000465,UBERON:0000466,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000916,UBERON:0000922,UBERON:0000923,UBERON:0000925,UBERON:0000926,UBERON:0000949,UBERON:0001007,UBERON:0001041,UBERON:0001048,UBERON:0001062,UBERON:0001555,UBERON:0002050,UBERON:0002100,UBERON:0002107,UBERON:0002330,UBERON:0002365,UBERON:0002368,UBERON:0002405,UBERON:0002417,UBERON:0002423,UBERON:0002530,UBERON:0002532,UBERON:0003104,UBERON:0003894,UBERON:0004119,UBERON:0004120,UBERON:0004161,UBERON:0004185,UBERON:0004921,UBERON:0005057,UBERON:0005172,UBERON:0005173,UBERON:0005177,UBERON:0005256,UBERON:0005423,UBERON:0006235,UBERON:0006925,UBERON:0007026,UBERON:0008835,UBERON:0008836,UBERON:0009142
|ancestors_in_disease_facet=DOID:0050687,DOID:14566,DOID:162,DOID:305,DOID:4,DOID:7
|sample_description=
|fonse_cell_line=FF:0100224,FF:0101120
|fonse_cell_line=FF:0100224,FF:0101120
|fonse_cell_line_closure=FF:0100224,FF:0101120
|fonse_cell_line_closure=FF:0100224,FF:0101120
Line 66: Line 40:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
|top_motifs=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/hepatocellular%2520carcinoma%2520cell%2520line%253a%2520HepG2%2520ENCODE%252c%2520biol_rep3.CNhs12330.10820-111C1.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/hepatocellular%2520carcinoma%2520cell%2520line%253a%2520HepG2%2520ENCODE%252c%2520biol_rep3.CNhs12330.10820-111C1.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/hepatocellular%2520carcinoma%2520cell%2520line%253a%2520HepG2%2520ENCODE%252c%2520biol_rep3.CNhs12330.10820-111C1.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/hepatocellular%2520carcinoma%2520cell%2520line%253a%2520HepG2%2520ENCODE%252c%2520biol_rep3.CNhs12330.10820-111C1.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/hepatocellular%2520carcinoma%2520cell%2520line%253a%2520HepG2%2520ENCODE%252c%2520biol_rep3.CNhs12330.10820-111C1.hg38.nobarcode.ctss.bed.gz
|id=FF:10820-111C1
|is_a=EFO:0002091;;FF:0000210;;FF:0100599
|is_obsolete=
|library_id=CNhs12330
|library_id_phase_based=2:CNhs12330
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10820
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10820
|name=hepatocellular carcinoma cell line: HepG2 ENCODE, biol_rep3
|namespace=FANTOM5
|part_of=
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|profile_hcage=CNhs12330,LSID913,release011,COMPLETED
|profile_rnaseq=
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|rna_box=111
|rna_catalog_number=
|rna_concentration=1.14084
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_lot_number=
|rna_od260/230=2.18
|rna_od260/280=2.05
|rna_position=C1
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=111C1
|rna_weight_ug=57.042
|sample_age=15
|sample_category=cell lines
|sample_cell_catalog=
|sample_cell_line=HepG2
|sample_cell_lot=
|sample_cell_type=hepatocyte
|sample_collaboration=Carrie Davis (Cold spring Harbor Laboratories)
|sample_company=
|sample_description=
|sample_dev_stage=
|sample_disease=
|sample_donor(cell lot)=
|sample_ethnicity=
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;8.22891671032135e-267!GO:0043231;intracellular membrane-bound organelle;2.89161449432492e-224!GO:0043227;membrane-bound organelle;3.35878834646412e-224!GO:0043226;organelle;9.76908906956293e-220!GO:0043229;intracellular organelle;3.21745434271779e-219!GO:0005737;cytoplasm;3.93092958672489e-190!GO:0044422;organelle part;6.07559332870528e-159!GO:0044446;intracellular organelle part;2.01085934028132e-157!GO:0044444;cytoplasmic part;2.18882768541232e-140!GO:0044237;cellular metabolic process;1.15226081573549e-117!GO:0044238;primary metabolic process;1.86957340360491e-115!GO:0032991;macromolecular complex;9.48312883434434e-106!GO:0043170;macromolecule metabolic process;4.90730505687799e-92!GO:0005634;nucleus;4.90730505687799e-92!GO:0030529;ribonucleoprotein complex;7.71954652745134e-92!GO:0043233;organelle lumen;7.78778167949409e-90!GO:0031974;membrane-enclosed lumen;7.78778167949409e-90!GO:0044428;nuclear part;1.41764887602459e-85!GO:0005739;mitochondrion;1.57655470566646e-84!GO:0003723;RNA binding;7.76909443672507e-84!GO:0006396;RNA processing;4.29326626184761e-58!GO:0005515;protein binding;9.13589547182504e-58!GO:0044429;mitochondrial part;1.65659108839397e-53!GO:0031981;nuclear lumen;2.49968993303223e-53!GO:0005840;ribosome;1.24465997842989e-52!GO:0043234;protein complex;1.54583788926495e-52!GO:0006412;translation;1.03886297664481e-50!GO:0031090;organelle membrane;1.937207637195e-49!GO:0009058;biosynthetic process;3.5299991347975e-49!GO:0019538;protein metabolic process;2.59832839128496e-48!GO:0043283;biopolymer metabolic process;5.13791650269924e-47!GO:0044249;cellular biosynthetic process;3.90909707136601e-46!GO:0031967;organelle envelope;3.38637595396619e-45!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;6.77523728349964e-45!GO:0016071;mRNA metabolic process;7.71688137891557e-45!GO:0031975;envelope;8.54812015403984e-45!GO:0010467;gene expression;5.15315431033663e-44!GO:0003735;structural constituent of ribosome;1.04722736527192e-43!GO:0044267;cellular protein metabolic process;8.99789671154329e-43!GO:0044260;cellular macromolecule metabolic process;1.19640278395908e-42!GO:0016043;cellular component organization and biogenesis;8.72575345347827e-42!GO:0009059;macromolecule biosynthetic process;1.25728810104229e-41!GO:0008380;RNA splicing;1.61707848490191e-40!GO:0015031;protein transport;6.58164423291765e-40!GO:0033036;macromolecule localization;5.12166636990469e-39!GO:0033279;ribosomal subunit;4.29273815532632e-38!GO:0006259;DNA metabolic process;7.71121124690602e-38!GO:0006397;mRNA processing;1.21556275879301e-37!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.30376485563054e-36!GO:0005829;cytosol;2.29328599339713e-36!GO:0045184;establishment of protein localization;9.08709711286152e-36!GO:0065003;macromolecular complex assembly;2.1518671288581e-35!GO:0008104;protein localization;7.32038594015792e-35!GO:0046907;intracellular transport;5.88948179906251e-34!GO:0043228;non-membrane-bound organelle;1.12922632228598e-33!GO:0043232;intracellular non-membrane-bound organelle;1.12922632228598e-33!GO:0005654;nucleoplasm;1.42382389191052e-32!GO:0005740;mitochondrial envelope;1.10764496329925e-31!GO:0003676;nucleic acid binding;1.9674504381111e-31!GO:0006996;organelle organization and biogenesis;3.25894519351988e-31!GO:0022607;cellular component assembly;5.63537828822282e-31!GO:0019866;organelle inner membrane;1.33122567577404e-30!GO:0031966;mitochondrial membrane;2.22097609118574e-29!GO:0007049;cell cycle;3.06434690847869e-29!GO:0005681;spliceosome;2.01085066172287e-28!GO:0006886;intracellular protein transport;3.34753227961123e-28!GO:0005743;mitochondrial inner membrane;1.62833629189393e-27!GO:0005830;cytosolic ribosome (sensu Eukaryota);4.15706361363523e-27!GO:0031980;mitochondrial lumen;2.62862708539208e-26!GO:0005759;mitochondrial matrix;2.62862708539208e-26!GO:0044451;nucleoplasm part;3.80605399284889e-26!GO:0000166;nucleotide binding;9.51532517880913e-25!GO:0006974;response to DNA damage stimulus;8.94724790627702e-24!GO:0000278;mitotic cell cycle;1.19927696289343e-23!GO:0005783;endoplasmic reticulum;1.22729628819875e-23!GO:0044248;cellular catabolic process;1.70177978370702e-23!GO:0016874;ligase activity;6.51401736569284e-22!GO:0044445;cytosolic part;8.47205297730483e-22!GO:0051649;establishment of cellular localization;1.7381708098019e-21!GO:0051641;cellular localization;1.79036396008959e-21!GO:0022402;cell cycle process;1.88615981963022e-21!GO:0015935;small ribosomal subunit;6.66597175951458e-21!GO:0005694;chromosome;7.07387129181826e-21!GO:0016070;RNA metabolic process;9.210539764867e-21!GO:0006119;oxidative phosphorylation;9.79157520420627e-21!GO:0006457;protein folding;1.35385011224693e-20!GO:0005730;nucleolus;1.4011144250936e-20!GO:0022618;protein-RNA complex assembly;5.48620417233453e-20!GO:0000087;M phase of mitotic cell cycle;1.9525024185225e-19!GO:0012505;endomembrane system;2.0214007870086e-19!GO:0006281;DNA repair;2.22301829931292e-19!GO:0051186;cofactor metabolic process;2.70884146341991e-19!