FFCP PHASE1:Hg19::chr2:45169172..45169177,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr2:45169172..45169177,+ to FFCP PHASE1:Hg19::chr2:45169172..45169177,+: NSchange) |
No edit summary |
||
(10 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6496 | |EntrezGene=6496 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10889 | |HGNC=10889 | ||
|TSSclassifier=strong | |||
|UniProt=O95343 | |UniProt=O95343 | ||
|association_with_transcript=135bp_to_NM_005413,uc002run.1_5end | |||
|cluster_id=chr2:45169172..45169177,+ | |||
|coexpression_cluster_id=C573 | |||
|description=CAGE_peak_11_at_SIX3_5end | |||
|id=chr2:45169172..45169177,+ | |||
|ontology_enrichment_celltype=CL:0002586!1.46e-10!3;CL:0000064!1.76e-10!3;CL:0005012!1.76e-10!3;CL:0000067!1.76e-10!3;CL:0002304!1.76e-10!3;CL:0000149!5.36e-08!4;CL:0000306!7.19e-08!4;CL:0002222!7.19e-08!4;CL:0002224!7.19e-08!4 | |||
|ontology_enrichment_celltype_v019=CL:0002586;2.05e-43;3!CL:0000064;1.33e-42;3!CL:0000067;1.33e-42;3!CL:0005012;1.33e-42;3!CL:0002304;1.33e-42;3!CL:0000149;9.03e-33;4!CL:0000306;2.96e-15;4!CL:0002222;2.96e-15;4!CL:0002224;2.96e-15;4!CL:0000075;4.10e-13;27!CL:0000147;7.83e-10;14!CL:0000710;6.36e-07;20 | |||
|ontology_enrichment_celltype_v019_2=CL:0002586,2.95e-43,3;CL:0000064,7.00e-43,3;CL:0000067,7.00e-43,3;CL:0005012,7.00e-43,3;CL:0002304,7.00e-43,3;CL:0000149,1.18e-32,4;CL:0000306,3.18e-15,4;CL:0002222,3.18e-15,4;CL:0002224,3.18e-15,4;CL:0000075,3.74e-13,27;CL:0000147,8.44e-10,14;CL:0000710,5.80e-07,20 | |||
|ontology_enrichment_development_v019=UBERON:0010122;2.67e-08;2 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007625!1.57e-22!11;UBERON:0003056!1.71e-21!61;UBERON:0000970!8.66e-21!20;UBERON:0002104!1.19e-19!21;UBERON:0000019!2.13e-18!19;UBERON:0000047!2.13e-18!19;UBERON:0004088!2.13e-18!19;UBERON:0003072!2.13e-18!19;UBERON:0003071!2.13e-18!19;UBERON:0004128!2.13e-18!19;UBERON:0003075!1.08e-17!86;UBERON:0007284!1.08e-17!86;UBERON:0000020!1.13e-17!23;UBERON:0001032!8.23e-17!24;UBERON:0004456!8.23e-17!24;UBERON:0002346!1.34e-16!90;UBERON:0001456!2.18e-16!21;UBERON:0000966!2.40e-16!5;UBERON:0005388!2.40e-16!5;UBERON:0001802!2.40e-16!5;UBERON:0000073!1.77e-14!94;UBERON:0001016!1.77e-14!94;UBERON:0004121!1.23e-13!169;UBERON:0000033!3.22e-13!123;UBERON:0000924!4.07e-13!173;UBERON:0006601!4.07e-13!173;UBERON:0005743!1.66e-12!86;UBERON:0000153!2.89e-12!129;UBERON:0007811!2.89e-12!129;UBERON:0005085!3.90e-11!29;UBERON:0002420!4.15e-11!9;UBERON:0007245!4.15e-11!9;UBERON:0010009!4.15e-11!9;UBERON:0010011!4.15e-11!9;UBERON:0000454!4.15e-11!9;UBERON:0001781!1.46e-10!3;UBERON:0001782!1.46e-10!3;UBERON:0005424!1.46e-10!3;UBERON:0001778!1.76e-10!3;UBERON:0001775!1.76e-10!3;UBERON:0009663!2.54e-10!7;UBERON:0002780!2.15e-08!41;UBERON:0001890!2.15e-08!41;UBERON:0006240!2.15e-08!41;UBERON:0000955!2.58e-08!69;UBERON:0006238!2.58e-08!69;UBERON:0001017!2.65e-08!82;UBERON:0003080!3.90e-08!42;UBERON:0002616!4.50e-08!59;UBERON:0002308!6.06e-08!9;UBERON:0000125!6.06e-08!9;UBERON:0000488!6.14e-08!4;UBERON:0010077!7.19e-08!4;UBERON:0005389!7.19e-08!4;UBERON:0000484!7.19e-08!4;UBERON:0002546!7.19e-08!4;UBERON:0000965!7.19e-08!4;UBERON:0001803!7.19e-08!4;UBERON:0003073!7.19e-08!4;UBERON:0005426!7.19e-08!4;UBERON:0001801!1.01e-07!14;UBERON:0000369!1.26e-07!4;UBERON:0002435!1.26e-07!4;UBERON:0000204!1.26e-07!4;UBERON:0010082!1.26e-07!4;UBERON:0001444!7.49e-07!48;UBERON:0002200!9.83e-07!11;UBERON:0006876!9.83e-07!11 | |||
