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(Created page with "{{f5samples |id=FF:11865-125B2 |name=CD14+ monocytes - treated with lipopolysaccharide, donor1 |sample_id=11865 |rna_tube_id= |rna_box=125 |rna_position=B2 |sample_cell...")
 
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{{f5samples
{{f5samples
|id=FF:11865-125B2
|DRA_sample_Accession=CAGE@SAMD00004927
|name=CD14+ monocytes - treated with lipopolysaccharide, donor1
|accession_numbers=CAGE;DRX008159;DRR009031;DRZ000456;DRZ001841;DRZ011806;DRZ013191
|sample_id=11865
|ancestors_in_anatomy_facet=
|rna_tube_id=
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000325,CL:0000473,CL:0000234,CL:0000738,CL:0002087,CL:0000255,CL:0000576,CL:0000860,CL:0002057
|rna_box=125
|rna_position=B2
|sample_cell_lot=
|sample_cell_catalog=
|sample_company=
|rna_lot_number=D3-6
|rna_catalog_number=
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=
|sample_tissue=
|sample_donor(cell lot)=donor1
|sample_sex=female
|sample_age=69
|sample_ethnicity=
|rna_rin=9.20000
|rna_od260/230=1.79000
|rna_od260/280=2.02000
|sample_cell_type=monocyte
|sample_cell_line=
|sample_collaboration=Christine Wells (University of Queensland)
|sample_experimental_condition=
|sample_disease=
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_weight_ug=4.01145
|rna_concentration=0.80229
|sample_note=
|profile_hcage=CNhs13470,,,SEQUENCING QUEUE
|profile_cagescan=,,,
|profile_srnaseq=,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000037,CL:0000040,CL:0000048,CL:0000049,CL:0000063,CL:0000134,CL:0000144,CL:0000219,CL:0000255,CL:0000548,CL:0000557,CL:0000559,CL:0000566,CL:0000576,CL:0000723,CL:0000738,CL:0000763,CL:0000766,CL:0000837,CL:0000839,CL:0000860,CL:0000988,CL:0001012,CL:0002009,CL:0002031,CL:0002032,CL:0002057,CL:0002087,CL:0002194,CL:0002320,CL:0002371
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000062,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000479,UBERON:0000480,UBERON:0000922,UBERON:0000923,UBERON:0000926,UBERON:0001062,UBERON:0001434,UBERON:0001474,UBERON:0002050,UBERON:0002193,UBERON:0002204,UBERON:0002371,UBERON:0002384,UBERON:0002390,UBERON:0002405,UBERON:0002532,UBERON:0004120,UBERON:0004765,UBERON:0005423
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000625,FF:0000350,FF:0000335,FF:0011108
 
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|expression_enrichment_score=chr2:68592406..68592424,+!p1@PLEK!3.48!3045.16!PLEK;;chr11:47400078..47400106,-!p1@SPI1!2.89!777.94!SPI1;;chr7:115670804..115670825,-!p1@TFEC!2.76!579.37!TFEC;;chr16:85932760..85932775,+!p1@IRF8!2.42!262.74!IRF8;;chr12:54778471..54778528,-!p1@ZNF385A!2.31!200.99!ZNF385A;;chr20:39317868..39317884,-!p1@MAFB!2.20!1744.16!MAFB;;chr11:47400062..47400077,-!p2@SPI1!2.18!149.53!SPI1;;chr14:35872453..35872485,-!p2@NFKBIA!2.15!332.97!NFKBIA;;chr3:101546827..101546847,+!p2@NFKBIZ!2.13!184.65!NFKBIZ;;chr11:47399947..47399961,-!p3@SPI1!2.11!128.95!SPI1;;chr2:192015701..192015743,-!p1@STAT4!2.10!167.70!STAT4;;chr6:126240380..126240430,+!p2@NCOA7!2.01!254.87!NCOA7;;chr10:51572408..51572454,+!p3@NCOA4!1.99!537.59!NCOA4;;chr2:70142232..70142251,+!p1@MXD1!1.99!517.01!MXD1;;chr12:72056800..72056834,+!p1@THAP2!1.99!128.34!THAP2;;chr12:72056749..72056767,+!p6@THAP2!1.98!103.52!THAP2;;chr14:35873947..35873965,-!p1@NFKBIA!1.96!5355.97!NFKBIA;;chr21:34442439..34442455,+!p1@OLIG1!1.94!86.57!OLIG1;;chr10:104155659..104155676,+!p4@NFKB2!1.90!96.86!NFKB2;;chr19:50432132..50432217,+!p2@ATF5!1.86!84.76!ATF5;;chr11:615942..615957,-!p1@IRF7!1.84!612.06!IRF7;;chr10:104155480..104155534,+!p2@NFKB2!1.83!408.04!NFKB2;;chr11:65430554..65430579,-!p3@RELA!1.83!162.85!RELA;;chr11:47400032..47400043,-!p5@SPI1!1.82!65.38!SPI1;;chr12:72056773..72056796,+!p3@THAP2!1.80!79.91!THAP2;;chr3:101568349..101568365,+!p1@NFKBIZ!1.79!2945.27!NFKBIZ;;chr4:103422499..103422632,+!p1@NFKB1!1.79!1180.53!NFKB1;;chr2:145275162..145275202,-!p2@ZEB2!1.79!337.21!ZEB2;;chr11:47399996..47400014,-!p4@SPI1!1.79!60.54!SPI1;;chr1:38325227..38325246,-!p2@MTF1!1.78!79.31!MTF1;;chr21:30673091..30673135,+!p7@BACH1!1.78!59.93!BACH1;;chr7:50344289..50344323,+!p1@IKZF1!1.78!59.93!IKZF1;;chr1:37940170..37940190,+!p1@ZC3H12A!1.76!650.80!ZC3H12A;;chr2:145277640..145277771,-!p1@ZEB2!1.73!670.78!ZEB2;;chr2:61108695..61108753,+!p1@REL!1.73!346.89!REL;;chr10:31288398..31288455,-!p2@ZNF438!1.71!58.72!ZNF438;;chr2:68592394..68592405,+!p2@PLEK!1.70!49.04!PLEK;;chr10:35484053..35484076,+!p1@CREM!1.69!115.63!CREM;;chr9:102584262..102584276,+!p1@NR4A3!1.69!102.92!NR4A3;;chr6:126240442..126240459,+!p4@NCOA7!1.68!58.72!NCOA7;;chr21:30671690..30671762,+!p2@BACH1!1.67!149.53!BACH1;;chr8:123793988..123794016,+!p1@ZHX2!1.67!78.70!ZHX2;;chr6:144385698..144385742,-!p2@PLAGL1!1.64!50.85!PLAGL1;;chr10:104154246..104154347,+!p3@NFKB2!1.63!242.16!NFKB2;;chr6:106534192..106534224,+!p1@PRDM1!1.63!114.42!PRDM1;;chr10:51572339..51572376,+!p4@NCOA4!1.63!92.02!NCOA4;;chr4:81104895..81104920,+!p2@PRDM8!1.62!59.93!PRDM8;;chr11:65430535..65430549,-!p4@RELA!1.62!47.22!RELA;;chr18:77155922..77155939,+!p1@NFATC1!1.61!105.34!NFATC1;;chr9:102584128..102584144,+!p3@NR4A3!1.58!68.41!NR4A3;;chr11:615570..615721,-!p2@IRF7!1.56!68.41!IRF7;;chr6:126240463..126240489,+!p6@NCOA7!1.56!39.35!NCOA7;;chr2:231090471..231090504,+!p2@SP140!1.56!35.72!SP140;;chrX:153305787..153305807,-!p3@MECP2!1.56!35.72!MECP2;;chr16:31885093..31885165,+!p1@ZNF267!1.54!492.80!ZNF267;;chr1:157108130..157108173,-!p1@ETV3!1.54!234.90!ETV3;;chr6:12012170..12012245,+!p1@HIVEP1!1.54!161.04!HIVEP1;;chr1:221052776..221052799,+!p1@HLX!1.54!59.33!HLX;;chr2:231084639..231084654,-!p2@SP110!1.54!54.49!SP110;;chr14:35872926..35872951,-!p4@NFKBIA!1.54!46.62!NFKBIA;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.54!33.90!ZBED1;;chr5:131826457..131826514,-!p1@IRF1!1.53!1223.51!IRF1;;chr21:30671235..30671253,+!p1@BACH1!1.52!391.69!BACH1;;chr14:35872494..35872511,-!p5@NFKBIA!1.52!42.38!NFKBIA;;chr10:64018918..64018936,+!p2@ZNF365!1.51!31.48!ZNF365;;chr2:68615063..68615089,+!p4@PLEK!1.51!31.48!PLEK;;chr6:44233252..44233296,-!p1@NFKBIE!1.50!289.99!NFKBIE;;chr9:102584159..102584174,+!p2@NR4A3!1.49!53.28!NR4A3;;chr2:145277882..145277967,-!p3@ZEB2!1.49!50.25!ZEB2;;chr2:231090433..231090469,+!p1@SP140!1.49!29.66!SP140;;chr11:47400045..47400060,-!p6@SPI1!1.49!29.66!SPI1;;chr11:65430586..65430593,-!p5@RELA!1.48!32.69!RELA;;chr2:122042770..122042785,-!p1@TFCP2L1!1.48!29.06!TFCP2L1;;chr22:38597987..38598021,+!p2@MAFF!1.47!166.48!MAFF;;chr19:45252008..45252024,+!p2@BCL3!1.46!88.99!BCL3;;chr14:35872962..35873025,-!p3@NFKBIA!1.46!69.02!NFKBIA;;chr11:64764435..64764449,-!p1@BATF2!1.46!38.14!BATF2;;chr11:47399920..47399931,-!p7@SPI1!1.45!27.24!SPI1;;chr6:15246200..15246214,+!p2@JARID2!1.44!72.04!JARID2;;chr5:142782823..142782854,-!p3@NR3C1!1.44!37.53!NR3C1;;chr17:40440225..40440268,+!p3@STAT5A!1.44!33.90!STAT5A;;chr10:31288370..31288393,-!p3@ZNF438!1.44!26.64!ZNF438;;chr11:34642612..34642646,+!p1@EHF!1.44!26.64!EHF;;chr1:212782094..212782109,+!p1@ATF3!1.43!671.39!ATF3;;chr14:35872542..35872553,-!p10@NFKBIA!1.43!26.03!NFKBIA;;chr4:81104985..81105005,+!p4@PRDM8!1.42!30.88!PRDM8;;chr19:45971246..45971265,+!p1@FOSB!1.41!442.55!FOSB;;chr19:36391434..36391450,-!p1@NFKBID!1.41!47.83!NFKBID;;chr21:30672433..30672464,+!p6@BACH1!1.41!24.82!BACH1;;chr7:115670792..115670797,-!p2@TFEC!1.40!24.22!TFEC;;chrX:129244454..129244488,-!p1@ELF4!1.38!161.04!ELF4;;chr13:41593425..41593480,-!p1@ELF1!1.38!141.66!ELF1;;chr3:39195037..39195069,-!p2@CSRNP1!1.38!137.43!CSRNP1;;chr12:54778351..54778378,-!p6@ZNF385A!1.38!23.01!ZNF385A;;chr9:129567282..129567353,+!p1@ZBTB43!1.37!286.35!ZBTB43;;chr4:81105027..81105039,+!p3@PRDM8!1.37!26.03!PRDM8;;chr14:35872414..35872425,-!p7@NFKBIA!1.37!24.82!NFKBIA;;chr12:72056706..72056717,+!p10@THAP2!1.37!22.40!THAP2;;chr4:81104865..81104886,+!p6@PRDM8!1.36!23.61!PRDM8;;chr19:50432104..50432126,+!p6@ATF5!1.36!21.79!ATF5;;chr2:97202480..97202499,+!p1@ARID5A!1.35!210.07!ARID5A;;chr10:104155680..104155687,+!p6@NFKB2!1.35!21.19!NFKB2;;chr17:40440359..40440386,+!p4@STAT5A!1.35!21.19!STAT5A;;chr7:17338266..17338282,+!p1@AHR!1.34!219.15!AHR;;chr4:103423079..103423112,+!p4@NFKB1!1.33!20.58!NFKB1;;chr21:36260295..36260310,-!p3@RUNX1!1.32!32.09!RUNX1;;chr3:39195139..39195150,-!p3@CSRNP1!1.32!25.43!CSRNP1;;chr6:126240356..126240379,+!p7@NCOA7!1.32!24.22!NCOA7;;chr20:56195474..56195506,-!p1@ZBP1!1.32!19.98!ZBP1;;chr19:46801639..46801699,+!p1@HIF3A!1.31!19.37!HIF3A;;chr6:12011943..12012015,+!p2@HIVEP1!1.30!60.54!HIVEP1;;chr6:391743..391759,+!p1@IRF4!1.30!18.77!IRF4;;chr8:72755203..72755239,-!p10@MSC!1.30!18.77!MSC;;chr3:37217736..37217753,-!p2@LRRFIP2!1.29!76.28!LRRFIP2;;chr6:106534230..106534254,+!p2@PRDM1!1.29!45.40!PRDM1;;chr2:191878812..191878823,-!p2@STAT1!1.29!23.61!STAT1;;chr4:185395633..185395651,-!p2@IRF2!1.28!29.06!IRF2;;chr8:81397820..81397836,+!p2@ZBTB10!1.28!22.40!ZBTB10;;chr2:145275228..145275241,-!p11@ZEB2!1.28!21.79!ZEB2;;chr10:104155455..104155479,+!p1@NFKB2!1.27!248.21!NFKB2;;chr4:106068026..106068084,+!p1@TET2!1.27!153.77!TET2;;chr7:17338324..17338341,+!p3@AHR!1.25!55.70!AHR;;chr1:158979872..158979898,+!p3@IFI16!1.25!51.46!IFI16;;chr1:221052733..221052749,+!p2@HLX!1.25!21.79!HLX;;chr21:40177845..40177863,+!p1@ETS2!1.24!952.29!ETS2;;chr12:11802753..11802834,+!p2@ETV6!1.24!78.70!ETV6;;chr2:68615031..68615055,+!p3@PLEK!1.24!16.35!PLEK;;chr10:3827371..3827386,-!p2@KLF6!1.23!132.58!KLF6;;chr7:106809470..106809481,+!p2@HBP1!1.23!22.40!HBP1;;chr10:64576105..64576133,-!p1@EGR2!1.22!31