FF:10482-107A5: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005638 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |accession_numbers=CAGE;DRX007837;DRR008709;DRZ000134;DRZ001519;DRZ011484;DRZ012869 | ||
|ancestors_in_disease_facet=DOID:0050686,DOID: | |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000310,UBERON:0002100,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0001062,UBERON:0009569,UBERON:0001443,UBERON:0000915 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000255 | |||
|ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:14566,DOID:0050687,DOID:7,DOID:5093,DOID:305,DOID:299,DOID:1612 | |||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100093,FF:0100297,FF:0101912,FF:0101120,FF:0100816,FF:0100167,FF:0100356 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
| | |||
|fonse_cell_line=FF:0100816,FF:0101120 | |fonse_cell_line=FF:0100816,FF:0101120 | ||
|fonse_cell_line_closure=FF:0100816,FF:0101120 | |fonse_cell_line_closure=FF:0100816,FF:0101120 | ||
| Line 35: | Line 40: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/breast%2520carcinoma%2520cell%2520line%253aMCF7.CNhs11943.10482-107A5.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/breast%2520carcinoma%2520cell%2520line%253aMCF7.CNhs11943.10482-107A5.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/breast%2520carcinoma%2520cell%2520line%253aMCF7.CNhs11943.10482-107A5.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/breast%2520carcinoma%2520cell%2520line%253aMCF7.CNhs11943.10482-107A5.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/breast%2520carcinoma%2520cell%2520line%253aMCF7.CNhs11943.10482-107A5.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10482-107A5 | |id=FF:10482-107A5 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000210;;FF:0100093 | ||
|is_obsolete= | |||
|library_id=CNhs11943 | |||
|library_id_phase_based=2:CNhs11943 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10482 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10482 | |||
|name=breast carcinoma cell line:MCF7 | |name=breast carcinoma cell line:MCF7 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 59: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11943,LSID836,release011,COMPLETED | |profile_hcage=CNhs11943,LSID836,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,0.090414962128934,0,0.601654884227713,0.654407902681811,0,0,0,0,0,0,0,0,0,0,0,0,0,0.297386995146718,0,0,0,0,0,0.0841300627524689,0,0,0.2291749157066,0,0,0,0,0,0,0,0,0,0,0.100517959999704,0,0.223983268757279,0.100517959999704,0,0,0,0,0,0,0,0.101151474994826,0,0,0,0.25073299221532,0.100517959999704,0,0,0.265139144242857,0,0,0.311331528448019,0,0,0,0,0,0,0,0,0.25073299221532,0,0,0,0,0.182087959020526,0,0,0,0,0.205256119020248,0,0.0143769702104931,0,0,0.0410902408717611,0,0,0,0.00391408224045819,0.281394196477096,-0.120153423185605,0.050258979999852,0,0,0,-0.0980353512377064,0.619424924374218,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.096373593922461,0.489032979231263,0,0,0.400449574123447,0.59396167483282,0,0,0.232384899870873,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0,-0.0980353512377064,0,0,0.362131505485463,0,0.309994278040792,0,0,0.100517959999704,0,0,0,0.114952630199898,0,-0.164091940711217,0.0385728164970545,0,0,-0.0307838127667605,0,0.100517959999704,0,0,0,0,0.100517959999704,0,0,-0.128119866952565,0,0.259581726451477,0,0,0,0,0,0.00452204714238441,0,-0.0192609221291139,0.293787244408094,0,0,0,0.015114937728405,0.0594634046038934,0,-0.0203615237940362,0.0177977916762871,0,0.10149724904795,0.126375462239344,0,0,0,-0.574537965946979,0.235148193530563,0,0,0.033217287268522,-0.131090638560807,0,0,-0.391044581551635,0,-0.0410181272879888,-0.0334311694649865,0,0.100190164648335,0,0,0,0,0,0,0,0.100517959999704,0.309994278040792,0,0,-0.0574934668214365,0.123721408816177,0.0139998008843405,0,0.182087959020526,0,0.159983460009654,0,0,-0.272768195956862,-0.0340468710071302,0.221687205845805,0.393711735089134,0,-0.302389727009913,0.00732114491195025,0.824683227264087,0.268717700219689,-0.147401849371139,-0.189981719549847,-0.00122862902548715,-0.494988709994142,0.22973219467714,0.326411166033769,0.222597391115783,0.0954895465832351,-0.326609165276329,0.765113553736924,0,0.362131505485463,0,0.558168916069911,0,0.152990569640817,0.284265551837598,0.134859362428386,0.0530389564960182,0.222631456258581,0.00151309737383125,-0.475143114713454,0.0107264515431817,0.0315965263346685,-0.00558909854614035,-0.00445180193068251,0,1.19267767490566,0.118504077555163,-0.0144075390952935,0.184141188897386,0.244527783151059,0.000333112489098953,0.30901308647464,0.113743697943158,0,-0.053821622984675,0.0410902408717611,0,0,0.111987173907494,0,0,0,0,0.100517959999704,0.524378982366188,0.215444515317758,0.0771387164852469,0,0.087610022000068,0.117334734134857,0.108131923994118,0,0.113818711055212,0,0.110601003299823,0.380773761372679,0.00760297930017734,0.104738115333783,-0.172415101042871,0.0774019227004796,-0.240306846371211,0.583578318812271,0.274492735586685,0.0659996145640456,0.281394196477096,0.40373781011543,0.242560836844978,-0.0881268324752877,0,-0.88354475051838,-0.0374729859974284,0.148407865049688,-0.187034630086762,0,0.175457338167561,0,0.301260427361368,0,-0.390933151435607,-0.358345792452714,1.05499911024142,0.00259307837236156,0,0.182181593026909,-0.0331942794260496,0.100517959999704,0,0,0.615437969371795,-0.150367083334639,0.295940561003882,-0.111132467864885,-0.0479454771689315,0,0.142008103986322,0,0,0.42951938184213,0.0152569544509314,0.100517959999704,0.0419746757370063,0.0815614905655101,0.223760996002315,0.0661168855855924,0.100517959999704,0,0.644119768842202,0,0.182087959020526,0.326160198557948,0,0.909311912984906,-0.0712383824662293,0.140965877136831,0.262648743357644,0,0.25073299221532,0.0732052262501444,0,-0.131944633006421,0,0,0.246936967159408,-0.116628112990133,0,0,0,0.086820289928959,0,0,0,0,0,0,0.0154926680109236,0.321917118750435,-0.172745371195922,0.615437969371795,-0.0880305421253711,0,0.100517959999704,0,0,0,0,0,0,-1.59233083881968,0.133156857854266,-0.12301741567642,0,0,0,0,0.308523365351768,-0.102718602095019,0,0.276812449163484,0,0.205256119020248,0,0,0.0143769702104931,0,0,0,0,-0.057730457053664,-0.0210054669021709,0,0,0.050258979999852,0.749816869517174,0,0,0,0,-0.00665431786177217,0,0,0.161060374899241,0,-0.153040444075128,0.018936080452863,0,-0.0587662278146575,-0.49521123514766,0.406749002170883,0,0,0.325769259033931,0,0,-0.117286216584243,0,0.489032979231263,0,0,0,0,0,0.100517959999704,0,0.147816993085707,0,0,0,0,0,0,0,0,0,0,0,-0.256991482263049,0.00829390334119402,-0.0640596705171081,0,0,0,0,0,0,0.238017360873718,0.591603870809302,0,0,0.141302959510115,0,0,0.25073299221532,0,0,0.0176070395680211,0,0,0,0,0,0.265139144242857,0,0,0,0,0.78456903745838,0,0,0.770172948884098,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127413906179872,0.601654884227713,0,0.182087959020526,0,0,0,0,0,0.340604671165705,0,0.524246767905243,0,0,-0.113884373708977,0,0,0,-0.104796384789156,0,0.090414962128934,0,0,0,0,0,0.00455855262611755,0,0,0,0,0,0,0,0.100517959999704,0,0,0,0,0.050258979999852,0,0,-0.202858458390789,0,-0.105119556952383,0.0404531873689626,0,0,-0.232628352633041,0,0,0,0,0,0,-0.031340424028527,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.489032979231263,0,0,0,0,0,0,-0.0962259712900034,0,0,0,0,0,0,0,0.0841300627524689,0,0,0.432213958104717,0,0,0,0,0,0,0.410999359101904,-0.102154647080416,-0.0180373432307606,0.100517959999704,0,0,0.224023544561465,0.25073299221532,0,0.0040152572722385,0,0.0337405725808031,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.100517959999704,0,0,0,0,0,0,0,0,0,0,0,0,0.100517959999704,0,0,0,0,0.297386995146718,0,0,0,0,0,0,0,0.970053296004708,0,0,0,0,0.091043979510263,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.182087959020526,0.12536649610766,0,0,0,0,0,0,0.0162476167244357,0.100517959999704,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.328656687392477,0,0,0,-0.0309982706365173,0,0,0,0,0,0,0.100517959999704,0,0.408675155661116,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.100517959999704,0,0,0,0.680873779988847,0,0,0,0,0,0,0,0,0.100517959999704,0,0,0,0,0.05229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| |||