|ontology_enrichment_uberon_v019=UBERON:0007625;2.49e-81;11!UBERON:0000970;1.19e-69;20!UBERON:0002104;2.67e-66;21!UBERON:0000020;1.79e-60;23!UBERON:0000019;2.21e-59;19!UBERON:0000047;2.21e-59;19!UBERON:0004088;2.21e-59;19!UBERON:0010230;2.21e-59;19!UBERON:0001032;6.33e-58;24!UBERON:0004456;6.33e-58;24!UBERON:0001456;1.14e-53;21!UBERON:0000966;6.30e-46;5!UBERON:0005388;6.30e-46;5!UBERON:0001802;6.30e-46;5!UBERON:0001781;2.05e-43;3!UBERON:0001782;2.05e-43;3!UBERON:0001778;1.33e-42;3!UBERON:0001775;1.33e-42;3!UBERON:0000488;3.66e-32;4!UBERON:0010371;1.74e-27;31!UBERON:0001801;3.21e-25;14!UBERON:0002203;1.06e-21;6!UBERON:0001768;1.06e-21;6!UBERON:0002200;1.06e-21;6!UBERON:0005383;1.53e-19;3!UBERON:0005382;1.53e-19;3!UBERON:0001444;6.90e-17;48!UBERON:0001874;2.75e-15;1!UBERON:0010077;2.96e-15;4!UBERON:0005389;2.96e-15;4!UBERON:0000484;2.96e-15;4!UBERON:0000965;2.96e-15;4!UBERON:0001803;2.96e-15;4!UBERON:0000369;6.48e-15;4!UBERON:0002435;6.48e-15;4!UBERON:0000204;6.48e-15;4!UBERON:0000033;5.93e-14;50!UBERON:0006876;3.87e-12;11!UBERON:0000153;3.76e-11;54!UBERON:0007811;4.51e-10;52!UBERON:0009663;6.30e-09;7!UBERON:0001873;2.67e-08;2!UBERON:0002420;3.90e-07;9!UBERON:0000125;3.90e-07;9!UBERON:0007245;3.90e-07;9!UBERON:0002308;3.90e-07;9!UBERON:0010009;3.90e-07;9!UBERON:0010011;3.90e-07;9!UBERON:0000454;3.90e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007625,2.25e-81,11;UBERON:0000970,2.50e-66,21;UBERON:0002104,2.50e-66,21;UBERON:0000020,5.97e-58,24;UBERON:0001032,5.97e-58,24;UBERON:0004456,5.97e-58,24;UBERON:0000019,1.88e-56,20;UBERON:0000047,1.88e-56,20;UBERON:0010312,1.88e-56,20;UBERON:0004088,1.88e-56,20;UBERON:0010230,1.88e-56,20;UBERON:0003072,1.88e-56,20;UBERON:0004128,1.88e-56,20;UBERON:0003071,1.88e-56,20;UBERON:0001456,2.88e-51,22;UBERON:0001782,2.95e-43,3;UBERON:0005424,2.95e-43,3;UBERON:0001778,7.00e-43,3;UBERON:0001775,7.00e-43,3;UBERON:0000966,2.55e-38,6;UBERON:0005388,2.55e-38,6;UBERON:0001802,2.55e-38,6;UBERON:0005085,3.37e-36,31;UBERON:0001781,1.18e-32,4;UBERON:0000488,2.26e-32,4;UBERON:0003056,1.79e-26,61;UBERON:0001801,2.69e-25,14;UBERON:0001444,1.23e-22,49;UBERON:0002203,7.72e-22,6;UBERON:0001768,7.72e-22,6;UBERON:0002200,7.72e-22,6;UBERON:0000033,1.04e-19,56;UBERON:0003075,1.64e-19,82;UBERON:0007284,1.64e-19,82;UBERON:0005383,1.69e-19,3;UBERON:0005382,1.69e-19,3;UBERON:0002346,1.45e-18,86;UBERON:0000153,1.01e-17,62;UBERON:0007811,1.01e-17,62;UBERON:0010077,3.18e-15,4;UBERON:0005389,3.18e-15,4;UBERON:0000484,3.18e-15,4;UBERON:0002546,3.18e-15,4;UBERON:0000965,3.18e-15,4;UBERON:0001803,3.18e-15,4;UBERON:0003073,3.18e-15,4;UBERON:0005426,3.18e-15,4;UBERON:0010371,3.42e-15,104;UBERON:0001874,3.66e-15,1;UBERON:0000369,6.96e-15,4;UBERON:0002435,6.96e-15,4;UBERON:0000204,6.96e-15,4;UBERON:0010082,6.96e-15,4;UBERON:0006876,3.26e-12,11;UBERON:0010314,9.50e-12,132;UBERON:0009663,6.56e-09,7;UBERON:0004121,1.09e-08,171;UBERON:0000924,1.09e-08,171;UBERON:0006601,1.09e-08,171;UBERON:0001873,2.48e-08,2;UBERON:0010122,2.48e-08,2;UBERON:0000076,4.50e-08,8;UBERON:0001048,7.25e-08,160;UBERON:0002420,4.03e-07,9;UBERON:0000125,4.03e-07,9;UBERON:0007245,4.03e-07,9;UBERON:0002308,4.03e-07,9;UBERON:0010009,4.03e-07,9;UBERON:0010011,4.03e-07,9;UBERON:0000454,4.03e-07,9 