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;4.13368660549175e-19!GO:0016462;pyrophosphatase activity;4.54093602770946e-19!GO:0007067;mitosis;4.93969219502751e-19!GO:0044432;endoplasmic reticulum part;5.19514582604481e-19!GO:0044265;cellular macromolecule catabolic process;5.50208177321156e-19!GO:0016817;hydrolase activity, acting on acid anhydrides;5.72306571306523e-19!GO:0044455;mitochondrial membrane part;6.38671803214266e-19!GO:0017111;nucleoside-triphosphatase activity;9.09653715516198e-19!GO:0044427;chromosomal part;1.40719901765471e-18!GO:0015934;large ribosomal subunit;2.67990503436557e-18!GO:0051276;chromosome organization and biogenesis;6.92382978124728e-18!GO:0009719;response to endogenous stimulus;1.99360403547022e-17!GO:0042254;ribosome biogenesis and assembly;2.08376843740689e-17!GO:0051301;cell division;2.56279773129299e-17!GO:0006512;ubiquitin cycle;3.47570069490145e-17!GO:0008135;translation factor activity, nucleic acid binding;6.37219154570781e-17!GO:0043285;biopolymer catabolic process;6.47980640578005e-17!GO:0051603;proteolysis involved in cellular protein catabolic process;6.62191185320338e-17!GO:0022403;cell cycle phase;1.07604603088818e-16!GO:0006260;DNA replication;1.40161278872837e-16!GO:0019941;modification-dependent protein catabolic process;1.56885872219661e-16!GO:0043632;modification-dependent macromolecule catabolic process;1.56885872219661e-16!GO:0006511;ubiquitin-dependent protein catabolic process;1.87620002362181e-16!GO:0044257;cellular protein catabolic process;2.04426679260743e-16!GO:0017076;purine nucleotide binding;2.77134239248832e-16!GO:0005524;ATP binding;2.93253878768914e-16!GO:0030554;adenyl nucleotide binding;4.89624701996463e-16!GO:0042623;ATPase activity, coupled;5.60139782500914e-16!GO:0016887;ATPase activity;5.68518443039483e-16!GO:0006732;coenzyme metabolic process;6.99036117129706e-16!GO:0000502;proteasome complex (sensu Eukaryota);8.62733137001986e-16!GO:0032553;ribonucleotide binding;8.82821867904622e-16!GO:0032555;purine ribonucleotide binding;8.82821867904622e-16!GO:0009057;macromolecule catabolic process;9.64228782453881e-16!GO:0005746;mitochondrial respiratory chain;9.70394603798358e-16!GO:0032559;adenyl ribonucleotide binding;9.94154365452115e-16!GO:0005761;mitochondrial ribosome;1.57040372845743e-15!GO:0000313;organellar ribosome;1.57040372845743e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.74407064221875e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.03840350695673e-15!GO:0009056;catabolic process;3.17228828583016e-15!GO:0048770;pigment granule;5.51952699769233e-15!GO:0042470;melanosome;5.51952699769233e-15!GO:0000398;nuclear mRNA splicing, via spliceosome;6.9689698871075e-15!GO:0000375;RNA splicing, via transesterification reactions;6.9689698871075e-15!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;6.9689698871075e-15!GO:0000279;M phase;1.04133745673175e-14!GO:0008134;transcription factor binding;1.25812063784236e-14!GO:0044453;nuclear membrane part;1.29506902158029e-14!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.48832288352834e-14!GO:0004386;helicase activity;2.23245114079247e-14!GO:0050136;NADH dehydrogenase (quinone) activity;2.26067577329715e-14!GO:0003954;NADH dehydrogenase activity;2.26067577329715e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.26067577329715e-14!GO:0005789;endoplasmic reticulum membrane;3.46544612264006e-14!GO:0031965;nuclear membrane;4.34493695607237e-14!GO:0005635;nuclear envelope;7.09278531268731e-14!GO:0051082;unfolded protein binding;8.98926680470548e-14!GO:0006605;protein targeting;9.07639648821304e-14!GO:0006325;establishment and/or maintenance of chromatin architecture;1.76800762001057e-13!GO:0006323;DNA packaging;2.97565635299785e-13!GO:0030163;protein catabolic process;3.63846171099509e-13!GO:0003743;translation initiation factor activity;6.62880686851181e-13!GO:0016604;nuclear body;8.74163725730025e-13!GO:0005643;nuclear pore;9.84456936412394e-13!GO:0009055;electron carrier activity;1.24020681508221e-12!GO:0042775;organelle ATP synthesis coupled electron transport;1.40807049654052e-12!GO:0042773;ATP synthesis coupled electron transport;1.40807049654052e-12!GO:0006082;organic acid metabolic process;1.45163230099815e-12!GO:0019752;carboxylic acid metabolic process;1.73668700926717e-12!GO:0006413;translational initiation;1.86450591138133e-12!GO:0030964;NADH dehydrogenase complex (quinone);2.27946984638493e-12!GO:0045271;respiratory chain complex I;2.27946984638493e-12!GO:0005747;mitochondrial respiratory chain complex I;2.27946984638493e-12!GO:0050657;nucleic acid transport;2.40000546794751e-12!GO:0051236;establishment of RNA localization;2.40000546794751e-12!GO:0050658;RNA transport;2.40000546794751e-12!GO:0046930;pore complex;2.84261458987314e-12!GO:0006403;RNA localization;3.95753360469193e-12!GO:0006399;tRNA metabolic process;4.53528147089027e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;6.00611257602453e-12!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);6.28891852547525e-12!GO:0048193;Golgi vesicle transport;9.24539251507693e-12!GO:0006364;rRNA processing;1.05642080290626e-11!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;1.19209662392882e-11!GO:0008026;ATP-dependent helicase activity;1.76624100162443e-11!GO:0016072;rRNA metabolic process;2.64804222572002e-11!GO:0016491;oxidoreductase activity;2.74081949177907e-11!GO:0006913;nucleocytoplasmic transport;4.71830378780251e-11!GO:0065002;intracellular protein transport across a membrane;4.82558746379939e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;4.92603201685802e-11!GO:0006461;protein complex assembly;5.19268439805079e-11!GO:0005793;ER-Golgi intermediate compartment;5.25617541256632e-11!GO:0043412;biopolymer modification;5.65291671980232e-11!GO:0016879;ligase activity, forming carbon-nitrogen bonds;9.66796063491011e-11!GO:0051169;nuclear transport;1.31667411492197e-10!GO:0006446;regulation of translational initiation;1.40417296110112e-10!GO:0051726;regulation of cell cycle;1.6630257799654e-10!GO:0016607;nuclear speck;1.927173579573e-10!GO:0051028;mRNA transport;2.49827839389411e-10!GO:0000074;regulation of progression through cell cycle;2.55026597802665e-10!GO:0000785;chromatin;2.55026597802665e-10!GO:0006333;chromatin assembly or disassembly;8.94433999271355e-10!GO:0008565;protein transporter activity;1.33518903305026e-09!GO:0008639;small protein conjugating enzyme activity;1.57148125048337e-09!GO:0016192;vesicle-mediated transport;1.71996790807066e-09!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.73690246084775e-09!GO:0004812;aminoacyl-tRNA ligase activity;1.73690246084775e-09!