|rna_box=107 | |rna_box=107 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 77: | ||
|rna_weight_ug=36.09625 | |rna_weight_ug=36.09625 | ||
|sample_age=69 | |sample_age=69 | ||
|sample_category=cell lines | |||
|sample_cell_catalog=RCB1904 | |sample_cell_catalog=RCB1904 | ||
|sample_cell_line=MCF7 | |sample_cell_line=MCF7 | ||
| Line 69: | Line 90: | ||
|sample_ethnicity=C | |sample_ethnicity=C | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.36857351159566e-262!GO:0043226;organelle;1.13996125521557e-222!GO:0043229;intracellular organelle;2.86493357060693e-222!GO:0043231;intracellular membrane-bound organelle;2.86493357060693e-222!GO:0043227;membrane-bound organelle;5.08879463952875e-222!GO:0005737;cytoplasm;1.39518588880318e-162!GO:0044422;organelle part;3.5680980594362e-148!GO:0044446;intracellular organelle part;6.27146056631992e-147!GO:0044444;cytoplasmic part;1.43374819794714e-115!GO:0005634;nucleus;2.53773844999791e-109!GO:0032991;macromolecular complex;9.41990665081325e-99!GO:0044237;cellular metabolic process;2.70937026447191e-95!GO:0044238;primary metabolic process;7.80061073627328e-94!GO:0043170;macromolecule metabolic process;1.69781208521354e-89!GO:0030529;ribonucleoprotein complex;2.82751509929474e-86!GO:0044428;nuclear part;2.99335943320559e-80!GO:0003723;RNA binding;5.35841134580625e-76!GO:0043233;organelle lumen;3.53698516308523e-75!GO:0031974;membrane-enclosed lumen;3.53698516308523e-75!GO:0005515;protein binding;6.03581886219269e-72!GO:0005739;mitochondrion;4.92052973037008e-68!GO:0043283;biopolymer metabolic process;2.18735892671503e-60!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;4.10494797243873e-56!GO:0010467;gene expression;9.58737203820602e-56!GO:0006396;RNA processing;3.74808565930341e-52!GO:0031981;nuclear lumen;1.14182206676902e-50!GO:0005840;ribosome;5.86535570619892e-50!GO:0043234;protein complex;4.4084048128895e-49!GO:0015031;protein transport;3.14381959258341e-47!GO:0033036;macromolecule localization;3.66454097198686e-47!GO:0016043;cellular component organization and biogenesis;2.06134212171114e-46!GO:0031090;organelle membrane;2.22747838539279e-46!GO:0006412;translation;1.36908913275443e-45!GO:0016071;mRNA metabolic process;4.38032697633695e-44!GO:0044429;mitochondrial part;1.31168623721725e-43!GO:0003735;structural constituent of ribosome;5.82544826455016e-43!GO:0008104;protein localization;1.34754006294914e-42!GO:0045184;establishment of protein localization;1.1839168231659e-41!GO:0019538;protein metabolic process;2.90474365286124e-41!GO:0031967;organelle envelope;1.10602203894924e-39!GO:0031975;envelope;1.89361724758752e-39!GO:0006259;DNA metabolic process;4.92354612333518e-39!GO:0008380;RNA splicing;2.8705851387119e-38!GO:0043228;non-membrane-bound organelle;4.23841594032022e-38!GO:0043232;intracellular non-membrane-bound organelle;4.23841594032022e-38!GO:0003676;nucleic acid binding;6.1944332876772e-38!GO:0033279;ribosomal subunit;6.68105481997265e-38!GO:0006397;mRNA processing;2.88189935436391e-37!GO:0006996;organelle organization and biogenesis;9.3864861452469e-37!GO:0044260;cellular macromolecule metabolic process;1.13159344599328e-36!GO:0044267;cellular protein metabolic process;1.51541886774828e-36!GO:0046907;intracellular transport;1.93465831803734e-34!GO:0065003;macromolecular complex assembly;6.28731993665416e-34!GO:0005829;cytosol;6.77075818322574e-34!GO:0044249;cellular biosynthetic process;4.52247897940089e-33!GO:0000166;nucleotide binding;3.4842596940973e-31!GO:0009059;macromolecule biosynthetic process;9.52239496230191e-31!GO:0009058;biosynthetic process;1.42918260925301e-30!GO:0016070;RNA metabolic process;1.88356610346928e-30!GO:0005654;nucleoplasm;2.12624144676794e-30!GO:0022607;cellular component assembly;1.29659153891425e-29!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.40080907993918e-29!GO:0019866;organelle inner membrane;1.91374931220265e-28!GO:0005740;mitochondrial envelope;2.87333272845821e-28!GO:0006886;intracellular protein transport;5.06350472664698e-28!GO:0005681;spliceosome;1.63447567464218e-27!GO:0005830;cytosolic ribosome (sensu Eukaryota);7.6840137460468e-27!GO:0031966;mitochondrial membrane;1.31005313159013e-26!GO:0005743;mitochondrial inner membrane;1.63466948466592e-26!GO:0007049;cell cycle;4.36346816493099e-25!GO:0044451;nucleoplasm part;9.61319843608253e-25!GO:0051649;establishment of cellular localization;4.4405463277686e-23!GO:0016462;pyrophosphatase activity;4.4405463277686e-23!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;4.64194531868052e-23!GO:0016817;hydrolase activity, acting on acid anhydrides;4.76067995648141e-23!GO:0017111;nucleoside-triphosphatase activity;1.06990556643153e-22!GO:0044445;cytosolic part;1.07945581838329e-22!GO:0051641;cellular localization;1.6727407443963e-22!GO:0032553;ribonucleotide binding;3.46118136034033e-22!GO:0032555;purine ribonucleotide binding;3.46118136034033e-22!GO:0006119;oxidative phosphorylation;6.1988676342642e-22!GO:0005730;nucleolus;5.14642532306822e-21!GO:0051276;chromosome organization and biogenesis;6.35516345555547e-21!GO:0017076;purine nucleotide binding;9.73724017408263e-21!GO:0044455;mitochondrial membrane part;2.43612155752276e-20!GO:0016874;ligase activity;7.8540127306643e-20!GO:0006512;ubiquitin cycle;9.3446128396056e-20!GO:0008134;transcription factor binding;1.48478160848886e-19!GO:0015934;large ribosomal subunit;1.63318465749882e-19!GO:0006974;response to DNA damage stimulus;1.95221619756756e-19!GO:0015935;small ribosomal subunit;2.40993469949934e-19!GO:0005524;ATP binding;2.41132524568292e-19!GO:0032559;adenyl ribonucleotide binding;2.50818699484287e-19!GO:0031980;mitochondrial lumen;9.07458181412465e-19!GO:0005759;mitochondrial matrix;9.07458181412465e-19!GO:0005694;chromosome;1.01122424311113e-18!GO:0022618;protein-RNA complex assembly;1.11560400156191e-18!GO:0006325;establishment and/or maintenance of chromatin architecture;2.54169961432637e-18!GO:0006457;protein folding;3.07997745978522e-18!GO:0012505;endomembrane system;4.45282546341193e-18!GO:0030554;adenyl nucleotide binding;1.01768730717155e-17!GO:0006323;DNA packaging;1.46704617004718e-17!GO:0044265;cellular macromolecule catabolic process;1.95925482281972e-17!GO:0022402;cell cycle process;3.1625721240932e-17!GO:0016887;ATPase activity;3.68750604327845e-17!GO:0051603;proteolysis involved in cellular protein catabolic process;4.25830957850958e-17!GO:0006281;DNA repair;4.46850561540748e-17!GO:0019941;modification-dependent protein catabolic process;7.83571928159123e-17!GO:0043632;modification-dependent macromolecule catabolic process;7.83571928159123e-17!GO:0008135;translation factor activity, nucleic acid binding;8.71248016718615e-17!GO:0043285;biopolymer catabolic process;1.02618186831334e-16!GO:0044257;cellular protein catabolic process;1.05497392253905e-16!GO:0006511;ubiquitin-dependent protein catabolic process;1.27224110217056e-16!GO:0044427;chromosomal part;1.93098193989235e-16!GO:0042623;ATPase activity, coupled;2.37176184769846e-16!GO:0005746;mitochondrial respiratory chain;5.3683391468659e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;6.68339561481182e-15!GO:0009719;response to endogenous stimulus;1.1214630495511e-14!GO:0048770;pigment granule;1.16405054555619e-14!GO:0042470;melanosome;1.16405054555619e-14!GO:0050136;NADH dehydrogenase (quinone) activity;1.16902289592029e-14!GO:0003954;NADH dehydrogenase activity;1.16902289592029e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.16902289592029e-14!GO:0000278;mitotic cell cycle;1.81520771076931e-14!GO:0000398;nuclear mRNA splicing, via spliceosome;1.99792151608691e-14!GO:0000375;RNA splicing, via transesterification reactions;1.99792151608691e-14!