.48!EGR2;;chr2:70167296..70167306,+!p3@MXD1!1.22!23.61!MXD1;;chr4:81104958..81104981,+!p5@PRDM8!1.22!18.16!PRDM8;;chr2:191885737..191885750,-!p4@STAT1!1.22!15.74!STAT1;;chr9:102584278..102584285,+!p5@NR4A3!1.22!15.74!NR4A3;;chr1:221054853..221054873,+!p9@HLX!1.21!15.13!HLX;;chr1:37947257..37947292,+!p4@ZC3H12A!1.21!15.13!ZC3H12A;;chr1:120190786..120190915,-!p1@ZNF697!1.20!107.16!ZNF697;;chr3:12329397..12329433,+!p2@PPARG!1.20!33.30!PPARG;;chr8:72756063..72756125,-!p1@MSC!1.20!30.27!MSC;;chr8:72756267..72756296,-!p4@MSC!1.20!21.79!MSC;;chr1:25256756..25256774,-!p1@RUNX3!1.19!27.24!RUNX3;;chrX:153305741..153305753,-!p4@MECP2!1.19!14.53!MECP2;;chr7:128577972..128578047,+!p1@IRF5!1.18!22.40!IRF5;;chr2:61108771..61108789,+!p4@REL!1.18!21.19!REL;;chr2:28618532..28618610,+!p4@FOSL2!1.17!23.61!FOSL2;;chr6:34524093..34524135,-!p1@SPDEF!1.17!13.92!SPDEF;;chr8:22550982..22550999,-!p1@EGR3!1.16!38.14!EGR3;;chr12:54785074..54785122,-!p2@ZNF385A!1.16!20.58!ZNF385A;;chrX:24167086..24167111,+!p4@ZFX!1.16!13.32!ZFX;;chrX:153305962..153305995,-!p5@MECP2!1.16!13.32!MECP2;;chr21:34442540..34442560,+!p2@OLIG1!1.16!13.32!OLIG1;;chr6:143266297..143266356,-!p1@HIVEP2!1.15!62.36!HIVEP2;;chr6:12012249..12012266,+!p5@HIVEP1!1.15!23.01!HIVEP1;;chr4:185395590..185395627,-!p3@IRF2!1.15!16.35!IRF2;;chr20:47894569..47894799,-!p1@ZNFX1!1.14!333.58!ZNFX1;;chr6:15246261..15246312,+!p1@JARID2!1.14!305.73!JARID2;;chr21:40177892..40177903,+!p2@ETS2!1.14!50.85!ETS2;;chr10:51575814..51575835,+!p8@NCOA4!1.14!12.71!NCOA4;;chr13:41593392..41593403,-!p7@ELF1!1.14!12.71!ELF1;;chr17:40440177..40440190,+!p6@STAT5A!1.14!12.71!STAT5A;;chr20:48807351..48807384,+!p1@CEBPB!1.13!1276.18!CEBPB;;chr2:231084659..231084721,-!p1@SP110!1.13!290.59!SP110;;chr2:185463247..185463263,+!p1@ZNF804A!1.13!22.40!ZNF804A;;chr9:102584241..102584261,+!p4@NR4A3!1.13!19.37!NR4A3;;chr2:231280954..231280965,+!p2@SP100!1.12!22.40!SP100;;chr8:72756637..72756664,-!p3@MSC!1.12!13.92!MSC;;chr6:36355431..36355466,-!p1@ETV7!1.12!12.11!ETV7;;chr14:75988831..75988847,+!p2@BATF!1.12!12.11!BATF;;chr19:45504688..45504782,+!p1@RELB!1.11!72.04!RELB;;chr18:3449586..3449617,+!p8@TGIF1!1.10!18.77!TGIF1;;chr17:38497662..38497713,+!p4@RARA!1.10!13.32!RARA;;chr8:72755345..72755349,-!p14@MSC!1.10!11.50!MSC;;chr2:192015677..192015691,-!p3@STAT4!1.10!11.50!STAT4;;chr9:110252035..110252057,-!p1@KLF4!1.09!182.83!KLF4;;chr11:113930425..113930471,+!p1@ZBTB16!1.09!16.35!ZBTB16;;chr12:54785054..54785072,-!p4@ZNF385A!1.09!12.71!ZNF385A;;chr7:139762641..139762768,-!p1@PARP12!1.08!149.53!PARP12;;chr3:39195075..39195088,-!p1@CSRNP1!1.08!69.62!CSRNP1;;chr2:208394817..208394834,+!p3@CREB1!1.08!44.80!CREB1;;chr3:187455680..187455700,-!p4@BCL6!1.08!10.90!BCL6;;chr4:103423120..103423142,+!p8@NFKB1!1.08!10.90!NFKB1;;chr19:45251395..45251432,+!p8@BCL3!1.08!10.90!BCL3;;chr10:35484090..35484104,+!p6@CREM!1.08!10.90!CREM;;chr3:170075436..170075520,+!p1@SKIL!1.07!233.08!SKIL;;chr13:41635029..4163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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000234;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000576;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000763;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000766;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000860;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002193;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002390;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002405
|ffid_belonging_in_development=CL:0000049,CL:0000134,CL:0002057
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 67: Line 41:
|fonse_treatment=EFO:0000369,FF:0000335,FF:0000625,FF:0011108,FF:11865-125B2
|fonse_treatment=EFO:0000369,FF:0000335,FF:0000625,FF:0011108,FF:11865-125B2
|fonse_treatment_closure=EFO:0000369,FF:0000335,FF:0000625,FF:0011108,FF:11865-125B2
|fonse_treatment_closure=EFO:0000369,FF:0000335,FF:0000625,FF:0011108,FF:11865-125B2
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|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520lipopolysaccharide%252c%2520donor1.CNhs13470.11865-125B2.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520lipopolysaccharide%252c%2520donor1.CNhs13470.11865-125B2.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520lipopolysaccharide%252c%2520donor1.CNhs13470.11865-125B2.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520lipopolysaccharide%252c%2520donor1.CNhs13470.11865-125B2.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520lipopolysaccharide%252c%2520donor1.CNhs13470.11865-125B2.hg38.nobarcode.ctss.bed.gz
|id=FF:11865-125B2
|is_a=EFO:0002091;;FF:0011108
|is_obsolete=
|library_id=CNhs13470
|library_id_phase_based=2:CNhs13470
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11865
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11865
|name=CD14+ monocytes - treated with lipopolysaccharide, donor1
|namespace=
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|profile_hcage=CNhs13470,LSID1024,release012,COMPLETED
|profile_rnaseq=
|profile_srnaseq=,,,
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|rna_box=125
|rna_catalog_number=
|rna_concentration=0.80229
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_lot_number=D3-6
|rna_od260/230=1.79
|rna_od260/280=2.02
|rna_position=B2
|rna_rin=9.2
|rna_sample_type=total RNA
|rna_tube_id=125B2
|rna_weight_ug=4.01145
|sample_age=69
|sample_category=primary cells
|sample_cell_catalog=
|sample_cell_line=
|sample_cell_lot=
|sample_cell_type=monocyte
|sample_collaboration=Christine Wells (University of Queensland)
|sample_company=
|sample_description=
|sample_dev_stage=
|sample_disease=
|sample_donor(cell lot)=donor1
|sample_ethnicity=
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.59633612713643e-270!GO:0005737;cytoplasm;8.6055473189954e-149!GO:0005515;protein binding;1.82849212564803e-108!GO:0043226;organelle;1.34254407066862e-102!GO:0043229;intracellular organelle;5.95469657513532e-102!GO:0043227;membrane-bound organelle;2.34930233522225e-95!GO:0043231;intracellular membrane-bound organelle;3.77324714865476e-95!GO:0044444;cytoplasmic part;1.99354122051121e-85!GO:0044422;organelle part;4.36233662841215e-66!GO:0044446;intracellular organelle part;1.21309186275126e-64!GO:0032991;macromolecular complex;3.16104766427483e-55!GO:0044237;cellular metabolic process;1.62008877561304e-49!GO:0044238;primary metabolic process;8.92291155187569e-49!GO:0043170;macromolecule metabolic process;2.15650603202151e-48!GO:0003723;RNA binding;2.56768922058288e-47!GO:0019538;protein metabolic process;1.24191153776752e-45!GO:0044260;cellular macromolecule metabolic process;8.69703708207779e-41!GO:0030529;ribonucleoprotein complex;1.35315981432463e-40!GO:0044267;cellular protein metabolic process;2.7205314847252e-40!GO:0033036;macromolecule localization;3.71094947418549e-39!GO:0045184;establishment of protein localization;1.47804073606497e-38!GO:0015031;protein transport;2.52358302244156e-38!GO:0044428;nuclear part;3.21713108425743e-37!GO:0008104;protein localization;6.96955046174011e-37!GO:0016043;cellular component organization and biogenesis;3.35457110824908e-36!GO:0005829;cytosol;5.43727779881987e-36!GO:0005634;nucleus;9.80030384223902e-36!GO:0006915;apoptosis;1.73520355226085e-34!GO:0012501;programmed cell death;2.00584270796308e-34!GO:0006412;translation;2.00584270796308e-34!GO:0008219;cell death;1.43378892316468e-32!GO:0016265;death;1.43378892316468e-32!GO:0043233;organelle lumen;6.73293880939861e-31!GO:0031974;membrane-enclosed lumen;6.73293880939861e-31!GO:0043234;protein complex;2.05785322680144e-30!GO:0031090;organelle membrane;1.70349887346483e-28!GO:0046907;intracellular transport;3.41104030113483e-27!GO:0016071;mRNA metabolic process;2.16356442151083e-26!GO:0043283;biopolymer metabolic process;4.59402353411945e-26!GO:0006886;intracellular protein transport;6.25819810249128e-26!GO:0008134;transcription factor binding;6.93315466260357e-25!GO:0009059;macromolecule biosynthetic process;1.32111776873806e-24!GO:0009058;biosynthetic process;4.39870715592336e-24!GO:0044249;cellular biosynthetic process;4.84531851769012e-24!GO:0008380;RNA splicing;6.96231273581018e-24!GO:0031981;nuclear lumen;3.18131550463563e-23!GO:0042981;regulation of apoptosis;6.04167935905798e-23!GO:0006396;RNA processing;8.83007452718005e-23!GO:0065003;macromolecular complex assembly;1.0008993769967e-22!GO:0043067;regulation of programmed cell death;1.57166467056535e-22!GO:0010467;gene expression;3.39693356506786e-22!GO:0048523;negative regulation of cellular process;3.40933999659246e-22!GO:0006397;mRNA processing;9.43348616132092e-22!GO:0051649;establishment of cellular localization;2.13552692805912e-21!GO:0022607;cellular component assembly;2.22522490903911e-21!GO:0031967;organelle envelope;2.60685844595731e-21!GO:0005840;ribosome;3.84094987398573e-21!GO:0051641;cellular localization;4.29441671554412e-21!GO:0031975;envelope;5.08832133172127e-21!GO:0005739;mitochondrion;5.27715071880582e-21!