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.73690246084775e-09!GO:0005794;Golgi apparatus;2.18360919606047e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.33944475578448e-09!GO:0003712;transcription cofactor activity;2.41144396230444e-09!GO:0004842;ubiquitin-protein ligase activity;2.51033717987694e-09!GO:0065004;protein-DNA complex assembly;3.34579806416164e-09!GO:0019787;small conjugating protein ligase activity;3.37535069301292e-09!GO:0009259;ribonucleotide metabolic process;3.52112470183664e-09!GO:0006163;purine nucleotide metabolic process;3.55606215537552e-09!GO:0006915;apoptosis;3.61612387198653e-09!GO:0016740;transferase activity;3.63153643453645e-09!GO:0012501;programmed cell death;3.70307048484449e-09!GO:0043038;amino acid activation;5.01847203924066e-09!GO:0006418;tRNA aminoacylation for protein translation;5.01847203924066e-09!GO:0043039;tRNA aminoacylation;5.01847203924066e-09!GO:0006464;protein modification process;5.04300191275619e-09!GO:0016568;chromatin modification;5.3958795657625e-09!GO:0006366;transcription from RNA polymerase II promoter;6.61442159463157e-09!GO:0030532;small nuclear ribonucleoprotein complex;8.11604211793616e-09!GO:0016779;nucleotidyltransferase activity;1.19441436916319e-08!GO:0016787;hydrolase activity;2.4303799630846e-08!GO:0008219;cell death;2.44938350581992e-08!GO:0016265;death;2.44938350581992e-08!GO:0006888;ER to Golgi vesicle-mediated transport;3.1411655715181e-08!GO:0009150;purine ribonucleotide metabolic process;3.51898819986775e-08!GO:0006752;group transfer coenzyme metabolic process;3.5351658442536e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;3.68956593919335e-08!GO:0006091;generation of precursor metabolites and energy;4.00522574847603e-08!GO:0006164;purine nucleotide biosynthetic process;4.07975967382383e-08!GO:0016881;acid-amino acid ligase activity;4.25693479981918e-08!GO:0051188;cofactor biosynthetic process;4.49964077194363e-08!GO:0045333;cellular respiration;4.74896074010072e-08!GO:0006261;DNA-dependent DNA replication;4.89498466607843e-08!GO:0017038;protein import;4.89498466607843e-08!GO:0009060;aerobic respiration;5.19550765633381e-08!GO:0032446;protein modification by small protein conjugation;5.51035881936274e-08!GO:0005667;transcription factor complex;6.62719471768127e-08!GO:0009260;ribonucleotide biosynthetic process;8.71003590140738e-08!GO:0005819;spindle;9.75819151824584e-08!GO:0016567;protein ubiquitination;1.03042743201962e-07!GO:0051187;cofactor catabolic process;1.25853390037585e-07!GO:0000775;chromosome, pericentric region;1.31036078734979e-07!GO:0043566;structure-specific DNA binding;1.35660321389934e-07!GO:0015986;ATP synthesis coupled proton transport;1.54872645837451e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.54872645837451e-07!GO:0006520;amino acid metabolic process;1.58276868133887e-07!GO:0043687;post-translational protein modification;1.76660097038198e-07!GO:0000245;spliceosome assembly;2.00476745575408e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;2.48252156753985e-07!GO:0005768;endosome;3.0744120652464e-07!GO:0009199;ribonucleoside triphosphate metabolic process;3.15620941962894e-07!GO:0044255;cellular lipid metabolic process;3.18035548877455e-07!GO:0009152;purine ribonucleotide biosynthetic process;3.83846200185305e-07!GO:0003697;single-stranded DNA binding;4.03740446111563e-07!GO:0009141;nucleoside triphosphate metabolic process;4.20547608970187e-07!GO:0046034;ATP metabolic process;4.21669275887228e-07!GO:0009108;coenzyme biosynthetic process;4.2362644982196e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;5.45919621334377e-07!GO:0009144;purine nucleoside triphosphate metabolic process;5.45919621334377e-07!GO:0006099;tricarboxylic acid cycle;5.94533092406791e-07!GO:0046356;acetyl-CoA catabolic process;5.94533092406791e-07!GO:0016469;proton-transporting two-sector ATPase complex;6.41865038695748e-07!GO:0006334;nucleosome assembly;6.57053150419539e-07!GO:0019829;cation-transporting ATPase activity;7.6536016524361e-07!GO:0016853;isomerase activity;7.73377821338385e-07!GO:0015630;microtubule cytoskeleton;8.51773614388377e-07!GO:0045259;proton-transporting ATP synthase complex;8.69271592297709e-07!GO:0006084;acetyl-CoA metabolic process;8.88020534960753e-07!GO:0008094;DNA-dependent ATPase activity;9.25290620842461e-07!GO:0007051;spindle organization and biogenesis;9.55687595124788e-07!GO:0006950;response to stress;9.56350669618922e-07!GO:0007005;mitochondrion organization and biogenesis;1.04696616914104e-06!GO:0051329;interphase of mitotic cell cycle;1.17681738370696e-06!GO:0015078;hydrogen ion transmembrane transporter activity;1.2372133825333e-06!GO:0000151;ubiquitin ligase complex;1.40063933513121e-06!GO:0009142;nucleoside triphosphate biosynthetic process;1.40192382960316e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.40192382960316e-06!GO:0042981;regulation of apoptosis;1.45405914886109e-06!GO:0031497;chromatin assembly;1.51022438285338e-06!GO:0006754;ATP biosynthetic process;1.51022438285338e-06!GO:0006753;nucleoside phosphate metabolic process;1.51022438285338e-06!GO:0005788;endoplasmic reticulum lumen;1.63207087853927e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.6468060260856e-06!GO:0005813;centrosome;1.78469027485534e-06!GO:0006807;nitrogen compound metabolic process;1.78469027485534e-06!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.84398036923671e-06!GO:0003899;DNA-directed RNA polymerase activity;1.86077062529331e-06!GO:0043623;cellular protein complex assembly;1.89791526800833e-06!GO:0003724;RNA helicase activity;2.01071343850789e-06!GO:0009308;amine metabolic process;2.15333071218439e-06!GO:0043067;regulation of programmed cell death;2.18874945673608e-06!GO:0005815;microtubule organizing center;2.42912692192599e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;2.44744812145703e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;2.44744812145703e-06!GO:0006519;amino acid and derivative metabolic process;2.52438271503504e-06!GO:0005657;replication fork;2.64001491155886e-06!GO:0009109;coenzyme catabolic process;2.74047406892972e-06!GO:0051246;regulation of protein metabolic process;3.31882399405031e-06!GO:0005839;proteasome core complex (sensu Eukaryota);4.03149726318107e-06!GO:0051168;nuclear export;4.50140868786473e-06!GO:0016741;transferase activity, transferring one-carbon groups;4.88506408181462e-06!GO:0003713;transcription coactivator activity;4.96971931682811e-06!GO:0048037;cofactor binding;5.16204593634427e-06!GO:0016363;nuclear matrix;5.28166633295758e-06!GO:0008168;methyltransferase activity;6.12846153973897e-06!GO:0000075;cell cycle checkpoint;6.76232390860259e-06!GO:0006613;cotranslational protein targeting to membrane;7.04999187905562e-06!GO:0005762;mitochondrial large ribosomal subunit;9.79808498738061e-06!GO:0000315;organellar large ribosomal subunit;9.79808498738061e-06!GO:0016125;sterol metabolic process;1.096722130985e-05!GO:0016563;transcription activator activity;1.20088937437258e-05!GO:0030120;vesicle coat;1.44355336440194e-05!GO:0030662;coated vesicle membrane;1.44355336440194e-05!GO:0009117;nucleotide metabolic process;1.4597830775806e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;1.46456640871522e-05!GO:0051325;interphase;1.46532705677213e-05!GO:0006629;lipid metabolic process;1.61674756734601e-05!GO:0004298;threonine endopeptidase activity;1.64713832547631e-05!GO:0048475;coated membrane;1.70766333693982e-05!GO:0030117;membrane coat;1.70766333693982e-05!GO:0044452;nucleolar part;1.86525793641868e-05!GO:0046483;heterocycle metabolic process;2.03046643655483e-05!GO:0016859;cis-trans isomerase activity;2.19647940086414e-05!GO:0006302;double-strand break repair;2.85495427528548e-05!GO:0006401;RNA catabolic process;3.00558328643129e-05!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;3.18397355538171e-05!GO:0043069;negative regulation of programmed cell death;3.53993252211632e-05!GO:0003690;double-stranded DNA binding;3.66305668873821e-05!GO:0006402;mRNA catabolic process;3.96888000795905e-05!GO:0051170;nuclear import;3.99898455407512e-05!GO:0043066;negative regulation of apoptosis;4.04187601984918e-05!GO:0031324;negative regulation of cellular metabolic process;4.09034228251543e-05!GO:0000314;organellar small ribosomal subunit;4.41384438659976e-05!GO:0005763;mitochondrial small ribosomal subunit;4.41384438659976e-05!GO:0005770;late endosome;4.59293452765384e-05!GO:0006606;protein import into nucleus;4.68220825616832e-05!GO:0006066;alcohol metabolic process;4.95783317008133e-05!GO:0045454;cell redox homeostasis;5.43690017062905e-05!GO:0016126;sterol biosynthetic process;5.50676871360972e-05!GO:0015980;energy derivation by oxidation of organic compounds;5.73705722118048e-05!GO:0044440;endosomal part;6.26793993791951e-05!GO:0010008;endosome membrane;6.26793993791951e-05!GO:0044262;cellular carbohydrate metabolic process;6.26793993791951e-05!