FF:11888-125D7: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet= | |DRA_sample_Accession=CAGE@SAMD00005146 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |accession_numbers=CAGE;DRX008143;DRR009015;DRZ000440;DRZ001825;DRZ011790;DRZ013175 | ||
|ancestors_in_anatomy_facet= | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000325,CL:0000473,CL:0000234,CL:0000738,CL:0002087,CL:0000255,CL:0000576,CL:0000860,CL:0002057 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000625,FF:0000350,FF:0000635,FF:0011104 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 42: | ||
|fonse_treatment_closure=FF:0000625,FF:0000635,FF:0011104,FF:11888-125D7 | |fonse_treatment_closure=FF:0000625,FF:0000635,FF:0011104,FF:11888-125D7 | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Candida%252c%2520donor3.CNhs13494.11888-125D7.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Candida%252c%2520donor3.CNhs13494.11888-125D7.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Candida%252c%2520donor3.CNhs13494.11888-125D7.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Candida%252c%2520donor3.CNhs13494.11888-125D7.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Candida%252c%2520donor3.CNhs13494.11888-125D7.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11888-125D7 | |id=FF:11888-125D7 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0011104 | ||
|is_obsolete= | |||
|library_id=CNhs13494 | |||
|library_id_phase_based=2:CNhs13494 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11888 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11888 | |||
|name=CD14+ monocytes - treated with Candida, donor3 | |name=CD14+ monocytes - treated with Candida, donor3 | ||
|namespace= | |namespace= | ||
| Line 42: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs13494,LSID1025,release012,COMPLETED | |profile_hcage=CNhs13494,LSID1025,release012,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=125 | |rna_box=125 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 79: | ||
|rna_weight_ug=2.996145 | |rna_weight_ug=2.996145 | ||
|sample_age=21 | |sample_age=21 | ||
|sample_category=primary cells | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 92: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;4.23030639626298e-309!GO:0005737;cytoplasm;1.59280699725915e-120!GO:0043227;membrane-bound organelle;3.54090701650692e-94!GO:0043231;intracellular membrane-bound organelle;7.16905171004197e-94!GO:0043226;organelle;7.24688021043702e-88!GO:0043229;intracellular organelle;3.76178272700739e-87!GO:0044444;cytoplasmic part;2.53253497768676e-80!GO:0005515;protein binding;2.93946919719226e-75!GO:0044422;organelle part;2.14940543461641e-69!GO:0044446;intracellular organelle part;6.59841143959004e-68!GO:0032991;macromolecular complex;6.46834597098173e-60!GO:0044237;cellular metabolic process;2.48891962795405e-55!GO:0044238;primary metabolic process;1.49502895008998e-54!GO:0030529;ribonucleoprotein complex;7.30737517912e-50!GO:0043170;macromolecule metabolic process;2.66650436479738e-49!GO:0003723;RNA binding;3.51947996540146e-49!GO:0019538;protein metabolic process;9.15675272024788e-48!GO:0044267;cellular protein metabolic process;6.79077157919599e-45!GO:0044428;nuclear part;6.79077157919599e-45!GO:0044260;cellular macromolecule metabolic process;2.01000555054508e-44!GO:0006412;translation;1.55128465003449e-39!GO:0043233;organelle lumen;3.80233258299988e-37!GO:0031974;membrane-enclosed lumen;3.80233258299988e-37!GO:0033036;macromolecule localization;6.08779716917265e-37!GO:0045184;establishment of protein localization;6.37658952343201e-36!GO:0005829;cytosol;8.09198672340316e-36!GO:0015031;protein transport;8.97072131269612e-36!GO:0012501;programmed cell death;1.21571555192642e-34!GO:0006915;apoptosis;1.21601641105638e-34!GO:0008104;protein localization;2.95608716949918e-34!GO:0008219;cell death;4.04566121889617e-33!GO:0016265;death;4.04566121889617e-33!GO:0005634;nucleus;4.35287933951462e-32!GO:0009058;biosynthetic process;6.00550522231721e-32!GO:0043234;protein complex;5.2761501762444e-31!GO:0044249;cellular biosynthetic process;1.26601267344155e-30!GO:0016071;mRNA metabolic process;1.87723122078889e-30!GO:0009059;macromolecule biosynthetic process;2.9529850353916e-30!GO:0031090;organelle membrane;4.06630968135759e-30!GO:0006396;RNA processing;4.34804282469843e-29!GO:0031981;nuclear lumen;1.60939832618003e-28!GO:0008380;RNA splicing;2.76571502315107e-26!GO:0005840;ribosome;2.76571502315107e-26!GO:0006397;mRNA processing;1.48507913636707e-25!GO:0005739;mitochondrion;1.82387812486549e-25!GO:0046907;intracellular transport;2.40588713400061e-25!GO:0016043;cellular component organization and biogenesis;2.44360652889069e-25!GO:0003735;structural constituent of ribosome;1.73914203882331e-24!GO:0006886;intracellular