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.19406999473365e-20!GO:0048519;negative regulation of biological process;1.98740335288402e-20!GO:0000166;nucleotide binding;8.83165333866959e-20!GO:0033279;ribosomal subunit;9.17032725831488e-20!GO:0002376;immune system process;9.96399848485742e-20!GO:0003735;structural constituent of ribosome;1.01077170733071e-19!GO:0044445;cytosolic part;2.26672941764461e-19!GO:0016192;vesicle-mediated transport;5.11359929634394e-19!GO:0007243;protein kinase cascade;6.12855930085588e-19!GO:0005681;spliceosome;1.82280773080106e-17!GO:0048770;pigment granule;2.72702689633075e-17!GO:0042470;melanosome;2.72702689633075e-17!GO:0007249;I-kappaB kinase/NF-kappaB cascade;4.71062916102138e-17!GO:0043687;post-translational protein modification;7.88342433895013e-17!GO:0043412;biopolymer modification;1.17707713403908e-16!GO:0005654;nucleoplasm;1.17707713403908e-16!GO:0044429;mitochondrial part;3.19460704266848e-16!GO:0006464;protein modification process;3.98053109263058e-16!GO:0006366;transcription from RNA polymerase II promoter;5.16097594078737e-16!GO:0007242;intracellular signaling cascade;6.03740526764748e-16!GO:0006955;immune response;6.08705377164702e-16!GO:0044265;cellular macromolecule catabolic process;7.06459508162062e-16!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;7.14871668735721e-16!GO:0003712;transcription cofactor activity;2.05462099754526e-15!GO:0050789;regulation of biological process;2.77014924344007e-15!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.80926998953401e-15!GO:0006119;oxidative phosphorylation;3.11005645783574e-15!GO:0006793;phosphorus metabolic process;3.65494806774922e-15!GO:0006796;phosphate metabolic process;3.65494806774922e-15!GO:0050794;regulation of cellular process;5.137417889996e-15!GO:0051246;regulation of protein metabolic process;9.72247120222754e-15!GO:0048522;positive regulation of cellular process;1.36871640729139e-14!GO:0006996;organelle organization and biogenesis;1.44294023766681e-14!GO:0009615;response to virus;1.47576018712453e-14!GO:0005773;vacuole;1.5107822041775e-14!GO:0043069;negative regulation of programmed cell death;1.59581889422403e-14!GO:0032553;ribonucleotide binding;1.75444886211992e-14!GO:0032555;purine ribonucleotide binding;1.75444886211992e-14!GO:0043066;negative regulation of apoptosis;1.89340249364192e-14!GO:0048518;positive regulation of biological process;2.35027574204483e-14!GO:0006950;response to stress;2.80712399572549e-14!GO:0006512;ubiquitin cycle;3.28321679424459e-14!GO:0043228;non-membrane-bound organelle;3.6852802568208e-14!GO:0043232;intracellular non-membrane-bound organelle;3.6852802568208e-14!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;5.41414820050354e-14!GO:0006913;nucleocytoplasmic transport;6.19611773534281e-14!GO:0044451;nucleoplasm part;6.87058524637083e-14!GO:0017076;purine nucleotide binding;8.59238796567864e-14!GO:0019941;modification-dependent protein catabolic process;8.63835230928791e-14!GO:0043632;modification-dependent macromolecule catabolic process;8.63835230928791e-14!GO:0051603;proteolysis involved in cellular protein catabolic process;9.34582063502878e-14!GO:0006605;protein targeting;1.02761520318164e-13!GO:0051169;nuclear transport;1.31488896440346e-13!GO:0044257;cellular protein catabolic process;1.57284925961222e-13!GO:0006511;ubiquitin-dependent protein catabolic process;2.05031973009623e-13!GO:0043285;biopolymer catabolic process;2.23361775772619e-13!GO:0005794;Golgi apparatus;4.0443537303269e-13!GO:0005740;mitochondrial envelope;4.15061049415402e-13!GO:0016310;phosphorylation;5.20316043644592e-13!GO:0000323;lytic vacuole;5.43098657399169e-13!GO:0005764;lysosome;5.43098657399169e-13!GO:0065007;biological regulation;5.82356170218194e-13!GO:0031966;mitochondrial membrane;6.2058270748267e-13!GO:0022613;ribonucleoprotein complex biogenesis and assembly;8.1163838469925e-13!GO:0006916;anti-apoptosis;8.80033808435942e-13!GO:0022618;protein-RNA complex assembly;1.0621897736522e-12!GO:0016462;pyrophosphatase activity;1.24631943440074e-12!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.25988078599333e-12!GO:0000502;proteasome complex (sensu Eukaryota);1.39859690935663e-12!GO:0016817;hydrolase activity, acting on acid anhydrides;1.56339083512171e-12!GO:0017111;nucleoside-triphosphatase activity;1.69681451133196e-12!GO:0009057;macromolecule catabolic process;1.77002479144186e-12!GO:0019866;organelle inner membrane;2.02492528256074e-12!GO:0048468;cell development;1.0358465587583e-11!GO:0031324;negative regulation of cellular metabolic process;1.3204826322355e-11!GO:0044248;cellular catabolic process;1.55529976777439e-11!GO:0030163;protein catabolic process;2.00415573154819e-11!GO:0005768;endosome;2.14913556891077e-11!GO:0016874;ligase activity;2.33027241211345e-11!GO:0009967;positive regulation of signal transduction;2.46205903856309e-11!GO:0065009;regulation of a molecular function;2.50229962802031e-11!GO:0016604;nuclear body;2.84217221226658e-11!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.91729818057203e-11!GO:0012505;endomembrane system;3.1320520884011e-11!GO:0009892;negative regulation of metabolic process;5.85694298751289e-11!GO:0016564;transcription repressor activity;1.1151481094122e-10!GO:0005783;endoplasmic reticulum;1.74487692165079e-10!GO:0015934;large ribosomal subunit;1.7616791297335e-10!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.79192833391974e-10!GO:0015935;small ribosomal subunit;2.31551810865637e-10!GO:0009607;response to biotic stimulus;2.31551810865637e-10!GO:0008135;translation factor activity, nucleic acid binding;2.98215825373018e-10!GO:0016607;nuclear speck;3.80182383768691e-10!GO:0005524;ATP binding;3.94148990276702e-10!GO:0008092;cytoskeletal protein binding;4.18999932142867e-10!GO:0005743;mitochondrial inner membrane;4.2446660599365e-10!GO:0032559;adenyl ribonucleotide binding;5.4385330622783e-10!GO:0048193;Golgi vesicle transport;7.1708519625712e-10!GO:0044455;mitochondrial membrane part;7.76066463122833e-10!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;7.76066463122833e-10!GO:0016481;negative regulation of transcription;8.25018795441637e-10!GO:0003743;translation initiation factor activity;1.37528698175941e-09!GO:0051170;nuclear import;1.38146600428295e-09!GO:0006457;protein folding;1.94269445865664e-09!GO:0043065;positive regulation of apoptosis;2.00854169578091e-09!GO:0017038;protein import;2.29365529612398e-09!GO:0051186;cofactor metabolic process;2.38894151110492e-09!GO:0004842;ubiquitin-protein ligase activity;2.45692009223186e-09!GO:0019829;cation-transporting ATPase activity;2.49569830175061e-09!GO:0008639;small protein conjugating enzyme activity;2.56106894810693e-09!GO:0006606;protein import into nucleus;2.56345529929575e-09!GO:0030554;adenyl nucleotide binding;2.58547816799186e-09!GO:0006461;protein complex assembly;2.6030649999415e-09!GO:0043068;positive regulation of programmed cell death;3.08803303103979e-09!GO:0006413;translational initiation;4.10864537673964e-09!GO:0006446;regulation of translational initiation;4.59540907584032e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;4.94657949696333e-09!GO:0019787;small conjugating protein ligase activity;5.52756680216025e-09!GO:0006357;regulation of transcription from RNA polymerase II promoter;8.21202337351327e-09!GO:0031982;vesicle;8.33867555157966e-09!GO:0005635;nuclear envelope;1.0507216565163e-08!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.120955978433e-08!GO:0007264;small GTPase mediated signal transduction;1.18312879701998e-08!GO:0019899;enzyme binding;1.21918095446568e-08!GO:0005746;mitochondrial respiratory chain;1.24182569682062e-08!GO:0006417;regulation of translation;1.287485136371e-08!GO:0009966;regulation of signal transduction;1.33349250673466e-08!GO:0030036;actin cytoskeleton organization and biogenesis;1.5756902101077e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.69388105863106e-08!GO:0050136;NADH dehydrogenase (quinone) activity;1.70206207155526e-08!GO:0003954;NADH dehydrogenase activity;1.70206207155526e-08!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.70206207155526e-08!GO:0003713;transcription coactivator activity;1.81824171190405e-08!GO:0015986;ATP synthesis coupled proton transport;2.18995969613314e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.18995969613314e-08!GO:0016070;RNA metabolic process;2.79825955392254e-08!GO:0050790;regulation of catalytic activity;3.32034660049096e-08!GO:0006732;coenzyme metabolic process;3.37087891965325e-08!GO:0006917;induction of apoptosis;5.0109238761096e-08!GO:0031410;cytoplasmic vesicle;5.85644670601941e-08!GO:0009150;purine ribonucleotide metabolic process;6.7899711314791e-08!GO:0030029;actin filament-based process;7.18952736463098e-08!GO:0005770;late endosome;7.77404570146082e-08!GO:0012502;induction of programmed cell death;7.88876113931554e-08!GO:0003714;transcription corepressor activity;8.22041333735807e-08!GO:0031988;membrane-bound vesicle;9.27045852003988e-08!GO:0006163;purine nucleotide metabolic process;1.00442615940415e-07!GO:0006259;DNA metabolic process;1.27749092781135e-07!GO:0031965;nuclear membrane;1.32114652951707e-07!GO:0009889;regulation of biosynthetic process;1.46911154729053e-07!GO:0005525;GTP binding;1.6875764743327e-07!GO:0016563;transcription activator activity;1.74661660760663e-07!GO:0003676;nucleic acid binding;1.78929673127126e-07!GO:0000398;nuclear mRNA splicing, via spliceosome;1.80843117686246e-07!GO:0000375;RNA splicing, via transesterification reactions;1.80843117686246e-07!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.80843117686246e-07!