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;6.28203163003843e-05!GO:0051427;hormone receptor binding;8.10635961323901e-05!GO:0006695;cholesterol biosynthetic process;8.53494073442633e-05!GO:0016564;transcription repressor activity;8.57170448735122e-05!GO:0008654;phospholipid biosynthetic process;9.21726529123633e-05!GO:0008203;cholesterol metabolic process;9.27470970558929e-05!GO:0050662;coenzyme binding;9.88795028127925e-05!GO:0030880;RNA polymerase complex;0.000100232365742962!GO:0043021;ribonucleoprotein binding;0.00010209492160775!GO:0005798;Golgi-associated vesicle;0.00010425569319563!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000115851786850302!GO:0019843;rRNA binding;0.000115851786850302!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000117899057719591!GO:0008186;RNA-dependent ATPase activity;0.000121210321683443!GO:0009892;negative regulation of metabolic process;0.000125248938369483!GO:0050794;regulation of cellular process;0.000132157375691882!GO:0007059;chromosome segregation;0.000135337283311318!GO:0000776;kinetochore;0.000137813382895931!GO:0030867;rough endoplasmic reticulum membrane;0.000140145472811495!GO:0008652;amino acid biosynthetic process;0.000140752348765536!GO:0051052;regulation of DNA metabolic process;0.000160684568687658!GO:0035257;nuclear hormone receptor binding;0.000166521328405873!GO:0008610;lipid biosynthetic process;0.000173882083742649!GO:0042802;identical protein binding;0.000183222664892781!GO:0045786;negative regulation of progression through cell cycle;0.000198180550726152!GO:0008033;tRNA processing;0.000208130170372021!GO:0003729;mRNA binding;0.000212776607993763!GO:0043681;protein import into mitochondrion;0.000234915918581515!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000235758899747102!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.000249336843092959!GO:0000428;DNA-directed RNA polymerase complex;0.000249336843092959!GO:0003682;chromatin binding;0.000258918604169718!GO:0005048;signal sequence binding;0.000260637605708085!GO:0019899;enzyme binding;0.000280952336232687!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.000284244980760624!GO:0005791;rough endoplasmic reticulum;0.000289450589058231!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000320630174787701!GO:0015399;primary active transmembrane transporter activity;0.000320630174787701!GO:0031968;organelle outer membrane;0.000344237963533925!GO:0042157;lipoprotein metabolic process;0.000345210759714831!GO:0004004;ATP-dependent RNA helicase activity;0.000345261790843814!GO:0019867;outer membrane;0.000345960478258493!GO:0031988;membrane-bound vesicle;0.000366299929413357!GO:0003684;damaged DNA binding;0.000410458012285297!GO:0003714;transcription corepressor activity;0.000417705112408343!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000440135970464085!GO:0006338;chromatin remodeling;0.000445841603682843!GO:0016023;cytoplasmic membrane-bound vesicle;0.000463849006314535!GO:0019222;regulation of metabolic process;0.000467017156476277!GO:0000786;nucleosome;0.000519399170716799!GO:0006612;protein targeting to membrane;0.000528373722189625!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000543598117889915!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00061158609709751!GO:0006414;translational elongation;0.000620087483702255!GO:0006352;transcription initiation;0.000628476478841785!GO:0007088;regulation of mitosis;0.000641035249070396!GO:0005741;mitochondrial outer membrane;0.00065187823157089!GO:0030134;ER to Golgi transport vesicle;0.000664403534651853!GO:0032508;DNA duplex unwinding;0.000685612838486205!GO:0032392;DNA geometric change;0.000685612838486205!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000705310564277452!GO:0006383;transcription from RNA polymerase III promoter;0.000720488894480743!GO:0000059;protein import into nucleus, docking;0.000803704120923198!GO:0051252;regulation of RNA metabolic process;0.000806236770942554!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000842413135873537!GO:0006916;anti-apoptosis;0.000852377846854014!GO:0032787;monocarboxylic acid metabolic process;0.00093439971794879!GO:0022890;inorganic cation transmembrane transporter activity;0.000949353478262546!GO:0044431;Golgi apparatus part;0.00100484936977415!GO:0051920;peroxiredoxin activity;0.00102845893996738!GO:0005769;early endosome;0.00103798768782376!GO:0016408;C-acyltransferase activity;0.00107589395370828!GO:0005684;U2-dependent spliceosome;0.00111453242809619!GO:0006626;protein targeting to mitochondrion;0.00113242325913251!GO:0031982;vesicle;0.00114541506665879!GO:0006839;mitochondrial transport;0.00119417638328029!GO:0048500;signal recognition particle;0.00120648755584865!GO:0006118;electron transport;0.00121990147701345!GO:0006595;polyamine metabolic process;0.00125784323213632!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.00130386618981888!GO:0030521;androgen receptor signaling pathway;0.00130660658837435!GO:0006268;DNA unwinding during replication;0.0013789432710267!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00140313998356964!GO:0007052;mitotic spindle organization and biogenesis;0.00140383364334414!GO:0048523;negative regulation of cellular process;0.00141761744069949!GO:0007093;mitotic cell cycle checkpoint;0.00143905199513669!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00148441335825275!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00148441335825275!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00148441335825275!GO:0000082;G1/S transition of mitotic cell cycle;0.0014980267324377!GO:0043284;biopolymer biosynthetic process;0.00150152158112493!GO:0006405;RNA export from nucleus;0.00151460646898197!GO:0042393;histone binding;0.00152610374397379!GO:0033116;ER-Golgi intermediate compartment membrane;0.00154257863134574!GO:0007006;mitochondrial membrane organization and biogenesis;0.00164302439103738!GO:0006793;phosphorus metabolic process;0.00169015752892185!GO:0006796;phosphate metabolic process;0.00169015752892185!GO:0031410;cytoplasmic vesicle;0.0017220334623822!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0017220334623822!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0017220334623822!GO:0051659;maintenance of mitochondrion localization;0.0017220334623822!GO:0051657;maintenance of organelle localization;0.0017220334623822!GO:0019439;aromatic compound catabolic process;0.00183319892232468!GO:0008139;nuclear localization sequence binding;0.00184915329599584!GO:0030127;COPII vesicle coat;0.00186101141575042!GO:0012507;ER to Golgi transport vesicle membrane;0.00186101141575042!GO:0051789;response to protein stimulus;0.00190579216719598!GO:0006986;response to unfolded protein;0.00190579216719598!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00192972311270781!GO:0003678;DNA helicase activity;0.00193350258775265!GO:0031072;heat shock protein binding;0.00194799238671053!GO:0003746;translation elongation factor activity;0.00198565380772174!GO:0042158;lipoprotein biosynthetic process;0.00201795072650809!GO:0005885;Arp2/3 protein complex;0.00207060529292092!GO:0009064;glutamine family amino acid metabolic process;0.00209433968431425!GO:0043492;ATPase activity, coupled to movement of substances;0.00217551122695681!GO:0004527;exonuclease activity;0.00219796535831044!GO:0000096;sulfur amino acid metabolic process;0.00232563031893622!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0023562452540198!GO:0005773;vacuole;0.00244635138343029!GO:0043488;regulation of mRNA stability;0.0024585441034463!GO:0043487;regulation of RNA stability;0.0024585441034463!