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136874425072884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111410456885174,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.9305793320861,1.33037638477538,1.66886092816939,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.454072282934794,0,0,0,0,0,0,0,0,0,0,0,0,0.247266929278557,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121973706129595,0,0.464775771478074,0.621966330092223,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.10093781890338,0.939269553886573,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.335032530668698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.82095137628028,2.62411716559765,2.27764876265012,0,0.0915694648183434,0.082509499920588,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.190630193923825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.485442086998054,0,0,0,0,0,0,0.281338832821026,0,0,0,0,0,0.503865495708552,0,0,0,0,0,0,0,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0.291604613383254,0,0,1.4471572635049,0,0.110579259931225,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.593042257361244,0.741383633679017,0.417687798021821,0.134802265961354,0,0.702793337176017,0,0,0,0,0,0.30607276163049,0.31593289814244,0,0,0.664653872707185,0.992975867626496,0.627865836814451,0,0,0.554698692052555,0,0,0,0,0,0,0,0,0,0,2.48578814858586,0,0,0.0633107959558787,0.195551382734803,0,0,0,0.432271251462318,0.916292769327325,0.171594997861965,0,0,0,0,0,0,0,0,0.136905378891993,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0788057072991982,0,0.422401346077626,0,0,0,0,0,0,0,0,1.19730191562487,0,0,0,0,0,0,0,0,0.704815022316672,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.468334905806882,0.144921028610825,0,0,0,0,0.251567901752575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19998739585493,0.213383459388282,0,0,0,0,0,0.255788742607303,0,0,0.655257829152084,0,0,0,0.558644917973244,0,0,0,0,0,0.513833800771676,0,0,0,0,0,0.484426936895553,0,0,0,0,0,0,0,0.198916222116275,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.91064876540519,0,0,0,0,0,0,0,0,1.09980912941201,0,0,0,0,2.85906176706625,0.94808167039636,0,2.26015753993353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.951360726220549,0,2.96839395212659,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.143339583151451,0,0,0.872701380680755,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103432995861895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.269475606319761,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136874425072884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111410456885174,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.9305793320861,1.33037638477538,1.66886092816939,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.454072282934794,0,0,0,0,0,0,0,0