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.82787566045633e-07!GO:0000074;regulation of progression through cell cycle;2.17361018119983e-07!GO:0016044;membrane organization and biogenesis;2.24547533021681e-07!GO:0051726;regulation of cell cycle;2.39671902542763e-07!GO:0009056;catabolic process;2.54695973980907e-07!GO:0006954;inflammatory response;2.55258942321007e-07!GO:0016023;cytoplasmic membrane-bound vesicle;2.92748686248304e-07!GO:0008565;protein transporter activity;2.9648610420663e-07!GO:0016881;acid-amino acid ligase activity;3.0581968198919e-07!GO:0009259;ribonucleotide metabolic process;3.13350320132563e-07!GO:0009152;purine ribonucleotide biosynthetic process;3.18051917638196e-07!GO:0051082;unfolded protein binding;3.70329691517174e-07!GO:0007049;cell cycle;3.89257071292028e-07!GO:0031326;regulation of cellular biosynthetic process;3.9363749006031e-07!GO:0005793;ER-Golgi intermediate compartment;3.99915820596547e-07!GO:0016469;proton-transporting two-sector ATPase complex;4.0920267575496e-07!GO:0003924;GTPase activity;4.4679020861552e-07!GO:0006164;purine nucleotide biosynthetic process;4.82488426545927e-07!GO:0016879;ligase activity, forming carbon-nitrogen bonds;5.16446974379579e-07!GO:0046034;ATP metabolic process;6.22655637791471e-07!GO:0045786;negative regulation of progression through cell cycle;6.25304648228617e-07!GO:0006754;ATP biosynthetic process;6.36042694616554e-07!GO:0006753;nucleoside phosphate metabolic process;6.36042694616554e-07!GO:0030964;NADH dehydrogenase complex (quinone);6.80973196194411e-07!GO:0045271;respiratory chain complex I;6.80973196194411e-07!GO:0005747;mitochondrial respiratory chain complex I;6.80973196194411e-07!GO:0015078;hydrogen ion transmembrane transporter activity;9.00109954998166e-07!GO:0009055;electron carrier activity;9.32806522159473e-07!GO:0016772;transferase activity, transferring phosphorus-containing groups;1.18874763152847e-06!GO:0042775;organelle ATP synthesis coupled electron transport;1.28878040604658e-06!GO:0042773;ATP synthesis coupled electron transport;1.28878040604658e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.29329394461219e-06!GO:0009144;purine nucleoside triphosphate metabolic process;1.29329394461219e-06!GO:0044453;nuclear membrane part;1.36873349470641e-06!GO:0005730;nucleolus;1.45189280942796e-06!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.52653031159372e-06!GO:0045892;negative regulation of transcription, DNA-dependent;1.90898079766059e-06!GO:0009199;ribonucleoside triphosphate metabolic process;1.93013192495123e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;2.08831947035132e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;2.08831947035132e-06!GO:0005839;proteasome core complex (sensu Eukaryota);2.1430685570105e-06!GO:0003779;actin binding;2.37691893360505e-06!GO:0044432;endoplasmic reticulum part;2.44395664744721e-06!GO:0005774;vacuolar membrane;2.64133107340307e-06!GO:0032561;guanyl ribonucleotide binding;2.66093441571271e-06!GO:0019001;guanyl nucleotide binding;2.66093441571271e-06!GO:0031252;leading edge;2.79825169187748e-06!GO:0051188;cofactor biosynthetic process;2.82320395337325e-06!GO:0009142;nucleoside triphosphate biosynthetic process;3.23999196353161e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;3.23999196353161e-06!GO:0009108;coenzyme biosynthetic process;3.23999196353161e-06!GO:0009260;ribonucleotide biosynthetic process;3.28900259446162e-06!GO:0006952;defense response;3.87696101615433e-06!GO:0044440;endosomal part;4.32717205099162e-06!GO:0010008;endosome membrane;4.32717205099162e-06!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;5.59775844997466e-06!GO:0009141;nucleoside triphosphate metabolic process;5.83095692589952e-06!GO:0051789;response to protein stimulus;6.47471834759048e-06!GO:0006986;response to unfolded protein;6.47471834759048e-06!GO:0006897;endocytosis;7.13587666040399e-06!GO:0010324;membrane invagination;7.13587666040399e-06!GO:0042623;ATPase activity, coupled;7.46787614307886e-06!GO:0016887;ATPase activity;9.37562975306436e-06!GO:0009611;response to wounding;1.00100729137941e-05!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.02592472454795e-05!GO:0004298;threonine endopeptidase activity;1.07962874074462e-05!GO:0032446;protein modification by small protein conjugation;1.21108608555245e-05!GO:0030097;hemopoiesis;1.25218703953106e-05!GO:0008047;enzyme activator activity;1.26027481269335e-05!GO:0030120;vesicle coat;1.277463361424e-05!GO:0030662;coated vesicle membrane;1.277463361424e-05!GO:0006752;group transfer coenzyme metabolic process;1.31834065560442e-05!GO:0009893;positive regulation of metabolic process;1.53236178622484e-05!GO:0016197;endosome transport;1.6159516188864e-05!GO:0044437;vacuolar part;1.69071822817693e-05!GO:0016567;protein ubiquitination;2.05837547826182e-05!GO:0048475;coated membrane;2.16040020638436e-05!GO:0030117;membrane coat;2.16040020638436e-05!GO:0030695;GTPase regulator activity;2.16994712118631e-05!GO:0045941;positive regulation of transcription;2.19451827423328e-05!GO:0051707;response to other organism;2.21293569560911e-05!GO:0050657;nucleic acid transport;2.30546389628159e-05!GO:0051236;establishment of RNA localization;2.30546389628159e-05!GO:0050658;RNA transport;2.30546389628159e-05!GO:0005765;lysosomal membrane;2.3100739979686e-05!GO:0045321;leukocyte activation;2.32105292714412e-05!GO:0006888;ER to Golgi vesicle-mediated transport;2.55083713598606e-05!GO:0005643;nuclear pore;2.71359275940425e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;3.10031892763683e-05!GO:0016787;hydrolase activity;3.29979572343952e-05!GO:0042802;identical protein binding;3.47391264830765e-05!GO:0006403;RNA localization;3.60888918749027e-05!GO:0008632;apoptotic program;3.81315524357196e-05!GO:0031980;mitochondrial lumen;4.42364633240264e-05!GO:0005759;mitochondrial matrix;4.42364633240264e-05!GO:0008283;cell proliferation;4.6881642151007e-05!GO:0019222;regulation of metabolic process;4.72018142726842e-05!GO:0030099;myeloid cell differentiation;5.11233238160401e-05!GO:0051336;regulation of hydrolase activity;5.34379303843322e-05!GO:0045893;positive regulation of transcription, DNA-dependent;5.36274810139204e-05!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;5.44956536248426e-05!GO:0051338;regulation of transferase activity;5.59426183089826e-05!GO:0046983;protein dimerization activity;7.1476144043527e-05!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;7.58036252820379e-05!GO:0006325;establishment and/or maintenance of chromatin architecture;8.05530041107451e-05!GO:0016301;kinase activity;8.17626771271283e-05!GO:0051427;hormone receptor binding;8.26878464841042e-05!GO:0043566;structure-specific DNA binding;9.89021856000585e-05!GO:0043549;regulation of kinase activity;0.000102445228484537!GO:0022402;cell cycle process;0.000113379573721546!GO:0006468;protein amino acid phosphorylation;0.00011355114306367!GO:0042175;nuclear envelope-endoplasmic reticulum network;0.00011452331194229!GO:0005083;small GTPase regulator activity;0.000116313645737195!GO:0004674;protein serine/threonine kinase activity;0.000122244252533125!GO:0006613;cotranslational protein targeting to membrane;0.000123677403824753!GO:0032940;secretion by cell;0.000128581553933758!GO:0005789;endoplasmic reticulum membrane;0.000128854494329159!GO:0018193;peptidyl-amino acid modification;0.00013282514671241!GO:0045859;regulation of protein kinase activity;0.00013282514671241!GO:0005057;receptor signaling protein activity;0.000133609847477195!GO:0035257;nuclear hormone receptor binding;0.000135425730422766!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.000136673504268825!GO:0045259;proton-transporting ATP synthase complex;0.000137390826876113!GO:0007259;JAK-STAT cascade;0.000141651513395036!GO:0046649;lymphocyte activation;0.000148068839021931!GO:0001726;ruffle;0.000148241214406497!GO:0006401;RNA catabolic process;0.000165710074525279!GO:0009060;aerobic respiration;0.000170721914956845!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000171194890068173!GO:0015399;primary active transmembrane transporter activity;0.000171194890068173!GO:0006323;DNA packaging;0.000184788540193432!GO:0042221;response to chemical stimulus;0.000204660542809527!GO:0005769;early endosome;0.000207428248142448!GO:0002521;leukocyte differentiation;0.000211555541336788!GO:0046822;regulation of nucleocytoplasmic transport;0.000211759716453717!GO:0031325;positive regulation of cellular metabolic process;0.0002147514259138!GO:0051028;mRNA transport;0.000216209728893598!GO:0022890;inorganic cation transmembrane transporter activity;0.000223860864041301!GO:0007265;Ras protein signal transduction;0.000236972964564954!GO:0048534;hemopoietic or lymphoid organ development;0.000257748110656344!GO:0042110;T cell activation;0.000262963192766065!GO:0002520;immune system development;0.00026994516712263!GO:0030532;small nuclear ribonucleoprotein complex;0.000280445511501173!GO:0005885;Arp2/3 protein complex;0.000305095705085144!GO:0044431;Golgi apparatus part;0.000324231540453938!GO:0008026;ATP-dependent helicase activity;0.000328772518228335!GO:0004386;helicase activity;0.000340865365977075!GO:0022415;viral reproductive process;0.000341889187781195!GO:0005798;Golgi-associated vesicle;0.00035583618887984!GO:0019221;cytokine and chemokine mediated signaling pathway;0.000369087256381426!GO:0043281;regulation of caspase activity;0.000386042009990626!GO:0046519;sphingoid metabolic process;0.000389716033391418!GO:0001775;cell activation;0.000394276580171796!GO:0016568;chromatin modification;0.000397126873689055!GO:0031902;late endosome membrane;0.000416891589691611!GO:0006402;mRNA catabolic process;0.000431078774148682!