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.00251599068835062!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00254684558280375!GO:0009063;amino acid catabolic process;0.00257974919526483!GO:0003711;transcription elongation regulator activity;0.00262947663518689!GO:0008022;protein C-terminus binding;0.00264441852105973!GO:0009303;rRNA transcription;0.00270252129612779!GO:0006611;protein export from nucleus;0.00270635315271047!GO:0016407;acetyltransferase activity;0.00272467841249251!GO:0005637;nuclear inner membrane;0.00276094412157108!GO:0008312;7S RNA binding;0.00283070975544937!GO:0005876;spindle microtubule;0.00283594580845933!GO:0000922;spindle pole;0.00290649390893818!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00298088176879801!GO:0006270;DNA replication initiation;0.00309014180562705!GO:0016746;transferase activity, transferring acyl groups;0.00309808842457529!GO:0047485;protein N-terminus binding;0.00310189259509095!GO:0016251;general RNA polymerase II transcription factor activity;0.00313089231977671!GO:0005777;peroxisome;0.00313089231977671!GO:0042579;microbody;0.00313089231977671!GO:0000819;sister chromatid segregation;0.00313089231977671!GO:0006818;hydrogen transport;0.00318081494203167!GO:0004518;nuclease activity;0.00321663095769177!GO:0005975;carbohydrate metabolic process;0.00327037501123913!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00330856607108535!GO:0048471;perinuclear region of cytoplasm;0.00335118717595282!GO:0016747;transferase activity, transferring groups other than amino-acyl groups;0.00337610163583385!GO:0000049;tRNA binding;0.00347190283861842!GO:0009165;nucleotide biosynthetic process;0.00355546793208037!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00356644427320801!GO:0045047;protein targeting to ER;0.00356644427320801!GO:0035258;steroid hormone receptor binding;0.00357556356360944!GO:0046474;glycerophospholipid biosynthetic process;0.00358059191839504!GO:0008202;steroid metabolic process;0.00377897411970415!GO:0051087;chaperone binding;0.00377983518998798!GO:0031124;mRNA 3'-end processing;0.00385596892965759!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;0.00389493005010325!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00394416795464622!GO:0030658;transport vesicle membrane;0.00395254180607393!GO:0000070;mitotic sister chromatid segregation;0.004045996290193!GO:0009451;RNA modification;0.00404948705466128!GO:0031252;leading edge;0.00405706650182352!GO:0015992;proton transport;0.0041209857539601!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.00418539304686114!GO:0008629;induction of apoptosis by intracellular signals;0.00421925295764704!GO:0006979;response to oxidative stress;0.00460921896844269!GO:0005665;DNA-directed RNA polymerase II, core complex;0.00471285113051874!GO:0030133;transport vesicle;0.00481332228770941!GO:0016481;negative regulation of transcription;0.00482539871704371!GO:0031647;regulation of protein stability;0.00497269848867891!GO:0004576;oligosaccharyl transferase activity;0.00523068661740302!GO:0006596;polyamine biosynthetic process;0.00523068661740302!GO:0006541;glutamine metabolic process;0.00527318341474!GO:0009112;nucleobase metabolic process;0.00543157717984753!GO:0008415;acyltransferase activity;0.00555358685752612!GO:0006749;glutathione metabolic process;0.00559778106545912!GO:0006650;glycerophospholipid metabolic process;0.00562622326648739!GO:0006144;purine base metabolic process;0.00563683887432648!GO:0006497;protein amino acid lipidation;0.00575720660535791!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.00578947727906268!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00586240576926448!GO:0000323;lytic vacuole;0.00587968887788643!GO:0005764;lysosome;0.00587968887788643!GO:0016197;endosome transport;0.00591832093013332!GO:0006310;DNA recombination;0.00597292534955168!GO:0007040;lysosome organization and biogenesis;0.00610718880898803!GO:0008632;apoptotic program;0.00625687117311239!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00629588238555263!GO:0015002;heme-copper terminal oxidase activity;0.00629588238555263!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00629588238555263!GO:0004129;cytochrome-c oxidase activity;0.00629588238555263!GO:0031323;regulation of cellular metabolic process;0.00642773523553918!GO:0006284;base-excision repair;0.00649808436166883!GO:0016310;phosphorylation;0.00656604793505258!GO:0050789;regulation of biological process;0.00657956006236897!GO:0006275;regulation of DNA replication;0.00672541363593702!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.00678238668067151!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00680270553819254!GO:0046983;protein dimerization activity;0.00682422829311941!GO:0048519;negative regulation of biological process;0.0068537865843907!GO:0042770;DNA damage response, signal transduction;0.00686758486262364!GO:0044270;nitrogen compound catabolic process;0.00710105009953262!GO:0005758;mitochondrial intermembrane space;0.00711062796184668!GO:0004532;exoribonuclease activity;0.00760320203803466!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.00760320203803466!GO:0003702;RNA polymerase II transcription factor activity;0.00763017025211493!GO:0065009;regulation of a molecular function;0.00800434590943987!GO:0043022;ribosome binding;0.00815107033642241!GO:0006891;intra-Golgi vesicle-mediated transport;0.00822827006456079!GO:0051716;cellular response to stimulus;0.00840202592269259!GO:0030660;Golgi-associated vesicle membrane;0.00843114081107684!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.00872394917222095!GO:0000725;recombinational repair;0.00872394917222095!GO:0000724;double-strand break repair via homologous recombination;0.00872394917222095!GO:0008250;oligosaccharyl transferase complex;0.00889915535871724!GO:0006354;RNA elongation;0.00907934227657873!GO:0005832;chaperonin-containing T-complex;0.00926487052057482!GO:0008180;signalosome;0.00977339327993235!GO:0009310;amine catabolic process;0.0101081279384687!GO:0051101;regulation of DNA binding;0.0102382185392832!GO:0007017;microtubule-based process;0.0102830242139927!GO:0006642;triacylglycerol mobilization;0.0104027319290887!GO:0043596;nuclear replication fork;0.0104810969013805!GO:0005996;monosaccharide metabolic process;0.0105072112099772!GO:0006289;nucleotide-excision repair;0.0105536213683838!GO:0051539;4 iron, 4 sulfur cluster binding;0.0105985910355189!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.0107131881326551!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0108536204812859!GO:0043624;cellular protein complex disassembly;0.0108978369167983!GO:0001889;liver development;0.0114081566275616!GO:0004300;enoyl-CoA hydratase activity;0.0116977943528494!GO:0009066;aspartate family amino acid metabolic process;0.0119301783074053!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0122108438761172!GO:0000178;exosome (RNase complex);0.0122980224356985!GO:0006790;sulfur metabolic process;0.0125775401274025!GO:0004029;aldehyde dehydrogenase (NAD) activity;0.0126188041952047!GO:0050750;low-density lipoprotein receptor binding;0.012782056059677!GO:0051287;NAD binding;0.0130221767694305!GO:0030663;COPI coated vesicle membrane;0.0131188826146899!GO:0030126;COPI vesicle coat;0.0131188826146899!GO:0031123;RNA 3'-end processing;0.0131591054426733!GO:0046489;phosphoinositide biosynthetic process;0.0132061651857938!GO:0016272;prefoldin complex;0.0132061651857938!GO:0008538;proteasome activator activity;0.0134516862243939!GO:0006378;mRNA polyadenylation;0.0134562074479527!GO:0050681;androgen receptor binding;0.0136027023650839!GO:0032200;telomere organization and biogenesis;0.0140578497254796!GO:0000723;telomere maintenance;0.0140578497254796!GO:0019318;hexose metabolic process;0.0141537586585464!GO:0043407;negative regulation of MAP kinase activity;0.0149980165882266!GO:0005525;GTP binding;0.0159077540623742!GO:0018196;peptidyl-asparagine modification;0.0159077540623742!