protein transport;1.97885678599526e-24!GO:0033279;ribosomal subunit;9.29172480128466e-24!GO:0042981;regulation of apoptosis;4.4309548424394e-23!GO:0005830;cytosolic ribosome (sensu Eukaryota);6.23750903185242e-23!GO:0043067;regulation of programmed cell death;8.45461727142515e-23!GO:0043283;biopolymer metabolic process;3.38721488235231e-22!GO:0031967;organelle envelope;1.50797709795636e-21!GO:0031975;envelope;2.51102199317543e-21!GO:0044445;cytosolic part;8.6022359219498e-21!GO:0005681;spliceosome;2.18350721587472e-20!GO:0010467;gene expression;3.03946987047525e-20!GO:0008134;transcription factor binding;4.04463760934928e-20!GO:0000166;nucleotide binding;5.40035749936424e-20!GO:0065003;macromolecular complex assembly;7.07161440192105e-20!GO:0005654;nucleoplasm;7.82901139655068e-20!GO:0051649;establishment of cellular localization;1.80787994854648e-19!GO:0051641;cellular localization;5.92893099760242e-19!GO:0048523;negative regulation of cellular process;1.02104986127079e-18!GO:0044429;mitochondrial part;1.52001490826442e-18!GO:0017111;nucleoside-triphosphatase activity;6.56120443292772e-17!GO:0048519;negative regulation of biological process;6.71599871853052e-17!GO:0016462;pyrophosphatase activity;6.95277325415197e-17!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.00720589442293e-16!GO:0016817;hydrolase activity, acting on acid anhydrides;1.08304435815783e-16!GO:0007243;protein kinase cascade;1.19498557318598e-16!GO:0022607;cellular component assembly;1.32679060187074e-16!GO:0044451;nucleoplasm part;1.78338952007614e-16!GO:0022613;ribonucleoprotein complex biogenesis and assembly;3.3227522723019e-16!GO:0006512;ubiquitin cycle;3.71465316946083e-16!GO:0044265;cellular macromolecule catabolic process;5.12165686841104e-16!GO:0043412;biopolymer modification;7.53770147786225e-16!GO:0002376;immune system process;9.3510526114273e-16!GO:0007242;intracellular signaling cascade;1.13559541666194e-15!GO:0016192;vesicle-mediated transport;1.49360013784609e-15!GO:0048770;pigment granule;1.56885205914518e-15!GO:0042470;melanosome;1.56885205914518e-15!GO:0043069;negative regulation of programmed cell death;2.57138662539617e-15!GO:0043066;negative regulation of apoptosis;3.15033942779525e-15!GO:0006119;oxidative phosphorylation;3.53852590754548e-15!GO:0006464;protein modification process;7.49514676200579e-15!GO:0005773;vacuole;1.02182855866952e-14!GO:0043285;biopolymer catabolic process;1.85768910856627e-14!GO:0032553;ribonucleotide binding;1.92414417980093e-14!GO:0032555;purine ribonucleotide binding;1.92414417980093e-14!GO:0043687;post-translational protein modification;3.46946984868176e-14!GO:0022618;protein-RNA complex assembly;4.02817896571101e-14!GO:0017076;purine nucleotide binding;5.67713619316789e-14!GO:0009057;macromolecule catabolic process;6.13537138342987e-14!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;6.15333416913021e-14!GO:0006950;response to stress;8.34223688638986e-14!GO:0005740;mitochondrial envelope;1.45054662581733e-13!GO:0007249;I-kappaB kinase/NF-kappaB cascade;1.84552054316914e-13!GO:0006605;protein targeting;1.93693057640195e-13!GO:0065009;regulation of a molecular function;2.41886238995037e-13!GO:0031966;mitochondrial membrane;4.15021075201274e-13!GO:0003712;transcription cofactor activity;4.9721381134513e-13!GO:0044248;cellular catabolic process;5.86857339638351e-13!GO:0006913;nucleocytoplasmic transport;8.43474953287223e-13!GO:0019941;modification-dependent protein catabolic process;9.63895981206518e-13!GO:0043632;modification-dependent macromolecule catabolic process;9.63895981206518e-13!GO:0044257;cellular protein catabolic process;1.20548571230351e-12!GO:0051603;proteolysis involved in cellular protein catabolic process;1.34351322972298e-12!GO:0019866;organelle inner membrane;1.35563604527791e-12!GO:0000323;lytic vacuole;1.41598211054241e-12!GO:0005764;lysosome;1.41598211054241e-12!GO:0006511;ubiquitin-dependent protein catabolic process;1.41598211054241e-12!GO:0048522;positive regulation of cellular process;1.51208627165708e-12!GO:0051169;nuclear transport;1.53513237869259e-12!GO:0015934;large ribosomal subunit;1.79635685742763e-12!GO:0006916;anti-apoptosis;1.79635685742763e-12!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;2.08961023548535e-12!GO:0015935;small ribosomal subunit;2.15181111959673e-12!GO:0006955;immune response;2.40233256717242e-12!GO:0016604;nuclear body;3.00121140757686e-12!GO:0016874;ligase activity;4.3196413732081e-12!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);4.90164828141765e-12!GO:0008135;translation factor activity, nucleic acid binding;5.51096680094771e-12!GO:0051246;regulation of protein metabolic process;5.77524587845658e-12!GO:0012505;endomembrane system;6.76290364544874e-12!GO:0006793;phosphorus metabolic process;6.89042310750299e-12!GO:0006796;phosphate metabolic process;6.89042310750299e-12!GO:0048518;positive regulation of biological process;7.27835762026042e-12!