Personal tools

FF:11513-119H1: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(3 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005939
|DRA_sample_Accession=CAGE@SAMD00005939
|accession_numbers=CAGE;DRX008504;DRR009376;DRZ000801;DRZ002186
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005939
|accession_numbers=CAGE;DRX008504;DRR009376;DRZ000801;DRZ002186;DRZ012151;DRZ013536
|accession_numbers_RNASeq=sRNA-Seq;DRX037211;DRR041577;DRZ007219
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0003126,UBERON:0002100,UBERON:0000064,UBERON:0004119,UBERON:0000466,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003103,UBERON:0009569,UBERON:0005178,UBERON:0000072,UBERON:0005177,UBERON:0000464,UBERON:0001005,UBERON:0005181,UBERON:0010317,UBERON:0007196,UBERON:0000065,UBERON:0001558,UBERON:0001004,UBERON:0002224,UBERON:0000915
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0003126,UBERON:0002100,UBERON:0000064,UBERON:0004119,UBERON:0000466,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003103,UBERON:0009569,UBERON:0005178,UBERON:0000072,UBERON:0005177,UBERON:0000464,UBERON:0001005,UBERON:0005181,UBERON:0010317,UBERON:0007196,UBERON:0000065,UBERON:0001558,UBERON:0001004,UBERON:0002224,UBERON:0000915
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0002600
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0002600
Line 54: Line 56:
|microRNAs=
|microRNAs=
|microRNAs_nn=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#cage;sample;11513
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11513
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10013.TAGCTT.11513
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10013.TAGCTT.11513
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#cage;sample;11513
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11513
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10013.TAGCTT.11513
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10013.TAGCTT.11513
|name=Smooth Muscle Cells - Tracheal, donor1
|name=Smooth Muscle Cells - Tracheal, donor1
Line 65: Line 67:
|profile_rnaseq=
|profile_rnaseq=
|profile_srnaseq=SRhi10013,,,
|profile_srnaseq=SRhi10013,,,
|refex=http://refex.dbcls.jp/genelist.php?lang=en&db=human&roku_valid=1&rk[]=&order_key=score
|refex=http://refex.dbcls.jp/genelist.php?lang
|repeat_enrich_byfamily=0,0,0,0,0,0,0,0.0380023575792621,0,0.515658115329287,-0.282403560576942,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0449973773172206,0,0,0,0,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,0.160902404804953,0,0,0,0,0,0,0,0,0.142765520946319,0,0,0,0.437167932714935,0,0.020848220902112,0,-0.0969923612426051,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0435952424767612,0.099160193832824,0,0,0.110316050696387,0.185312721065532,0,0,0,0,-0.0980353512377064,-0.138477200800895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.00278659991036313,0,0,0,0.414430138349403,0.885958673194241,0,0,0,0,0,0
|repeat_enrich_byfamily=0,0,0,0,0,0,0,0.0380023575792621,0,0.515658115329287,-0.282403560576942,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0449973773172206,0,0,0,0,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,0.160902404804953,0,0,0,0,0,0,0,0,0.142765520946319,0,0,0,0.437167932714935,0,0.020848220902112,0,-0.0969923612426051,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0435952424767612,0.099160193832824,0,0,0.110316050696387,0.185312721065532,0,0,0,0,-0.0980353512377064,-0.138477200800895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.00278659991036313,0,0,0,0.414430138349403,0.885958673194241,0,0,0,0,0,0