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0159077540623742!GO:0000139;Golgi membrane;0.0160505305895137!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0166304088101564!GO:0007033;vacuole organization and biogenesis;0.0166653289247086!GO:0003924;GTPase activity;0.0166653289247086!GO:0008286;insulin receptor signaling pathway;0.0167452134744073!GO:0003857;3-hydroxyacyl-CoA dehydrogenase activity;0.0168286228150875!GO:0030518;steroid hormone receptor signaling pathway;0.0168774497076441!GO:0004177;aminopeptidase activity;0.0168879039386629!GO:0006400;tRNA modification;0.0169291340942849!GO:0033673;negative regulation of kinase activity;0.0169515366268744!GO:0006469;negative regulation of protein kinase activity;0.0169515366268744!GO:0031970;organelle envelope lumen;0.0169901840253006!GO:0006417;regulation of translation;0.017198224554894!GO:0030176;integral to endoplasmic reticulum membrane;0.017198224554894!GO:0006730;one-carbon compound metabolic process;0.0172332478327578!GO:0006506;GPI anchor biosynthetic process;0.0175518125667406!GO:0006631;fatty acid metabolic process;0.0177486556082046!GO:0040029;regulation of gene expression, epigenetic;0.0180794266133358!GO:0000152;nuclear ubiquitin ligase complex;0.0181900360924972!GO:0009074;aromatic amino acid family catabolic process;0.018276814006551!GO:0006778;porphyrin metabolic process;0.0182884836226648!GO:0033013;tetrapyrrole metabolic process;0.0182884836226648!GO:0016790;thiolester hydrolase activity;0.0184020741264058!GO:0050748;negative regulation of lipoprotein metabolic process;0.0187547817745484!GO:0005874;microtubule;0.0190587875265242!GO:0031326;regulation of cellular biosynthetic process;0.0192069729846604!GO:0031570;DNA integrity checkpoint;0.0193780830033516!GO:0000792;heterochromatin;0.0195819335005097!GO:0000339;RNA cap binding;0.0198097347478661!GO:0006740;NADPH regeneration;0.019935617335016!GO:0006098;pentose-phosphate shunt;0.019935617335016!GO:0000097;sulfur amino acid biosynthetic process;0.0203011276485964!GO:0005905;coated pit;0.0203762517778814!GO:0005663;DNA replication factor C complex;0.0203762517778814!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0203869005598224!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.020542164394231!GO:0015682;ferric iron transport;0.0207029017123976!GO:0015091;ferric iron transmembrane transporter activity;0.0207029017123976!GO:0031643;positive regulation of myelination;0.0207029017123976!GO:0051540;metal cluster binding;0.0207167255676908!GO:0051536;iron-sulfur cluster binding;0.0207167255676908!GO:0016835;carbon-oxygen lyase activity;0.0213037722376514!GO:0000209;protein polyubiquitination;0.0213037722376514!GO:0051348;negative regulation of transferase activity;0.0213934577696775!GO:0006505;GPI anchor metabolic process;0.0217077304021427!GO:0001558;regulation of cell growth;0.0217077304021427!GO:0032984;macromolecular complex disassembly;0.0218747498789582!GO:0008361;regulation of cell size;0.0218916569542469!GO:0008320;protein transmembrane transporter activity;0.0218916569542469!GO:0006376;mRNA splice site selection;0.0221238323321153!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0221238323321153!GO:0031625;ubiquitin protein ligase binding;0.0222290801129948!GO:0004003;ATP-dependent DNA helicase activity;0.0223752424774059!GO:0005669;transcription factor TFIID complex;0.0227276772633286!GO:0007021;tubulin folding;0.0230770064949289!GO:0000781;chromosome, telomeric region;0.0233340547536082!GO:0003756;protein disulfide isomerase activity;0.0233882175616102!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0233882175616102!GO:0003988;acetyl-CoA C-acyltransferase activity;0.0237938197780534!GO:0000287;magnesium ion binding;0.024040011950648!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0249236721178844!GO:0030027;lamellipodium;0.0254281511339216!GO:0043601;nuclear replisome;0.0254337074264367!GO:0030894;replisome;0.0254337074264367!GO:0016044;membrane organization and biogenesis;0.0255997541340938!GO:0006350;transcription;0.0257147862897984!GO:0006301;postreplication repair;0.0262106152297601!GO:0006720;isoprenoid metabolic process;0.0264089357256914!GO:0006379;mRNA cleavage;0.0268644376175223!GO:0030261;chromosome condensation;0.0280398081407752!GO:0030137;COPI-coated vesicle;0.0281136754590431!GO:0006518;peptide metabolic process;0.0285391562558981!GO:0043241;protein complex disassembly;0.0288047415993248!GO:0004540;ribonuclease activity;0.0288047415993248!GO:0051098;regulation of binding;0.0288321869115332!GO:0015631;tubulin binding;0.0289127571616653!GO:0008536;Ran GTPase binding;0.0289936558231403!GO:0006081;aldehyde metabolic process;0.0290156387732628!GO:0004722;protein serine/threonine phosphatase activity;0.0290294013899619!GO:0004680;casein kinase activity;0.0297151847410484!GO:0009116;nucleoside metabolic process;0.0297151847410484!GO:0032259;methylation;0.0297657673738541!GO:0005652;nuclear lamina;0.0300948995881792!GO:0005732;small nucleolar ribonucleoprotein complex;0.0301637358269383!GO:0046982;protein heterodimerization activity;0.031220026986551!GO:0044438;microbody part;0.0314356826326403!GO:0044439;peroxisomal part;0.0314356826326403!GO:0009067;aspartate family amino acid biosynthetic process;0.0317920281907316!GO:0051053;negative regulation of DNA metabolic process;0.0320030101585043!GO:0008234;cysteine-type peptidase activity;0.0320330220801309!GO:0030384;phosphoinositide metabolic process;0.0326224847286563!GO:0001887;selenium metabolic process;0.0326224847286563!GO:0007034;vacuolar transport;0.0330683983133668!GO:0009889;regulation of biosynthetic process;0.0331245840156741!GO:0016049;cell growth;0.0333812812449939!GO:0030036;actin cytoskeleton organization and biogenesis;0.0339979718221328!GO:0031406;carboxylic acid binding;0.0341581336912255!GO:0043189;H4/H2A histone acetyltransferase complex;0.0344431098838232!GO:0000228;nuclear chromosome;0.0345272744816357!GO:0005784;translocon complex;0.0348405825808636!GO:0008299;isoprenoid biosynthetic process;0.0349117421832063!GO:0044272;sulfur compound biosynthetic process;0.0349807979247878!GO:0047115;trans-1,2-dihydrobenzene-1,2-diol dehydrogenase activity;0.0350845958129298!GO:0007010;cytoskeleton organization and biogenesis;0.0351270538823595!GO:0007004;telomere maintenance via telomerase;0.0358342925102683!GO:0008216;spermidine metabolic process;0.0358631762188164!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0360679344037595!GO:0043414;biopolymer methylation;0.0365449866077984!GO:0042026;protein refolding;0.0369014063995037!GO:0008537;proteasome activator complex;0.0372875879385316!GO:0009225;nucleotide-sugar metabolic process;0.0373445333235044!GO:0019438;aromatic compound biosynthetic process;0.0378597886078646!GO:0046467;membrane lipid biosynthetic process;0.0378597886078646!GO:0004659;prenyltransferase activity;0.037914540080396!GO:0045893;positive regulation of transcription, DNA-dependent;0.0382895640313748!GO:0007346;regulation of progression through mitotic cell cycle;0.0388716093010215!GO:0019783;small conjugating protein-specific protease activity;0.0388716093010215!GO:0006635;fatty acid beta-oxidation;0.0389282607315387!GO:0017166;vinculin binding;0.039175726774956!GO:0008430;selenium binding;0.0393871164103237!GO:0000726;non-recombinational repair;0.0393871164103237!GO:0008295;spermidine biosynthetic process;0.0394438889192371!GO:0003985;acetyl-CoA C-acetyltransferase activity;0.0395483593699661!GO:0006907;pinocytosis;0.0400530655631851!GO:0031902;late endosome membrane;0.0400530655631851!GO:0004873;asialoglycoprotein receptor activity;0.0403061387166645!GO:0008143;poly(A) binding;0.0405676776336244!GO:0031577;spindle checkpoint;0.040579980783276!GO:0022411;cellular component disassembly;0.0406170097375339!GO:0022406;membrane docking;0.040628643882678!GO:0048278;vesicle docking;0.040628643882678!GO:0042168;heme metabolic process;0.0406654668526953!