FF:11462-119B4: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000465,UBERON: | |DRA_sample_Accession=CAGE@SAMD00005335 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005335 | ||
|accession_numbers=CAGE;DRX008383;DRR009255;DRZ000680;DRZ002065;DRZ012030;DRZ013415 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037231;DRR041597;DRZ007239 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002384,UBERON:0000479,UBERON:0011216,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0004905,UBERON:0011135,UBERON:0000075,UBERON:0002216,UBERON:0004765,UBERON:0011134,UBERON:0002209,UBERON:0002213,UBERON:0000982,UBERON:0010317,UBERON:0007844,UBERON:0002242,UBERON:0002204,UBERON:0001434,UBERON:0004770,UBERON:0011138,UBERON:0001130,UBERON:0001066,UBERON:0001468 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0002564 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000123 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 43: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Nucleus%2520Pulposus%2520Cell%252c%2520donor3.CNhs12063.11462-119B4.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Nucleus%2520Pulposus%2520Cell%252c%2520donor3.CNhs12063.11462-119B4.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Nucleus%2520Pulposus%2520Cell%252c%2520donor3.CNhs12063.11462-119B4.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Nucleus%2520Pulposus%2520Cell%252c%2520donor3.CNhs12063.11462-119B4.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Nucleus%2520Pulposus%2520Cell%252c%2520donor3.CNhs12063.11462-119B4.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11462-119B4 | |id=FF:11462-119B4 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000123 | ||
|is_obsolete= | |||
|library_id=CNhs12063 | |||
|library_id_phase_based=2:CNhs12063 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11462 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10014.CAGATC.11462 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11462 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10014.CAGATC.11462 | |||
|name=Nucleus Pulposus Cell, donor3 | |name=Nucleus Pulposus Cell, donor3 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 64: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12063,LSID838,release011,COMPLETED | |profile_hcage=CNhs12063,LSID838,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10014,,, | |profile_srnaseq=SRhi10014,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,-0.160318030086386,0,-0.277362132193514,0.198020845019939,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383410277978977,0,0,0,0,0,0.090275736270407,0,0,0.125631627609854,0,0,0,0,0,0,0,0,0,0,0,0,0.118701409592778,0.065507968269934,0,0,0,0,0,0,0,0.0279030280949806,0,0,0,0.501075728050445,0,0,0,-0.0969923612426051,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.06748275286789,0.052118049207815,0,0,0,0,0,-0.0194732317077366,0,0,0,-0.0584468268118252,0.103261579850516,0,0.188233632538465,0,0,-0.0980353512377064,0.0926360579248035,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.007862504493169,0,0,0,-0.0714597859764166,-0.34278476120528,0,0,0,0,0,0 | |||
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| |||
|rna_box=119 | |rna_box=119 | ||
|rna_catalog_number=SC4805 | |rna_catalog_number=SC4805 | ||
| Line 56: | Line 81: | ||
|rna_tube_id=119B4 | |rna_tube_id=119B4 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10014.CAGATC | |||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 96: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.62132363187501e-225!GO:0005737;cytoplasm;3.06569466056687e-194!GO:0043231;intracellular membrane-bound organelle;7.201779538056e-180!GO:0043227;membrane-bound organelle;1.57155809267554e-179!GO:0043226;organelle;1.28032425297038e-177!GO:0043229;intracellular organelle;2.5295072147802e-177!GO:0044444;cytoplasmic part;1.01800659499121e-151!GO:0044422;organelle part;1.02864406508183e-126!GO:0044446;intracellular organelle part;2.42925976654334e-125!GO:0032991;macromolecular complex;1.78001296434308e-87!GO:0030529;ribonucleoprotein complex;6.839703278225e-86!GO:0044237;cellular metabolic process;3.5375708733289e-85!GO:0044238;primary metabolic process;1.31581366134288e-84!GO:0005739;mitochondrion;1.27522055972884e-75!GO:0043170;macromolecule metabolic process;8.5222026799476e-75!GO:0005515;protein binding;2.17209554362986e-68!GO:0043233;organelle lumen;4.04034416029237e-67!GO:0031974;membrane-enclosed lumen;4.04034416029237e-67!GO:0003723;RNA binding;2.9934944958974e-63!GO:0005634;nucleus;1.03841330623113e-57!GO:0044428;nuclear part;2.21062849047362e-57!GO:0031090;organelle membrane;8.1056078231597e-57!GO:0005840;ribosome;1.7699946365931e-56!GO:0006412;translation;9.29135417289533e-52!GO:0044429;mitochondrial part;6.64162954289851e-51!GO:0003735;structural constituent of ribosome;7.90372257771806e-50!GO:0019538;protein metabolic process;9.29803231429555e-50!GO:0009058;biosynthetic process;1.67652170658576e-48!GO:0044260;cellular macromolecule metabolic process;4.91237582551066e-45!GO:0033279;ribosomal subunit;1.06275874307004e-44!GO:0044267;cellular protein metabolic process;7.19291601957714e-44!GO:0009059;macromolecule biosynthetic process;1.46272441133253e-43!GO:0015031;protein transport;2.38263863282181e-43!GO:0044249;cellular biosynthetic process;4.02579480806416e-43!GO:0033036;macromolecule localization;1.29098973151195e-42!GO:0016043;cellular component organization and biogenesis;1.45542546272292e-42!GO:0005829;cytosol;1.50826585861947e-42!GO:0006396;RNA processing;2.44571349866328e-42!GO:0043234;protein complex;5.69544099526558e-42!GO:0031967;organelle envelope;1.27269467866775e-40!GO:0045184;establishment of protein localization;2.25698166919046e-40!GO:0031975;envelope;3.06185097668206e-40!GO:0008104;protein localization;5.10617867110258e-40!GO:0010467;gene expression;7.57551941896459e-40!GO:0043283;biopolymer metabolic process;1.94959011623445e-36!GO:0031981;nuclear lumen;3.6283202565416e-36!GO:0005740;mitochondrial envelope;3.60297302056214e-33!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.64957322054172e-32!GO:0016071;mRNA metabolic process;3.13057868062361e-32!GO:0046907;intracellular transport;9.13398164879302e-32!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.12969294064719e-31!GO:0031966;mitochondrial membrane;2.93203697299944e-31!GO:0008380;RNA splicing;6.15457785796558e-31!GO:0019866;organelle inner membrane;7.24511986358408e-30!GO:0006886;intracellular protein transport;1.7205230059684e-29!GO:0022613;ribonucleoprotein complex biogenesis and assembly;4.27910727586968e-29!GO:0065003;macromolecular complex assembly;1.94795739170644e-28!GO:0005743;mitochondrial inner membrane;2.16064470076969e-28!GO:0006397;mRNA processing;8.11077477555189e-28!GO:0044445;cytosolic part;3.39491297443517e-26!GO:0022607;cellular component assembly;7.20042851007579e-25!GO:0006119;oxidative phosphorylation;3.54994768425551e-24!GO:0006996;organelle organization and biogenesis;1.96828149308902e-23!GO:0015934;large ribosomal subunit;6.36434581853167e-23!GO:0015935;small ribosomal subunit;6.49195774606577e-23!GO:0044455;mitochondrial membrane part;8.97967567481666e-23!GO:0006457;protein folding;3.30863157095488e-22!GO:0005783;endoplasmic reticulum;5.00369897691909e-22!GO:0012505;endomembrane system;8.43229718831682e-22!GO:0031980;mitochondrial lumen;9.20127974824643e-22!GO:0005759;mitochondrial matrix;9.20127974824643e-22!GO:0043228;non-membrane-bound organelle;1.00693449304397e-21!GO:0043232;intracellular non-membrane-bound organelle;1.00693449304397e-21!GO:0005681;spliceosome;3.71791706969464e-21!GO:0005654;nucleoplasm;3.92151171387116e-21!GO:0051649;establishment of cellular localization;3.72195607156087e-20!GO:0048770;pigment granule;4.57681705647988e-20!GO:0042470;melanosome;4.57681705647988e-20!GO:0051641;cellular localization;7.5510919390097e-20!GO:0005746;mitochondrial respiratory chain;3.72121611676747e-19!GO:0044432;endoplasmic reticulum part;1.20233960854263e-18!GO:0003676;nucleic acid binding;2.86341067365278e-18!GO:0051186;cofactor metabolic process;3.92410027668497e-18!GO:0005794;Golgi apparatus;5.01831322821513e-18!GO:0044451;nucleoplasm part;1.56629569817433e-17!