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000466280923796889!GO:0001816;cytokine production;0.000487016020404649!GO:0051168;nuclear export;0.000517911156141072!GO:0051223;regulation of protein transport;0.000521364689030169!GO:0046930;pore complex;0.00052648433251115!GO:0003702;RNA polymerase II transcription factor activity;0.000526739201658003!GO:0045333;cellular respiration;0.000530005224818334!GO:0009117;nucleotide metabolic process;0.000551303881406698!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.000567112376786984!GO:0002757;immune response-activating signal transduction;0.000567481136901093!GO:0003697;single-stranded DNA binding;0.000616532908350399!GO:0019904;protein domain specific binding;0.000654059567551771!GO:0006672;ceramide metabolic process;0.000661546483365116!GO:0006818;hydrogen transport;0.000963384265070563!GO:0007050;cell cycle arrest;0.000967981643578798!GO:0060090;molecular adaptor activity;0.000987025261424524!GO:0005741;mitochondrial outer membrane;0.00108143875977415!GO:0051090;regulation of transcription factor activity;0.00110150434768932!GO:0033673;negative regulation of kinase activity;0.00110667607869214!GO:0006469;negative regulation of protein kinase activity;0.00110667607869214!GO:0015992;proton transport;0.00111983024338657!GO:0033157;regulation of intracellular protein transport;0.00113829023534167!GO:0042306;regulation of protein import into nucleus;0.00113829023534167!GO:0007010;cytoskeleton organization and biogenesis;0.00119313091811997!GO:0043492;ATPase activity, coupled to movement of substances;0.00120884833590352!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00127215771229675!GO:0005096;GTPase activator activity;0.00128728448604937!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00129216464439336!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.00131336838962913!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00136569961329544!GO:0045637;regulation of myeloid cell differentiation;0.00136569961329544!GO:0065002;intracellular protein transport across a membrane;0.0013790942863649!GO:0016740;transferase activity;0.001405346159831!GO:0007041;lysosomal transport;0.00147235897328034!GO:0003724;RNA helicase activity;0.00152040439982867!GO:0016791;phosphoric monoester hydrolase activity;0.00152040439982867!GO:0003729;mRNA binding;0.00152040439982867!GO:0048471;perinuclear region of cytoplasm;0.0015231418721171!GO:0006919;caspase activation;0.00154652337729087!GO:0007005;mitochondrion organization and biogenesis;0.00156889185744409!GO:0002474;antigen processing and presentation of peptide antigen via MHC class I;0.00159717150661571!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00162462895241426!GO:0002764;immune response-regulating signal transduction;0.00169389513115644!GO:0008361;regulation of cell size;0.00171898426650042!GO:0007040;lysosome organization and biogenesis;0.0017651346358027!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00190963939709128!GO:0006612;protein targeting to membrane;0.00203816558732549!GO:0051348;negative regulation of transferase activity;0.00203816558732549!GO:0030218;erythrocyte differentiation;0.00204335214899722!GO:0008383;manganese superoxide dismutase activity;0.00204335214899722!GO:0001315;age-dependent response to reactive oxygen species;0.00204335214899722!GO:0033116;ER-Golgi intermediate compartment membrane;0.00206164963268159!GO:0000245;spliceosome assembly;0.00206777474522765!GO:0006099;tricarboxylic acid cycle;0.00213800146677775!GO:0046356;acetyl-CoA catabolic process;0.00213800146677775!GO:0008637;apoptotic mitochondrial changes;0.00216008779055357!GO:0004860;protein kinase inhibitor activity;0.00223835517479348!GO:0008234;cysteine-type peptidase activity;0.00224039739879315!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00226664757773585!GO:0043623;cellular protein complex assembly;0.00229380543288853!GO:0043280;positive regulation of caspase activity;0.00229646813562315!GO:0007033;vacuole organization and biogenesis;0.00238612846236724!GO:0000151;ubiquitin ligase complex;0.00253740059613997!GO:0065004;protein-DNA complex assembly;0.00261373670262206!GO:0051187;cofactor catabolic process;0.00268886959465791!GO:0002429;immune response-activating cell surface receptor signaling pathway;0.00273248874362774!GO:0007034;vacuolar transport;0.00274145561607086!GO:0015629;actin cytoskeleton;0.00275847540838016!GO:0004672;protein kinase activity;0.00279087951258643!GO:0005637;nuclear inner membrane;0.00284964113299865!GO:0032386;regulation of intracellular transport;0.00286039004647809!GO:0045045;secretory pathway;0.0028890182711948!GO:0016049;cell growth;0.00296868589107581!GO:0042990;regulation of transcription factor import into nucleus;0.00301014636603137!GO:0042991;transcription factor import into nucleus;0.00301014636603137!GO:0051059;NF-kappaB binding;0.00306795849011681!GO:0030217;T cell differentiation;0.00316521646650048!GO:0008654;phospholipid biosynthetic process;0.00337534168387886!GO:0007165;signal transduction;0.00338712578972245!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00344324701699758!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.0035126618362317!GO:0030133;transport vesicle;0.00353318844248975!GO:0048869;cellular developmental process;0.00353318844248975!GO:0030154;cell differentiation;0.00353318844248975!GO:0019210;kinase inhibitor activity;0.00366054351066066!GO:0005667;transcription factor complex;0.00386038030388567!GO:0051276;chromosome organization and biogenesis;0.00389107891858643!GO:0043085;positive regulation of catalytic activity;0.00431192415134102!GO:0031968;organelle outer membrane;0.0043273664235786!GO:0051345;positive regulation of hydrolase activity;0.00460289284153317!GO:0045792;negative regulation of cell size;0.00487653554882438!GO:0046631;alpha-beta T cell activation;0.00490891208922201!GO:0030027;lamellipodium;0.00511696204134768!GO:0006974;response to DNA damage stimulus;0.00553271684510167!GO:0019079;viral genome replication;0.00576936128172472!GO:0043433;negative regulation of transcription factor activity;0.00576936128172472!GO:0051051;negative regulation of transport;0.00580357062889642!GO:0051128;regulation of cellular component organization and biogenesis;0.00585097863304383!GO:0030308;negative regulation of cell growth;0.00585097863304383!GO:0030041;actin filament polymerization;0.00588976344816669!GO:0045454;cell redox homeostasis;0.00588976344816669!GO:0019867;outer membrane;0.00597488440323795!GO:0006084;acetyl-CoA metabolic process;0.00601570113273553!GO:0005070;SH3/SH2 adaptor activity;0.00621295114186825!GO:0006979;response to oxidative stress;0.00621394649646341!GO:0045944;positive regulation of transcription from RNA polymerase II promoter;0.00633453558193703!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00639599244416606!GO:0030149;sphingolipid catabolic process;0.00646104829111463!GO:0000139;Golgi membrane;0.00659783253317468!GO:0042127;regulation of cell proliferation;0.00662167890210979!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00677267474019777!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00677267474019777!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00677267474019777!GO:0051049;regulation of transport;0.00694625960481106!GO:0050900;leukocyte migration;0.00701571081655568!GO:0005791;rough endoplasmic reticulum;0.00715318099512847!GO:0031323;regulation of cellular metabolic process;0.00715318099512847!GO:0002768;immune response-regulating cell surface receptor signaling pathway;0.00740063739280278!GO:0009109;coenzyme catabolic process;0.00742592359157626!GO:0005788;endoplasmic reticulum lumen;0.00764477732016918!GO:0030098;lymphocyte differentiation;0.00766731018705592!GO:0006935;chemotaxis;0.00766731018705592!GO:0042330;taxis;0.00766731018705592!GO:0005761;mitochondrial ribosome;0.00779822739354602!GO:0000313;organellar ribosome;0.00779822739354602!GO:0015631;tubulin binding;0.00785107081398725!GO:0006333;chromatin assembly or disassembly;0.00788943297880804!GO:0004185;serine carboxypeptidase activity;0.00801112105815339!GO:0006607;NLS-bearing substrate import into nucleus;0.00805390999807747!GO:0006643;membrane lipid metabolic process;0.00814279201737166!GO:0002252;immune effector process;0.00817643966825982!GO:0005048;signal sequence binding;0.00823978562471608!GO:0000060;protein import into nucleus, translocation;0.00837771060145926!GO:0048487;beta-tubulin binding;0.00837771060145926!GO:0046966;thyroid hormone receptor binding;0.00838987455239857!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.00838987455239857!GO:0004812;aminoacyl-tRNA ligase activity;0.00838987455239857!