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);8.55823612824558e-12!GO:0030163;protein catabolic process;1.09959771884478e-11!GO:0006996;organelle organization and biogenesis;1.16796821966753e-11!GO:0005768;endosome;1.31039730359197e-11!GO:0006457;protein folding;1.54531139675252e-11!GO:0016607;nuclear speck;2.63015783146587e-11!GO:0006366;transcription from RNA polymerase II promoter;2.63015783146587e-11!GO:0000502;proteasome complex (sensu Eukaryota);4.00124778974558e-11!GO:0005794;Golgi apparatus;4.39413495144962e-11!GO:0016787;hydrolase activity;5.23315989906694e-11!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;6.84308092796935e-11!GO:0048468;cell development;1.17867102516276e-10!GO:0003743;translation initiation factor activity;1.69893386344394e-10!GO:0009615;response to virus;2.29893614092042e-10!GO:0016310;phosphorylation;2.8943781643835e-10!GO:0051186;cofactor metabolic process;3.2913973505239e-10!GO:0006732;coenzyme metabolic process;3.47617596903731e-10!GO:0006413;translational initiation;3.66705393347137e-10!GO:0050790;regulation of catalytic activity;4.64221409987174e-10!GO:0005743;mitochondrial inner membrane;4.64221409987174e-10!GO:0006446;regulation of translational initiation;4.82394055547581e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;5.37821147247622e-10!GO:0005524;ATP binding;5.84689303531922e-10!GO:0032559;adenyl ribonucleotide binding;6.22536305524786e-10!GO:0044455;mitochondrial membrane part;6.78056319506727e-10!GO:0019829;cation-transporting ATPase activity;9.30079846575991e-10!GO:0009607;response to biotic stimulus;1.13075718303841e-09!GO:0006417;regulation of translation;1.4058020787189e-09!GO:0031324;negative regulation of cellular metabolic process;1.46980203992415e-09!GO:0030554;adenyl nucleotide binding;1.79777139295212e-09!GO:0051082;unfolded protein binding;1.80574210862583e-09!GO:0043065;positive regulation of apoptosis;2.65619814563866e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;3.14307867128036e-09!GO:0043068;positive regulation of programmed cell death;3.74865482016315e-09!GO:0015986;ATP synthesis coupled proton transport;4.15626223055933e-09!GO:0015985;energy coupled proton transport, down electrochemical gradient;4.15626223055933e-09!GO:0009889;regulation of biosynthetic process;5.07815227284006e-09!GO:0005783;endoplasmic reticulum;5.48335249252016e-09!GO:0009056;catabolic process;5.54439451911631e-09!GO:0009152;purine ribonucleotide biosynthetic process;5.66515388244697e-09!GO:0009150;purine ribonucleotide metabolic process;6.3388711389662e-09!GO:0016887;ATPase activity;6.50679373866013e-09!GO:0009967;positive regulation of signal transduction;6.54933870169221e-09!GO:0005730;nucleolus;6.62029822252517e-09!GO:0006163;purine nucleotide metabolic process;6.97260507725135e-09!GO:0006164;purine nucleotide biosynthetic process;6.98395248770826e-09!GO:0042623;ATPase activity, coupled;7.32122597501754e-09!GO:0051726;regulation of cell cycle;8.74978037520601e-09!GO:0050794;regulation of cellular process;9.40685765695823e-09!GO:0009259;ribonucleotide metabolic process;9.82179026015278e-09!GO:0008639;small protein conjugating enzyme activity;1.19054457661455e-08!GO:0017038;protein import;1.2326025712661e-08!GO:0000074;regulation of progression through cell cycle;1.24491914063496e-08!GO:0009260;ribonucleotide biosynthetic process;1.45231533802243e-08!GO:0016564;transcription repressor activity;1.55063197542997e-08!GO:0004842;ubiquitin-protein ligase activity;1.69961175995674e-08!GO:0015078;hydrogen ion transmembrane transporter activity;2.56314069491682e-08!GO:0005635;nuclear envelope;2.76036819804991e-08!GO:0007049;cell cycle;2.79625418745411e-08!GO:0031326;regulation of cellular biosynthetic process;2.96362260760768e-08!GO:0005770;late endosome;3.25186443345696e-08!GO:0006754;ATP biosynthetic process;3.29467172964842e-08!GO:0006753;nucleoside phosphate metabolic process;3.29467172964842e-08!GO:0006259;DNA metabolic process;3.39206596852304e-08!GO:0019787;small conjugating protein ligase activity;4.19439505873654e-08!GO:0051170;nuclear import;4.3374774492664e-08!GO:0000398;nuclear mRNA splicing, via spliceosome;4.65206253580102e-08!GO:0000375;RNA splicing, via transesterification reactions;4.65206253580102e-08!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;4.65206253580102e-08!GO:0005746;mitochondrial respiratory chain;4.73671787381364e-08!GO:0003924;GTPase activity;4.74598120799497e-08!GO:0009892;negative regulation of metabolic process;5.52924156654695e-08!GO:0005774;vacuolar membrane;6.4750119837309e-08!GO:0016469;proton-transporting two-sector ATPase complex;6.99589419504996e-08!GO:0003713;transcription coactivator activity;8.30329084128715e-08!