|repeat_enrich_byname=0,0,0,0,-0.0980353512377064,0,0,0,0,0,0,0.198320387665648,0,0,0,0,-0.247178875285564,0,-0.474086218752008,-0.143515142523472,0,0,0.0932178264891885,0,0,0,0,0,0,0,0,0,0.30904806576237,0,-0.0504125515893149,0,0,0,0,-0.0186252810838506,-0.305472230898407,0,0.0443259052079576,-0.0683442610773682,0,0,0,0,0.315290400241569,0,0.0774409038719076,0.115600219342231,0,0.301745342530085,-0.055712496781182,0,0,0,0.022499502138296,0.081146717179534,0,0,-0.121779851751874,-0.181349618560659,0,0,0.620120072277326,0,0.348669344018805,0.476704214372995,0,-0.266611031970456,0,0,0,0,0,0,0,0,0,0,0,0.505997198999118,-0.326988596678969,0,0,0,0,0.0343456024834501,0,0,0.705776915191379,0.376584306171363,0.033773654425026,-0.403698267248041,0,-0.104069339344265,0.045188225022937,-0.234341237052309,0.200989762411246,0.556012381437048,0.14397936456846,0.198320387665648,0.343483219176603,-0.0357484769767719,-0.0211382065149305,0.134377004616558,0.0147821667452266,0.502970012545827,0.0266132161429944,0,0,0.088051212543481,-0.327975854522495,0,0,0.0303821989219852,-0.00206157468360535,0.348185567839623,0.186248813824464,0.073792496511037,-0.195083181061015,0.933630513889034,0.473211163215143,0.00543461650031165,0.280300544382101,0,0,-0.087969206950705,0.0808697293531183,0.369783282968251,0.0347390525743496,0,-0.483977461810981,0.12997612658828,0,0.074098154788991,0.131354658162627,0,0,0.0116050728869818,0,0,0,0,0.198320387665648,0.250576271346752,0.0508901607282274,-0.0345351738898966,0,0.082822171555196,-0.0934186478268139,-0.0989656926869385,0,-0.14053044258994,0.136759084339237,0,0.121122669884214,0,0.195061337688341,-0.259493936233179,0.176675603451916,0.370625442131064,-0.0584468268118252,-0.396510849657424,0.0421435003869142,0.110316050696387,0.00408038273257472,0,1.45777077678593,0,-0.363047837119621,0.0710260205157155,0,0.145292754421355,0,-0.528383710046849,0,-0.671667680373866,0,0.105982485851671,-0.0199368380744813,-0.240968986915038,-0.320085174915432,0,0.114588065095053,0.0435952424767612,0,0.0625972438188662,0,0,0.370129830064119,0.0953242810102186,-0.112490234031765,-0.138989456679195,0,0.169097584797453,0,0,0.29883937576451,-0.235476037764389,0,0.392367266733991,0.290907736244722,-0.0138337374369009,0.217990010683373,0,0,0.340248278525817,0,0,0.45166043883654,0.499044163120432,-0.285822239840326,0.183841591228179,0.0548778680449055,0.058357732604898,0,0,-0.177527765965176,0,0.134730479261157,0,0,0.174561510110515,0.217332971128174,0,0,0.198320387665648,0,0,0,0,0,0,0,0,-0.43111580516447,-0.1565129425508,0,0.130678572692836,0,0,0,0.590382303758394,0,0,0,0,-0.253159359545267,-0.00346869298901042,-0.12301741567642,0.099160193832824,0,0,0,-0.215723402553475,-0.203236562094724,0,-0.131862706497632,0,0,0,0,-0.0861409897892114,0,0,0,0,0.140589930611984,0.520087710636705,0,0,0,-0.27695440160179,0,0,0,0,-0.323481462534196,0,0,0,0,0.239247074362296,0.355586053168093,0,0.124809657334417,0.473909751004446,0.0733151615722,0,0,0.0726139523284194,0,0,-0.445562017874854,0,0,0,0,0,0,0,0,0,-0.214314512399756,0,0,0,0,0,0,0,0,0,0,0,0.137708967422083,-0.0922240566585104,0,0,0,0,0,0,0,-0.0241060230789031,0.0483441882595199,0,0,0,0,0,0,0,0,-0.471425939663242,0,0,0,0,0,-0.0969923612426051,0,0,0,0,-0.564807121153884,0,0,0.515658115329287,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.123319086035448,0.877291775829984,0,0,0,0,0,0,0,-0.27483329820609,0,0,0,0,0.084436013956671,0,0,0,-0.104796384789156,0,0.0380023575792621,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.641117068656726,0,0.145431719216514,-0.0284865735645812,0,0,0.0926542602434725,0,0,0,0,0,0,-0.031340424028527,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0962259712900034,0,0,0,0,0,0,0,-0.0979578962680575,0,0,-0.0920328098005262,0,0,0,0,0,0,0.0297673195335819,0.259022218304626,0.0661801956932786,0,0,0,0.164198393875013,0.437167932714935,0,0.0709595996913777,0,0.131543000246747,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0449973773172206,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0340113632754165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0800184682686384,0,0,0,-0.0147658419913955,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.553748876236715,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