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.99792151608691e-14!GO:0031965;nuclear membrane;2.56808142687573e-14!GO:0009057;macromolecule catabolic process;2.81387719678317e-14!GO:0051082;unfolded protein binding;3.14767550896597e-14!GO:0043412;biopolymer modification;3.27148755221247e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);5.08059222806619e-14!GO:0005761;mitochondrial ribosome;8.12381636184324e-14!GO:0000313;organellar ribosome;8.12381636184324e-14!GO:0044248;cellular catabolic process;2.03912617345752e-13!GO:0006260;DNA replication;2.2318115143388e-13!GO:0048193;Golgi vesicle transport;2.84494340020884e-13!GO:0030163;protein catabolic process;3.24118310901953e-13!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);4.14025785987596e-13!GO:0051301;cell division;4.66343850862514e-13!GO:0051186;cofactor metabolic process;5.85517752408729e-13!GO:0006366;transcription from RNA polymerase II promoter;6.30324543233951e-13!GO:0000502;proteasome complex (sensu Eukaryota);7.80314328854183e-13!GO:0006333;chromatin assembly or disassembly;8.33594989203441e-13!GO:0006605;protein targeting;8.33594989203441e-13!GO:0004386;helicase activity;1.58803050804584e-12!GO:0005635;nuclear envelope;1.65116990043441e-12!GO:0016568;chromatin modification;1.67784593503879e-12!GO:0005794;Golgi apparatus;1.68151178723901e-12!GO:0003712;transcription cofactor activity;1.71259976035301e-12!GO:0042775;organelle ATP synthesis coupled electron transport;1.77219921997986e-12!GO:0042773;ATP synthesis coupled electron transport;1.77219921997986e-12!GO:0030964;NADH dehydrogenase complex (quinone);1.86456564588482e-12!GO:0045271;respiratory chain complex I;1.86456564588482e-12!GO:0005747;mitochondrial respiratory chain complex I;1.86456564588482e-12!GO:0016604;nuclear body;2.46710137643516e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;6.15279235685493e-12!GO:0008026;ATP-dependent helicase activity;6.40209134708964e-12!GO:0042254;ribosome biogenesis and assembly;7.58535390398115e-12!GO:0006464;protein modification process;9.62388531014475e-12!GO:0044453;nuclear membrane part;1.00119135696009e-11!GO:0003743;translation initiation factor activity;1.12347981441375e-11!GO:0044432;endoplasmic reticulum part;1.12358233398309e-11!GO:0000087;M phase of mitotic cell cycle;1.2096230007831e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.42865738687762e-11!GO:0006913;nucleocytoplasmic transport;1.43555298368402e-11!GO:0000785;chromatin;1.4420874416678e-11!GO:0016192;vesicle-mediated transport;1.66084314626368e-11!GO:0006399;tRNA metabolic process;1.75012125989923e-11!GO:0022403;cell cycle phase;2.44422327449847e-11!GO:0007067;mitosis;2.45968128301759e-11!GO:0051169;nuclear transport;4.02780075264632e-11!GO:0005783;endoplasmic reticulum;4.30951804006036e-11!GO:0043687;post-translational protein modification;5.06451885255911e-11!GO:0006732;coenzyme metabolic process;6.26793558187523e-11!GO:0006413;translational initiation;6.81697753008001e-11!GO:0006446;regulation of translational initiation;1.12294545577919e-10!GO:0008565;protein transporter activity;1.7145081560719e-10!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.78960183135779e-10!GO:0016607;nuclear speck;2.97533997539329e-10!GO:0005643;nuclear pore;3.14733189379454e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;3.29806317621619e-10!GO:0000279;M phase;5.1679296718542e-10!GO:0065004;protein-DNA complex assembly;5.66177173340158e-10!GO:0015630;microtubule cytoskeleton;5.94104612185119e-10!GO:0050657;nucleic acid transport;5.94104612185119e-10!GO:0051236;establishment of RNA localization;5.94104612185119e-10!GO:0050658;RNA transport;5.94104612185119e-10!GO:0006403;RNA localization;6.89222772927465e-10!GO:0008639;small protein conjugating enzyme activity;9.78937660722482e-10!GO:0019829;cation-transporting ATPase activity;9.90901140654979e-10!GO:0019787;small conjugating protein ligase activity;1.58661345235771e-09!GO:0004842;ubiquitin-protein ligase activity;1.74212632196678e-09!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.87506174532855e-09!GO:0006461;protein complex assembly;2.34704443634142e-09!GO:0050794;regulation of cellular process;2.52575978340596e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;3.97172463882174e-09!GO:0005789;endoplasmic reticulum membrane;4.5751729548739e-09!GO:0032446;protein modification by small protein conjugation;4.6400707418736e-09!GO:0051726;regulation of cell cycle;7.77165605665726e-09!GO:0015986;ATP synthesis coupled proton transport;8.78777115645731e-09!GO:0015985;energy coupled proton transport, down electrochemical gradient;8.78777115645731e-09!GO:0019222;regulation of metabolic process;1.20237196972366e-08!GO:0016564;transcription repressor activity;1.24806751185e-08!GO:0000074;regulation of progression through cell cycle;1.33818224072916e-08!GO:0006163;purine nucleotide metabolic process;1.36981723926968e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.50305548719846e-08!GO:0004812;aminoacyl-tRNA ligase activity;1.50305548719846e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.50305548719846e-08!GO:0016567;protein ubiquitination;1.58547897445246e-08!GO:0016881;acid-amino acid ligase activity;1.67297304284925e-08!GO:0006164;purine nucleotide biosynthetic process;1.7571912528216e-08!GO:0003697;single-stranded DNA binding;2.25687387572931e-08!GO:0017038;protein import;2.31448119201899e-08!GO:0043566;structure-specific DNA binding;2.56187570502836e-08!GO:0046930;pore complex;2.69375063775307e-08!GO:0009259;ribonucleotide metabolic process;2.86629754107594e-08!GO:0051028;mRNA transport;2.91289101307481e-08!GO:0005768;endosome;3.16936840516074e-08!GO:0043038;amino acid activation;3.64745537544738e-08!GO:0006418;tRNA aminoacylation for protein translation;3.64745537544738e-08!GO:0043039;tRNA aminoacylation;3.64745537544738e-08!GO:0051188;cofactor biosynthetic process;3.86460444280108e-08!GO:0000245;spliceosome assembly;4.18566934698338e-08!GO:0015078;hydrogen ion transmembrane transporter activity;4.18566934698338e-08!GO:0065002;intracellular protein transport across a membrane;4.23839715014496e-08!GO:0005793;ER-Golgi intermediate compartment;5.21940702272513e-08!GO:0009150;purine ribonucleotide metabolic process;6.47444647672428e-08!GO:0009142;nucleoside triphosphate biosynthetic process;6.71921918545765e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;6.71921918545765e-08!GO:0009260;ribonucleotide biosynthetic process;7.60574365575766e-08!GO:0009152;purine ribonucleotide biosynthetic process;8.3192893370156e-08!GO:0012501;programmed cell death;8.3192893370156e-08!GO:0006754;ATP biosynthetic process;8.88482091291706e-08!GO:0006753;nucleoside phosphate metabolic process;8.88482091291706e-08!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;9.16327040713459e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;9.2963093416238e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;9.2963093416238e-08!GO:0006915;apoptosis;1.48486838820495e-07!GO:0006334;nucleosome assembly;1.60701445912017e-07!GO:0009199;ribonucleoside triphosphate metabolic process;1.6109988829851e-07!GO:0009141;nucleoside triphosphate metabolic process;1.68699283747226e-07!GO:0009055;electron carrier activity;1.78535796599745e-07!GO:0031497;chromatin assembly;2.2320145319767e-07!GO:0005667;transcription factor complex;2.2320145319767e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;2.24448530018166e-07!GO:0009144;purine nucleoside triphosphate metabolic process;2.24448530018166e-07!GO:0048475;coated membrane;2.25177279664486e-07!GO:0030117;membrane coat;2.25177279664486e-07!GO:0030532;small nuclear ribonucleoprotein complex;2.5981721407111e-07!GO:0006261;DNA-dependent DNA replication;2.5981721407111e-07!GO:0006364;rRNA processing;2.60929183119976e-07!GO:0031324;negative regulation of cellular metabolic process;3.08452375472882e-07!GO:0009108;coenzyme biosynthetic process;3.16569090717581e-07!GO:0046034;ATP metabolic process;3.61044274631565e-07!GO:0044431;Golgi apparatus part;3.68287807973156e-07!