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;1.00837833183133e-07!GO:0006606;protein import into nucleus;1.06135266698104e-07!GO:0045786;negative regulation of progression through cell cycle;1.07915140464216e-07!GO:0006917;induction of apoptosis;1.08328596472042e-07!GO:0046034;ATP metabolic process;1.62738181680742e-07!GO:0012502;induction of programmed cell death;1.71797478944262e-07!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;1.83108241108462e-07!GO:0015399;primary active transmembrane transporter activity;1.83108241108462e-07!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.90108293034489e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.90108293034489e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.90108293034489e-07!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.91195349531797e-07!GO:0009142;nucleoside triphosphate biosynthetic process;2.40098286470925e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.40098286470925e-07!GO:0044437;vacuolar part;2.46439856019503e-07!GO:0043228;non-membrane-bound organelle;2.61946453727724e-07!GO:0043232;intracellular non-membrane-bound organelle;2.61946453727724e-07!GO:0005525;GTP binding;2.61946453727724e-07!GO:0050136;NADH dehydrogenase (quinone) activity;2.95618427887934e-07!GO:0003954;NADH dehydrogenase activity;2.95618427887934e-07!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.95618427887934e-07!GO:0048193;Golgi vesicle transport;3.68436098959266e-07!GO:0015077;monovalent inorganic cation transmembrane transporter activity;3.68611892569976e-07!GO:0044432;endoplasmic reticulum part;4.02445065615522e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;4.25093058487741e-07!GO:0009144;purine nucleoside triphosphate metabolic process;4.25093058487741e-07!GO:0019899;enzyme binding;4.53934077482259e-07!GO:0008047;enzyme activator activity;4.6632408609338e-07!GO:0009199;ribonucleoside triphosphate metabolic process;5.0582013031446e-07!GO:0009108;coenzyme biosynthetic process;5.56172059567765e-07!GO:0007264;small GTPase mediated signal transduction;5.87178660159092e-07!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;6.96098773236573e-07!GO:0050789;regulation of biological process;7.54535502908317e-07!GO:0005765;lysosomal membrane;8.06168424698074e-07!GO:0009055;electron carrier activity;8.12896575521199e-07!GO:0008565;protein transporter activity;1.08881231072727e-06!GO:0009966;regulation of signal transduction;1.13063130337696e-06!GO:0009141;nucleoside triphosphate metabolic process;1.17176209459075e-06!GO:0006752;group transfer coenzyme metabolic process;1.17904752262414e-06!GO:0044453;nuclear membrane part;1.18130152021831e-06!GO:0016563;transcription activator activity;1.28317738269883e-06!GO:0016481;negative regulation of transcription;1.40459971547994e-06!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.66126720167304e-06!GO:0030099;myeloid cell differentiation;2.00480489860709e-06!GO:0031980;mitochondrial lumen;2.00933448489657e-06!GO:0005759;mitochondrial matrix;2.00933448489657e-06!GO:0006954;inflammatory response;2.04521202098709e-06!GO:0065007;biological regulation;2.20343831767623e-06!GO:0003714;transcription corepressor activity;2.31942866484891e-06!GO:0016881;acid-amino acid ligase activity;2.38041427899513e-06!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;2.43408587215531e-06!GO:0006461;protein complex assembly;2.45363529266006e-06!GO:0016070;RNA metabolic process;2.67372049665525e-06!GO:0005793;ER-Golgi intermediate compartment;2.84946310344309e-06!GO:0043492;ATPase activity, coupled to movement of substances;2.8839400474208e-06!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;2.90150717992936e-06!GO:0051188;cofactor biosynthetic process;3.44619586679316e-06!GO:0042175;nuclear envelope-endoplasmic reticulum network;3.47955340991135e-06!GO:0031965;nuclear membrane;3.67372936023473e-06!GO:0032561;guanyl ribonucleotide binding;4.27549649358575e-06!GO:0019001;guanyl nucleotide binding;4.27549649358575e-06!GO:0005789;endoplasmic reticulum membrane;4.38708061928082e-06!GO:0008632;apoptotic program;4.43686544280464e-06!GO:0042775;organelle ATP synthesis coupled electron transport;4.99840891766784e-06!GO:0042773;ATP synthesis coupled electron transport;4.99840891766784e-06!GO:0016044;membrane organization and biogenesis;4.99840891766784e-06!GO:0032446;protein modification by small protein conjugation;5.02141009540643e-06!GO:0031982;vesicle;5.04614417711065e-06!GO:0030097;hemopoiesis;5.08709211627711e-06!GO:0050657;nucleic acid transport;5.83596191804632e-06!GO:0051236;establishment of RNA localization;5.83596191804632e-06!GO:0050658;RNA transport;5.83596191804632e-06!GO:0008026;ATP-dependent helicase activity;6.39918794811428e-06!