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.00838987455239857!GO:0001558;regulation of cell growth;0.00838987455239857!GO:0033367;protein localization in mast cell secretory granule;0.00838987455239857!GO:0033365;protein localization in organelle;0.00838987455239857!GO:0033371;T cell secretory granule organization and biogenesis;0.00838987455239857!GO:0033373;maintenance of protease localization in mast cell secretory granule;0.00838987455239857!GO:0033375;protease localization in T cell secretory granule;0.00838987455239857!GO:0042629;mast cell granule;0.00838987455239857!GO:0033377;maintenance of protein localization in T cell secretory granule;0.00838987455239857!GO:0033364;mast cell secretory granule organization and biogenesis;0.00838987455239857!GO:0033380;granzyme B localization in T cell secretory granule;0.00838987455239857!GO:0033379;maintenance of protease localization in T cell secretory granule;0.00838987455239857!GO:0033370;maintenance of protein localization in mast cell secretory granule;0.00838987455239857!GO:0033368;protease localization in mast cell secretory granule;0.00838987455239857!GO:0033366;protein localization in secretory granule;0.00838987455239857!GO:0033382;maintenance of granzyme B localization in T cell secretory granule;0.00838987455239857!GO:0033374;protein localization in T cell secretory granule;0.00838987455239857!GO:0043021;ribonucleoprotein binding;0.00863040325008517!GO:0045646;regulation of erythrocyte differentiation;0.00876343516768527!GO:0008154;actin polymerization and/or depolymerization;0.00899384857746456!GO:0004197;cysteine-type endopeptidase activity;0.00905131670680926!GO:0003690;double-stranded DNA binding;0.00910468723634079!GO:0051092;activation of NF-kappaB transcription factor;0.00927628699845866!GO:0031901;early endosome membrane;0.00992826443437428!GO:0008186;RNA-dependent ATPase activity;0.00993185102330818!GO:0002684;positive regulation of immune system process;0.0100961133624424!GO:0019377;glycolipid catabolic process;0.0100961133624424!GO:0019058;viral infectious cycle;0.0100961133624424!GO:0005813;centrosome;0.0102395541818953!GO:0006984;ER-nuclear signaling pathway;0.0102735021135447!GO:0002682;regulation of immune system process;0.0103415327448483!GO:0006891;intra-Golgi vesicle-mediated transport;0.0106051997113324!GO:0008139;nuclear localization sequence binding;0.0107260269238765!GO:0042254;ribosome biogenesis and assembly;0.0107648783741541!GO:0016311;dephosphorylation;0.0107726905531747!GO:0030518;steroid hormone receptor signaling pathway;0.0108340900199931!GO:0050851;antigen receptor-mediated signaling pathway;0.010848014097426!GO:0048500;signal recognition particle;0.0110405583332632!GO:0009605;response to external stimulus;0.0112010171898729!GO:0016251;general RNA polymerase II transcription factor activity;0.0112143644660962!GO:0044262;cellular carbohydrate metabolic process;0.0113348035120652!GO:0046466;membrane lipid catabolic process;0.0114341429831783!GO:0043038;amino acid activation;0.0114604013244321!GO:0006418;tRNA aminoacylation for protein translation;0.0114604013244321!GO:0043039;tRNA aminoacylation;0.0114604013244321!GO:0000785;chromatin;0.0118521519225368!GO:0008286;insulin receptor signaling pathway;0.0123563579907967!GO:0030658;transport vesicle membrane;0.0124371129026523!GO:0009165;nucleotide biosynthetic process;0.0124922073990139!GO:0001836;release of cytochrome c from mitochondria;0.0128550341097491!GO:0043621;protein self-association;0.0137333232724461!GO:0048660;regulation of smooth muscle cell proliferation;0.0141129451043178!GO:0002250;adaptive immune response;0.0142160340556674!GO:0002460;adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains;0.0142160340556674!GO:0019220;regulation of phosphate metabolic process;0.0143994332516114!GO:0051174;regulation of phosphorus metabolic process;0.0143994332516114!GO:0030127;COPII vesicle coat;0.0145183920226732!GO:0012507;ER to Golgi transport vesicle membrane;0.0145183920226732!GO:0030134;ER to Golgi transport vesicle;0.014575717075694!GO:0004721;phosphoprotein phosphatase activity;0.0146487458935434!GO:0050778;positive regulation of immune response;0.0149059316084775!GO:0006260;DNA replication;0.0151132191865736!GO:0005152;interleukin-1 receptor antagonist activity;0.0151787073686517!GO:0030353;fibroblast growth factor receptor antagonist activity;0.0151787073686517!GO:0050680;negative regulation of epithelial cell proliferation;0.015245782347603!GO:0030867;rough endoplasmic reticulum membrane;0.0152952118666288!GO:0030521;androgen receptor signaling pathway;0.0152952118666288!GO:0051091;positive regulation of transcription factor activity;0.0153542960162363!GO:0005099;Ras GTPase activator activity;0.0157145708648164!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0157587638334514!GO:0005905;coated pit;0.0158957206708433!GO:0006091;generation of precursor metabolites and energy;0.0158957206708433!GO:0048872;homeostasis of number of cells;0.0160453137509593!GO:0002467;germinal center formation;0.0160642879636275!GO:0005062;hematopoietin/interferon-class (D200-domain) cytokine receptor signal transducer activity;0.016347369109846!GO:0004177;aminopeptidase activity;0.0164387498726603!GO:0030031;cell projection biogenesis;0.0165520312424217!GO:0030118;clathrin coat;0.0168688363478819!GO:0006611;protein export from nucleus;0.0169731667815431!GO:0001516;prostaglandin biosynthetic process;0.0173052141187859!GO:0046457;prostanoid biosynthetic process;0.0173052141187859!GO:0045926;negative regulation of growth;0.0183390630172245!GO:0019883;antigen processing and presentation of endogenous antigen;0.0190775279003875!GO:0009719;response to endogenous stimulus;0.0194250998340554!GO:0019843;rRNA binding;0.0198982091756581!GO:0046632;alpha-beta T cell differentiation;0.0201177534234971!GO:0030176;integral to endoplasmic reticulum membrane;0.0201579474483478!GO:0008333;endosome to lysosome transport;0.0203202501829966!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0203202501829966!GO:0045047;protein targeting to ER;0.0203202501829966!GO:0005138;interleukin-6 receptor binding;0.0203427088791254!GO:0030663;COPI coated vesicle membrane;0.0203835352759338!GO:0030126;COPI vesicle coat;0.0203835352759338!GO:0006458;'de novo' protein folding;0.0205138631880459!GO:0051084;'de novo' posttranslational protein folding;0.0205138631880459!GO:0046479;glycosphingolipid catabolic process;0.0205271284804533!GO:0032763;regulation of mast cell cytokine production;0.0205271284804533!GO:0032762;mast cell cytokine production;0.0205271284804533!GO:0003725;double-stranded RNA binding;0.0205271284804533!GO:0051101;regulation of DNA binding;0.0214749409411842!GO:0001819;positive regulation of cytokine production;0.0216638987220731!GO:0003727;single-stranded RNA binding;0.0219661140642014!GO:0001666;response to hypoxia;0.0220657282072897!GO:0008287;protein serine/threonine phosphatase complex;0.0221082229185902!GO:0031072;heat shock protein binding;0.0228530452389225!GO:0031625;ubiquitin protein ligase binding;0.0228530452389225!GO:0051098;regulation of binding;0.0228530452389225!GO:0004004;ATP-dependent RNA helicase activity;0.0228530452389225!GO:0043086;negative regulation of catalytic activity;0.0231199948791822!GO:0050776;regulation of immune response;0.0235289351799082!GO:0030674;protein binding, bridging;0.0235334043366921!GO:0030155;regulation of cell adhesion;0.0235334043366921!GO:0035035;histone acetyltransferase binding;0.0240973698527353!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0241392774983538!GO:0010468;regulation of gene expression;0.0243638755265228!GO:0030137;COPI-coated vesicle;0.0253252599613295!GO:0005815;microtubule organizing center;0.025443093485813!GO:0017022;myosin binding;0.025852319101228!GO:0005149;interleukin-1 receptor binding;0.0261262294303446!GO:0045746;negative regulation of Notch signaling pathway;0.0263573182427561!GO:0002274;myeloid leukocyte activation;0.0264852230418273!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0265865770038868!GO:0002224;toll-like receptor signaling pathway;0.0268737487756321!GO:0002221;pattern recognition receptor signaling pathway;0.0268737487756321!GO:0043022;ribosome binding;0.0274044494365079!GO:0050811;GABA receptor binding;0.0282967744196519!GO:0000082;G1/S transition of mitotic cell cycle;0.0283317889786399!GO:0017166;vinculin binding;0.0283728404189407!GO:0030100;regulation of endocytosis;0.0285834685211097!GO:0051247;positive regulation of protein metabolic process;0.0286083668142383!GO:0004715;non-membrane spanning protein tyrosine kinase activity;0.0291920585064275!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0294224950386848!GO:0006281;DNA repair;0.0312663714783387!GO:0043087;regulation of GTPase activity;0.0313220917951385!GO:0051056;regulation of small GTPase mediated signal transduction;0.0313223967362964!GO:0051920;peroxiredoxin activity;0.0319303156888165!GO:0008629;induction of apoptosis by intracellular signals;0.0319938553425107!GO:0046209;nitric oxide metabolic process;0.0326423722713148!GO:0006809;nitric oxide biosynthetic process;0.0326423722713148!GO:0002763;positive regulation of myeloid leukocyte differentiation;0.0326750393439486!GO:0005085;guanyl-nucleotide exchange factor activity;0.0328503267968222!GO:0001776;leukocyte homeostasis;0.0331056765650375!GO:0030660;Golgi-associated vesicle membrane;0.0332145700810916!GO:0002504;antigen processing and presentation of peptide or polysaccharide antigen via MHC class II;0.0333297452022497!GO:0051329;interphase of mitotic cell cycle;0.0334618692442834!GO:0001725;stress fiber;0.0336560472537966!GO:0032432;actin filament bundle;0.0336560472537966!GO:0006665;sphingolipid metabolic process;0.0338441620772159!GO:0007162;negative regulation of cell adhesion;0.0338441620772159!GO:0004702;receptor signaling protein serine/threonine kinase activity;0.0339480012686872!GO:0046979;TAP2 binding;0.0341514741454662!GO:0046977;TAP binding;0.0341514741454662!GO:0046978;TAP1 binding;0.0341514741454662!GO:0005350;pyrimidine transmembrane transporter activity;0.0342451223665645!GO:0015855;pyrimidine transport;0.0342451223665645!GO:0015288;porin activity;0.0342451223665645!GO:0008017;microtubule binding;0.0342808416391989!GO:0001817;regulation of cytokine production;0.0345632954757719!GO:0051235;maintenance of localization;0.0346570819861603!GO:0032760;positive regulation of tumor necrosis factor production;0.034659042723623!GO:0051325;interphase;0.034659042723623!GO:0051252;regulation of RNA metabolic process;0.034659042723623!GO:0002263;cell activation during immune response;0.034659042723623!GO:0042093;T-helper cell differentiation;0.034659042723623!GO:0002366;leukocyte activation during immune response;0.034659042723623!GO:0002293;alpha-beta T cell differentiation during immune response;0.034659042723623!GO:0002294;CD4-positive, alpha-beta T cell differentiation during immune response;0.034659042723623!GO:0002285;lymphocyte activation during immune response;0.034659042723623!GO:0002292;T cell differentiation during immune response;0.034659042723623!GO:0002286;T cell activation during immune response;0.034659042723623!GO:0006368;RNA elongation from RNA polymerase II promoter;0.034893048538877!GO:0006414;translational elongation;0.0362865920778428!GO:0042832;defense response to protozoan;0.0366156213255059!GO:0002253;activation of immune response;0.0367739757596749!GO:0043407;negative regulation of MAP kinase activity;0.0370010415969169!GO:0030433;ER-associated protein catabolic process;0.0373093395522048!