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.70147424070996e-07!GO:0003714;transcription corepressor activity;3.90444399768396e-07!GO:0016469;proton-transporting two-sector ATPase complex;4.24320284801721e-07!GO:0016072;rRNA metabolic process;4.74736776193672e-07!GO:0000151;ubiquitin ligase complex;5.09331692394663e-07!GO:0006350;transcription;5.25896928496978e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;5.30794670685559e-07!GO:0005813;centrosome;5.72191059832045e-07!GO:0009056;catabolic process;5.80036074856557e-07!GO:0008219;cell death;7.34550582657417e-07!GO:0016265;death;7.34550582657417e-07!GO:0031202;RNA splicing factor activity, transesterification mechanism;7.99040445659066e-07!GO:0006793;phosphorus metabolic process;8.7169272721328e-07!GO:0006796;phosphate metabolic process;8.7169272721328e-07!GO:0045259;proton-transporting ATP synthase complex;9.28884296664388e-07!GO:0007005;mitochondrion organization and biogenesis;1.01656399099675e-06!GO:0005815;microtubule organizing center;1.01656399099675e-06!GO:0006357;regulation of transcription from RNA polymerase II promoter;1.192585689188e-06!GO:0030120;vesicle coat;1.26513736391939e-06!GO:0030662;coated vesicle membrane;1.26513736391939e-06!GO:0031323;regulation of cellular metabolic process;1.32158169965828e-06!GO:0016563;transcription activator activity;1.33330694307706e-06!GO:0043623;cellular protein complex assembly;1.51641029351169e-06!GO:0003724;RNA helicase activity;1.52191136048035e-06!GO:0009060;aerobic respiration;1.97797035534468e-06!GO:0016740;transferase activity;2.10914065340793e-06!GO:0006752;group transfer coenzyme metabolic process;2.20072127167659e-06!GO:0003682;chromatin binding;2.4046163247613e-06!GO:0009892;negative regulation of metabolic process;2.47264952626559e-06!GO:0016481;negative regulation of transcription;2.69187622687785e-06!GO:0005819;spindle;2.70299334824229e-06!GO:0006888;ER to Golgi vesicle-mediated transport;2.97636975232235e-06!GO:0016779;nucleotidyltransferase activity;3.03204925799701e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;3.95167689053245e-06!GO:0003713;transcription coactivator activity;4.17962923145044e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;4.34563348478148e-06!GO:0016787;hydrolase activity;6.65711027439146e-06!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;6.91720355078686e-06!GO:0006402;mRNA catabolic process;9.29005755992424e-06!GO:0016023;cytoplasmic membrane-bound vesicle;9.94004218368411e-06!GO:0051170;nuclear import;1.06481892112258e-05!GO:0016310;phosphorylation;1.09090802387349e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;1.1223760895631e-05!GO:0031988;membrane-bound vesicle;1.14141807417014e-05!GO:0051168;nuclear export;1.16179374177696e-05!GO:0051427;hormone receptor binding;1.16498166974179e-05!GO:0005798;Golgi-associated vesicle;1.25154093469345e-05!GO:0010468;regulation of gene expression;1.26170672325698e-05!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.31932127161345e-05!GO:0006606;protein import into nucleus;1.76182341272898e-05!GO:0050789;regulation of biological process;1.76980179210847e-05!GO:0007264;small GTPase mediated signal transduction;1.79879477328143e-05!GO:0005769;early endosome;1.88190604684055e-05!GO:0045333;cellular respiration;2.21023643157823e-05!GO:0003729;mRNA binding;2.25384990936842e-05!GO:0048471;perinuclear region of cytoplasm;2.38726261436399e-05!GO:0016363;nuclear matrix;2.5560848850299e-05!GO:0006099;tricarboxylic acid cycle;2.73096822020109e-05!GO:0046356;acetyl-CoA catabolic process;2.73096822020109e-05!GO:0035257;nuclear hormone receptor binding;2.75869359269289e-05!GO:0032774;RNA biosynthetic process;2.86504457733731e-05!GO:0005525;GTP binding;3.18869718124572e-05!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;3.23387688802072e-05!GO:0015399;primary active transmembrane transporter activity;3.23387688802072e-05!GO:0006351;transcription, DNA-dependent;3.35792330450975e-05!GO:0000314;organellar small ribosomal subunit;3.59951842239514e-05!GO:0005763;mitochondrial small ribosomal subunit;3.59951842239514e-05!GO:0044440;endosomal part;3.59951842239514e-05!GO:0010008;endosome membrane;3.59951842239514e-05!GO:0000775;chromosome, pericentric region;3.77631715753124e-05!GO:0031982;vesicle;3.97833369343151e-05!GO:0005762;mitochondrial large ribosomal subunit;4.150656379381e-05!GO:0000315;organellar large ribosomal subunit;4.150656379381e-05!GO:0006084;acetyl-CoA metabolic process;4.31944663063936e-05!GO:0009117;nucleotide metabolic process;4.40725579328217e-05!GO:0031410;cytoplasmic vesicle;4.65339649301485e-05!GO:0051187;cofactor catabolic process;4.88680741547882e-05!GO:0000139;Golgi membrane;4.88680741547882e-05!GO:0008094;DNA-dependent ATPase activity;5.0247764598444e-05!GO:0003924;GTPase activity;5.18107401081312e-05!GO:0006613;cotranslational protein targeting to membrane;5.33167826313048e-05!GO:0048523;negative regulation of cellular process;6.26645401881546e-05!GO:0009109;coenzyme catabolic process;6.4383505100251e-05!GO:0015992;proton transport;7.10731500588129e-05!GO:0008168;methyltransferase activity;7.35278315592165e-05!GO:0008186;RNA-dependent ATPase activity;7.40142808440674e-05!GO:0031072;heat shock protein binding;7.44358687443224e-05!GO:0016741;transferase activity, transferring one-carbon groups;7.47808640056291e-05!GO:0006401;RNA catabolic process;8.39732978224926e-05!GO:0006818;hydrogen transport;8.86976997138727e-05!GO:0007051;spindle organization and biogenesis;9.07914371045483e-05!GO:0005874;microtubule;0.000109667562087836!GO:0008033;tRNA processing;0.000113308121210307!GO:0005657;replication fork;0.000118128151294893!GO:0005770;late endosome;0.000124860420206031!GO:0051329;interphase of mitotic cell cycle;0.000124883957501499!GO:0003899;DNA-directed RNA polymerase activity;0.00013291347921451!GO:0051246;regulation of protein metabolic process;0.000139054131918127!GO:0008287;protein serine/threonine phosphatase complex;0.000153132681200219!GO:0003690;double-stranded DNA binding;0.000167979232668975!GO:0003746;translation elongation factor activity;0.000174379594766476!GO:0043492;ATPase activity, coupled to movement of substances;0.000174379594766476!GO:0045449;regulation of transcription;0.000179694233239429!GO:0043021;ribonucleoprotein binding;0.000189511760440378!GO:0042802;identical protein binding;0.000213955721387818!GO:0019899;enzyme binding;0.000221513292330881!GO:0004004;ATP-dependent RNA helicase activity;0.000230509024120569!GO:0006839;mitochondrial transport;0.000230509024120569!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000263187898355776!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000270386723037693!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.000276098073767915!GO:0000075;cell cycle checkpoint;0.000278382200223854!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000279655235453905!GO:0045786;negative regulation of progression through cell cycle;0.000293213173528032!GO:0008022;protein C-terminus binding;0.000353367101682304!GO:0032561;guanyl ribonucleotide binding;0.000354772512627547!GO:0019001;guanyl nucleotide binding;0.000354772512627547!GO:0045892;negative regulation of transcription, DNA-dependent;0.000359954680519495!GO:0035258;steroid hormone receptor binding;0.000409163113837657!GO:0003684;damaged DNA binding;0.00046263293616384!GO:0006383;transcription from RNA polymerase III promoter;0.000478419038106383!GO:0006414;translational elongation;0.000500067076225905!GO:0044452;nucleolar part;0.000500654016763552!GO:0046983;protein dimerization activity;0.000523656613429544!GO:0005048;signal sequence binding;0.000543867539447518!GO:0006916;anti-apoptosis;0.000550606209736408!GO:0003677;DNA binding;0.000609320084399592!GO:0043681;protein import into mitochondrion;0.000610389620775979!GO:0000786;nucleosome;0.000621044382833781!GO:0051325;interphase;0.000641482098079875!GO:0051252;regulation of RNA metabolic process;0.000671459350183899!GO:0006284;base-excision repair;0.000674359399981665!GO:0043069;negative regulation of programmed cell death;0.000700837908284975!GO:0043067;regulation of programmed cell death;0.000713009359202154!GO:0031252;leading edge;0.000722545557979053!GO:0005839;proteasome core complex (sensu Eukaryota);0.00073824917282813!GO:0051087;chaperone binding;0.000774183299688935!