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.040863215719054!GO:0000175;3'-5'-exoribonuclease activity;0.0415503834802418!GO:0045045;secretory pathway;0.0416307022648425!GO:0019959;interleukin-8 binding;0.0424771229354502!GO:0010037;response to carbon dioxide;0.0424771229354502!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.0431679994495774!GO:0045039;protein import into mitochondrial inner membrane;0.0431679994495774!GO:0005774;vacuolar membrane;0.0431679994495774!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0432905933338285!GO:0004843;ubiquitin-specific protease activity;0.043470071241563!GO:0031371;ubiquitin conjugating enzyme complex;0.0439013879119889!GO:0044450;microtubule organizing center part;0.0440214067451436!GO:0009309;amine biosynthetic process;0.0440749999886112!GO:0006564;L-serine biosynthetic process;0.044570562947503!GO:0016836;hydro-lyase activity;0.04564118465359!GO:0016620;oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor;0.0463302082464789!GO:0006356;regulation of transcription from RNA polymerase I promoter;0.0465285692433799!GO:0000123;histone acetyltransferase complex;0.0465389483520644!GO:0007041;lysosomal transport;0.0470317180249386!GO:0019321;pentose metabolic process;0.047084807695552!GO:0008408;3'-5' exonuclease activity;0.0473556296039642!GO:0031903;microbody membrane;0.0474040899632427!GO:0005778;peroxisomal membrane;0.0474040899632427!GO:0019511;peptidyl-proline hydroxylation;0.0474040899632427!GO:0018208;peptidyl-proline modification;0.0474040899632427!GO:0019471;4-hydroxyproline metabolic process;0.0474040899632427!GO:0018401;peptidyl-proline hydroxylation to 4-hydroxy-L-proline;0.0474040899632427!GO:0043065;positive regulation of apoptosis;0.0475737445732234!GO:0004185;serine carboxypeptidase activity;0.0476514156500074!GO:0030508;thiol-disulfide exchange intermediate activity;0.0476514156500074!GO:0006879;cellular iron ion homeostasis;0.0476514156500074!GO:0055072;iron ion homeostasis;0.0476514156500074!GO:0002018;renin-angiotensin regulation of aldosterone production;0.0476514156500074!GO:0048143;astrocyte activation;0.0476514156500074!GO:0046622;positive regulation of organ growth;0.0476514156500074!GO:0031701;angiotensin receptor binding;0.0476514156500074!GO:0031703;type 2 angiotensin receptor binding;0.0476514156500074!GO:0045723;positive regulation of fatty acid biosynthetic process;0.0476514156500074!GO:0001999;renal response to blood flow during renin-angiotensin regulation of systemic arterial blood pressure;0.0476514156500074!GO:0042756;drinking behavior;0.0476514156500074!GO:0002019;angiotensin mediated regulation of renal output;0.0476514156500074!GO:0031702;type 1 angiotensin receptor binding;0.0476514156500074!GO:0001998;angiotensin mediated vasoconstriction involved in regulation of systemic arterial blood pressure;0.0476514156500074!GO:0009124;nucleoside monophosphate biosynthetic process;0.0477183107711627!GO:0009123;nucleoside monophosphate metabolic process;0.0477183107711627!GO:0010468;regulation of gene expression;0.0477183107711627!GO:0030118;clathrin coat;0.0477415078639011!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0480035552750248!GO:0003725;double-stranded RNA binding;0.0480273112270006!GO:0035267;NuA4 histone acetyltransferase complex;0.0484394096381427!GO:0008017;microtubule binding;0.0485856045404713!GO:0001725;stress fiber;0.0491957688500635!GO:0032432;actin filament bundle;0.0491957688500635!GO:0016903;oxidoreductase activity, acting on the aldehyde or oxo group of donors;0.0493708433308699!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0496951370735769!GO:0008097;5S rRNA binding;0.0497336623842935!GO:0016584;nucleosome positioning;0.0498625789274497
|sample_id=10820
|sample_note=
|sample_sex=male
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=liver
|top_motifs=HNF4A_NR2F1,2:4.79489922739;HNF1A:4.15674580962;RXR{A,B,G}_{NR1H2,PPAR}dimers:3.70886331688;FOXA2:3.28094513886;LEF1_TCF7_TCF7L1,2:2.19703770575;bHLH_family:2.14861616564;FOX{F1,F2,J1}:1.86324120674;NFY{A,B,C}:1.66870148087;NR6A1:1.53232542716;ONECUT1,2:1.47765464728;E2F1..5:1.47592317324;ELK1,4_GABP{A,B1}:1.23872793575;NR1H4:1.23461280756;ADNP_IRX_SIX_ZHX:1.22934199989;ZNF143:1.22412043089;YY1:1.20862518294;EN1,2:1.06665004701;SOX{8,9,10}:1.06174733679;PBX1:1.04782136736;AIRE:0.98829447571;GFI1:0.98484139588;NRF1:0.920649391277;NR5A1,2:0.874768753787;SNAI1..3:0.856303376606;PAX3,7:0.837744510058;RORA:0.79861321017;NKX3-2:0.771750133057;TOPORS:0.759765491852;MYB:0.697958246999;SOX2:0.683448595365;LHX3,4:0.662898727197;ZEB1:0.65942116707;CEBPA,B_DDIT3:0.613502778284;RXRA_VDR{dimer}:0.586732412275;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.575912015516;FOXM1:0.567846136374;ALX4:0.497064052524;ESRRA:0.47231716769;FOX{D1,D2}:0.450645710745;PITX1..3:0.425379426971;TP53:0.423384381828;TFDP1:0.410184480164;EBF1:0.344287564557;MYOD1:0.329055318413;HIC1:0.324836155651;AR:0.320502696575;XCPE1{core}:0.300921503577;FOXD3:0.299343646739;HLF:0.253034137309;NFIL3:0.247875662216;POU6F1:0.19377342825;PPARG:0.181084785694;ELF1,2,4:0.157234911242;CUX2:0.151659047194;FOXP1:0.150339252802;STAT5{A,B}:0.118364349087;DBP:0.111274202656;PAX4:0.102549210155;MTE{core}:0.0843819045578;GATA6:0.0704830260118;SP1:0.0676730424047;MAZ:0.0574476049822;ZFP161:0.0432753769729;BREu{core}:0.034747475777;NKX3-1:0.0288551279048;UFEwm:-0.00115933343807;SOX5:-0.00375613758848;RBPJ:-0.0136885623597;TFCP2:-0.028940951366;TFAP2{A,C}:-0.0526428295901;ARID5B:-0.059325773711;SREBF1,2:-0.0727296082073;PAX2:-0.0964500460761;FOXQ1:-0.0971982231484;SOX17:-0.0997918067386;EVI1:-0.135058742636;T:-0.136089760285;CDC5L:-0.141628942961;PAX1,9:-0.1440933795;VSX1,2:-0.14497351687;TBX4,5:-0.152203793972;RXR{A,B,G}:-0.156010726229;NFKB1_REL_RELA:-0.16415423961;KLF4:-0.165227177282;STAT2,4,6:-0.165517342186;HOXA9_MEIS1:-0.189971082165;MED-1{core}:-0.205918083093;AHR_ARNT_ARNT2:-0.214634109497;LMO2:-0.233844518225;GLI1..3:-0.235065286609;PATZ1:-0.237935863777;TEAD1:-0.259816226482;POU3F1..4:-0.261919752527;ATF5_CREB3:-0.292632998736;MTF1:-0.303324225714;HOX{A5,B5}:-0.343292041025;STAT1,3:-0.346937591822;TLX1..3_NFIC{dimer}:-0.361979596959;TAL1_TCF{3,4,12}:-0.378302518924;ATF6:-0.385324785709;FOXN1:-0.389810556209;FOSL2:-0.404244924148;BPTF:-0.41064733055;ZNF148:-0.418390428381;NFE2:-0.421036518576;ESR1:-0.444171029788;CREB1:-0.447163137058;ZNF423:-0.449556038679;IRF7:-0.455765145368;DMAP1_NCOR{1,2}_SMARC:-0.45683060099;HOX{A4,D4}:-0.459790075376;HOX{A6,A7,B6,B7}:-0.467895264854;FOXO1,3,4:-0.470025126306;IKZF2:-0.474506016029;HES1:-0.50934388326;OCT4_SOX2{dimer}:-0.509672867534;POU2F1..3:-0.51370714317;REST:-0.521637185438;NKX6-1,2:-0.539231323858;NKX2-3_NKX2-5:-0.54144901116;IRF1,2:-0.550938756496;GTF2A1,2:-0.554792862096;FOS_FOS{B,L1}_JUN{B,D}:-0.559606984292;GATA4:-0.571006511047;NFE2L2:-0.572143578382;NANOG{mouse}:-0.584195857887;BACH2:-0.596434522525;POU5F1:-0.598747557707;PAX5:-0.598789630056;NR3C1:-0.614164326561;RFX2..5_RFXANK_RFXAP:-0.625690901673;CDX1,2,4:-0.630608083756;ATF4:-0.637273290144;FOXP3:-0.638749043053;EGR1..3:-0.641133517395;ZBTB16:-0.644252011753;TBP:-0.6488505454;IKZF1:-0.654981581328;PDX1:-0.656384877817;SPI1:-0.659815756185;ATF2:-0.660971287191;SPIB:-0.66265416194;PAX8:-0.663390241483;XBP1:-0.663461946158;RREB1:-0.672884714426;ALX1:-0.676959472369;NFIX:-0.706670308976;TFAP2B:-0.738307727604;MYBL2:-0.740243696716;SRF:-0.787934317686;NHLH1,2:-0.78864316682;HSF1,2:-0.793263623152;MEF2{A,B,C,D}:-0.803685989872;RFX1:-0.842381476787;NKX2-2,8:-0.847533213266;GTF2I:-0.851049930485;JUN:-0.851634836205;HMGA1,2:-0.85549949622;HAND1,2:-0.857144696788;MYFfamily:-0.876758402729;RUNX1..3:-0.888916293547;GCM1,2:-0.891126046233;ZBTB6:-0.943957369801;CRX:-1.00956012356;ETS1,2:-1.04814527658;ZIC1..3:-1.0537545522;POU1F1:-1.0574304188;TFAP4:-1.05945828406;MAFB:-1.05979860937;NKX2-1,4:-1.06799278697;GFI1B:-1.07202974465;PRDM1:-1.0785146347;NFE2L1:-1.08347923675;ZNF384:-1.09271843507;FOX{I1,J2}:-1.1022475061;PAX6:-1.14364054218;SPZ1:-1.1457298066;EP300:-1.1475564127;MZF1:-1.21280396701;PRRX1,2:-1.26983335219;NFATC1..3:-1.28640399381;NANOG:-1.32158074644;TGIF1:-1.41415422759;ZNF238:-1.44425329126;TEF:-1.53566371064;HBP1_HMGB_SSRP1_UBTF:-1.60651166154;GZF1:-1.66471205192;TLX2:-1.74346414584;SMAD1..7,9:-1.77536123114;HIF1A:-1.79732203238;FOXL1:-1.93984636463;HMX1:-1.94158043128