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.27839230136526e-17!GO:0022618;protein-RNA complex assembly;2.54603007099295e-17!GO:0016462;pyrophosphatase activity;3.49474734791888e-17!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;5.00761680026446e-17!GO:0016817;hydrolase activity, acting on acid anhydrides;7.13429772582734e-17!GO:0016874;ligase activity;7.66036259726354e-17!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.33103672205133e-16!GO:0005730;nucleolus;1.38078869263097e-16!GO:0050136;NADH dehydrogenase (quinone) activity;1.65712969620007e-16!GO:0003954;NADH dehydrogenase activity;1.65712969620007e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.65712969620007e-16!GO:0017111;nucleoside-triphosphatase activity;3.04561899145968e-16!GO:0006512;ubiquitin cycle;3.38752605381411e-16!GO:0044265;cellular macromolecule catabolic process;3.6216991689215e-16!GO:0000502;proteasome complex (sensu Eukaryota);4.15601598684801e-16!GO:0005761;mitochondrial ribosome;4.88563869528864e-16!GO:0000313;organellar ribosome;4.88563869528864e-16!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);5.74287146105543e-16!GO:0043285;biopolymer catabolic process;1.15870144431494e-15!GO:0051603;proteolysis involved in cellular protein catabolic process;1.21093101428026e-15!GO:0008134;transcription factor binding;1.53191002301394e-15!GO:0016070;RNA metabolic process;1.63729178534265e-15!GO:0019941;modification-dependent protein catabolic process;2.43172775164417e-15!GO:0043632;modification-dependent macromolecule catabolic process;2.43172775164417e-15!GO:0006511;ubiquitin-dependent protein catabolic process;2.98874761519934e-15!GO:0044257;cellular protein catabolic process;3.28526060415581e-15!GO:0006259;DNA metabolic process;6.82435441522667e-15!GO:0009057;macromolecule catabolic process;7.48039978246395e-15!GO:0030964;NADH dehydrogenase complex (quinone);1.0221964574242e-14!GO:0045271;respiratory chain complex I;1.0221964574242e-14!GO:0005747;mitochondrial respiratory chain complex I;1.0221964574242e-14!GO:0000166;nucleotide binding;1.0221964574242e-14!GO:0042775;organelle ATP synthesis coupled electron transport;1.04528039978777e-14!GO:0042773;ATP synthesis coupled electron transport;1.04528039978777e-14!GO:0006605;protein targeting;1.25819773065e-14!GO:0008135;translation factor activity, nucleic acid binding;1.57361646429716e-14!GO:0051082;unfolded protein binding;1.93326376419348e-14!GO:0044248;cellular catabolic process;2.40219085007593e-14!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.90489131124534e-14!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;3.46417761354891e-14!GO:0030163;protein catabolic process;4.30843484905656e-14!GO:0048193;Golgi vesicle transport;7.41907884917569e-14!GO:0006732;coenzyme metabolic process;8.6676814110702e-14!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.22594785440869e-13!GO:0005789;endoplasmic reticulum membrane;2.31750886738911e-13!GO:0016192;vesicle-mediated transport;2.31750886738911e-13!GO:0005793;ER-Golgi intermediate compartment;5.20156808021654e-13!GO:0042254;ribosome biogenesis and assembly;2.98573653690992e-12!GO:0000398;nuclear mRNA splicing, via spliceosome;5.07009838621471e-12!GO:0000375;RNA splicing, via transesterification reactions;5.07009838621471e-12!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;5.07009838621471e-12!GO:0009055;electron carrier activity;6.91855502488173e-12!GO:0003743;translation initiation factor activity;1.04328937912144e-11!GO:0043412;biopolymer modification;1.8427615861603e-11!GO:0007049;cell cycle;2.93177203807211e-11!GO:0006413;translational initiation;3.35586026297004e-11!GO:0006163;purine nucleotide metabolic process;8.6895710974223e-11!GO:0009150;purine ribonucleotide metabolic process;1.25754123562678e-10!GO:0009259;ribonucleotide metabolic process;1.25754123562678e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.59155564683091e-10!GO:0012501;programmed cell death;1.71447330226891e-10!GO:0006464;protein modification process;3.69664066999435e-10!GO:0017076;purine nucleotide binding;3.74740985639437e-10!GO:0006915;apoptosis;4.38075098372766e-10!GO:0006446;regulation of translational initiation;4.4760676119724e-10!GO:0006164;purine nucleotide biosynthetic process;6.56335076374013e-10!GO:0032553;ribonucleotide binding;7.7359908602384e-10!GO:0032555;purine ribonucleotide binding;7.7359908602384e-10!GO:0009152;purine ribonucleotide biosynthetic process;9.13367355037499e-10!GO:0008219;cell death;1.10947680536463e-09!GO:0016265;death;1.10947680536463e-09!GO:0009199;ribonucleoside triphosphate metabolic process;1.43208453143668e-09!GO:0006399;tRNA metabolic process;1.69892221950792e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.75361234013136e-09!GO:0009260;ribonucleotide biosynthetic process;1.95689662844133e-09!GO:0005768;endosome;2.03335025416445e-09!GO:0016491;oxidoreductase activity;2.11667531521174e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;2.11667531521174e-09!GO:0009144;purine nucleoside triphosphate metabolic process;2.11667531521174e-09!GO:0009141;nucleoside triphosphate metabolic process;2.16452855422111e-09!GO:0016604;nuclear body;2.16776586471644e-09!GO:0003712;transcription cofactor activity;2.25968727512236e-09!GO:0008565;protein transporter activity;3.08111966597679e-09!GO:0031965;nuclear membrane;3.2023524577324e-09!GO:0051188;cofactor biosynthetic process;4.29533356219251e-09!GO:0009060;aerobic respiration;4.31156954091634e-09!GO:0005635;nuclear envelope;4.31868098613761e-09!GO:0006913;nucleocytoplasmic transport;4.83109856473574e-09!GO:0048523;negative regulation of cellular process;6.55020857600607e-09!GO:0009056;catabolic process;7.768905575299e-09!GO:0045333;cellular respiration;7.92928336342546e-09!GO:0015986;ATP synthesis coupled proton transport;8.69021573652509e-09!GO:0015985;energy coupled proton transport, down electrochemical gradient;8.69021573652509e-09!GO:0008639;small protein conjugating enzyme activity;8.77278695118616e-09!GO:0051169;nuclear transport;9.46066847046195e-09!GO:0017038;protein import;1.03769714155403e-08!GO:0006461;protein complex assembly;1.41787971067467e-08!GO:0046034;ATP metabolic process;1.55773057271501e-08!GO:0009142;nucleoside triphosphate biosynthetic process;1.6363376772825e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.6363376772825e-08!GO:0004842;ubiquitin-protein ligase activity;1.77006683622815e-08!GO:0044431;Golgi apparatus part;1.85028682700323e-08!GO:0022402;cell cycle process;2.17913174339153e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;2.42891814813704e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;2.42891814813704e-08!GO:0006974;response to DNA damage stimulus;2.44077518648846e-08!GO:0019829;cation-transporting