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000778297683821252!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000820531063984219!GO:0042981;regulation of apoptosis;0.000845043676790849!GO:0006405;RNA export from nucleus;0.000871759706382187!GO:0005885;Arp2/3 protein complex;0.000888603633149024!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000904903299750667!GO:0007017;microtubule-based process;0.00097461223238337!GO:0033116;ER-Golgi intermediate compartment membrane;0.00097461223238337!GO:0032508;DNA duplex unwinding;0.00104355037121379!GO:0032392;DNA geometric change;0.00104355037121379!GO:0009165;nucleotide biosynthetic process;0.00106483051713913!GO:0003678;DNA helicase activity;0.00111316162617132!GO:0008250;oligosaccharyl transferase complex;0.0011169267924625!GO:0006302;double-strand break repair;0.001148529668507!GO:0003711;transcription elongation regulator activity;0.00121593415852698!GO:0006355;regulation of transcription, DNA-dependent;0.00122243786049111!GO:0043414;biopolymer methylation;0.00126865833162292!GO:0048519;negative regulation of biological process;0.00128383121929439!GO:0051789;response to protein stimulus;0.00129182146612894!GO:0006986;response to unfolded protein;0.00129182146612894!GO:0045454;cell redox homeostasis;0.00130421443315611!GO:0006891;intra-Golgi vesicle-mediated transport;0.00131976472411272!GO:0004674;protein serine/threonine kinase activity;0.00133179230790544!GO:0043066;negative regulation of apoptosis;0.00140372161555215!GO:0005788;endoplasmic reticulum lumen;0.00140903995929298!GO:0000049;tRNA binding;0.00144259492123792!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00149402169276453!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00149402169276453!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00150218902900008!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00150218902900008!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00150218902900008!GO:0008654;phospholipid biosynthetic process;0.00153994027642382!GO:0030658;transport vesicle membrane;0.00163003567701332!GO:0030867;rough endoplasmic reticulum membrane;0.0016311582116249!GO:0051920;peroxiredoxin activity;0.00169835894248674!GO:0004298;threonine endopeptidase activity;0.00170037952160364!GO:0005773;vacuole;0.00175659806637939!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.00175794275764011!GO:0022890;inorganic cation transmembrane transporter activity;0.00177132908763986!GO:0007010;cytoskeleton organization and biogenesis;0.00178097890882767!GO:0030118;clathrin coat;0.00178097890882767!GO:0004576;oligosaccharyl transferase activity;0.00179069305673284!GO:0006730;one-carbon compound metabolic process;0.00183415447193052!GO:0003702;RNA polymerase II transcription factor activity;0.00184225997109561!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00185372801410625!GO:0008139;nuclear localization sequence binding;0.00185372801410625!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00196773121172258!GO:0006268;DNA unwinding during replication;0.00197922669338476!GO:0000792;heterochromatin;0.00202250993415682!GO:0016853;isomerase activity;0.00215390898451875!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.00215390898451875!GO:0000059;protein import into nucleus, docking;0.00219156701269331!GO:0030119;AP-type membrane coat adaptor complex;0.00221341996294207!GO:0019867;outer membrane;0.00239798588823519!GO:0045045;secretory pathway;0.00245734334583522!GO:0006338;chromatin remodeling;0.00246404305879992!GO:0032259;methylation;0.00246404305879992!GO:0031968;organelle outer membrane;0.00256446105411465!GO:0043488;regulation of mRNA stability;0.00266206333948538!GO:0043487;regulation of RNA stability;0.00266206333948538!GO:0016859;cis-trans isomerase activity;0.00275099027895214!GO:0005684;U2-dependent spliceosome;0.00275730258498676!GO:0007006;mitochondrial membrane organization and biogenesis;0.00279952689016378!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00281005138032272!GO:0016272;prefoldin complex;0.00286962327667937!GO:0000776;kinetochore;0.00315667270075477!GO:0030663;COPI coated vesicle membrane;0.0033030742979754!GO:0030126;COPI vesicle coat;0.0033030742979754!GO:0030660;Golgi-associated vesicle membrane;0.0033030742979754!GO:0015980;energy derivation by oxidation of organic compounds;0.00332887080817682!GO:0015631;tubulin binding;0.00352828755759924!GO:0006626;protein targeting to mitochondrion;0.00364766366804359!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00364838722511209!GO:0015002;heme-copper terminal oxidase activity;0.00364838722511209!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00364838722511209!GO:0004129;cytochrome-c oxidase activity;0.00364838722511209!GO:0006091;generation of precursor metabolites and energy;0.00373771750275007!GO:0016251;general RNA polymerase II transcription factor activity;0.00387032276742767!GO:0008276;protein methyltransferase activity;0.00387193036065044!GO:0030137;COPI-coated vesicle;0.00392088078743361!GO:0030131;clathrin adaptor complex;0.00405335380536642!GO:0030133;transport vesicle;0.00411414598982258!GO:0007265;Ras protein signal transduction;0.0041485282026691!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00421084101863908!GO:0005741;mitochondrial outer membrane;0.0043310603154847!GO:0007052;mitotic spindle organization and biogenesis;0.00471416024182385!GO:0000323;lytic vacuole;0.00472576669397622!GO:0005764;lysosome;0.00472576669397622!GO:0006352;transcription initiation;0.00473803652085851!GO:0048487;beta-tubulin binding;0.00485561839295614!GO:0004722;protein serine/threonine phosphatase activity;0.00494186252627853!GO:0048500;signal recognition particle;0.00508848075973754!GO:0016584;nucleosome positioning;0.00526336807742017!GO:0046483;heterocycle metabolic process;0.00529154225273537!GO:0047485;protein N-terminus binding;0.00546125340079053!GO:0016197;endosome transport;0.00589164383263858!GO:0000209;protein polyubiquitination;0.00614665761767382!GO:0051052;regulation of DNA metabolic process;0.00628690544805009!GO:0030880;RNA polymerase complex;0.00643697073352523!GO:0005669;transcription factor TFIID complex;0.00654755919385636!GO:0040029;regulation of gene expression, epigenetic;0.00657963153790772!GO:0019783;small conjugating protein-specific protease activity;0.00666220972174868!GO:0006612;protein targeting to membrane;0.00674205463033157!GO:0005637;nuclear inner membrane;0.00703829425328685!GO:0018196;peptidyl-asparagine modification;0.00713106901784998!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00713106901784998!GO:0005905;coated pit;0.00724667943170922!GO:0008601;protein phosphatase type 2A regulator activity;0.0073909596300077!GO:0030518;steroid hormone receptor signaling pathway;0.0073909596300077!GO:0006354;RNA elongation;0.00799193623787388!GO:0005853;eukaryotic translation elongation factor 1 complex;0.00804128282835534!GO:0030384;phosphoinositide metabolic process;0.00807468805722358!GO:0006270;DNA replication initiation;0.00821022893751449!GO:0006376;mRNA splice site selection;0.0084831966762521!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0084831966762521!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00858364729486647!