0482220752390542,0,0.436120281168732,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.550504042515712,0,0,0,0,-0.0476371106609188,0,0,0,0,0,0,0.333961084118307,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.253610608288505,0,0,0.144143215215396,0,0,0,0,0,0,0,0,0,0,0,0,0.137000208515522,0,0,0,0,0,0,0,0,0,0,0.285531041892638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436326304151515,0.885958673194241,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.354724076107398,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0296969223726757,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211329761501131,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.00557319982072627,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.099160193832824,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.13795473759269,0,0,0,0,0,0,0,-0.122695996997001,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0237397835175619,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0317165860483832,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.295191151879197,0,0,0,-0.0797419986649781,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383693524250144,0,0,0,0,0,0,0,0,0,0,-0.0412500915278073,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0521969768124078,0,0,0.156032919188532,0,0.430664049154794,0,0,0,0,0,0,0.099160193832824,0,0,0,0,0,0,0,0,0,0,-0.0400762477245316,0,0,-0.137338502423895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.280072095322966,0,-0.113698987088168,-0.397074688522015,0,0,0.046886532903163,0,0,-0.0477396614475454,0,0,-0.174992895090299,-0.53275641074166,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0568589461625992,-0.071155247928921,0,0.0583316783645108,0,0,0.225460623637798,0,0.099160193832824,0,0.424537506025172
|repeat_enrich_byname=0,0,0,0,-0.0980353512377064,0,0,0,0,0,0,0.198320387665648,0,0,0,0,-0.247178875285564,0,-0.474086218752008,-0.143515142523472,0,0,0.0932178264891885,0,0,0,0,0,0,0,0,0,0.30904806576237,0,-0.0504125515893149,0,0,0,0,-0.0186252810838506,-0.305472230898407,0,0.0443259052079576,-0.0683442610773682,0,0,0,0,0.315290400241569,0,0.0774409038719076,0.115600219342231,0,0.301745342530085,-0.055712496781182,0,0,0,0.022499502138296,0.081146717179534,0,0,-0.121779851751874,-0.181349618560659,0,0,0.620120072277326,0,0.348669344018805,0.476704214372995,0,-0.266611031970456,0,0,0,0,0,0,0,0,0,0,0,0.505997198999118,-0.326988596678969,0,0,0,0,0.0343456024834501,0,0,0.705776915191379,0.376584306171363,0.033773654425026,-0.403698267248041,0,-0.104069339344265,0.045188225022937,-0.234341237052309,0.200989762411246,0.556012381437048,0.14397936456846,0.198320387665648,0.343483219176603,-0.0357484769767719,-0.0211382065149305,0.134377004616558,0.0147821667452266,0.502970012545827,0.0266132161429944,0,0,0.088051212543481,-0.327975854522495,0,0,0.0303821989219852,-0.00206157468360535,0.348185567839623,0.186248813824464,0.073792496511037,-0.195083181061015,0.933630513889034,0.473211163215143,0.00543461650031165,0.280300544382101,0,0,-0.087969206950705,0.0808697293531183,0.369783282968251,0.0347390525743496,0,-0.483977461810981,0.12997612658828,0,0.074098154788991,0.131354658162627,0,0,0.0116050728869818,0,0,0,0,0.198320387665648,0.250576271346752,0.0508901607282274,-0.0345351738898966,0,0.082822171555196,-0.0934186478268139,-0.0989656926869385,0,-0.14053044258994,0.136759084339237,0,0.121122669884214,0,0.195061337688341,-0.259493936233179,0.176675603451916,0.370625442131064,-0.0584468268118252,-0.396510849657424,0.0421435003869142,0.110316050696387,0.00408038273257472,0,1.45777077678593,0,-0.363047837119621,0.0710260205157155,0,0.145292754421355,0,-0.528383710046849,0,-0.671667680373866,0,0.105982485851671,-0.0199368380744813,-0.240968986915038,-0.320085174915432,0,0.114588065095053,0.0435952424767612,0,0.0625972438188662,0,0,0.370129830064119,0.0953242810102186,-0.112490234031765,-0.138989456679195,