ATPase activity;2.62995096870901e-08!GO:0019787;small conjugating protein ligase activity;2.64775173039505e-08!GO:0043687;post-translational protein modification;2.67107326864123e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;2.70055648427321e-08!GO:0030120;vesicle coat;3.63056202071999e-08!GO:0030662;coated vesicle membrane;3.63056202071999e-08!GO:0050794;regulation of cellular process;4.17278817701663e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;4.2856903984069e-08!GO:0004812;aminoacyl-tRNA ligase activity;4.2856903984069e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;4.2856903984069e-08!GO:0015078;hydrogen ion transmembrane transporter activity;4.3126645464439e-08!GO:0044453;nuclear membrane part;5.51000395800062e-08!GO:0051246;regulation of protein metabolic process;5.59871895841081e-08!GO:0016887;ATPase activity;5.8823047350927e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;6.02426225135573e-08!GO:0006364;rRNA processing;7.11548142188945e-08!GO:0042623;ATPase activity, coupled;7.44414152722902e-08!GO:0016469;proton-transporting two-sector ATPase complex;7.50628989024068e-08!GO:0030532;small nuclear ribonucleoprotein complex;7.70582782472496e-08!GO:0006888;ER to Golgi vesicle-mediated transport;8.04748183578841e-08!GO:0043038;amino acid activation;9.18901816299183e-08!GO:0006418;tRNA aminoacylation for protein translation;9.18901816299183e-08!GO:0043039;tRNA aminoacylation;9.18901816299183e-08!GO:0007005;mitochondrion organization and biogenesis;1.03131066727469e-07!GO:0003924;GTPase activity;1.08826253162399e-07!GO:0016072;rRNA metabolic process;1.51697880111315e-07!GO:0051726;regulation of cell cycle;1.57467416328448e-07!GO:0006754;ATP biosynthetic process;1.57663841311245e-07!GO:0006753;nucleoside phosphate metabolic process;1.57663841311245e-07!GO:0000074;regulation of progression through cell cycle;1.57663841311245e-07!GO:0006325;establishment and/or maintenance of chromatin architecture;1.58352400783814e-07!GO:0006099;tricarboxylic acid cycle;1.89241605575021e-07!GO:0046356;acetyl-CoA catabolic process;1.89241605575021e-07!GO:0048519;negative regulation of biological process;1.97072584735026e-07!GO:0006366;transcription from RNA polymerase II promoter;2.13193324711346e-07!GO:0051187;cofactor catabolic process;2.23318238642553e-07!GO:0048475;coated membrane;2.31282069107679e-07!GO:0030117;membrane coat;2.31282069107679e-07!GO:0005788;endoplasmic reticulum lumen;2.47436780674345e-07!GO:0030554;adenyl nucleotide binding;2.77717597080986e-07!GO:0006091;generation of precursor metabolites and energy;2.80503207741712e-07!GO:0005524;ATP binding;3.27708916173379e-07!GO:0044440;endosomal part;3.63995475591438e-07!GO:0010008;endosome membrane;3.63995475591438e-07!GO:0016881;acid-amino acid ligase activity;3.86876957865011e-07!GO:0016023;cytoplasmic membrane-bound vesicle;3.95337700812931e-07!GO:0031988;membrane-bound vesicle;4.13161995677001e-07!GO:0009117;nucleotide metabolic process;4.20554702903071e-07!GO:0009108;coenzyme biosynthetic process;4.31879584920455e-07!GO:0032559;adenyl ribonucleotide binding;4.3882994458595e-07!GO:0009109;coenzyme catabolic process;4.60081063454931e-07!GO:0006323;DNA packaging;4.91901510466077e-07!GO:0006084;acetyl-CoA metabolic process;4.91901510466077e-07!GO:0016607;nuclear speck;4.91901510466077e-07!GO:0016853;isomerase activity;5.44142778864722e-07!GO:0005773;vacuole;5.91950755010122e-07!GO:0005839;proteasome core complex (sensu Eukaryota);5.95816030944993e-07!GO:0065002;intracellular protein transport across a membrane;8.94233498249434e-07!GO:0008026;ATP-dependent helicase activity;9.01918496491666e-07!GO:0045259;proton-transporting ATP synthase complex;9.49982730762186e-07!GO:0005770;late endosome;1.1273076093994e-06!GO:0045786;negative regulation of progression through cell cycle;1.25906844651436e-06!GO:0008654;phospholipid biosynthetic process;1.4802750619046e-06!GO:0005762;mitochondrial large ribosomal subunit;1.6733331807825e-06!GO:0000315;organellar large ribosomal subunit;1.6733331807825e-06!GO:0051276;chromosome organization and biogenesis;1.82595972716004e-06!GO:0031982;vesicle;1.93342563068651e-06!GO:0042981;regulation of apoptosis;2.00320060840446e-06!GO:0031410;cytoplasmic vesicle;2.09600296388095e-06!GO:0043067;regulation of programmed cell death;2.11920652702981e-06!GO:0000278;mitotic cell cycle;2.31950460102343e-06!GO:0005643;nuclear pore;2.38128912280432e-06!GO:0000139;Golgi membrane;2.41827602860172e-06!GO:0065004;protein-DNA complex assembly;2.58119119162464e-06!GO:0043566;structure-specific DNA binding;3.36034779456576e-06!GO:0004386;helicase activity;3.45916053849639e-06!GO:0015980;energy derivation by oxidation of organic compounds;3.4854546429036e-06!GO:0050789;regulation of biological process;3.54902015732701e-06!GO:0006752;group transfer coenzyme metabolic process;4.49781397671081e-06!GO:0006281;DNA repair;4.55752798806429e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;4.73522932208453e-06!GO:0005798;Golgi-associated vesicle;4.7718053677702e-06!GO:0004298;threonine endopeptidase activity;5.17938109418181e-06!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;5.25897948339208e-06!GO:0016859;cis-trans isomerase activity;5.51458044194204e-06!GO:0043069;negative regulation of programmed cell death;5.5400189503523e-06!GO:0000323;lytic vacuole;6.49267884611216e-06!GO:0005764;lysosome;6.49267884611216e-06!GO:0009719;response to endogenous stimulus;7.06678910506099e-06!GO:0043066;negative regulation of apoptosis;7.26464776357371e-06!GO:0008361;regulation of cell size;8.55864667796573e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;8.68445320052349e-06!GO:0016049;cell growth;9.14868536992688e-06!GO:0000245;spliceosome assembly;9.14868536992688e-06!GO:0051170;nuclear import;9.67166016170467e-06!GO:0046930;pore complex;9.98762097295947e-06!GO:0032446;protein modification by small protein conjugation;1.09162881083926e-05!GO:0006606;protein import into nucleus;1.10225402015366e-05!GO:0031252;leading edge;1.21219805095113e-05!GO:0019843;rRNA binding;1.27510076330748e-05!GO:0016567;protein ubiquitination;1.31633739705114e-05!GO:0006613;cotranslational protein targeting to membrane;1.41004834289996e-05!GO:0003697;single-stranded DNA binding;1.52382847545216e-05!GO:0005667;transcription factor complex;1.56690433168233e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;1.92995011657418e-05!GO:0000151;ubiquitin ligase complex;1.932841418115e-05!GO:0030133;transport vesicle;1.97817798222316e-05!GO:0016787;hydrolase activity;1.98189108044525e-05!GO:0044262;cellular carbohydrate metabolic process;2.29596541275439e-05!GO:0006916;anti-apoptosis;2.47863350759619e-05!GO:0006333;chromatin assembly or disassembly;2.60804452946943e-05!GO:0000314;organellar small ribosomal subunit;2.96896087962831e-05!GO:0005763;mitochondrial small ribosomal subunit;2.96896087962831e-05!GO:0005525;GTP binding;3.21143328446054e-05!GO:0005769;early endosome;3.30543874317512e-05!GO:0001558;regulation of cell growth;3.57023082952556e-05!GO:0003713;transcription coactivator activity;3.57138033930774e-05!GO:0016563;transcription activator activity;3.8101755966463e-05!GO:0019867;outer membrane;4.29576049630035e-05!GO:0005905;coated pit;4.39252349020065e-05!GO:0045454;cell redox homeostasis;4.45120754661843e-05!GO:0050657;nucleic acid transport;4.45120754661843e-05!GO:0051236;establishment of RNA localization;4.45120754661843e-05!GO:0050658;RNA