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.00864849140970677!GO:0006607;NLS-bearing substrate import into nucleus;0.00865870304204379!GO:0004843;ubiquitin-specific protease activity;0.0087510260372331!GO:0006611;protein export from nucleus;0.00933936883118102!GO:0006672;ceramide metabolic process;0.00942094220942242!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.00999479978569754!GO:0031124;mRNA 3'-end processing;0.010082720030562!GO:0016491;oxidoreductase activity;0.0101008622198869!GO:0006650;glycerophospholipid metabolic process;0.0101802137995852!GO:0043022;ribosome binding;0.0102978508699678!GO:0000123;histone acetyltransferase complex;0.0105411782110503!GO:0065007;biological regulation;0.0107590001865699!GO:0008017;microtubule binding;0.0111525773899886!GO:0008312;7S RNA binding;0.0113419501600215!GO:0008361;regulation of cell size;0.0113465946430087!GO:0031625;ubiquitin protein ligase binding;0.0120969297380132!GO:0065009;regulation of a molecular function;0.0121370233834716!GO:0030134;ER to Golgi transport vesicle;0.0122320615315616!GO:0000159;protein phosphatase type 2A complex;0.0122971212516607!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0123404487864433!GO:0009083;branched chain family amino acid catabolic process;0.0123569831693562!GO:0009081;branched chain family amino acid metabolic process;0.0126280854862304!GO:0031901;early endosome membrane;0.0126280854862304!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.013124597928607!GO:0045047;protein targeting to ER;0.013124597928607!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0133161501414952!GO:0000428;DNA-directed RNA polymerase complex;0.0133161501414952!GO:0006892;post-Golgi vesicle-mediated transport;0.0136900438544907!GO:0007059;chromosome segregation;0.0137637135836852!GO:0043284;biopolymer biosynthetic process;0.0138626676305848!GO:0046474;glycerophospholipid biosynthetic process;0.0139384291752321!GO:0005832;chaperonin-containing T-complex;0.0139722762027176!GO:0005795;Golgi stack;0.0140649166862075!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0142091468675241!GO:0016044;membrane organization and biogenesis;0.0142281397905905!GO:0005875;microtubule associated complex;0.0144628804658117!GO:0004003;ATP-dependent DNA helicase activity;0.014529110802705!GO:0000118;histone deacetylase complex;0.0145461406649005!GO:0043189;H4/H2A histone acetyltransferase complex;0.0150751810054227!GO:0004518;nuclease activity;0.0152694220017051!GO:0007050;cell cycle arrest;0.0152694220017051!GO:0004221;ubiquitin thiolesterase activity;0.0153534843696862!GO:0030176;integral to endoplasmic reticulum membrane;0.0154204203488634!GO:0016301;kinase activity;0.0155405843390201!GO:0046519;sphingoid metabolic process;0.0156014474819666!GO:0031628;opioid receptor binding;0.0156424183697962!GO:0031852;mu-type opioid receptor binding;0.0156424183697962!GO:0046489;phosphoinositide biosynthetic process;0.0157720903814344!GO:0030127;COPII vesicle coat;0.0157894816397417!GO:0012507;ER to Golgi transport vesicle membrane;0.0157894816397417!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0159905983228978!GO:0016126;sterol biosynthetic process;0.0160072377576965!GO:0006289;nucleotide-excision repair;0.0160985872061943!GO:0016049;cell growth;0.0170783490139111!GO:0005083;small GTPase regulator activity;0.0170877419071387!GO:0030132;clathrin coat of coated pit;0.0171609952368124!GO:0030027;lamellipodium;0.0171694021215304!GO:0006310;DNA recombination;0.0172882183349206!GO:0000228;nuclear chromosome;0.0173277919564588!GO:0006595;polyamine metabolic process;0.0175298397825455!GO:0016311;dephosphorylation;0.0179298723376289!GO:0051287;NAD binding;0.017953835425191!GO:0016790;thiolester hydrolase activity;0.0185115132962308!GO:0043596;nuclear replication fork;0.0186640673530053!GO:0001558;regulation of cell growth;0.0192405782880128!GO:0005869;dynactin complex;0.0195428361622683!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0195745584521959!GO:0031123;RNA 3'-end processing;0.0196711532800305!GO:0022415;viral reproductive process;0.0197607843301979!GO:0030659;cytoplasmic vesicle membrane;0.019815585008999!GO:0042770;DNA damage response, signal transduction;0.0202361647925997!GO:0008286;insulin receptor signaling pathway;0.0208879036972097!GO:0006406;mRNA export from nucleus;0.0212458551440822!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0221766144799816!GO:0031371;ubiquitin conjugating enzyme complex;0.0222143041938023!GO:0030036;actin cytoskeleton organization and biogenesis;0.022258794110851!GO:0050681;androgen receptor binding;0.0230178742799124!GO:0030521;androgen receptor signaling pathway;0.0232486151911381!GO:0006082;organic acid metabolic process;0.0243882702407369!GO:0016279;protein-lysine N-methyltransferase activity;0.0245024577683294!GO:0018024;histone-lysine N-methyltransferase activity;0.0245024577683294!GO:0016278;lysine N-methyltransferase activity;0.0245024577683294!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.0246921073678485!GO:0035267;NuA4 histone acetyltransferase complex;0.0253424702973282!GO:0019752;carboxylic acid metabolic process;0.0253906950755362!GO:0042054;histone methyltransferase activity;0.0254232285663938!GO:0030911;TPR domain binding;0.0255128159062546!GO:0044433;cytoplasmic vesicle part;0.0255990001495488!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.0261423460127646!GO:0004527;exonuclease activity;0.0269010260749492!GO:0030331;estrogen receptor binding;0.0276113933091188!GO:0032200;telomere organization and biogenesis;0.0277843045570404!GO:0000723;telomere maintenance;0.0277843045570404!GO:0000781;chromosome, telomeric region;0.0281244050548019!GO:0000287;magnesium ion binding;0.0284686999329177!GO:0004721;phosphoprotein phosphatase activity;0.0285206683798115!GO:0003756;protein disulfide isomerase activity;0.0288707559225777!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0288707559225777!GO:0006378;mRNA polyadenylation;0.0291734169309431!GO:0005791;rough endoplasmic reticulum;0.0296869935682495!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0301671787861469!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0303082889182513!GO:0000086;G2/M transition of mitotic cell cycle;0.0303552625061708!GO:0006520;amino acid metabolic process;0.0303629389313632!GO:0006356;regulation of transcription from RNA polymerase I promoter;0.0305530060855195!GO:0030125;clathrin vesicle coat;0.0305530060855195!GO:0030665;clathrin coated vesicle membrane;0.0305530060855195!GO:0007569;cell aging;0.0311021563984767!GO:0006769;nicotinamide metabolic process;0.0318576218828464!GO:0005876;spindle microtubule;0.0325466291700332!GO:0008180;signalosome;0.0332663571320698!GO:0008538;proteasome activator activity;0.0333716712631371!GO:0012506;vesicle membrane;0.0348654609634586!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0350701164531916!GO:0031902;late endosome membrane;0.0351769352218301!GO:0006695;cholesterol biosynthetic process;0.0353125716757235!GO:0019843;rRNA binding;0.0353692377205676!GO:0017166;vinculin binding;0.0369368404006014!GO:0030522;intracellular receptor-mediated signaling pathway;0.0374938374399383!GO:0008092;cytoskeletal protein binding;0.0374938374399383!GO:0042393;histone binding;0.0375630162483888!GO:0045941;positive regulation of transcription;0.0380957058872546!GO:0009451;RNA modification;0.0381463510280832!GO:0000339;RNA cap binding;0.0385383481796696!GO:0050178;phenylpyruvate tautomerase activity;0.0389189164019292!GO:0000922;spindle pole;0.0394519588199266!GO:0005784;translocon complex;0.0394662461446415!GO:0009303;rRNA transcription;0.0394662461446415!GO:0006740;NADPH regeneration;0.0394706898471282!GO:0006098;pentose-phosphate shunt;0.0394706898471282!GO:0030508;thiol-disulfide exchange intermediate activity;0.0396003433605817!GO:0050662;coenzyme binding;0.0397599194225148!GO:0043624;cellular protein complex disassembly;0.04007800599227!GO:0035303;regulation of dephosphorylation;0.0401357669027869!GO:0031570;DNA integrity checkpoint;0.040475754556627!GO:0006275;regulation of DNA replication;0.0422334537058138!