0,0.169097584797453,0,0,0.29883937576451,-0.235476037764389,0,0.392367266733991,0.290907736244722,-0.0138337374369009,0.217990010683373,0,0,0.340248278525817,0,0,0.45166043883654,0.499044163120432,-0.285822239840326,0.183841591228179,0.0548778680449055,0.058357732604898,0,0,-0.177527765965176,0,0.134730479261157,0,0,0.174561510110515,0.217332971128174,0,0,0.198320387665648,0,0,0,0,0,0,0,0,-0.43111580516447,-0.1565129425508,0,0.130678572692836,0,0,0,0.590382303758394,0,0,0,0,-0.253159359545267,-0.00346869298901042,-0.12301741567642,0.099160193832824,0,0,0,-0.215723402553475,-0.203236562094724,0,-0.131862706497632,0,0,0,0,-0.0861409897892114,0,0,0,0,0.140589930611984,0.520087710636705,0,0,0,-0.27695440160179,0,0,0,0,-0.323481462534196,0,0,0,0,0.239247074362296,0.355586053168093,0,0.124809657334417,0.473909751004446,0.0733151615722,0,0,0.0726139523284194,0,0,-0.445562017874854,0,0,0,0,0,0,0,0,0,-0.214314512399756,0,0,0,0,0,0,0,0,0,0,0,0.137708967422083,-0.0922240566585104,0,0,0,0,0,0,0,-0.0241060230789031,0.0483441882595199,0,0,0,0,0,0,0,0,-0.471425939663242,0,0,0,0,0,-0.0969923612426051,0,0,0,0,-0.564807121153884,0,0,0.515658115329287,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.123319086035448,0.877291775829984,0,0,0,0,0,0,0,-0.27483329820609,0,0,0,0,0.084436013956671,0,0,0,-0.104796384789156,0,0.0380023575792621,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.641117068656726,0,0.145431719216514,-0.0284865735645812,0,0,0.0926542602434725,0,0,0,0,0,0,-0.031340424028527,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0962259712900034,0,0,0,0,0,0,0,-0.0979578962680575,0,0,-0.0920328098005262,0,0,0,0,0,0,0.0297673195335819,0.259022218304626,0.0661801956932786,0,0,0,0.164198393875013,0.437167932714935,0,0.0709595996913777,0,0.131543000246747,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0449973773172206,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0340113632754165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0800184682686384,0,0,0,-0.0147658419913955,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.553748876236715,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0482220752390542,0,0.436120281168732,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.550504042515712,0,0,0,0,-0.0476371106609188,0,0,0,0,0,0,0.333961084118307,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.253610608288505,0,0,0.144143215215396,0,0,0,0,0,0,0,0,0,0,0,0,0.137000208515522,0,0,0,0,0,0,0,0,0,0,0.285531041892638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436326304151515,0.885958673194241,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.354724076107398,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0296969223726757,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211329761501131,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.00557319982072627,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.099160193832824,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.13795473759269,0,0,0,0,0,0,0,-0.122695996997001,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0237397835175619,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0317165860483832,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.295191151879197,0,0,0,-0.0797419986649781,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383693524250144,0,0,0,0,0,0,0,0,0,0,-0.0412500915278073,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0521969768124078,0,0,0.156032919188532,0,0.430664049154794,0,0,0,0,0,0,0.099160193832824,0,0,0,0,0,0,0,0,0,0,-0.0400762477245316,0,0,-0.137338502423895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.280072095322966,0,-0.113698987088168,-0.397074688522015,0,0,0.046886532903163,0,0,-0.0477396614475454,0,0,-0.174992895090299,-0.53275641074166,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0568589461625992,-0.071155247928921,0,0.0583316783645108,0,0,0.225460623637798,0,0.099160193832824,0,0.424537506025172