transport;4.45120754661843e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;4.58180002449417e-05!GO:0000785;chromatin;4.87081016119561e-05!GO:0006403;RNA localization;4.89921562298174e-05!GO:0016740;transferase activity;4.89921562298174e-05!GO:0031968;organelle outer membrane;5.207141354065e-05!GO:0016568;chromatin modification;7.23652682269265e-05!GO:0043021;ribonucleoprotein binding;7.62870830503778e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;9.13103245756798e-05!GO:0005694;chromosome;9.33444669648393e-05!GO:0030867;rough endoplasmic reticulum membrane;9.92191882820263e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000115287282823792!GO:0005741;mitochondrial outer membrane;0.000116823121672062!GO:0051427;hormone receptor binding;0.000122866081231806!GO:0043623;cellular protein complex assembly;0.000124386691260745!GO:0031324;negative regulation of cellular metabolic process;0.000125226715962168!GO:0008610;lipid biosynthetic process;0.000128178250335069!GO:0046474;glycerophospholipid biosynthetic process;0.000131280705477772!GO:0033116;ER-Golgi intermediate compartment membrane;0.000151765371301543!GO:0032561;guanyl ribonucleotide binding;0.000155413057982366!GO:0019001;guanyl nucleotide binding;0.000155413057982366!GO:0016126;sterol biosynthetic process;0.000156016337365094!GO:0003714;transcription corepressor activity;0.000156413780606359!GO:0016564;transcription repressor activity;0.000185733233499868!GO:0051789;response to protein stimulus;0.000185887607509289!GO:0006986;response to unfolded protein;0.000185887607509289!GO:0003724;RNA helicase activity;0.000196245917395682!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000227458652335055!GO:0035257;nuclear hormone receptor binding;0.000258914738971239!GO:0046467;membrane lipid biosynthetic process;0.000262452216852162!GO:0019899;enzyme binding;0.000266554386387574!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000267684534296219!GO:0004576;oligosaccharyl transferase activity;0.000279584171339097!GO:0006793;phosphorus metabolic process;0.000280872859217321!GO:0006796;phosphate metabolic process;0.000280872859217321!GO:0006334;nucleosome assembly;0.000298707093235764!GO:0019222;regulation of metabolic process;0.000318006397823521!GO:0005791;rough endoplasmic reticulum;0.000322565040668492!GO:0008250;oligosaccharyl transferase complex;0.0003337108445158!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.000348568901550677!GO:0016779;nucleotidyltransferase activity;0.000397891762713573!GO:0003899;DNA-directed RNA polymerase activity;0.000420688708794358!GO:0006260;DNA replication;0.000449295700324035!GO:0043681;protein import into mitochondrion;0.00045091802704842!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00046415519341614!GO:0016044;membrane organization and biogenesis;0.000482075257955591!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000503597072570533!GO:0005048;signal sequence binding;0.000516941579917004!GO:0044427;chromosomal part;0.000516941579917004!GO:0030036;actin cytoskeleton organization and biogenesis;0.000526048496769136!GO:0005885;Arp2/3 protein complex;0.000539856131578831!GO:0009165;nucleotide biosynthetic process;0.000539856131578831!GO:0009892;negative regulation of metabolic process;0.00056139258844686!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000602693475431855!GO:0031497;chromatin assembly;0.00062206138765997!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000643835797151923!GO:0005813;centrosome;0.000669139258432425!GO:0030663;COPI coated vesicle membrane;0.000670714557397225!GO:0030126;COPI vesicle coat;0.000670714557397225!GO:0051028;mRNA transport;0.000689922168297294!GO:0051920;peroxiredoxin activity;0.000739968327933141!GO:0040008;regulation of growth;0.000741048845881593!GO:0006612;protein targeting to membrane;0.000757021991842267!GO:0006082;organic acid metabolic process;0.000812994969867315!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000823283374783922!GO:0015630;microtubule cytoskeleton;0.000835345956250757!GO:0019752;carboxylic acid metabolic process;0.000835345956250757!GO:0007050;cell cycle arrest;0.00084397638823291!GO:0006626;protein targeting to mitochondrion;0.000859169524655996!GO:0006695;cholesterol biosynthetic process;0.000862248183097708!GO:0016281;eukaryotic translation initiation factor 4F complex;0.000967912733252497!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00102607305974662!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00102607305974662!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00102607305974662!GO:0018196;peptidyl-asparagine modification;0.00103998577887306!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00103998577887306!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00110366588276639!GO:0003729;mRNA binding;0.00114247725673512!GO:0016310;phosphorylation;0.00114538976406034!GO:0031072;heat shock protein binding;0.00146719335818888!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00155860506685452!GO:0015399;primary active transmembrane transporter activity;0.00155860506685452!GO:0007006;mitochondrial membrane organization and biogenesis;0.00159770185798161!GO:0005815;microtubule organizing center;0.00168261774594748!GO:0022403;cell cycle phase;0.00171552273207676!GO:0006383;transcription from RNA polymerase III promoter;0.00174657698913701!GO:0006414;translational elongation;0.00180823989452377!GO:0000087;M phase of mitotic cell cycle;0.00185537531013691!GO:0030118;clathrin coat;0.0019145464672953!GO:0030137;COPI-coated vesicle;0.00193659740232564!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00197376563371889!GO:0048471;perinuclear region of cytoplasm;0.00197376563371889!GO:0016481;negative regulation of transcription;0.00197836565596034!GO:0065007;biological regulation;0.00202150444390641!GO:0007243;protein kinase cascade;0.00207533773606249!GO:0043284;biopolymer biosynthetic process;0.0021029088756729!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0021029088756729!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0021029088756729!GO:0051287;NAD binding;0.00210560485119661!GO:0006839;mitochondrial transport;0.00213925704352645!GO:0030658;transport vesicle membrane;0.00218145704161168!GO:0007067;mitosis;0.00228199564549678!GO:0050662;coenzyme binding;0.00229683979306599!GO:0048500;signal recognition particle;0.0023506662902398!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00239242920027482!GO:0006891;intra-Golgi vesicle-mediated transport;0.00243455094817782!GO:0030880;RNA polymerase complex;0.00251400361278496!GO:0031902;late endosome membrane;0.00253380185713769!GO:0006650;glycerophospholipid metabolic process;0.00258448970356121!GO:0030132;clathrin coat of coated pit;0.00264452269307354!GO:0043488;regulation of mRNA stability;0.00268400198300045!GO:0043487;regulation of RNA stability;0.00268400198300045!GO:0030029;actin filament-based process;0.00273106194119598!GO:0046489;phosphoinositide biosynthetic process;0.00273812167219659!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0027498943540571!GO:0048522;positive regulation of cellular process;0.00282878438552336!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00283415291776017!GO:0015002;heme-copper terminal oxidase activity;0.00283415291776017!