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0373093395522048!GO:0008285;negative regulation of cell proliferation;0.0376319309408683!GO:0045089;positive regulation of innate immune response;0.0378402500215712!GO:0045088;regulation of innate immune response;0.0378402500215712!GO:0004704;NF-kappaB-inducing kinase activity;0.0378819482623559!GO:0030503;regulation of cell redox homeostasis;0.0379230670349831!GO:0015980;energy derivation by oxidation of organic compounds;0.0380350714844237!GO:0006509;membrane protein ectodomain proteolysis;0.0382292234318046!GO:0033619;membrane protein proteolysis;0.0382292234318046!GO:0008624;induction of apoptosis by extracellular signals;0.0385676741081335!GO:0040008;regulation of growth;0.0385676741081335!GO:0030968;unfolded protein response;0.0386731615245429!GO:0000209;protein polyubiquitination;0.038888576065766!GO:0001562;response to protozoan;0.0389374094874532!GO:0006213;pyrimidine nucleoside metabolic process;0.0390065224864098!GO:0046426;negative regulation of JAK-STAT cascade;0.0390992067558021!GO:0004722;protein serine/threonine phosphatase activity;0.0391117313848374!GO:0048659;smooth muscle cell proliferation;0.0399274723991968!GO:0006354;RNA elongation;0.0399791473490027!GO:0051023;regulation of immunoglobulin secretion;0.0408720076779134!GO:0045994;positive regulation of translational initiation by iron;0.0408720076779134!GO:0051248;negative regulation of protein metabolic process;0.0409473238308264!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.040997495039145!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.040997495039145!GO:0045639;positive regulation of myeloid cell differentiation;0.0410267385565634!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0412893917605175!GO:0033043;regulation of organelle organization and biogenesis;0.0412893917605175!GO:0004896;hematopoietin/interferon-class (D200-domain) cytokine receptor activity;0.0413559060324328!GO:0000278;mitotic cell cycle;0.0417547282605773!GO:0046578;regulation of Ras protein signal transduction;0.0425979542012395!GO:0005856;cytoskeleton;0.0432325300464773!GO:0006352;transcription initiation;0.0432325300464773!GO:0008250;oligosaccharyl transferase complex;0.0432325300464773!GO:0005100;Rho GTPase activator activity;0.0432325300464773!GO:0033033;negative regulation of myeloid cell apoptosis;0.0432325300464773!GO:0001803;regulation of type III hypersensitivity;0.0432325300464773!GO:0032733;positive regulation of interleukin-10 production;0.0432325300464773!GO:0033025;regulation of mast cell apoptosis;0.0432325300464773!GO:0001805;positive regulation of type III hypersensitivity;0.0432325300464773!GO:0033023;mast cell homeostasis;0.0432325300464773!GO:0002431;Fc receptor mediated stimulatory signaling pathway;0.0432325300464773!GO:0033032;regulation of myeloid cell apoptosis;0.0432325300464773!GO:0001802;type III hypersensitivity;0.0432325300464773!GO:0033028;myeloid cell apoptosis;0.0432325300464773!GO:0042590;antigen processing and presentation of exogenous peptide antigen via MHC class I;0.0432325300464773!GO:0033026;negative regulation of mast cell apoptosis;0.0432325300464773!GO:0033024;mast cell apoptosis;0.0432325300464773!GO:0050727;regulation of inflammatory response;0.0432929448136811!GO:0031347;regulation of defense response;0.0432929448136811!GO:0004576;oligosaccharyl transferase activity;0.0434412563004188!GO:0005869;dynactin complex;0.0438786842576015!GO:0008656;caspase activator activity;0.044180909439794!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0449131632684859!GO:0045603;positive regulation of endothelial cell differentiation;0.0452352031260518!GO:0043488;regulation of mRNA stability;0.0452912060143547!GO:0043487;regulation of RNA stability;0.0452912060143547!GO:0008312;7S RNA binding;0.0452912060143547!GO:0006749;glutathione metabolic process;0.0452920273749394!GO:0016505;apoptotic protease activator activity;0.045715473727691!GO:0002822;regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains.;0.045811549399245!GO:0002819;regulation of adaptive immune response;0.045811549399245!GO:0042325;regulation of phosphorylation;0.0461257096025192!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.0466778540365522!GO:0042088;T-helper 1 type immune response;0.0468207220237948!GO:0016363;nuclear matrix;0.0472342371040076!GO:0016504;protease activator activity;0.0474288400440289!GO:0045428;regulation of nitric oxide biosynthetic process;0.0474288400440289!GO:0051020;GTPase binding;0.0480153676454209!GO:0000165;MAPKKK cascade;0.0492751193660744!GO:0030119;AP-type membrane coat adaptor complex;0.0492751193660744!GO:0042405;nuclear inclusion body;0.0494773555968186!GO:0040029;regulation of gene expression, epigenetic;0.0496381000102847!GO:0045113;regulation of integrin biosynthetic process;0.0498018144422983!GO:0045112;integrin biosynthetic process;0.0498018144422983!GO:0016779;nucleotidyltransferase activity;0.0498018144422983!GO:0042108;positive regulation of cytokine biosynthetic process;0.0498018144422983!GO:0007266;Rho protein signal transduction;0.0499901201435447!GO:0051087;chaperone binding;0.0499901201435447
|sample_id=11865
|sample_note=
|sample_sex=female
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=
|top_motifs=IRF7:5.94401633276;IRF1,2:4.89048789;CEBPA,B_DDIT3:3.91174936677;NFE2:3.83500484567;FOS_FOS{B,L1}_JUN{B,D}:3.79745570187;HLF:3.76393128558;NFKB1_REL_RELA:3.761821566;NFE2L2:3.70919318803;BACH2:3.40220696504;DMAP1_NCOR{1,2}_SMARC:3.37890953295;FOSL2:3.12444881645;PAX2:2.97671667819;SPIB:2.80167982764;NFIL3:2.68982916851;NFATC1..3:2.6532145788;SPI1:2.59150775004;HMGA1,2:2.39176946178;ETS1,2:2.28579359317;FOXP3:2.27330063751;ATF5_CREB3:2.14596205012;TBP:2.12742340896;RXRA_VDR{dimer}:1.98459484333;STAT2,4,6:1.88027628298;PAX8:1.85744128387;NR1H4:1.84289812245;ALX4:1.82866045344;ATF6:1.82215486007;BPTF:1.68493507791;PAX3,7:1.64439393949;NFE2L1:1.60046801493;RUNX1..3:1.53306271979;ATF4:1.52416454741;FOXN1:1.52256936347;IKZF1:1.47027475423;JUN:1.45441121626;CDX1,2,4:1.44188037768;SREBF1,2:1.41378717287;EP300:1.33240676668;SRF:1.24387322671;ZBTB16:1.22170617268;POU5F1:1.20388969288;PDX1:1.181426929;NANOG{mouse}:1.13193007547;POU2F1..3:1.1292456845;CREB1:1.03856033637;PAX1,9:1.02424983442;PRDM1:1.01688036266;TFCP2:1.00433117305;FOXL1:0.967935246485;FOXO1,3,4:0.967569406902;STAT5{A,B}:0.910201413566;PITX1..3:0.902882015217;ELF1,2,4:0.827476862017;IKZF2:0.737838117447;TGIF1:0.7319899157;XBP1:0.63147139982;ATF2:0.627318821571;PPARG:0.621720088164;HMX1:0.602751223982;GLI1..3:0.568625885907;FOXD3:0.565992464327;HBP1_HMGB_SSRP1_UBTF:0.54945343041;EN1,2:0.504090108191;HSF1,2:0.446074552025;SMAD1..7,9:0.440412398999;TLX2:0.370892423093;DBP:0.349093350113;MAFB:0.326369956808;ALX1:0.27673843393;PAX4:0.233362493943;POU6F1:0.21469456255;RBPJ:0.17470442582;EGR1..3:0.130595714435;OCT4_SOX2{dimer}:0.107497984633;HIF1A:0.0893618236572;FOXM1:0.0623482622216;FOXP1:0.051465714206;POU3F1..4:-0.0163584165661;NR3C1:-0.0772507324799;GATA4:-0.0902879608349;NKX3-1:-0.139102617311;MEF2{A,B,C,D}:-0.162973804679;TFAP4:-0.206565534241;ESR1:-0.241670621872;MZF1:-0.268746236344;MYFfamily:-0.363765573344;RREB1:-0.369806428329;HOXA9_MEIS1:-0.375679027117;REST:-0.419170574812;HOX{A5,B5}:-0.457198004176;MED-1{core}:-0.486684776659;STAT1,3:-0.513353142652;TAL1_TCF{3,4,12}:-0.528505532027;ZNF384:-0.54817805141;ADNP_IRX_SIX_ZHX:-0.559219503857;FOX{D1,D2}:-0.636507313674;NKX2-2,8:-0.661929975493;NKX6-1,2:-0.665894226048;AHR_ARNT_ARNT2:-0.727923756755;TBX4,5:-0.736492288936;NR6A1:-0.766673535963;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.782234987499;HNF4A_NR2F1,2:-0.794807793433;MYB:-0.840357543706;CDC5L:-0.898422618622;SOX2:-0.90191572866;GTF2I:-0.9091911724;MTE{core}:-0.916446223064;SOX{8,9,10}:-0.919430628459;PATZ1:-0.920321810037;HES1:-0.942221631945;RFX2..5_RFXANK_RFXAP:-0.948952483798;ESRRA:-0.951687817432;RXR{A,B,G}:-0.953305933787;ZFP161:-0.985141860117;TEAD1:-0.986352077401;ZBTB6:-0.997230783511;GTF2A1,2:-1.00268031877;SP1:-1.0113822453;XCPE1{core}:-1.01404299839;NHLH1,2:-1.01429573728;TLX1..3_NFIC{dimer}:-1.02068497773;