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;6.66402028701711e-06!GO:0016567;protein ubiquitination;6.7053361804576e-06!GO:0051789;response to protein stimulus;6.98001072671503e-06!GO:0006986;response to unfolded protein;6.98001072671503e-06!GO:0044440;endosomal part;7.46091344352501e-06!GO:0010008;endosome membrane;7.46091344352501e-06!GO:0006403;RNA localization;9.50321358117526e-06!GO:0030964;NADH dehydrogenase complex (quinone);9.72606658700748e-06!GO:0045271;respiratory chain complex I;9.72606658700748e-06!GO:0005747;mitochondrial respiratory chain complex I;9.72606658700748e-06!GO:0003676;nucleic acid binding;1.08172992688751e-05!GO:0006952;defense response;1.10676095647199e-05!GO:0022890;inorganic cation transmembrane transporter activity;1.60021741025934e-05!GO:0022402;cell cycle process;1.701364589826e-05!GO:0051336;regulation of hydrolase activity;1.78628519448609e-05!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.78777217902458e-05!GO:0005839;proteasome core complex (sensu Eukaryota);1.84896112832997e-05!GO:0016197;endosome transport;1.86392224476044e-05!GO:0004386;helicase activity;1.93236102458659e-05!GO:0001816;cytokine production;1.93236102458659e-05!GO:0051338;regulation of transferase activity;1.94643063593867e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;2.00410114847791e-05!GO:0030695;GTPase regulator activity;2.47831736186796e-05!GO:0009893;positive regulation of metabolic process;2.67475673674898e-05!GO:0005769;early endosome;3.18175887786369e-05!GO:0031410;cytoplasmic vesicle;3.23849792381275e-05!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;3.78904805963126e-05!GO:0043549;regulation of kinase activity;3.98238251493013e-05!GO:0045859;regulation of protein kinase activity;4.25428357701986e-05!GO:0045321;leukocyte activation;4.44726691325919e-05!GO:0046519;sphingoid metabolic process;4.44726691325919e-05!GO:0009117;nucleotide metabolic process;4.49085171290235e-05!GO:0006818;hydrogen transport;4.76427388057196e-05!GO:0004298;threonine endopeptidase activity;4.83291952924914e-05!GO:0003724;RNA helicase activity;5.48354911533753e-05!GO:0048475;coated membrane;5.48354911533753e-05!GO:0030117;membrane coat;5.48354911533753e-05!GO:0005643;nuclear pore;5.48354911533753e-05!GO:0031988;membrane-bound vesicle;6.53019816991509e-05!GO:0015992;proton transport;6.8226799738161e-05!GO:0002521;leukocyte differentiation;7.01639888401514e-05!GO:0006672;ceramide metabolic process;7.22362324639886e-05!GO:0009060;aerobic respiration;7.5070802983744e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;7.5070802983744e-05!GO:0043085;positive regulation of catalytic activity;7.58290148285874e-05!GO:0030120;vesicle coat;8.45733417850929e-05!GO:0030662;coated vesicle membrane;8.45733417850929e-05!GO:0051028;mRNA transport;9.03202725717018e-05!GO:0051168;nuclear export;9.33188236626501e-05!GO:0007050;cell cycle arrest;9.36550135208314e-05!GO:0051707;response to other organism;0.00010147872712701!GO:0006974;response to DNA damage stimulus;0.000106519146599222!GO:0006613;cotranslational protein targeting to membrane;0.00010748028950363!GO:0002520;immune system development;0.000109538611002636!GO:0006888;ER to Golgi vesicle-mediated transport;0.000111068715601133!GO:0046983;protein dimerization activity;0.000112388554733806!GO:0031252;leading edge;0.000118210221199524!GO:0048534;hemopoietic or lymphoid organ development;0.000118705878910517!GO:0031902;late endosome membrane;0.00012673912906239!GO:0004674;protein serine/threonine kinase activity;0.000132093870299736!GO:0006897;endocytosis;0.000135948393325336!GO:0010324;membrane invagination;0.000135948393325336!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00013954459737561!GO:0016568;chromatin modification;0.000150906013303956!GO:0045259;proton-transporting ATP synthase complex;0.000152383774697057!GO:0008234;cysteine-type peptidase activity;0.000159975083630379!GO:0006325;establishment and/or maintenance of chromatin architecture;0.000161301354502935!GO:0007034;vacuolar transport;0.000186848333543019!GO:0009165;nucleotide biosynthetic process;0.000187822772118823!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000189456804582408!GO:0046930;pore complex;0.00019787555289563!GO:0044262;cellular carbohydrate metabolic process;0.000215334749538511!GO:0046822;regulation of nucleocytoplasmic transport;0.000215334749538511!GO:0016023;cytoplasmic membrane-bound vesicle;0.000216729277413293!GO:0042254;ribosome biogenesis and assembly;0.000231756450403182!GO:0030532;small nuclear ribonucleoprotein complex;0.000247295925334565!GO:0006919;caspase activation;0.0002544323745457!GO:0005096;GTPase activator activity;0.00025888073857221!