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00283415291776017!GO:0004129;cytochrome-c oxidase activity;0.00283415291776017!GO:0003690;double-stranded DNA binding;0.00288500157964366!GO:0007264;small GTPase mediated signal transduction;0.00290974424779405!GO:0008033;tRNA processing;0.00296574234713548!GO:0051252;regulation of RNA metabolic process;0.00303166129301096!GO:0006979;response to oxidative stress;0.00317952504339009!GO:0031901;early endosome membrane;0.00326219224284638!GO:0030176;integral to endoplasmic reticulum membrane;0.00336850305859764!GO:0006818;hydrogen transport;0.0034080009886634!GO:0042802;identical protein binding;0.0034080009886634!GO:0005774;vacuolar membrane;0.00356493320875052!GO:0015992;proton transport;0.00360222099531437!GO:0051101;regulation of DNA binding;0.00396574147971466!GO:0051329;interphase of mitotic cell cycle;0.00407559810630766!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00426050237298226!GO:0016408;C-acyltransferase activity;0.00426158553890381!GO:0008154;actin polymerization and/or depolymerization;0.00453987333077877!GO:0044452;nucleolar part;0.00453987333077877!GO:0030027;lamellipodium;0.00456231049142505!GO:0004177;aminopeptidase activity;0.00475904582506115!GO:0022890;inorganic cation transmembrane transporter activity;0.00475904582506115!GO:0051087;chaperone binding;0.00488712642557244!GO:0033673;negative regulation of kinase activity;0.0052060483026545!GO:0006469;negative regulation of protein kinase activity;0.0052060483026545!GO:0048037;cofactor binding;0.00547890248334488!GO:0000049;tRNA binding;0.00559827626013842!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00559827626013842!GO:0045047;protein targeting to ER;0.00559827626013842!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00559827626013842!GO:0000428;DNA-directed RNA polymerase complex;0.00559827626013842!GO:0006509;membrane protein ectodomain proteolysis;0.00572890179442103!GO:0033619;membrane protein proteolysis;0.00572890179442103!GO:0006118;electron transport;0.00583036196021976!GO:0008186;RNA-dependent ATPase activity;0.00583036196021976!GO:0006595;polyamine metabolic process;0.00613664545446438!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00621622264468449!GO:0030041;actin filament polymerization;0.00629983103858675!GO:0030660;Golgi-associated vesicle membrane;0.00629983103858675!GO:0030119;AP-type membrane coat adaptor complex;0.00629983103858675!GO:0000059;protein import into nucleus, docking;0.00639904131961376!GO:0065009;regulation of a molecular function;0.00647577615084123!GO:0048487;beta-tubulin binding;0.00647577615084123!GO:0006778;porphyrin metabolic process;0.00648101513423436!GO:0033013;tetrapyrrole metabolic process;0.00648101513423436!GO:0051301;cell division;0.00649955935652019!GO:0006740;NADPH regeneration;0.00649955935652019!GO:0006098;pentose-phosphate shunt;0.00649955935652019!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00650438951332329!GO:0030134;ER to Golgi transport vesicle;0.00654196696381879!GO:0008632;apoptotic program;0.00662634446241709!GO:0030659;cytoplasmic vesicle membrane;0.0066343977885736!GO:0017166;vinculin binding;0.00665369850249314!GO:0051325;interphase;0.00674243670002333!GO:0005869;dynactin complex;0.00696057394404675!GO:0051128;regulation of cellular component organization and biogenesis;0.00704373768492128!GO:0008180;signalosome;0.00710965862918031!GO:0006352;transcription initiation;0.007133906377188!GO:0045045;secretory pathway;0.00721697404569315!GO:0042158;lipoprotein biosynthetic process;0.00784516024469696!GO:0051348;negative regulation of transferase activity;0.00794162942579813!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.00794162942579813!GO:0016363;nuclear matrix;0.00816601857050787!GO:0016272;prefoldin complex;0.00816601857050787!GO:0008312;7S RNA binding;0.00845144382817621!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00849212887610054!GO:0030125;clathrin vesicle coat;0.00877756788355605!GO:0030665;clathrin coated vesicle membrane;0.00877756788355605!GO:0046483;heterocycle metabolic process;0.00888560776270627!GO:0044437;vacuolar part;0.0089473301972004!GO:0007040;lysosome organization and biogenesis;0.00908986116387703!GO:0001726;ruffle;0.0091346022398112!GO:0043022;ribosome binding;0.00984047813097422!GO:0005684;U2-dependent spliceosome;0.0101731612948252!GO:0051539;4 iron, 4 sulfur cluster binding;0.0101731612948252!GO:0043492;ATPase activity, coupled to movement of substances;0.0102191397605047!GO:0008092;cytoskeletal protein binding;0.0102784784858493!GO:0030131;clathrin adaptor complex;0.0102835212974946!GO:0006497;protein amino acid lipidation;0.0103559061926597!GO:0008139;nuclear localization sequence binding;0.0104225044353474!GO:0005765;lysosomal membrane;0.0107264061296755!GO:0030127;COPII vesicle coat;0.0107271164213633!GO:0012507;ER to Golgi transport vesicle membrane;0.0107271164213633!GO:0045941;positive regulation of transcription;0.0111961129631346!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0112255326226936!GO:0051168;nuclear export;0.011494891942926!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0119506798347548!GO:0005665;DNA-directed RNA polymerase II, core complex;0.012395307790698!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0126495149169433!GO:0030145;manganese ion binding;0.012945595802491!GO:0042168;heme metabolic process;0.0130432903781925!GO:0008652;amino acid biosynthetic process;0.0130432903781925!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0130432903781925!GO:0033043;regulation of organelle organization and biogenesis;0.0130432903781925!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.0132574998128463!GO:0015631;tubulin binding;0.0135168860013454!GO:0003746;translation elongation factor activity;0.0135278741989983!GO:0016860;intramolecular oxidoreductase activity;0.0136786654989845!GO:0004004;ATP-dependent RNA helicase activity;0.0137832920303813!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0145092146347667!GO:0030521;androgen receptor signaling pathway;0.0145222053957798!GO:0006402;mRNA catabolic process;0.0145222053957798!GO:0006733;oxidoreduction coenzyme metabolic process;0.0145222053957798!GO:0007010;cytoskeleton organization and biogenesis;0.0145558135917497!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0148049241217625!GO:0051540;metal cluster binding;0.0150134382518001!GO:0051536;iron-sulfur cluster binding;0.0150134382518001!GO:0044433;cytoplasmic vesicle part;0.0154144745941665!GO:0005832;chaperonin-containing T-complex;0.0154454872103409!GO:0031625;ubiquitin protein ligase binding;0.0159162535113533!GO:0006506;GPI anchor biosynthetic process;0.016012234733122!GO:0031529;ruffle organization and biogenesis;0.0162231118001598!GO:0031543;peptidyl-proline dioxygenase activity;0.0165025566179726!GO:0016197;endosome transport;0.0165828085682846!GO:0035258;steroid hormone receptor binding;0.0167320754167649!GO:0006779;porphyrin biosynthetic process;0.0167320754167649!GO:0033014;tetrapyrrole biosynthetic process;0.0167320754167649!GO:0008637;apoptotic mitochondrial changes;0.0175370835768675!GO:0045792;negative regulation of cell size;0.0175370835768675!