Line 80: Line 82:
|rna_tube_id=119H1
|rna_tube_id=119H1
|rna_weight_ug=10
|rna_weight_ug=10
|rnaseq_library_id=SRhi10013.TAGCTT
|sample_age=
|sample_age=
|sample_category=primary cells
|sample_category=primary cells
Line 103: Line 106:
|top_motifs=GZF1:2.26092493782;TAL1_TCF{3,4,12}:2.08290887127;ZNF423:1.83865349586;ZNF238:1.7996797213;EBF1:1.68754830102;TFCP2:1.5320267943;NR5A1,2:1.39344408404;GTF2A1,2:1.37837685952;HOX{A5,B5}:1.33848269463;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.26909481932;TFAP4:1.18586873506;GLI1..3:1.16471966674;TP53:1.10710997519;ESRRA:1.04557396642;RXR{A,B,G}:1.04539483853;HES1:1.03542532519;ESR1:1.03241489929;DBP:1.02982467119;RXRA_VDR{dimer}:1.02043973943;STAT5{A,B}:1.01025714083;LHX3,4:0.896095056706;ZBTB6:0.884119593162;SRF:0.858974527823;bHLH_family:0.83322308646;TLX1..3_NFIC{dimer}:0.78761725404;GFI1B:0.776268611104;TBX4,5:0.756906531498;ZNF148:0.749054821914;EN1,2:0.714684776013;TFAP2{A,C}:0.705117742697;HOXA9_MEIS1:0.672209235707;ZIC1..3:0.616745167913;LMO2:0.597883000366;NR1H4:0.56738433371;PAX1,9:0.55422989665;HAND1,2:0.534911008576;HMX1:0.504764833838;IKZF1:0.495309065159;GTF2I:0.453507561088;HNF4A_NR2F1,2:0.437903583442;ALX4:0.436590119153;TEAD1:0.423282400909;SMAD1..7,9:0.3735270736;TOPORS:0.370895761612;TBP:0.370861481342;NKX2-2,8:0.354837815773;UFEwm:0.347389330128;NFE2L1:0.347179802338;KLF4:0.338438471359;NFE2L2:0.332027418169;TEF:0.315192859616;HOX{A6,A7,B6,B7}:0.305336278625;REST:0.294603743104;RREB1:0.287474572803;NR3C1:0.264773148195;NANOG:0.263864698464;ATF6:0.260790989957;HIC1:0.260389673821;MAFB:0.259351232087;AR:0.253272595318;MTF1:0.247041345188;STAT2,4,6:0.246753549215;LEF1_TCF7_TCF7L1,2:0.245939474515;NFIX:0.243068482517;PAX5:0.237475767575;POU3F1..4:0.195277806639;BACH2:0.179769686105;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.161795164993;HNF1A:0.120084146301;XCPE1{core}:0.119334866388;SPZ1:0.101331032304;NKX3-2:0.0737041879383;HLF:0.0545017159189;MYBL2:0.0512721307037;ONECUT1,2:0.0415304593282;NR6A1:0.0345884387824;T:0.0336318409925;NFE2:0.0316824886194;GCM1,2:0.0011656988254;SP1:-0.0137011536018;NKX2-3_NKX2-5:-0.0171096175571;FOS_FOS{B,L1}_JUN{B,D}:-0.0231770948237;PATZ1:-0.024152300102;MYFfamily:-0.0285866470231;PPARG:-0.0310938246125;NKX6-1,2:-0.0318868833245;NFIL3:-0.0414272076733;NHLH1,2:-0.0781207004418;SOX17:-0.0856936001378;YY1:-0.0957610988583;FOXM1:-0.097671630743;PBX1:-0.146120669066;NANOG{mouse}:-0.186238023608;TFAP2B:-0.186244918396;EP300:-0.191719167856;CEBPA,B_DDIT3:-0.192435861886;RFX1:-0.199951426015;SNAI1..3:-0.221276455444;PRRX1,2:-0.226585787811;RORA:-0.230688791906;RUNX1..3:-0.231917415042;XBP1:-0.238979255202;MEF2{A,B,C,D}:-0.262094178974;HOX{A4,D4}:-0.262494451692;JUN:-0.267758466468;FOSL2:-0.27286356968;POU6F1:-0.279656946948;MYOD1:-0.316342118146;RFX2..5_RFXANK_RFXAP:-0.330583425084;MZF1:-0.332961301435;GFI1:-0.338091255883;NFKB1_REL_RELA:-0.350464018392;HIF1A:-0.360351797171;NFATC1..3:-0.372047452276;HSF1,2:-0.391632857559;MAZ:-0.39959585302;CRX:-0.401293485477;MED-1{core}:-0.41056640452;TLX2:-0.420828367143;FOXQ1:-0.430694862515;CDC5L:-0.444385370108;ETS1,2:-0.446173687329;NKX2-1,4:-0.44627857426;SREBF1,2:-0.449899810342;DMAP1_NCOR{1,2}_SMARC:-0.451825794946;GATA6:-0.461216341296;MTE{core}:-0.468557861844;FOXL1:-0.481287221494;FOX{D1,D2}:-0.487960019818;SPIB:-0.488297651216;GATA4:-0.501851447924;PAX4:-0.519056065526;EGR1..3:-0.532106535861;PDX1:-0.538901402101;POU2F1..3:-0.539031131314;POU5F1:-0.539226775569;PRDM1:-0.549357433482;ARID5B:-0.551618622719;EVI1:-0.564677439819;CUX2:-0.579009651362;ZNF143:-0.585138205103;ADNP_IRX_SIX_ZHX:-0.58615259436;PAX2:-0.607839517341;ZNF384:-0.613206794784;TGIF1:-0.615649933727;MYB:-0.624772706396;FOX{F1,F2,J1}:-0.636983070133;SOX5:-0.658615652845;AHR_ARNT_ARNT2:-0.667446633578;PITX1..3:-0.669332957002;NKX3-1:-0.689685417431;FOXO1,3,4:-0.734312942485;AIRE:-0.752488742418;VSX1,2:-0.768876347371;IRF1,2:-0.779142652877;ZEB1:-0.785315777842;SPI1:-0.830042601574;FOXP3:-0.83318704864;STAT1,3:-0.835003888415;POU1F1:-0.837350098723;HMGA1,2:-0.844111137752;OCT4_SOX2{dimer}:-0.846610057977;SOX{8,9,10}:-0.868827121931;NRF1:-0.879383214757;NFY{A,B,C}:-0.884222515489;PAX6:-0.908943875325;PAX8:-0.9177134215;FOXA2:-0.919195013337;PAX3,7:-0.94278932329;ALX1:-0.952470247649;E2F1..5:-0.954273168777;ZFP161:-0.976353677953;TFDP1:-1.02284867019;FOXD3:-1.03657440482;ATF2:-1.06491774802;IRF7:-1.07083070876;SOX2:-1.08636142769;FOX{I1,J2}:-1.10277747098;ATF5_CREB3:-1.10329403943;ELK1,4_GABP{A,B1}:-1.17263827396;BREu{core}:-1.17280419691;CREB1:-1.2049670656;FOXP1:-1.2351280357;CDX1,2,4:-1.23850639898;ATF4:-1.26071383466;ELF1,2,4:-1.40590239557;HBP1_HMGB_SSRP1_UBTF:-1.4587994964;IKZF2:-1.51521566839;BPTF:-1.54200291232;ZBTB16:-1.55753103332;FOXN1:-1.79264432809;RBPJ:-2.08506895114
|top_motifs=GZF1:2.26092493782;TAL1_TCF{3,4,12}:2.08290887127;ZNF423:1.83865349586;ZNF238:1.7996797213;EBF1:1.68754830102;TFCP2:1.5320267943;NR5A1,2:1.39344408404;GTF2A1,2:1.37837685952;HOX{A5,B5}:1.33848269463;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.26909481932;TFAP4:1.18586873506;GLI1..3:1.16471966674;TP53:1.10710997519;ESRRA:1.04557396642;RXR{A,B,G}:1.04539483853;HES1:1.03542532519;ESR1:1.03241489929;DBP:1.02982467119;RXRA_VDR{dimer}:1.02043973943;STAT5{A,B}:1.01025714083;LHX3,4:0.896095056706;ZBTB6:0.884119593162;SRF:0.858974527823;bHLH_family:0.83322308646;TLX1..3_NFIC{dimer}:0.78761725404;GFI1B:0.776268611104;TBX4,5:0.756906531498;ZNF148:0.749054821914;EN1,2:0.714684776013;TFAP2{A,C}:0.705117742697;HOXA9_MEIS1:0.672209235707;ZIC1..3:0.616745167913;LMO2:0.597883000366;NR1H4:0.56738433371;PAX1,9:0.55422989665;HAND1,2:0.534911008576;HMX1:0.504764833838;IKZF1:0.495309065159;GTF2I:0.453507561088;HNF4A_NR2F1,2:0.437903583442;ALX4:0.436590119153;TEAD1:0.423282400909;SMAD1..7,9:0.3735270736;TOPORS:0.370895761612;TBP:0.370861481342;NKX2-2,8:0.354837815773;UFEwm:0.347389330128;NFE2L1:0.347179802338;KLF4:0.338438471359;NFE2L2:0.332027418169;TEF:0.315192859616;HOX{A6,A7,B6,B7}:0.305336278625;REST:0.294603743104;RREB1:0.287474572803;NR3C1:0.264773148195;NANOG:0.263864698464;ATF6:0.260790989957;HIC1:0.260389673821;MAFB:0.259351232087;AR:0.253272595318;MTF1:0.247041345188;STAT2,4,6:0.246753549215;LEF1_TCF7_TCF7L1,2:0.245939474515;NFIX:0.243068482517;PAX5:0.237475767575;POU3F1..4:0.195277806639;BACH2:0.179769686105;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.161795164993;HNF1A:0.120084146301;XCPE1{core}:0.119334866388;SPZ1:0.101331032304;NKX3-2:0.0737041879383;HLF:0.0545017159189;MYBL2:0.0512721307037;ONECUT1,2:0.0415304593282;NR6A1:0.0345884387824;T:0.0336318409925;NFE2:0.0316824886194;GCM1,2:0.0011656988254;SP1:-0.0137011536018;NKX2-3_NKX2-5:-0.0171096175571;FOS_FOS{B,L1}_JUN{B,D}:-0.0231770948237;PATZ1:-0.024152300102;MYFfamily:-0.0285866470231;PPARG:-0.0310938246125;NKX6-1,2:-0.0318868833245;NFIL3:-0.0414272076733;NHLH1,2:-0.0781207004418;SOX17:-0.0856936001378;YY1:-0.0957610988583;FOXM1:-0.097671630743;PBX1:-0.146120669066;NANOG{mouse}:-0.186238023608;TFAP2B:-0.186244918396;EP300:-0.191719167856;CEBPA,B_DDIT3:-0.192435861886;RFX1:-0.199951426015;SNAI1..3:-0.221276455444;PRRX1,2:-0.226585787811;RORA:-0.230688791906;RUNX1..3:-0.231917415042;XBP1:-0.238979255202;MEF2{A,B,C,D}:-0.262094178974;HOX{A4,D4}:-0.262494451692;JUN:-0.267758466468;FOSL2:-0.27286356968;POU6F1:-0.279656946948;MYOD1:-0.316342118146;RFX2..5_RFXANK_RFXAP:-0.330583425084;MZF1:-0.332961301435;GFI1:-0.338091255883;NFKB1_REL_RELA:-0.350464018392;HIF1A:-0.360351797171;NFATC1..3:-0.372047452276;HSF1,2:-0.391632857559;MAZ:-0.39959585302;CRX:-0.401293485477;MED-1{core}:-0.41056640452;TLX2:-0.420828367143;FOXQ1:-0.430694862515;CDC5L:-0.444385370108;ETS1,2:-0.446173687329;NKX2-1,4:-0.44627857426;SREBF1,2:-0.449899810342;DMAP1_NCOR{1,2}_SMARC:-0.451825794946;GATA6:-0.461216341296;MTE{core}:-0.468557861844;FOXL1:-0.481287221494;FOX{D1,D2}:-0.487960019