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0424458609575013!GO:0051098;regulation of binding;0.0424458609575013!GO:0007021;tubulin folding;0.0433548886475941!GO:0046467;membrane lipid biosynthetic process;0.0434670488405174!GO:0006984;ER-nuclear signaling pathway;0.0439712928906083!GO:0031365;N-terminal protein amino acid modification;0.044340327815127!GO:0000082;G1/S transition of mitotic cell cycle;0.0443788267112463!GO:0016884;carbon-nitrogen ligase activity, with glutamine as amido-N-donor;0.0445950034572983!GO:0005938;cell cortex;0.0452634636733165!GO:0000096;sulfur amino acid metabolic process;0.0452897211204251!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.0452897211204251!GO:0005665;DNA-directed RNA polymerase II, core complex;0.045620231459764!GO:0044454;nuclear chromosome part;0.0471539566871845!GO:0007093;mitotic cell cycle checkpoint;0.0473416410888071!GO:0008637;apoptotic mitochondrial changes;0.0474459287374773!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0474459287374773!GO:0042421;norepinephrine biosynthetic process;0.0481594884390606!GO:0042415;norepinephrine metabolic process;0.0481594884390606!GO:0007088;regulation of mitosis;0.0482048724478698!GO:0008632;apoptotic program;0.0482562180296657!GO:0007266;Rho protein signal transduction;0.0485060450031441!GO:0006144;purine base metabolic process;0.0485720157505875!GO:0006733;oxidoreduction coenzyme metabolic process;0.0488807421369792!GO:0015036;disulfide oxidoreductase activity;0.0494879947353104!GO:0035259;glucocorticoid receptor binding;0.04966143579288!GO:0007004;telomere maintenance via telomerase;0.049896027759808 | |||
|sample_id=10482 | |sample_id=10482 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 98: | ||
|sample_tissue=breast | |sample_tissue=breast | ||
|top_motifs=ZEB1:1.94530569429;SNAI1..3:1.79387446749;PPARG:1.75049916426;HOX{A6,A7,B6,B7}:1.62641092231;PITX1..3:1.58663748825;FOX{F1,F2,J1}:1.52547179405;MYOD1:1.38860345341;FOXQ1:1.36603501123;HOXA9_MEIS1:1.18224005831;bHLH_family:1.16360746363;VSX1,2:1.16086570841;CDX1,2,4:1.10120525819;ARID5B:1.08421565053;ZBTB16:1.03843233621;TFDP1:1.03153923861;BREu{core}:1.02785912572;IKZF2:1.02046189279;LMO2:1.00895336867;NKX6-1,2:0.884913128761;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.868125095064;DBP:0.863669140665;FOXD3:0.855256946596;NFY{A,B,C}:0.818447112663;PBX1:0.76564437537;STAT5{A,B}:0.742616538836;RBPJ:0.717580111779;POU2F1..3:0.704276253846;TFAP2B:0.70097325677;LHX3,4:0.68207950007;FOXN1:0.65620579224;ONECUT1,2:0.644802917227;ESRRA:0.641975972217;MED-1{core}:0.62554764785;ELK1,4_GABP{A,B1}:0.614116979685;XCPE1{core}:0.5849641732;EVI1:0.569386248029;NRF1:0.562385119575;GFI1:0.552174715489;EGR1..3:0.522419774137;PAX6:0.513523321324;MTF1:0.496702783142;FOXL1:0.477319017579;FOXP1:0.473177627347;ALX1:0.460017363683;TFAP2{A,C}:0.450214666135;ATF2:0.440013084364;SP1:0.377070356998;OCT4_SOX2{dimer}:0.360013784981;RFX2..5_RFXANK_RFXAP:0.359381535954;SREBF1,2:0.324042880734;E2F1..5:0.317646800285;HOX{A4,D4}:0.307093230241;ZFP161:0.260663111956;BPTF:0.23548090511;HIF1A:0.234446460486;TOPORS:0.22324545972;NR6A1:0.220507860669;FOX{D1,D2}:0.213561878562;HOX{A5,B5}:0.166653078917;HNF1A:0.16247189812;POU5F1:0.152341785116;POU3F1..4:0.141610067412;RFX1:0.13720888843;POU1F1:0.124604382893;LEF1_TCF7_TCF7L1,2:0.111306457636;FOX{I1,J2}:0.106773297945;PAX2:0.0985727717227;AIRE:0.0974413364899;ZNF143:0.0859922257361;ADNP_IRX_SIX_ZHX:0.0830077831088;POU6F1:0.0665631157914;IKZF1:0.0663767373737;FOXA2:0.0602400049004;TEAD1:0.0335780603122;HIC1:0.0237241855789;RORA:0.00202547195144;NR5A1,2:-0.0104032459783;PAX8:-0.0141606694597;CDC5L:-0.0151768870525;NANOG:-0.0173029047532;NR1H4:-0.0216187478428;UFEwm:-0.0311593253788;AHR_ARNT_ARNT2:-0.0498753385672;MYB:-0.0626413196368;TBX4,5:-0.0840797000396;FOXO1,3,4:-0.0855959786293;SOX5:-0.120349307195;REST:-0.137794535486;NFIX:-0.14777070608;FOS_FOS{B,L1}_JUN{B,D}:-0.156368948674;STAT1,3:-0.157369023784;ZIC1..3:-0.173245041716;NKX2-3_NKX2-5:-0.175116280174;ATF5_CREB3:-0.17835499965;ZNF148:-0.181518778846;ATF4:-0.183109814009;HLF:-0.199126642751;TLX2:-0.217624087351;MTE{core}:-0.219916454601;YY1:-0.222237500434;FOSL2:-0.222728623734;PRRX1,2:-0.225586828666;ATF6:-0.245903624324;FOXP3:-0.260934705812;ESR1:-0.267916915058;TEF:-0.282071427943;CEBPA,B_DDIT3:-0.295675947707;SOX{8,9,10}:-0.298475034375;CUX2:-0.309093844768;HNF4A_NR2F1,2:-0.312410666659;NFE2:-0.32002983898;PAX4:-0.340820010789;MEF2{A,B,C,D}:-0.352169098738;TP53:-0.354273943139;HMGA1,2:-0.372043501134;NFIL3:-0.374438606275;XBP1:-0.375314854051;TAL1_TCF{3,4,12}:-0.379522248931;NKX2-1,4:-0.380553148479;NHLH1,2:-0.383330155806;BACH2:-0.383704196061;GATA6:-0.392822282293;HSF1,2:-0.399631108206;GTF2I:-0.40010881681;NFE2L1:-0.413107626525;SOX2:-0.433631972961;PAX1,9:-0.440777289235;TFCP2:-0.477945880084;ZBTB6:-0.488082157796;TFAP4:-0.493717729267;MZF1:-0.503026422683;MYFfamily:-0.505829876212;GZF1:-0.529438776941;TLX1..3_NFIC{dimer}:-0.549973328914;FOXM1:-0.551140288834;PATZ1:-0.565762833112;GATA4:-0.571876315066;RUNX1..3:-0.585088665719;HBP1_HMGB_SSRP1_UBTF:-0.602286481012;NFKB1_REL_RELA:-0.609998963998;JUN:-0.621537122641;ELF1,2,4:-0.625232391249;MAZ:-0.637509084137;SRF:-0.667438976517;SPI1:-0.669589595779;STAT2,4,6:-0.671445565866;AR:-0.682077403944;PAX5:-0.684263330179;SPIB:-0.689439475365;RREB1:-0.692250040972;NFE2L2:-0.704463285964;KLF4:-0.735570074834;NKX2-2,8:-0.749172144666;NKX3-1:-0.757066875751;CRX:-0.791654611979;ZNF423:-0.793752444374;EN1,2:-0.795169378093;HES1:-0.79971355384;TBP:-0.809879572828;RXRA_VDR{dimer}:-0.821204271984;ZNF384:-0.844311519495;CREB1:-0.850665457596;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.85245714345;PAX3,7:-0.862610446306;GTF2A1,2:-0.86889967162;MAFB:-0.888567797089;ETS1,2:-0.900398901708;T:-0.987395176846;GFI1B:-0.989265025875;PRDM1:-0.99966407217;SOX17:-1.00444408795;HMX1:-1.00772773915;ALX4:-1.01544973495;NKX3-2:-1.02107413766;DMAP1_NCOR{1,2}_SMARC:-1.03260770241;TGIF1:-1.03343486607;IRF7:-1.03398169183;NFATC1..3:-1.07166018194;NANOG{mouse}:-1.12738985598;NR3C1:-1.15927023313;IRF1,2:-1.16289140673;PDX1:-1.17514176237;EP300:-1.22972176315;EBF1:-1.24305282044;HAND1,2:-1.27034902989;MYBL2:-1.32218043373;GCM1,2:-1.49987383465;ZNF238:-1.57784825811;GLI1..3:-1.67022481177;RXR{A,B,G}:-1.72701308413;SPZ1:-1.83433604395;SMAD1..7,9:-1.84617153595 | |top_motifs=ZEB1:1.94530569429;SNAI1..3:1.79387446749;PPARG:1.75049916426;HOX{A6,A7,B6,B7}:1.62641092231;PITX1..3:1.58663748825;FOX{F1,F2,J1}:1.52547179405;MYOD1:1.38860345341;FOXQ1:1.36603501123;HOXA9_MEIS1:1.18224005831;bHLH_family:1.16360746363;VSX1,2:1.16086570841;CDX1,2,4:1.10120525819;ARID5B:1.08421565053;ZBTB16:1.03843233621;TFDP1:1.03153923861;BREu{core}:1.02785912572;IKZF2:1.02046189279;LMO2:1.00895336867;NKX6-1,2:0.884913128761;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.868125095064;DBP:0.863669140665;FOXD3:0.855256946596;NFY{A,B,C}:0.818447112663;PBX1:0.76564437537;STAT5{A,B}:0.742616538836;RBPJ:0.717580111779;POU2F1..3:0.704276253846;TFAP2B:0.70097325677;LHX3,4:0.68207950007;FOXN1:0.65620579224;ONECUT1,2:0.644802917227;ESRRA:0.641975972217;MED-1{core}:0.62554764785;ELK1,4_GABP{A,B1}:0.614116979685;XCPE1{core}:0.5849641732;EVI1:0.569386248029;NRF1:0.562385119575;GFI1:0.552174715489;EGR1..3:0.522419774137;PAX6:0.513523321324;MTF1:0.496702783142;FOXL1:0.477319017579;FOXP1:0.473177627347;ALX1:0.460017363683;TFAP2{A,C}:0.450214666135;ATF2:0.440013084364;SP1:0.377070356998;OCT4_SOX2{dimer}:0.360013784981;RFX2..5_RFXANK_RFXAP:0.359381535954;SREBF1,2:0.324042880734;E2F1..5:0.317646800285;HOX{A4,D4}:0.307093230241;ZFP161:0.260663111956;BPTF:0.23548090511;HIF1A:0.234446460486;TOPORS:0.22324545972;NR6A1:0.220507860669;FOX{D1,D2}:0.213561878562;HOX{A5,B5}:0.166653078917;HNF1A:0.16247189812;POU5F1:0.152341785116;POU3F1..4:0.141610067412;RFX1:0.13720888843;POU1F1:0.124604382893;LEF1_TCF