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000263413939145034!GO:0065002;intracellular protein transport across a membrane;0.00026601466949779!GO:0051223;regulation of protein transport;0.000280465085996634!GO:0005761;mitochondrial ribosome;0.000287159284561304!GO:0000313;organellar ribosome;0.000287159284561304!GO:0045941;positive regulation of transcription;0.0003084002850029!GO:0006323;DNA packaging;0.000315142447745766!GO:0006401;RNA catabolic process;0.00032714639198459!GO:0043281;regulation of caspase activity;0.00033790361425003!GO:0006402;mRNA catabolic process;0.000340365896336235!GO:0031325;positive regulation of cellular metabolic process;0.000360159916468716!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000371296330906846!GO:0005083;small GTPase regulator activity;0.000379474150273795!GO:0008186;RNA-dependent ATPase activity;0.0003871584942972!GO:0019221;cytokine and chemokine mediated signaling pathway;0.00038862381411015!GO:0007041;lysosomal transport;0.00039995017876636!GO:0045637;regulation of myeloid cell differentiation;0.000403912501663141!GO:0043280;positive regulation of caspase activity;0.000439017244896389!GO:0045333;cellular respiration;0.000439017244896389!GO:0009611;response to wounding;0.00045227915008731!GO:0005667;transcription factor complex;0.000498570825055359!GO:0005885;Arp2/3 protein complex;0.000533044594903629!GO:0016740;transferase activity;0.000541102621941378!GO:0007033;vacuole organization and biogenesis;0.000544826845838206!GO:0016281;eukaryotic translation initiation factor 4F complex;0.000557534885406504!GO:0000245;spliceosome assembly;0.000557534885406504!GO:0005057;receptor signaling protein activity;0.000620315354422984!GO:0045893;positive regulation of transcription, DNA-dependent;0.000682337193562509!GO:0006643;membrane lipid metabolic process;0.000725843623268176!GO:0007040;lysosome organization and biogenesis;0.000761657584963955!GO:0008654;phospholipid biosynthetic process;0.000772729962643242!GO:0000151;ubiquitin ligase complex;0.000816261335458381!GO:0006612;protein targeting to membrane;0.000821628815614674!GO:0030218;erythrocyte differentiation;0.000942087089876388!GO:0004197;cysteine-type endopeptidase activity;0.000981341099487!GO:0001775;cell activation;0.00101511188839153!GO:0006281;DNA repair;0.00103127422641694!GO:0002274;myeloid leukocyte activation;0.00104332474426743!GO:0003729;mRNA binding;0.00104442487285999!GO:0002757;immune response-activating signal transduction;0.00104442487285999!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.00104798471597762!GO:0004004;ATP-dependent RNA helicase activity;0.00108664899591781!GO:0007005;mitochondrion organization and biogenesis;0.00110049401202864!GO:0001817;regulation of cytokine production;0.00116537962054759!GO:0043566;structure-specific DNA binding;0.00116537962054759!GO:0044431;Golgi apparatus part;0.00118137345958749!GO:0022415;viral reproductive process;0.00119092420350477!GO:0046649;lymphocyte activation;0.00121413594170003!GO:0051427;hormone receptor binding;0.00121526878667335!GO:0033157;regulation of intracellular protein transport;0.00128890667118521!GO:0042306;regulation of protein import into nucleus;0.00128890667118521!GO:0007265;Ras protein signal transduction;0.00133104476137864!GO:0005798;Golgi-associated vesicle;0.00138533288397604!GO:0001726;ruffle;0.00139522952885059!GO:0030036;actin cytoskeleton organization and biogenesis;0.00147655397837343!GO:0005637;nuclear inner membrane;0.00152504074981487!GO:0060090;molecular adaptor activity;0.00156345618475373!GO:0051187;cofactor catabolic process;0.00162455620561104!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00169720498086494!GO:0016301;kinase activity;0.00174246920989124!GO:0006099;tricarboxylic acid cycle;0.00176399312470941!GO:0046356;acetyl-CoA catabolic process;0.00176399312470941!GO:0042110;T cell activation;0.00181513154861646!GO:0035257;nuclear hormone receptor binding;0.00185417054041703!GO:0009719;response to endogenous stimulus;0.00190056584213454!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.00190284500806487!GO:0065004;protein-DNA complex assembly;0.00204214218718136!GO:0002764;immune response-regulating signal transduction;0.00204568847272271!GO:0032940;secretion by cell;0.00211676748335471!GO:0042802;identical protein binding;0.00214020737807009!GO:0003697;single-stranded DNA binding;0.00218550839743615!GO:0045892;negative regulation of transcription, DNA-dependent;0.00235599951885513!GO:0006091;generation of precursor metabolites and energy;0.00249094643777401!GO:0002252;immune effector process;0.00249094643777401!GO:0031072;heat shock protein binding;0.00252470503043992!GO:0051090;regulation of transcription factor activity;0.00266789654062297!GO:0006084;acetyl-CoA metabolic process;0.00266789654062297!GO:0051345;positive regulation of hydrolase activity;0.00280774793928719!GO:0005741;mitochondrial outer membrane;0.00298258804567147!GO:0001819;positive regulation of cytokine production;0.0030123797377011!GO:0042221;response to chemical stimulus;0.00334207633799298!GO:0042990;regulation of transcription factor import into nucleus;0.0034578786259181!GO:0042991;transcription factor import into nucleus;0.0034578786259181!