,0,0,0,0,0.247266929278557,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121973706129595,0,0.464775771478074,0.621966330092223,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.10093781890338,0.939269553886573,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.335032530668698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.82095137628028,2.62411716559765,2.27764876265012,0,0.0915694648183434,0.082509499920588,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.190630193923825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.485442086998054,0,0,0,0,0,0,0.281338832821026,0,0,0,0,0,0.503865495708552,0,0,0,0,0,0,0,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0.291604613383254,0,0,1.4471572635049,0,0.110579259931225,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.593042257361244,0.741383633679017,0.417687798021821,0.134802265961354,0,0.702793337176017,0,0,0,0,0,0.30607276163049,0.31593289814244,0,0,0.664653872707185,0.992975867626496,0.627865836814451,0,0,0.554698692052555,0,0,0,0,0,0,0,0,0,0,2.48578814858586,0,0,0.0633107959558787,0.195551382734803,0,0,0,0.432271251462318,0.916292769327325,0.171594997861965,0,0,0,0,0,0,0,0,0.136905378891993,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0788057072991982,0,0.422401346077626,0,0,0,0,0,0,0,0,1.19730191562487,0,0,0,0,0,0,0,0,0.704815022316672,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.468334905806882,0.144921028610825,0,0,0,0,0.251567901752575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19998739585493,0.213383459388282,0,0,0,0,0,0.255788742607303,0,0,0.655257829152084,0,0,0,0.558644917973244,0,0,0,0,0,0.513833800771676,0,0,0,0,0,0.484426936895553,0,0,0,0,0,0,0,0.198916222116275,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.91064876540519,0,0,0,0,0,0,0,0,1.09980912941201,0,0,0,0,2.85906176706625,0.94808167039636,0,2.26015753993353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.951360726220549,0,2.96839395212659,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.143339583151451,0,0,0.872701380680755,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103432995861895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.269475606319761,0,0,0,0,0,0 | ||
|short_description=p11@SIX3 | |||
}} | }} |
Latest revision as of 09:41, 17 September 2015
Short description: | p11@SIX3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_11_at_SIX3_5end |
Coexpression cluster: | C573_Lens_small_retina_Ciliary_Retinal_eye_putamen |
Association with transcript: | 135bp_to_NM_005413, uc002run.1_5end |
EntrezGene: | SIX3 |
HGNC: | 10889 |
UniProt: | O95343 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
retinal pigment epithelial cell | 2.95e-43 | 3 |
ciliated cell | 7.00e-43 | 3 |
ciliated epithelial cell | 7.00e-43 | 3 |
multi-ciliated epithelial cell | 7.00e-43 | 3 |
non-pigmented ciliary epithelial cell | 7.00e-43 | 3 |
visual pigment cell | 1.18e-32 | 4 |
crystallin accumulating cell | 3.18e-15 | 4 |
vertebrate lens cell | 3.18e-15 | 4 |
lens epithelial cell | 3.18e-15 | 4 |
columnar/cuboidal epithelial cell | 3.74e-13 | 27 |
pigment cell | 8.44e-10 | 14 |
neurecto-epithelial cell | 5.80e-07 | 20 |