7_TCF7L1,2:0.111306457636;FOX{I1,J2}:0.106773297945;PAX2:0.0985727717227;AIRE:0.0974413364899;ZNF143:0.0859922257361;ADNP_IRX_SIX_ZHX:0.0830077831088;POU6F1:0.0665631157914;IKZF1:0.0663767373737;FOXA2:0.0602400049004;TEAD1:0.0335780603122;HIC1:0.0237241855789;RORA:0.00202547195144;NR5A1,2:-0.0104032459783;PAX8:-0.0141606694597;CDC5L:-0.0151768870525;NANOG:-0.0173029047532;NR1H4:-0.0216187478428;UFEwm:-0.0311593253788;AHR_ARNT_ARNT2:-0.0498753385672;MYB:-0.0626413196368;TBX4,5:-0.0840797000396;FOXO1,3,4:-0.0855959786293;SOX5:-0.120349307195;REST:-0.137794535486;NFIX:-0.14777070608;FOS_FOS{B,L1}_JUN{B,D}:-0.156368948674;STAT1,3:-0.157369023784;ZIC1..3:-0.173245041716;NKX2-3_NKX2-5:-0.175116280174;ATF5_CREB3:-0.17835499965;ZNF148:-0.181518778846;ATF4:-0.183109814009;HLF:-0.199126642751;TLX2:-0.217624087351;MTE{core}:-0.219916454601;YY1:-0.222237500434;FOSL2:-0.222728623734;PRRX1,2:-0.225586828666;ATF6:-0.245903624324;FOXP3:-0.260934705812;ESR1:-0.267916915058;TEF:-0.282071427943;CEBPA,B_DDIT3:-0.295675947707;SOX{8,9,10}:-0.298475034375;CUX2:-0.309093844768;HNF4A_NR2F1,2:-0.312410666659;NFE2:-0.32002983898;PAX4:-0.340820010789;MEF2{A,B,C,D}:-0.352169098738;TP53:-0.354273943139;HMGA1,2:-0.372043501134;NFIL3:-0.374438606275;XBP1:-0.375314854051;TAL1_TCF{3,4,12}:-0.379522248931;NKX2-1,4:-0.380553148479;NHLH1,2:-0.383330155806;BACH2:-0.383704196061;GATA6:-0.392822282293;HSF1,2:-0.399631108206;GTF2I:-0.40010881681;NFE2L1:-0.413107626525;SOX2:-0.433631972961;PAX1,9:-0.440777289235;TFCP2:-0.477945880084;ZBTB6:-0.488082157796;TFAP4:-0.493717729267;MZF1:-0.503026422683;MYFfamily:-0.505829876212;GZF1:-0.529438776941;TLX1..3_NFIC{dimer}:-0.549973328914;FOXM1:-0.551140288834;PATZ1:-0.565762833112;GATA4:-0.571876315066;RUNX1..3:-0.585088665719;HBP1_HMGB_SSRP1_UBTF:-0.602286481012;NFKB1_REL_RELA:-0.609998963998;JUN:-0.621537122641;ELF1,2,4:-0.625232391249;MAZ:-0.637509084137;SRF:-0.667438976517;SPI1:-0.669589595779;STAT2,4,6:-0.671445565866;AR:-0.682077403944;PAX5:-0.684263330179;SPIB:-0.689439475365;RREB1:-0.692250040972;NFE2L2:-0.704463285964;KLF4:-0.735570074834;NKX2-2,8:-0.749172144666;NKX3-1:-0.757066875751;CRX:-0.791654611979;ZNF423:-0.793752444374;EN1,2:-0.795169378093;HES1:-0.79971355384;TBP:-0.809879572828;RXRA_VDR{dimer}:-0.821204271984;ZNF384:-0.844311519495;CREB1:-0.850665457596;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.85245714345;PAX3,7:-0.862610446306;GTF2A1,2:-0.86889967162;MAFB:-0.888567797089;ETS1,2:-0.900398901708;T:-0.987395176846;GFI1B:-0.989265025875;PRDM1:-0.99966407217;SOX17:-1.00444408795;HMX1:-1.00772773915;ALX4:-1.01544973495;NKX3-2:-1.02107413766;DMAP1_NCOR{1,2}_SMARC:-1.03260770241;TGIF1:-1.03343486607;IRF7:-1.03398169183;NFATC1..3:-1.07166018194;NANOG{mouse}:-1.12738985598;NR3C1:-1.15927023313;IRF1,2:-1.16289140673;PDX1:-1.17514176237;EP300:-1.22972176315;EBF1:-1.24305282044;HAND1,2:-1.27034902989;MYBL2:-1.32218043373;GCM1,2:-1.49987383465;ZNF238:-1.57784825811;GLI1..3:-1.67022481177;RXR{A,B,G}:-1.72701308413;SPZ1:-1.83433604395;SMAD1..7,9:-1.84617153595 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10482-107A5;search_select_hide=table117:FF:10482-107A5 | |||
}} | }} | ||
Latest revision as of 14:26, 3 June 2020
| Name: | breast carcinoma cell line:MCF7 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11943 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11943
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11943
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.73 |
| 10 | 10 | 0.497 |
| 100 | 100 | 0.946 |
| 101 | 101 | 0.35 |
| 102 | 102 | 0.482 |
| 103 | 103 | 0.113 |
| 104 | 104 | 0.485 |
| 105 | 105 | 0.0744 |
| 106 | 106 | 0.09 |
| 107 | 107 | 0.438 |
| 108 | 108 | 0.524 |
| 109 | 109 | 0.883 |
| 11 | 11 | 0.296 |
| 110 | 110 | 0.627 |
| 111 | 111 | 0.802 |
| 112 | 112 | 0.511 |
| 113 | 113 | 0.173 |
| 114 | 114 | 0.153 |
| 115 | 115 | 0.31 |
| 116 | 116 | 0.259 |
| 117 | 117 | 0.708 |
| 118 | 118 | 0.252 |
| 119 | 119 | 0.506 |
| 12 | 12 | 0.403 |
| 120 | 120 | 0.861 |
| 121 | 121 | 0.225 |
| 122 | 122 | 0.284 |
| 123 | 123 | 0.136 |
| 124 | 124 | 0.0875 |
| 125 | 125 | 0.613 |
| 126 | 126 | 0.759 |
| 127 | 127 | 0.984 |
| 128 | 128 | 0.217 |
| 129 | 129 | 0.524 |
| 13 | 13 | 0.745 |
| 130 | 130 | 0.485 |
| 131 | 131 | 0.228 |
| 132 | 132 | 0.958 |
| 133 | 133 | 0.00212 |
| 134 | 134 | 0.382 |
| 135 | 135 | 0.232 |
| 136 | 136 | 0.0213 |
| 137 | 137 | 0.152 |
| 138 | 138 | 0.308 |
| 139 | 139 | 0.864 |
| 14 | 14 | 0.891 |
| 140 | 140 | 0.705 |
| 141 | 141 | 0.15 |
| 142 | 142 | 0.608 |
| 143 | 143 | 0.00982 |
| 144 | 144 | 0.558 |
| 145 | 145 | 0.43 |
| 146 | 146 | 0.183 |
| 147 | 147 | 0.941 |
| 148 | 148 | 0.075 |
| 149 | 149 | 0.108 |
| 15 | 15 | 0.752 |
| 150 | 150 | 0.815 |
| 151 | 151 | 0.234 |
| 152 | 152 | 0.334 |
| 153 | 153 | 0.797 |
| 154 | 154 | 0.869 |
| 155 | 155 | 0.166 |
| 156 | 156 | 0.896 |
| 157 | 157 | 0.497 |
| 158 | 158 | 0.426 |
| 159 | 159 | 0.685 |
| 16 | 16 | 0.336 |
| 160 | 160 | 0.318 |
| 161 | 161 | 0.356 |
| 162 | 162 | 0.302 |
| 163 | 163 | 0.618 |
| 164 | 164 | 0.866 |
| 165 | 165 | 0.789 |
| 166 | 166 | 0.23 |
| 167 | 167 | 0.34 |
| 168 | 168 | 0.0386 |
| 169 | 169 | 0.207 |
| 17 | 17 | 0.761 |
| 18 | 18 | 0.215 |
| 19 | 19 | 0.143 |
| 2 | 2 | 0.435 |
| 20 | 20 | 0.313 |
| 21 | 21 | 0.817 |
| 22 | 22 | 0.135 |
| 23 | 23 | 0.0267 |
| 24 | 24 | 0.606 |
| 25 | 25 | 0.777 |
| 26 | 26 | 0.323 |
| 27 | 27 | 0.412 |
| 28 | 28 | 0.738 |
| 29 | 29 | 0.982 |
| 3 | 3 | 0.0542 |
| 30 | 30 | 0.946 |
| 31 | 31 | 0.584 |
| 32 | 32 | 0.0385 |
| 33 | 33 | 0.588 |
| 34 | 34 | 0.101 |
| 35 | 35 | 0.448 |
| 36 | 36 | 0.0334 |
| 37 | 37 | 0.0619 |
| 38 | 38 | 0.596 |
| 39 | 39 | 0.238 |
| 4 | 4 | 0.423 |
| 40 | 40 | 0.38 |
| 41 | 41 | 0.00464 |
| 42 | 42 | 0.197 |
| 43 | 43 | 0.0678 |
| 44 | 44 | 0.905 |
| 45 | 45 | 0.675 |
| 46 | 46 | 0.568 |
| 47 | 47 | 0.692 |
| 48 | 48 | 0.987 |
| 49 | 49 | 0.253 |
| 5 | 5 | 0.259 |
| 50 | 50 | 0.33 |
| 51 | 51 | 0.798 |
| 52 | 52 | 0.726 |
| 53 | 53 | 0.747 |
| 54 | 54 | 0.756 |
| 55 | 55 | 0.677 |
| 56 | 56 | 0.302 |
| 57 | 57 | 0.443 |
| 58 | 58 | 0.264 |
| 59 | 59 | 0.0772 |
| 6 | 6 | 0.893 |
| 60 | 60 | 0.0545 |
| 61 | 61 | 0.807 |
| 62 | 62 | 0.0839 |
| 63 | 63 | 0.281 |
| 64 | 64 | 0.7 |
| 65 | 65 | 0.0549 |
| 66 | 66 | 0.0247 |
| 67 | 67 | 0.187 |
| 68 | 68 | 0.442 |
| 69 | 69 | 0.685 |
| 7 | 7 | 0.383 |
| 70 | 70 | 0.319 |
| 71 | 71 | 0.107 |
| 72 | 72 | 0.35 |
| 73 | 73 | 0.23 |
| 74 | 74 | 0.269 |
| 75 | 75 | 0.504 |
| 76 | 76 | 0.353 |
| 77 | 77 | 0.0407 |
| 78 | 78 | 0.416 |
| 79 | 79 | 0.141 |
| 8 | 8 | 0.665 |
| 80 | 80 | 0.00336 |
| 81 | 81 | 0.151 |
| 82 | 82 | 0.343 |
| 83 | 83 | 0.544 |
| 84 | 84 | 0.74 |
| 85 | 85 | 0.517 |
| 86 | 86 | 0.342 |
| 87 | 87 | 0.102 |
| 88 | 88 | 0.213 |
| 89 | 89 | 0.037 |
| 9 | 9 | 0.00612 |
| 90 | 90 | 0.233 |
| 91 | 91 | 0.145 |
| 92 | 92 | 0.536 |
| 93 | 93 | 0.0607 |
| 94 | 94 | 0.737 |
| 95 | 95 | 0.695 |
| 96 | 96 | 0.0628 |
| 97 | 97 | 0.842 |
| 98 | 98 | 0.703 |
| 99 | 99 | 0.827 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11943
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0100093 MCF-7 cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000255 (eukaryotic cell)
DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
7 (disease of anatomical entity)
5093 (thoracic cancer)
305 (carcinoma)
299 (adenocarcinoma)
1612 (breast cancer)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000310 (breast)
0002100 (trunk)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)
0009569 (subdivision of trunk)
0001443 (chest)
0000915 (thoracic segment of trunk)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100093 (MCF-7 cell sample)
0100297 (carcinoma cell line sample)
0101912 (breast adenocarcinoma cell line sample)
0101120 (epithelial cell line sample)
0100816 (breast cell line sample)
0100167 (adenocarcinoma cell line sample)
0100356 (breast cancer cell line sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA