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10820-111C1;search_select_hide=table117:FF:10820-111C1
}}
}}

Latest revision as of 15:07, 3 June 2020

Name:hepatocellular carcinoma cell line: HepG2 ENCODE, biol_rep3
Species:Human (Homo sapiens)
Library ID:CNhs12330
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueliver
dev stageNA
sexmale
age15
cell typehepatocyte
cell lineHepG2
companyNA
collaborationCarrie Davis (Cold spring Harbor Laboratories)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005359
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12330 CAGE DRX007907 DRR008779
Accession ID Hg19

Library idBAMCTSS
CNhs12330 DRZ000204 DRZ001589
Accession ID Hg38

Library idBAMCTSS
CNhs12330 DRZ011554 DRZ012939
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.182
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.584
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0.241
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.00483
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.996
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.0162
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.242
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.0802
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0.187
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.0492
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0.0549
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0.0283
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.387
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast1.016921e-5
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0.407
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.541
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.108
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.0283
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0.0283
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0.714
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.273
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12330

Jaspar motifP-value
MA0002.20.00862
MA0003.10.678
MA0004.10.0891
MA0006.10.563
MA0007.10.509
MA0009.10.579
MA0014.10.233
MA0017.11.70249e-25
MA0018.20.0919
MA0019.10.718
MA0024.11.39105e-6
MA0025.10.621
MA0027.10.462
MA0028.11.50789e-5
MA0029.10.00535
MA0030.10.413
MA0031.10.0374
MA0035.20.0165
MA0038.10.0879
MA0039.20.0928
MA0040.10.34
MA0041.10.505
MA0042.10.296
MA0043.10.577
MA0046.13.32252e-78
MA0047.27.88276e-5
MA0048.10.0205
MA0050.10.176
MA0051.10.126
MA0052.10.0117
MA0055.13.04375e-5
MA0057.10.958
MA0058.10.0227
MA0059.10.0603
MA0060.11.74215e-16
MA0061.19.89567e-4
MA0062.25.28841e-5
MA0065.26.58169e-9
MA0066.10.657
MA0067.10.00379
MA0068.10.523
MA0069.10.701
MA0070.10.317
MA0071.10.307
MA0072.10.327
MA0073.10.625
MA0074.10.58
MA0076.19.29702e-6
MA0077.10.0663
MA0078.10.518
MA0079.20.637
MA0080.28.10309e-9
MA0081.10.138
MA0083.10.0333
MA0084.10.409
MA0087.10.328
MA0088.10.0704
MA0090.10.945
MA0091.10.055
MA0092.10.0658
MA0093.10.0425
MA0099.21.53766e-9
MA0100.10.0989
MA0101.10.136
MA0102.20.296
MA0103.10.0402
MA0104.20.00973
MA0105.10.00457
MA0106.10.0168
MA0107.10.011
MA0108.20.0687
MA0111.10.685
MA0112.20.761
MA0113.10.971
MA0114.12.22196e-35
MA0115.11.7495e-8
MA0116.10.568
MA0117.10.356
MA0119.10.0877
MA0122.10.284
MA0124.10.419
MA0125.10.29
MA0131.10.153
MA0135.10.463
MA0136.11.35167e-4
MA0137.20.303
MA0138.20.463
MA0139.10.00806
MA0140.10.0131
MA0141.11.12636e-4
MA0142.10.936
MA0143.10.866
MA0144.10.211
MA0145.10.182
MA0146.10.00332
MA0147.10.0126
MA0148.11.71258e-4
MA0149.10.305
MA0150.10.00788
MA0152.10.223
MA0153.11.86112e-49
MA0154.10.308
MA0155.10.942
MA0156.10.0241
MA0157.10.25
MA0159.10.214
MA0160.10.0133
MA0162.10.901
MA0163.10.0514
MA0164.10.346
MA0258.10.652
MA0259.10.037



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12330

Novel motifP-value
10.392
100.605
1000.0273
1010.554
1020.121
1030.762
1040.648
1050.911
1060.0115
1070.527
1080.494
1090.0871
110.712
1100.884
1110.795
1120.185
1130.0641
1140.435
1150.664
1160.889
1170.119
1180.262
1190.837
120.55
1200.477
1210.616
1220.948
1230.64
1240.225
1250.486
1260.491
1270.389
1280.0253
1290.952
137.21401e-5
1300.802
1310.0336
1320.545
1330.0116
1340.438
1350.0649
1360.0153
1370.00473
1380.426
1390.237
140.0665
1400.607
1410.223
1420.729
1430.153
1440.472
1450.897
1460.926
1470.523
1480.759
1490.645
150.977
1500.502
1510.706
1520.914
1530.425
1540.152
1550.298
1560.926
1570.698
1580.949
1590.6
160.693
1600.771
1610.878
1620.92
1630.656
1640.85
1650.679
1660.338
1670.781
1680.234
1690.3
170.727
180.0521
190.839
20.1
200.21
210.455
220.521
230.00286
240.999
250.625
260.0751
270.235
280.871
290.203
30.877
300.736
310.817
320.17
330.321
340.487
350.981
360.137
370.714
380.733
390.873
40.876
400.00794
410.0544
420.294
430.907
440.222
450.996
460.628
470.289
480.515
490.867
50.346
500.178
510.712
520.403
530.498
540.838
550.331
560.8
570.941
580.705
590.536
60.352
600.258
610.117
620.233
630.919
640.856
650.0553
660.00842
670.318
680.148
690.459
70.0306
700.13
710.462
720.0864
730.153
740.0631
758.31018e-4
760.657
770.978
780.015
790.0183
80.918
800.033
810.137
820.078
830.0907
840.11
850.0463
860.894
870.0725
880.482
890.57
90.0589
900.451
910.0114
920.0712
930.986
940.0673
950.0029
960.295
970.625
980.689
990.202



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12330


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000181 (metabolising cell)
0000417 (endopolyploid cell)
0000668 (parenchymal cell)
0000412 (polyploid cell)
0000255 (eukaryotic cell)
0000182 (hepatocyte)

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
7 (disease of anatomical entity)
305 (carcinoma)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002107 (liver)
0002100 (trunk)
0001007 (digestive system)
0004119 (endoderm-derived structure)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009569 (subdivision of trunk)
0002368 (endocrine gland)
0005177 (trunk region element)
0002365 (exocrine gland)
0005172 (abdomen element)
0006925 (digestive gland)
0002530 (gland)
0010317 (germ layer / neural crest derived structure)
0005173 (abdominal segment element)
0002417 (abdominal segment of trunk)
0000949 (endocrine system)
0002330 (exocrine system)
0000916 (abdomen)
0002423 (hepatobiliary system)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0100224 (liver cell line sample)
0100578 (hepatoma cell line sample)
0100599 (Hep-G2 cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
CL:0000223 (endodermal cell)
UBERON:0001041 (foregut)
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0003104 (mesenchyme)
UBERON:0004161 (septum transversum)
UBERON:0009497 (epithelium of foregut-midgut junction)
UBERON:0010316 (germ layer / neural crest)

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