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.00353450316107364!GO:0016072;rRNA metabolic process;0.003690677758943!GO:0051023;regulation of immunoglobulin secretion;0.00382788026453185!GO:0045994;positive regulation of translational initiation by iron;0.00382788026453185!GO:0051276;chromosome organization and biogenesis;0.00394553918125907!GO:0002429;immune response-activating cell surface receptor signaling pathway;0.00421457939227347!GO:0030149;sphingolipid catabolic process;0.00460343038865747!GO:0031901;early endosome membrane;0.00463914704949717!GO:0016251;general RNA polymerase II transcription factor activity;0.00485262316254119!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00547538914864142!GO:0006364;rRNA processing;0.0056833601805747!GO:0009109;coenzyme catabolic process;0.00569220199676958!GO:0033116;ER-Golgi intermediate compartment membrane;0.00573303272461293!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00592688813367618!GO:0018193;peptidyl-amino acid modification;0.00593132898077199!GO:0045646;regulation of erythrocyte differentiation;0.00610106667290698!GO:0051059;NF-kappaB binding;0.00610768370697254!GO:0044255;cellular lipid metabolic process;0.00622993012791771!GO:0043433;negative regulation of transcription factor activity;0.00630787640846269!GO:0019377;glycolipid catabolic process;0.00631401795747658!GO:0031968;organelle outer membrane;0.00684840746630415!GO:0008383;manganese superoxide dismutase activity;0.00720542167441289!GO:0001315;age-dependent response to reactive oxygen species;0.00720542167441289!GO:0006468;protein amino acid phosphorylation;0.00722501061510974!GO:0006665;sphingolipid metabolic process;0.00734398380579018!GO:0006611;protein export from nucleus;0.00734398380579018!GO:0016363;nuclear matrix;0.00755995718640057!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00765269448971072!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00765269448971072!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00765269448971072!GO:0002768;immune response-regulating cell surface receptor signaling pathway;0.00776665383903282!GO:0007259;JAK-STAT cascade;0.00819751842607823!GO:0002573;myeloid leukocyte differentiation;0.00819751842607823!GO:0048487;beta-tubulin binding;0.00833605040913357!GO:0051098;regulation of binding;0.00834135441993909!GO:0030658;transport vesicle membrane;0.00834135441993909!GO:0030029;actin filament-based process;0.00843575308175984!GO:0045454;cell redox homeostasis;0.00871715088083362!GO:0002474;antigen processing and presentation of peptide antigen via MHC class I;0.00882363456628275!GO:0043087;regulation of GTPase activity;0.00886903906863078!GO:0032386;regulation of intracellular transport;0.00886903906863078!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.00890925185222352!GO:0004185;serine carboxypeptidase activity;0.00891814262313674!GO:0008283;cell proliferation;0.00901482225279203!GO:0016791;phosphoric monoester hydrolase activity;0.00911289993170705!GO:0007165;signal transduction;0.00927445258045354!GO:0002684;positive regulation of immune system process;0.00982751050179429!GO:0008637;apoptotic mitochondrial changes;0.00994086158253266!GO:0005048;signal sequence binding;0.0100816599559687!GO:0043021;ribonucleoprotein binding;0.0100816599559687!GO:0005152;interleukin-1 receptor antagonist activity;0.0100816599559687!GO:0030353;fibroblast growth factor receptor antagonist activity;0.0100816599559687!GO:0046479;glycosphingolipid catabolic process;0.0103062361790933!GO:0043623;cellular protein complex assembly;0.0104978245164141!GO:0033549;MAP kinase phosphatase activity;0.0111692522312626!GO:0017017;MAP kinase tyrosine/serine/threonine phosphatase activity;0.0111692522312626!GO:0002250;adaptive immune response;0.0111692522312626!GO:0002460;adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains;0.0111692522312626!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.0111692522312626!GO:0004812;aminoacyl-tRNA ligase activity;0.0111692522312626!