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.022231846;HNF1A:-1.08025855028;FOXA2:-1.10158723592;GCM1,2:-1.10953836229;ZEB1:-1.12629291763;MAZ:-1.12864197979;RORA:-1.1421259168;T:-1.14356160521;NANOG:-1.16133196961;ZNF148:-1.16393434723;VSX1,2:-1.18601796507;SPZ1:-1.2117831323;TFDP1:-1.21954318026;TFAP2{A,C}:-1.23830201465;PRRX1,2:-1.25316869508;SOX5:-1.26989756523;BREu{core}:-1.27067887086;GZF1:-1.2808696218;SNAI1..3:-1.29711037035;E2F1..5:-1.30220584097;NFIX:-1.32699466893;HOX{A4,D4}:-1.34857261963;TFAP2B:-1.40046408834;MTF1:-1.40320354192;NKX2-1,4:-1.41023529256;KLF4:-1.42934813693;FOX{F1,F2,J1}:-1.42988385884;PAX6:-1.4930890341;UFEwm:-1.54596608825;TP53:-1.54632294258;ZIC1..3:-1.59160124424;TOPORS:-1.64076400582;NKX2-3_NKX2-5:-1.64216692391;LMO2:-1.65670496713;HOX{A6,A7,B6,B7}:-1.66923750928;CUX2:-1.71983743892;GATA6:-1.72174780389;HIC1:-1.72652267402;CRX:-1.73642122082;ZNF238:-1.76901767994;NKX3-2:-1.81628267935;MYOD1:-1.82331818909;EBF1:-1.83275796505;POU1F1:-1.90237118644;MYBL2:-1.90848421851;RFX1:-1.90957587516;GFI1B:-1.91294560829;ONECUT1,2:-1.99019480784;AIRE:-2.16877728759;NFY{A,B,C}:-2.26393670274;TEF:-2.32281962045;ZNF423:-2.38053191883;PAX5:-2.38108907319;FOX{I1,J2}:-2.39904857936;ARID5B:-2.59926428203;SOX17:-2.60772849163;FOXQ1:-2.62440537727;bHLH_family:-2.67233247362;GFI1:-2.81531853783;EVI1:-2.8467306527;ELK1,4_GABP{A,B1}:-2.97441065867;YY1:-3.01150336256;PBX1:-3.02479582128;NR5A1,2:-3.03594363912;NRF1:-3.10887999201;LHX3,4:-3.13521611884;AR:-3.2302031286;HAND1,2:-3.43944901363;LEF1_TCF7_TCF7L1,2:-3.49565503555;ZNF143:-3.65177282041
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11865-125B2;search_select_hide=table117:FF:11865-125B2
}}
}}

Latest revision as of 18:24, 4 June 2020

Name:CD14+ monocytes - treated with lipopolysaccharide, donor1
Species:Human (Homo sapiens)
Library ID:CNhs13470
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueNA
dev stageNA
sexfemale
age69
cell typemonocyte
cell lineNA
companyNA
collaborationChristine Wells (University of Queensland)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberD3-6
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004927
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs13470 CAGE DRX008159 DRR009031
Accession ID Hg19

Library idBAMCTSS
CNhs13470 DRZ000456 DRZ001841
Accession ID Hg38

Library idBAMCTSS
CNhs13470 DRZ011806 DRZ013191
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0.666
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.269
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0.767
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.363
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40.281
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.666
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0.767
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.206
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0.466
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0.206
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0.977
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.378
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.395
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.353
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0.719
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40.345
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0.345
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.461
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0.296
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0.206
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0.459
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.443
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0.719
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.551
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0.206
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.903
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0.45
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.45
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0.275
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0.884
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.507
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40.206
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.345
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0.666
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0.206
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.206
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.601
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0.82
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0.666
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.206
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0.13
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0.507
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0.103
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.352
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0.345
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0.534
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0.206
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0.206
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0.206
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340.206
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0.206
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13470

Jaspar motifP-value
MA0002.22.12948e-6
MA0003.10.688
MA0004.10.791
MA0006.10.784
MA0007.10.948
MA0009.10.428
MA0014.10.532
MA0017.10.108
MA0018.20.41
MA0019.10.251
MA0024.10.00185
MA0025.10.142
MA0027.10.728
MA0028.10.0044
MA0029.10.0766
MA0030.10.1
MA0031.10.173
MA0035.20.0986
MA0038.10.193
MA0039.20.622
MA0040.10.764
MA0041.10.886
MA0042.10.767
MA0043.11.44338e-5
MA0046.10.00334
MA0047.20.23
MA0048.10.759
MA0050.12.27921e-24
MA0051.19.33174e-19
MA0052.10.286
MA0055.10.978
MA0057.10.406
MA0058.10.62
MA0059.10.533
MA0060.11.32008e-11
MA0061.11.52829e-16
MA0062.20.0692
MA0065.20.0285
MA0066.10.0613
MA0067.15.56115e-4
MA0068.10.313
MA0069.10.686
MA0070.10.0091
MA0071.10.588
MA0072.10.782
MA0073.10.616
MA0074.10.145
MA0076.10.0043
MA0077.10.304
MA0078.10.817
MA0079.20.188
MA0080.23.13694e-12
MA0081.10.00113
MA0083.10.267
MA0084.10.511
MA0087.10.948
MA0088.10.105
MA0090.10.646
MA0091.10.695
MA0092.10.39
MA0093.10.865
MA0099.21.91344e-40
MA0100.10.6
MA0101.11.65457e-19
MA0102.26.47641e-11
MA0103.10.221
MA0104.20.88
MA0105.11.98575e-17
MA0106.10.932
MA0107.17.39581e-26
MA0108.20.374
MA0111.10.367
MA0112.29.88702e-5
MA0113.10.597
MA0114.10.181
MA0115.10.827
MA0116.14.0041e-4
MA0117.10.153
MA0119.10.0848
MA0122.10.971
MA0124.10.615
MA0125.10.225
MA0131.10.339
MA0135.10.767
MA0136.11.04427e-10
MA0137.20.137
MA0138.20.767
MA0139.10.5
MA0140.10.0603
MA0141.10.233
MA0142.10.766
MA0143.10.738
MA0144.10.0604
MA0145.10.36
MA0146.10.342
MA0147.10.861
MA0148.10.572
MA0149.10.452
MA0150.14.10877e-19
MA0152.10.91
MA0153.15.65373e-4
MA0154.19.42466e-4
MA0155.10.827
MA0156.12.06026e-6
MA0157.10.665
MA0159.10.0276
MA0160.10.197
MA0162.10.736
MA0163.11.09668e-7
MA0164.10.48
MA0258.10.00722
MA0259.10.361



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13470

Novel motifP-value
10.12
100.0435
1000.814
1010.963
1020.947
1030.237
1040.633
1050.179
1061.42232e-4
1070.0542
1080.866
1090.549
110.127
1100.205
1110.0393
1120.369
1130.173
1140.0307
1150.204
1160.846
1170.187
1180.296
1190.13
120.28
1200.763
1210.737
1220.877
1230.323
1240.642
1250.133
1260.243
1270.426
1280.0301
1290.55
130.132
1300.164
1310.789
1320.289
1330.931
1340.353
1350.733
1360.773
1370.0223
1380.413
1390.131
140.473
1400.305
1410.31
1420.418
1430.0264
1440.649
1450.219
1460.701
1470.948
1480.00647
1490.664
150.182
1500.348
1510.44
1520.387
1530.494
1540.841
1550.96
1560.944
1570.354
1580.0624
1590.744
160.291
1600.432
1610.437
1620.542
1630.0583
1640.134
1650.0282
1660.853
1670.257
1680.0726
1690.0133
170.168
180.126
190.359
20.672
200.251
210.744
220.306
230.0151
240.589
250.573
260.0682
270.641
280.31
290.342
30.0941
300.491
310.528
320.888
330.226
340.589
350.121
360.118
370.117
380.344
390.648
40.991
400.312
410.0441
420.313
430.0192
440.715
450.584
460.172
470.558
480.471
490.106
50.328
500.948
510.513
520.185
530.438
540.325
550.422
560.566
570.853
580.141
590.174
60.677
600.023
610.758
620.0781
630.452
640.56
650.135
660.112
670.474
680.656
690.194
70.324
700.0521
710.0389
720.148
730.402
740.022
750.294
760.25
770.352
780.106
790.963
80.306
800.222
810.224
820.138
830.0341
840.0181
850.00941
860.107
870.943
880.838
890.174
90.24
900.119
910.254
920.187
930.84
940.086
950.896
960.104
970.547
980.116
990.172



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs13470


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0000219 (motile cell)
0000325 (stuff accumulating cell)
0000473 (defensive cell)
0000234 (phagocyte)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0000255 (eukaryotic cell)
0000576 (monocyte)
0000860 (classical monocyte)
0002057 (CD14-positive, CD16-negative classical monocyte)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000625 (experimental infection sample)
0000350 (experimentally modified sample)
0000335 (LPS treatment sample)
0011108 (human CD14-positive monocytes - treated with lipopolysaccharide sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)
CL:0002057 (CD14-positive, CD16-negative classical monocyte)

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