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0177757084156385!GO:0006769;nicotinamide metabolic process;0.0177881099119301!GO:0003711;transcription elongation regulator activity;0.018014717673552!GO:0048468;cell development;0.0180700607830128!GO:0051098;regulation of binding;0.0182197280508702!GO:0030308;negative regulation of cell growth;0.0182344340422759!GO:0007033;vacuole organization and biogenesis;0.0188058740074552!GO:0000339;RNA cap binding;0.0193012123740528!GO:0009303;rRNA transcription;0.0193360221317738!GO:0031323;regulation of cellular metabolic process;0.0197125910826578!GO:0016407;acetyltransferase activity;0.0198600604942665!GO:0006505;GPI anchor metabolic process;0.0201705429500911!GO:0006643;membrane lipid metabolic process;0.0202708340774517!GO:0005862;muscle thin filament tropomyosin;0.0205551533404167!GO:0045893;positive regulation of transcription, DNA-dependent;0.0209005336993397!GO:0012506;vesicle membrane;0.0209005336993397!GO:0006739;NADP metabolic process;0.0209007480505229!GO:0003684;damaged DNA binding;0.0215528084972223!GO:0007021;tubulin folding;0.0219130513389451!GO:0019798;procollagen-proline dioxygenase activity;0.0220828549497416!GO:0035035;histone acetyltransferase binding;0.0221691188837285!GO:0005637;nuclear inner membrane;0.0224194726880947!GO:0006520;amino acid metabolic process;0.0228270448081272!GO:0030384;phosphoinositide metabolic process;0.0228973488985081!GO:0051059;NF-kappaB binding;0.0230153347561312!GO:0031418;L-ascorbic acid binding;0.0232435453696149!GO:0031124;mRNA 3'-end processing;0.0233087338067232!GO:0005975;carbohydrate metabolic process;0.0240722417512837!GO:0045892;negative regulation of transcription, DNA-dependent;0.0247393039362404!GO:0009081;branched chain family amino acid metabolic process;0.024926033877331!GO:0043433;negative regulation of transcription factor activity;0.0249353290544925!GO:0006066;alcohol metabolic process;0.0251587517338796!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0253624698426776!GO:0006897;endocytosis;0.0253624698426776!GO:0010324;membrane invagination;0.0253624698426776!GO:0000096;sulfur amino acid metabolic process;0.0262363759356052!GO:0007179;transforming growth factor beta receptor signaling pathway;0.0264882181338169!GO:0006892;post-Golgi vesicle-mediated transport;0.026615614830602!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0266686039107001!GO:0010257;NADH dehydrogenase complex assembly;0.0266686039107001!GO:0033108;mitochondrial respiratory chain complex assembly;0.0266686039107001!GO:0030833;regulation of actin filament polymerization;0.0268183704215942!GO:0000786;nucleosome;0.0268183704215942!GO:0006289;nucleotide-excision repair;0.0271263940506283!GO:0006807;nitrogen compound metabolic process;0.0271273991779898!GO:0006767;water-soluble vitamin metabolic process;0.0271825448936378!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.0275182505330286!GO:0006007;glucose catabolic process;0.0280953363994385!GO:0004860;protein kinase inhibitor activity;0.0284804956498859!GO:0031272;regulation of pseudopodium formation;0.0284804956498859!GO:0031269;pseudopodium formation;0.0284804956498859!GO:0031344;regulation of cell projection organization and biogenesis;0.0284804956498859!GO:0031268;pseudopodium organization and biogenesis;0.0284804956498859!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0284804956498859!GO:0031274;positive regulation of pseudopodium formation;0.0284804956498859!GO:0016125;sterol metabolic process;0.0284804956498859!GO:0006350;transcription;0.0310724275018724!GO:0004722;protein serine/threonine phosphatase activity;0.0315426533808557!GO:0006401;RNA catabolic process;0.0318565917808845!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.03229988981174!GO:0006417;regulation of translation;0.0323795996574297!GO:0030508;thiol-disulfide exchange intermediate activity;0.0325182339355722!GO:0009308;amine metabolic process;0.0327911908613358!GO:0000209;protein polyubiquitination;0.0329622784464632!GO:0006783;heme biosynthetic process;0.0331151263203989!GO:0005758;mitochondrial intermembrane space;0.0331703968355591!GO:0008168;methyltransferase activity;0.0332112540422466!GO:0033559;unsaturated fatty acid metabolic process;0.0332417246998393!GO:0006636;unsaturated fatty acid biosynthetic process;0.0332417246998393!GO:0007034;vacuolar transport;0.0332854680859343!GO:0008097;5S rRNA binding;0.0338634212153056!GO:0051235;maintenance of localization;0.0339966701107468!GO:0016741;transferase activity, transferring one-carbon groups;0.0349610343897759!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.035752502415099!GO:0046519;sphingoid metabolic process;0.0363555677633983!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0374162652675475!GO:0046822;regulation of nucleocytoplasmic transport;0.0375955669616599!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0377034163227505!GO:0030911;TPR domain binding;0.0389493584868515!GO:0006672;ceramide metabolic process;0.0390640869609587!GO:0019318;hexose metabolic process;0.0395145905896182!GO:0022408;negative regulation of cell-cell adhesion;0.0395145905896182!GO:0016251;general RNA polymerase II transcription factor activity;0.0397985864963404!GO:0050178;phenylpyruvate tautomerase activity;0.0398811711281458!GO:0050681;androgen receptor binding;0.0401812962897567!GO:0009225;nucleotide-sugar metabolic process;0.0406700452586256!GO:0006354;RNA elongation;0.0409882070964287!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0411028525486306!GO:0015036;disulfide oxidoreductase activity;0.0411072242943487!GO:0005996;monosaccharide metabolic process;0.0411160850810405!GO:0044255;cellular lipid metabolic process;0.0411160850810405!GO:0000082;G1/S transition of mitotic cell cycle;0.0412257300708436!GO:0005100;Rho GTPase activator activity;0.0412257300708436!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;0.0416297538187172!GO:0048518;positive regulation of biological process;0.0423913181789188!GO:0006611;protein export from nucleus;0.0423913181789188!GO:0050811;GABA receptor binding;0.0424931026149768!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0424931026149768!GO:0032940;secretion by cell;0.0429238005352365!GO:0009967;positive regulation of signal transduction;0.0437923848660939!GO:0008538;proteasome activator activity;0.0440279015628135!GO:0008047;enzyme activator activity;0.04437071587619!GO:0006376;mRNA splice site selection;0.04437071587619!GO:0000389;nuclear mRNA 3'-splice site recognition;0.04437071587619!GO:0008022;protein C-terminus binding;0.0445378985136394!GO:0001872;zymosan binding;0.0447210944529456!GO:0001878;response to yeast;0.0447210944529456!GO:0019362;pyridine nucleotide metabolic process;0.0448459048337907!GO:0040029;regulation of gene expression, epigenetic;0.0448459048337907!GO:0006644;phospholipid metabolic process;0.0448592350698686!GO:0006790;sulfur metabolic process;0.0456812077948831!GO:0044438;microbody part;0.0461344210151325!GO:0044439;peroxisomal part;0.0461344210151325!GO:0000792;heterochromatin;0.0461344210151325!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0461922891955383!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0461922891955383!GO:0006984;ER-nuclear signaling pathway;0.0461922891955383!GO:0010468;regulation of gene expression;0.0465861177885007!GO:0045926;negative regulation of growth;0.0466882035362603!GO:0003756;protein disulfide isomerase activity;0.0468159082527176!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0468159082527176!GO:0008287;protein serine/threonine phosphatase complex;0.04762138942276!GO:0006635;fatty acid beta-oxidation;0.0477075040300517!GO:0031371;ubiquitin conjugating enzyme complex;0.0477075040300517!GO:0030433;ER-associated protein catabolic process;0.0477075040300517!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0477075040300517!GO:0016791;phosphoric monoester hydrolase activity;0.0477075040300517!GO:0003988;acetyl-CoA C-acyltransferase activity;0.0479271463730745!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0483875686989497!GO:0000118;histone deacetylase complex;0.0485172358477369!GO:0007030;Golgi organization and biogenesis;0.0487001883133681!GO:0030031;cell projection biogenesis;0.048843911645523!GO:0030518;steroid hormone receptor signaling pathway;0.0490265509741727!GO:0000287;magnesium ion binding;0.0495084649493488!GO:0005819;spindle;0.0498768914235228 | |||