818;SPIB:-0.488297651216;GATA4:-0.501851447924;PAX4:-0.519056065526;EGR1..3:-0.532106535861;PDX1:-0.538901402101;POU2F1..3:-0.539031131314;POU5F1:-0.539226775569;PRDM1:-0.549357433482;ARID5B:-0.551618622719;EVI1:-0.564677439819;CUX2:-0.579009651362;ZNF143:-0.585138205103;ADNP_IRX_SIX_ZHX:-0.58615259436;PAX2:-0.607839517341;ZNF384:-0.613206794784;TGIF1:-0.615649933727;MYB:-0.624772706396;FOX{F1,F2,J1}:-0.636983070133;SOX5:-0.658615652845;AHR_ARNT_ARNT2:-0.667446633578;PITX1..3:-0.669332957002;NKX3-1:-0.689685417431;FOXO1,3,4:-0.734312942485;AIRE:-0.752488742418;VSX1,2:-0.768876347371;IRF1,2:-0.779142652877;ZEB1:-0.785315777842;SPI1:-0.830042601574;FOXP3:-0.83318704864;STAT1,3:-0.835003888415;POU1F1:-0.837350098723;HMGA1,2:-0.844111137752;OCT4_SOX2{dimer}:-0.846610057977;SOX{8,9,10}:-0.868827121931;NRF1:-0.879383214757;NFY{A,B,C}:-0.884222515489;PAX6:-0.908943875325;PAX8:-0.9177134215;FOXA2:-0.919195013337;PAX3,7:-0.94278932329;ALX1:-0.952470247649;E2F1..5:-0.954273168777;ZFP161:-0.976353677953;TFDP1:-1.02284867019;FOXD3:-1.03657440482;ATF2:-1.06491774802;IRF7:-1.07083070876;SOX2:-1.08636142769;FOX{I1,J2}:-1.10277747098;ATF5_CREB3:-1.10329403943;ELK1,4_GABP{A,B1}:-1.17263827396;BREu{core}:-1.17280419691;CREB1:-1.2049670656;FOXP1:-1.2351280357;CDX1,2,4:-1.23850639898;ATF4:-1.26071383466;ELF1,2,4:-1.40590239557;HBP1_HMGB_SSRP1_UBTF:-1.4587994964;IKZF2:-1.51521566839;BPTF:-1.54200291232;ZBTB16:-1.55753103332;FOXN1:-1.79264432809;RBPJ:-2.08506895114
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11513-119H1;search_select_hide=table117:FF:11513-119H1
}}
}}

Latest revision as of 18:05, 4 June 2020

Name:Smooth Muscle Cells - Tracheal, donor1
Species:Human (Homo sapiens)
Library ID:CNhs11329
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuelung
dev stageNA
sexNA
ageNA
cell typesmooth muscle cell
cell lineNA
companySciencell/3H
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberlot:572
catalog numberSC3415
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005939
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11329 CAGE DRX008504 DRR009376
Accession ID Hg19

Library idBAMCTSS
CNhs11329 DRZ000801 DRZ002186
Accession ID Hg38

Library idBAMCTSS
CNhs11329 DRZ012151 DRZ013536
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005939
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10013.TAGCTT sRNA-Seq DRX037211 DRR041577
Accession ID Hg19

Library idBAMCTSS
SRhi10013.TAGCTT DRZ007219


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.0357
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.344
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.0761
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.523
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.0371
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140.198
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.401
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.588
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.562
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.242
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.0608
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.198
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.334
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.52
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.52
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.52
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11329

Jaspar motifP-value
MA0002.20.12
MA0003.10.234
MA0004.10.473
MA0006.10.437
MA0007.10.0304
MA0009.10.404
MA0014.10.999
MA0017.10.0741
MA0018.25.83823e-5
MA0019.10.949
MA0024.14.25106e-4
MA0025.10.0113
MA0027.10.457
MA0028.10.0107
MA0029.10.515
MA0030.10.204
MA0031.10.222
MA0035.20.638
MA0038.10.0471
MA0039.20.844
MA0040.10.286
MA0041.10.283
MA0042.10.781
MA0043.12.6169e-4
MA0046.10.985
MA0047.20.935
MA0048.10.784
MA0050.11.23998e-5
MA0051.10.00458
MA0052.10.657
MA0055.10.595
MA0057.10.075
MA0058.10.465
MA0059.10.309
MA0060.10.00516
MA0061.10.616
MA0062.25.1456e-6
MA0065.20.00803
MA0066.10.0444
MA0067.10.0186
MA0068.10.22
MA0069.10.165
MA0070.10.495
MA0071.10.0259
MA0072.10.374
MA0073.10.948
MA0074.10.173
MA0076.10.00113
MA0077.10.719
MA0078.10.988
MA0079.20.841
MA0080.22.67259e-6
MA0081.10.0685
MA0083.13.31111e-4
MA0084.10.849
MA0087.10.747
MA0088.10.285
MA0090.10.0341
MA0091.10.00217
MA0092.10.149
MA0093.10.527
MA0099.20.00934
MA0100.10.386
MA0101.10.332
MA0102.20.0488
MA0103.10.455
MA0104.20.937
MA0105.10.143
MA0106.10.0221
MA0107.10.441
MA0108.20.177
MA0111.10.711
MA0112.26.76047e-4
MA0113.10.0574
MA0114.10.0655
MA0115.10.338
MA0116.10.113
MA0117.10.434
MA0119.10.0357
MA0122.10.778
MA0124.10.306
MA0125.10.912
MA0131.10.202
MA0135.10.142
MA0136.13.21363e-8
MA0137.20.0886
MA0138.20.0866
MA0139.10.605
MA0140.10.843
MA0141.10.0137
MA0142.10.629
MA0143.10.621
MA0144.10.878
MA0145.10.146
MA0146.10.0635
MA0147.10.751
MA0148.10.56
MA0149.10.366
MA0150.10.548
MA0152.10.333
MA0153.10.0561
MA0154.10.0929
MA0155.10.0915
MA0156.12.6739e-6
MA0157.10.951
MA0159.10.257
MA0160.10.137
MA0162.10.117
MA0163.10.0244
MA0164.10.514
MA0258.10.0169
MA0259.10.888



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11329

Novel motifP-value
10.255
100.713
1000.569
1010.782
1020.639
1030.174
1040.452
1050.366
1060.0435
1070.0499
1080.195
1090.115
110.0591
1100.134
1110.344
1120.329
1130.274
1140.131
1150.296
1160.129
1170.616
1180.592
1190.216
120.675
1200.528
1210.811
1220.886
1230.371
1240.148
1250.56
1260.556
1270.194
1280.0314
1290.513
130.497
1300.87
1310.949
1320.553
1330.861
1340.477
1350.123
1360.658
1370.226
1380.583
1390.117
140.885
1400.673
1410.644
1420.723
1430.0284
1440.457
1450.256
1460.537
1470.288
1480.232
1490.00767
150.432
1500.54
1510.344
1520.128
1530.646
1540.381
1550.56
1560.991
1570.433
1580.142
1590.531
160.0556
1600.0248
1610.672
1620.29
1630.814
1640.539
1650.929
1660.723
1670.396
1680.971
1690.0399
170.133
180.0843
190.0448
20.315
200.409
210.122
220.0793
230.127
240.192
250.904
260.0527
270.154
280.287
290.587
30.252
300.305
310.298
321.34589e-6
330.311
340.231
350.6
360.642
370.185
380.319
390.217
40.474
400.0569
410.5
420.54
430.135
440.415
450.403
460.0772
470.255
480.275
490.141
50.713
500.42
510.358
520.258
530.875
540.324
550.246
560.237
570.294
580.865
590.0293
60.982
600.264
610.505
620.631
630.162
640.167
650.0654
660.775
670.806
680.0349
690.0743
70.855
700.0233
710.0693
720.708
730.0804
740.948
750.418
760.758
770.0329
780.843
790.117
80.0172
800.688
810.315
820.169
830.3
840.391
850.057
860.872
870.289
880.266
890.0346
90.258
900.402
910.136
920.0461
930.559
940.164
950.397
960.443
970.517
980.117
990.00371



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11329


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000192 (smooth muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0002600 (smooth muscle cell of trachea)

UBERON: Anatomy
0000468 (multi-cellular organism)
0003126 (trachea)
0002100 (trunk)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000466 (immaterial anatomical entity)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003103 (compound organ)
0009569 (subdivision of trunk)
0005178 (thoracic cavity element)
0000072 (segment of respiratory tract)
0005177 (trunk region element)
0000464 (anatomical space)
0001005 (respiratory airway)
0005181 (thoracic segment organ)
0010317 (germ layer / neural crest derived structure)
0007196 (tracheobronchial tree)
0000065 (respiratory tract)
0001558 (lower respiratory tract)
0001004 (respiratory system)
0002224 (thoracic cavity)
0000915 (thoracic segment of trunk)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000167 (smooth muscle cell sample)
0000184 (human smooth muscle cell of trachea sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000514 (smooth muscle myoblast)

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=FF:11513-119H1&oldid=4576524"