|sample_id=11462 | |sample_id=11462 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 104: | ||
|sample_tissue=spinal cord | |sample_tissue=spinal cord | ||
|top_motifs=GZF1:1.75588598324;RXR{A,B,G}:1.57255888998;HES1:1.31228423721;HOX{A5,B5}:1.21382168085;TFAP4:1.11789091164;AIRE:1.10067934309;DBP:0.949627362268;GFI1B:0.875235231188;FOXL1:0.875163466871;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.868308550736;ESR1:0.867277846996;EN1,2:0.84898744983;ATF6:0.840381255422;EBF1:0.803277137446;ZIC1..3:0.75903997735;PAX5:0.73986818849;UFEwm:0.712941104984;ZNF423:0.694175682693;ZNF238:0.693187674573;PAX1,9:0.686879948951;bHLH_family:0.679936813161;ONECUT1,2:0.624005403823;PATZ1:0.620987015376;NKX2-2,8:0.607387463917;NR3C1:0.600005676447;ADNP_IRX_SIX_ZHX:0.561268327594;NFATC1..3:0.552912590883;TEAD1:0.546990576218;NR6A1:0.534965695995;NFIX:0.527276780127;SRF:0.523511407807;NANOG{mouse}:0.520066137016;NKX2-1,4:0.513145260515;GLI1..3:0.500728454166;ZBTB6:0.498027162272;MYBL2:0.474025864083;NKX2-3_NKX2-5:0.467476873781;MAFB:0.458887510947;MZF1:0.450757944652;STAT2,4,6:0.447377315196;LHX3,4:0.440163829717;NR1H4:0.436646420944;HIF1A:0.43630313377;TLX1..3_NFIC{dimer}:0.43064469493;NKX3-1:0.411565133419;KLF4:0.394804237742;PAX8:0.391415173707;RXRA_VDR{dimer}:0.381096072922;FOXD3:0.360433076497;NKX6-1,2:0.350634826255;TFCP2:0.329619102562;GTF2A1,2:0.321192252544;NR5A1,2:0.316183792805;EVI1:0.30450915147;RREB1:0.304299802024;TP53:0.302431845515;TBX4,5:0.280483148321;HLF:0.279986134664;TAL1_TCF{3,4,12}:0.277033543511;TEF:0.259481091796;XBP1:0.255027521161;MAZ:0.2405967819;CEBPA,B_DDIT3:0.214474921603;GTF2I:0.21425118451;YY1:0.212101412848;HNF4A_NR2F1,2:0.211444240999;SOX17:0.202944685698;NFE2L1:0.200479653851;ALX4:0.196800624976;HAND1,2:0.183508407164;ESRRA:0.164949631761;IKZF1:0.157131082519;FOX{I1,J2}:0.140441192668;POU1F1:0.138218653751;NHLH1,2:0.138073101182;AHR_ARNT_ARNT2:0.134569584377;GFI1:0.134564385487;PAX4:0.126298718206;SREBF1,2:0.1210508686;TFAP2B:0.120093130652;ZNF384:0.118993157924;PPARG:0.114883407343;ARID5B:0.110690594687;HIC1:0.104858707112;HNF1A:0.096179012332;ZNF148:0.0733558219154;BACH2:0.0673808202304;PRDM1:0.0460708709214;TGIF1:0.0442749265685;FOXO1,3,4:0.0410967057562;SPZ1:0.0356274205328;SP1:0.0321060687358;RUNX1..3:0.0282076794735;PRRX1,2:0.0251666015399;MEF2{A,B,C,D}:0.0118582451916;DMAP1_NCOR{1,2}_SMARC:0.00843725265459;REST:0.00676445338827;HMX1:0.00641858230595;NFE2:0.0039172353819;LEF1_TCF7_TCF7L1,2:-0.000751655062666;NFE2L2:-0.00769644658577;AR:-0.00826511985036;PDX1:-0.012595117403;FOX{F1,F2,J1}:-0.0153044634775;FOSL2:-0.0154061994373;TBP:-0.0214376239268;RFX1:-0.0258509530189;FOXQ1:-0.0377421964363;CRX:-0.0396886262903;XCPE1{core}:-0.053364249053;MED-1{core}:-0.0544111389611;EGR1..3:-0.0613002786568;FOS_FOS{B,L1}_JUN{B,D}:-0.0643236502515;ZNF143:-0.0708462518591;TFAP2{A,C}:-0.0820753661942;RBPJ:-0.0962307705189;ELK1,4_GABP{A,B1}:-0.112422713253;STAT1,3:-0.116547457388;MTE{core}:-0.119522929103;FOXP3:-0.123222257476;STAT5{A,B}:-0.149466740281;PBX1:-0.16615625927;MYFfamily:-0.169586730428;PAX6:-0.192769763315;HMGA1,2:-0.194418683709;GATA4:-0.201149732132;POU6F1:-0.206668570472;HBP1_HMGB_SSRP1_UBTF:-0.206902050117;NFIL3:-0.221109554263;NKX3-2:-0.224592124625;SOX2:-0.236926103722;HOX{A4,D4}:-0.237137257599;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.244544786232;SOX5:-0.254999106701;BPTF:-0.286665361971;ZFP161:-0.286928977258;NFKB1_REL_RELA:-0.293947373352;SMAD1..7,9:-0.295592613981;CREB1:-0.305249998579;RORA:-0.3138157317;TFDP1:-0.319320710264;FOXA2:-0.32150392416;JUN:-0.321509263174;T:-0.346651633336;CDX1,2,4:-0.371024055288;HSF1,2:-0.386884800648;NRF1:-0.388093212896;MYOD1:-0.392344565288;MTF1:-0.395284458466;IRF1,2:-0.404491150998;ATF2:-0.405859249614;BREu{core}:-0.412106524828;POU5F1:-0.414866232332;RFX2..5_RFXANK_RFXAP:-0.417275011266;POU2F1..3:-0.429263165212;GCM1,2:-0.442310456911;IRF7:-0.443799439084;LMO2:-0.444273606192;SNAI1..3:-0.451586984582;SPI1:-0.473505489153;IKZF2:-0.478726012162;MYB:-0.479291010834;PAX2:-0.510321642435;TOPORS:-0.512788614156;ATF4:-0.516863949813;CUX2:-0.518521583909;FOXM1:-0.519319259538;POU3F1..4:-0.519515023375;FOX{D1,D2}:-0.539798971053;ATF5_CREB3:-0.549123434545;GATA6:-0.562620937335;CDC5L:-0.565635948236;SOX{8,9,10}:-0.566475694843;ETS1,2:-0.567211907736;PAX3,7:-0.576066565384;ZEB1:-0.594435086459;FOXP1:-0.599134740465;SPIB:-0.631374245684;ELF1,2,4:-0.655840552963;OCT4_SOX2{dimer}:-0.673678138381;FOXN1:-0.682640744183;NANOG:-0.720820460217;ALX1:-0.732525364568;HOXA9_MEIS1:-0.77316544319;HOX{A6,A7,B6,B7}:-0.780552739006;EP300:-0.811497500076;E2F1..5:-0.81621455474;ZBTB16:-0.838372724114;NFY{A,B,C}:-0.848674578466;TLX2:-1.13075368576;VSX1,2:-1.21408172618;PITX1..3:-1.59356786844 | |top_motifs=GZF1:1.75588598324;RXR{A,B,G}:1.57255888998;HES1:1.31228423721;HOX{A5,B5}:1.21382168085;TFAP4:1.11789091164;AIRE:1.10067934309;DBP:0.949627362268;GFI1B:0.875235231188;FOXL1:0.875163466871;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.868308550736;ESR1:0.867277846996;EN1,2:0.84898744983;ATF6:0.840381255422;EBF1:0.803277137446;ZIC1..3:0.75903997735;PAX5:0.73986818849;UFEwm:0.712941104984;ZNF423:0.694175682693;ZNF238:0.693187674573;PAX1,9:0.686879948951;bHLH_family:0.679936813161;ONECUT1,2:0.624005403823;PATZ1:0.620987015376;NKX2-2,8:0.607387463917;NR3C1:0.600005676447;ADNP_IRX_SIX_ZHX:0.561268327594;NFATC1..3:0.552912590883;TEAD1:0.546990576218;NR6A1:0.534965695995;NFIX:0.527276780127;SRF:0.523511407807;NANOG{mouse}:0.520066137016;NKX2-1,4:0.513145260515;GLI1..3:0.500728454166;ZBTB6:0.498027162272;MYBL2:0.474025864083;NKX2-3_NKX2-5:0.467476873781;MAFB:0.458887510947;MZF1:0.450757944652;STAT2,4,6:0.447377315196;LHX3,4:0.440163829717;NR1H4:0.436646420944;HIF1A:0.43630313377;TLX1..3_NFIC{dimer}:0.43064469493;NKX3-1:0.411565133419;KLF4:0.394804237742;PAX8:0.391415173707;RXRA_VDR{dimer}:0.381096072922;FOXD3:0.360433076497;NKX6-1,2:0.350634826255;TFCP2:0.329619102562;GTF2A1,2:0.321192252544;NR5A1,2:0.316183792805;EVI1:0.30450915147;RREB1:0.304299802024;TP53:0.302431845515;TBX4,5:0.280483148321;HLF:0.279986134664;TAL1_TCF{3,4,12}:0.277033543511;TEF:0.259481091796;XBP1:0.255027521161;MAZ:0.2405967819;CEBPA,B_DDIT3:0.214474921603;GTF2I:0.21425118451;YY1:0.212101412848;HNF4A_NR2F1,2:0.211444240999;SOX17:0.202944685698;NFE2L1:0.200479653851;ALX4:0.196800624976;HAND1,2:0.183508407164;ESRRA:0.164949631761;IKZF1:0.157131082519;FOX{I1,J2}:0.140441192668;POU1F1:0.138218653751;NHLH1,2:0.138073101182;AHR_ARNT_ARNT2:0.134569584377;GFI1:0.134564385487;PAX4:0.126298718206;SREBF1,2:0.1210508686;TFAP2B:0.120093130652;ZNF384:0.118993157924;PPARG:0.114883407343;ARID5B:0.110690594687;HIC1:0.104858707112;HNF1A:0.096179012332;ZNF148:0.0733558219154;BACH2:0.0673808202304;PRDM1:0.0460708709214;TGIF1:0.0442749265685;FOXO1,3,4:0.0410967057562;SPZ1:0.0356274205328;SP1:0.0321060687358;RUNX1..3:0.0282076794735;PRRX1,2:0.0251666015399;MEF2{A,B,C,D}:0.0118582451916;DMAP1_NCOR{1,2}_SMARC:0.00843725265459;REST:0.00676445338827;HMX1:0.00641858230595;NFE2:0.0039172353819;LEF1_TCF7_TCF7L1,2:-0.000751655062666;NFE2L2:-0.00769644658577;AR:-0.00826511985036;PDX1:-0.012595117403;FOX{F1,F2,J1}:-0.0153044634775;FOSL2:-0.0154061994373;TBP:-0.0214376239268;RFX1:-0.0258509530189;FOXQ1:-0.0377421964363;CRX:-0.0396886262903;XCPE1{core}:-0.053364249053;MED-1{core}:-0.0544111389611;EGR1..3:-0.0613002786568;FOS_FOS{B,L1}_JUN{B,D}:-0.0643236502515;ZNF143:-0.0708462518591;TFAP2{A,C}:-0.0820753661942;RBPJ:-0.0962307705189;ELK1,4_GABP{A,B1}:-0.112422713253;STAT1,3:-0.116547457388;MTE{core}:-0.119522929103;FOXP3:-0.123222257476;STAT5{A,B}:-0.149466740281;PBX1:-0.16615625927;MYFfamily:-0.169586730428;PAX6:-0.192769763315;HMGA1,2:-0.194418683709;GATA4:-0.201149732132;POU6F1:-0.206668570472;HBP1_HMGB_SSRP1_UBTF:-0.206902050117;NFIL3:-0.221109554263;NKX3-2:-0.224592124625;SOX2:-0.236926103722;HOX{A4,D4}:-0.237137257599;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.244544786232;SOX5:-0.254999106701;BPTF:-0.286665361971;ZFP161:-0.286928977258;NFKB1_REL_RELA:-0.293947373352;SMAD1..7,9:-0.295592613981;CREB1:-0.305249998579;RORA:-0.3138157317;TFDP1:-0.319320710264;FOXA2:-0.32150392416;JUN:-0.321509263174;T:-0.346651633336;CDX1,2,4:-0.371024055288;HSF1,2:-0.386884800648;NRF1:-0.388093212896;MYOD1:-0.392344565288;MTF1:-0.395284458466;IRF1,2:-0.404491150998;ATF2:-0.405859249614;BREu{core}:-0.412106524828;POU5F1:-0.414866232332;RFX2..5_RFXANK_RFXAP:-0.417275011266;POU2F1..3:-0.429263165212;GCM1,2:-0.442310456911;IRF7:-0.443799439084;LMO2:-0.444273606192;SNAI1..3:-0.451586984582;SPI1:-0.473505489153;IKZF2:-0.478726012162;MYB:-0.479291010834;PAX2:-0.510321642435;TOPORS:-0.512788614156;ATF4:-0.516863949813;CUX2:-0.518521583909;FOXM1:-0.519319259538;POU3F1..4:-0.519515023375;FOX{D1,D2}:-0.539798971053;ATF5_CREB3:-0.549123434545;GATA6:-0.562620937335;CDC5L:-0.565635948236;SOX{8,9,10}:-0.566475694843;ETS1,2:-0.567211907736;PAX3,7:-0.576066565384;ZEB1:-0.594435086459;FOXP1:-0.599134740465;SPIB:-0.631374245684;ELF1,2,4:-0.655840552963;OCT4_SOX2{dimer}:-0.673678138381;FOXN1:-0.682640744183;NANOG:-0.720820460217;ALX1:-0.732525364568;HOXA9_MEIS1:-0.77316544319;HOX{A6,A7,B6,B7}:-0.780552739006;EP300:-0.811497500076;E2F1..5:-0.81621455474;ZBTB16:-0.838372724114;NFY{A,B,C}:-0.848674578466;TLX2:-1.13075368576;VSX1,2:-1.21408172618;PITX1..3:-1.59356786844 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11462-119B4;search_select_hide=table117:FF:11462-119B4 | |||
}} | }} | ||
Latest revision as of 18:03, 4 June 2020
| Name: | Nucleus Pulposus Cell, donor3 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12063 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12063
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12063
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.751 |
| 10 | 10 | 0.728 |
| 100 | 100 | 0.965 |
| 101 | 101 | 0.284 |
| 102 | 102 | 0.4 |
| 103 | 103 | 0.102 |
| 104 | 104 | 0.441 |
| 105 | 105 | 0.555 |
| 106 | 106 | 0.199 |
| 107 | 107 | 0.0054 |
| 108 | 108 | 0.159 |
| 109 | 109 | 0.239 |
| 11 | 11 | 0.115 |
| 110 | 110 | 0.251 |
| 111 | 111 | 0.971 |
| 112 | 112 | 0.98 |
| 113 | 113 | 0.365 |
| 114 | 114 | 0.917 |
| 115 | 115 | 0.643 |
| 116 | 116 | 0.0116 |
| 117 | 117 | 0.563 |
| 118 | 118 | 0.662 |
| 119 | 119 | 0.772 |
| 12 | 12 | 0.298 |
| 120 | 120 | 0.0291 |
| 121 | 121 | 0.275 |
| 122 | 122 | 0.0951 |
| 123 | 123 | 0.0025 |
| 124 | 124 | 0.558 |
| 125 | 125 | 0.497 |
| 126 | 126 | 0.457 |
| 127 | 127 | 0.914 |
| 128 | 128 | 0.104 |
| 129 | 129 | 0.603 |
| 13 | 13 | 0.483 |
| 130 | 130 | 0.484 |
| 131 | 131 | 0.531 |
| 132 | 132 | 0.0909 |
| 133 | 133 | 0.682 |
| 134 | 134 | 0.272 |
| 135 | 135 | 0.418 |
| 136 | 136 | 0.712 |
| 137 | 137 | 0.0243 |
| 138 | 138 | 0.662 |
| 139 | 139 | 0.323 |
| 14 | 14 | 0.688 |
| 140 | 140 | 0.375 |
| 141 | 141 | 0.051 |
| 142 | 142 | 0.3 |
| 143 | 143 | 0.437 |
| 144 | 144 | 0.897 |
| 145 | 145 | 0.312 |
| 146 | 146 | 0.388 |
| 147 | 147 | 0.227 |
| 148 | 148 | 0.877 |
| 149 | 149 | 0.073 |
| 15 | 15 | 0.839 |
| 150 | 150 | 0.708 |
| 151 | 151 | 0.655 |
| 152 | 152 | 0.203 |
| 153 | 153 | 0.935 |
| 154 | 154 | 0.0654 |
| 155 | 155 | 0.284 |
| 156 | 156 | 0.285 |
| 157 | 157 | 0.739 |
| 158 | 158 | 0.198 |
| 159 | 159 | 0.299 |
| 16 | 16 | 0.06 |
| 160 | 160 | 0.179 |
| 161 | 161 | 0.684 |
| 162 | 162 | 0.153 |
| 163 | 163 | 0.887 |
| 164 | 164 | 0.141 |
| 165 | 165 | 0.221 |
| 166 | 166 | 0.442 |
| 167 | 167 | 0.27 |
| 168 | 168 | 0.712 |
| 169 | 169 | 0.0901 |
| 17 | 17 | 0.0991 |
| 18 | 18 | 0.0329 |
| 19 | 19 | 0.029 |
| 2 | 2 | 0.193 |
| 20 | 20 | 0.876 |
| 21 | 21 | 0.571 |
| 22 | 22 | 0.101 |
| 23 | 23 | 0.105 |
| 24 | 24 | 0.941 |
| 25 | 25 | 0.603 |
| 26 | 26 | 0.586 |
| 27 | 27 | 0.107 |
| 28 | 28 | 0.0639 |
| 29 | 29 | 0.118 |
| 3 | 3 | 0.243 |
| 30 | 30 | 0.168 |
| 31 | 31 | 0.354 |
| 32 | 32 | 6.3502e-10 |
| 33 | 33 | 0.168 |
| 34 | 34 | 0.576 |
| 35 | 35 | 0.494 |
| 36 | 36 | 0.178 |
| 37 | 37 | 0.0617 |
| 38 | 38 | 0.908 |
| 39 | 39 | 0.475 |
| 4 | 4 | 0.0927 |
| 40 | 40 | 0.96 |
| 41 | 41 | 0.0677 |
| 42 | 42 | 0.812 |
| 43 | 43 | 0.519 |
| 44 | 44 | 0.076 |
| 45 | 45 | 0.456 |
| 46 | 46 | 0.148 |
| 47 | 47 | 0.956 |
| 48 | 48 | 0.755 |
| 49 | 49 | 0.564 |
| 5 | 5 | 0.779 |
| 50 | 50 | 0.611 |
| 51 | 51 | 0.61 |
| 52 | 52 | 0.486 |
| 53 | 53 | 0.115 |
| 54 | 54 | 0.417 |
| 55 | 55 | 0.621 |
| 56 | 56 | 0.343 |
| 57 | 57 | 0.783 |
| 58 | 58 | 0.436 |
| 59 | 59 | 0.0191 |
| 6 | 6 | 0.661 |
| 60 | 60 | 0.445 |
| 61 | 61 | 0.755 |
| 62 | 62 | 0.935 |
| 63 | 63 | 0.527 |
| 64 | 64 | 0.778 |
| 65 | 65 | 0.148 |
| 66 | 66 | 0.786 |
| 67 | 67 | 0.881 |
| 68 | 68 | 0.34 |
| 69 | 69 | 0.0553 |
| 7 | 7 | 0.687 |
| 70 | 70 | 0.272 |
| 71 | 71 | 0.634 |
| 72 | 72 | 0.539 |
| 73 | 73 | 0.04 |
| 74 | 74 | 0.885 |
| 75 | 75 | 0.5 |
| 76 | 76 | 0.561 |
| 77 | 77 | 0.0489 |
| 78 | 78 | 0.813 |
| 79 | 79 | 0.182 |
| 8 | 8 | 0.0871 |
| 80 | 80 | 0.96 |
| 81 | 81 | 0.786 |
| 82 | 82 | 0.436 |
| 83 | 83 | 0.823 |
| 84 | 84 | 0.501 |
| 85 | 85 | 0.156 |
| 86 | 86 | 0.791 |
| 87 | 87 | 0.981 |
| 88 | 88 | 0.69 |
| 89 | 89 | 0.0135 |
| 9 | 9 | 0.133 |
| 90 | 90 | 0.439 |
| 91 | 91 | 0.685 |
| 92 | 92 | 0.0652 |
| 93 | 93 | 0.28 |
| 94 | 94 | 0.17 |
| 95 | 95 | 0.245 |
| 96 | 96 | 0.598 |
| 97 | 97 | 0.52 |
| 98 | 98 | 0.389 |
| 99 | 99 | 3.64488e-4 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12063
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000123 human nucleus pulposus cell of intervertebral disc sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0002564 (nucleus pulposus cell of intervertebral disc)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002384 (connective tissue)
0000479 (tissue)
0011216 (organ system subdivision)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0004905 (articulation)
0011135 (intervertebral cartilage)
0000075 (subdivision of skeletal system)
0002216 (symphysis)
0004765 (skeletal element)
0011134 (nonsynovial joint)
0002209 (fibrous joint)
0002213 (cartilaginous joint)
0000982 (skeletal joint)
0010317 (germ layer / neural crest derived structure)
0007844 (cartilage element)
0002242 (nucleus pulposus)
0002204 (musculoskeletal system)
0001434 (skeletal system)
0004770 (articular system)
0011138 (post-cranial axial skeletal system)
0001130 (vertebral column)
0001066 (intervertebral disk)
0001468 (intervertebral joint)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000123 (human nucleus pulposus cell of intervertebral disc sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA