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.0111692522312626!GO:0016491;oxidoreductase activity;0.0111717701770759!GO:0046467;membrane lipid biosynthetic process;0.0112269015678299!GO:0043621;protein self-association;0.0114551536482218!GO:0002697;regulation of immune effector process;0.0115250679449917!GO:0050778;positive regulation of immune response;0.0116369303669493!GO:0019318;hexose metabolic process;0.0117759401264506!GO:0006914;autophagy;0.0118492255988672!GO:0019220;regulation of phosphate metabolic process;0.0122143275569088!GO:0051174;regulation of phosphorus metabolic process;0.0122143275569088!GO:0019867;outer membrane;0.012311247225508!GO:0019222;regulation of metabolic process;0.0125245761940623!GO:0006352;transcription initiation;0.0125635033833502!GO:0005070;SH3/SH2 adaptor activity;0.012653660739988!GO:0008610;lipid biosynthetic process;0.0126594346631792!GO:0048500;signal recognition particle;0.0127375514857721!GO:0030098;lymphocyte differentiation;0.0127439164356354!GO:0006607;NLS-bearing substrate import into nucleus;0.0128646054456459!GO:0005996;monosaccharide metabolic process;0.0130073523435346!GO:0008286;insulin receptor signaling pathway;0.0132943907712821!GO:0000287;magnesium ion binding;0.0134657796774909!GO:0002682;regulation of immune system process;0.0135854851725267!GO:0030031;cell projection biogenesis;0.0136074563808174!GO:0005484;SNAP receptor activity;0.0136176488269878!GO:0005099;Ras GTPase activator activity;0.013670224073044!GO:0002822;regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains.;0.0137110329746986!GO:0002819;regulation of adaptive immune response;0.0137110329746986!GO:0051051;negative regulation of transport;0.0137803689523147!GO:0019904;protein domain specific binding;0.0137803689523147!GO:0000165;MAPKKK cascade;0.0137803689523147!GO:0046631;alpha-beta T cell activation;0.0137803689523147!GO:0033367;protein localization in mast cell secretory granule;0.0137803689523147!GO:0033365;protein localization in organelle;0.0137803689523147!GO:0033371;T cell secretory granule organization and biogenesis;0.0137803689523147!GO:0033373;maintenance of protease localization in mast cell secretory granule;0.0137803689523147!GO:0033375;protease localization in T cell secretory granule;0.0137803689523147!GO:0042629;mast cell granule;0.0137803689523147!GO:0033377;maintenance of protein localization in T cell secretory granule;0.0137803689523147!GO:0033364;mast cell secretory granule organization and biogenesis;0.0137803689523147!GO:0033380;granzyme B localization in T cell secretory granule;0.0137803689523147!GO:0033379;maintenance of protease localization in T cell secretory granule;0.0137803689523147!GO:0033370;maintenance of protein localization in mast cell secretory granule;0.0137803689523147!GO:0033368;protease localization in mast cell secretory granule;0.0137803689523147!GO:0033366;protein localization in secretory granule;0.0137803689523147!GO:0033382;maintenance of granzyme B localization in T cell secretory granule;0.0137803689523147!GO:0033374;protein localization in T cell secretory granule;0.0137803689523147!GO:0000209;protein polyubiquitination;0.013864045083214!GO:0006399;tRNA metabolic process;0.0139120172369031!GO:0030217;T cell differentiation;0.014502382383489!GO:0006333;chromatin assembly or disassembly;0.0146655951680406!GO:0006935;chemotaxis;0.0146655951680406!GO:0042330;taxis;0.0146655951680406!GO:0030127;COPII vesicle coat;0.0148818171472447!GO:0012507;ER to Golgi transport vesicle membrane;0.0148818171472447!GO:0032763;regulation of mast cell cytokine production;0.0148818171472447!GO:0032762;mast cell cytokine production;0.0148818171472447!GO:0005813;centrosome;0.0150239830214017!GO:0043038;amino acid activation;0.0151507039455689!GO:0006418;tRNA aminoacylation for protein translation;0.0151507039455689!GO:0043039;tRNA aminoacylation;0.0151507039455689!GO:0033673;negative regulation of kinase activity;0.01537483169171!GO:0006469;negative regulation of protein kinase activity;0.01537483169171!GO:0000139;Golgi membrane;0.0155043997732697!GO:0048146;positive regulation of fibroblast proliferation;0.0157776577571902!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0159090598850203!GO:0050851;antigen receptor-mediated signaling pathway;0.0159757655074701!GO:0030660;Golgi-associated vesicle membrane;0.0160199041826818!GO:0050727;regulation of inflammatory response;0.0160199041826818!GO:0031347;regulation of defense response;0.0160199041826818!GO:0031625;ubiquitin protein ligase binding;0.0160547386669525!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0160956444278823!GO:0008139;nuclear localization sequence binding;0.0164284070254311!GO:0030867;rough endoplasmic reticulum membrane;0.0165737550961131!GO:0008333;endosome to lysosome transport;0.0166127464546013!GO:0005975;carbohydrate metabolic process;0.0168398514201805!GO:0048144;fibroblast proliferation;0.0168398514201805!GO:0048145;regulation of fibroblast proliferation;0.0168398514201805!GO:0051347;positive regulation of transferase activity;0.0168434757576035!GO:0003727;single-stranded RNA binding;0.0169125599132774!GO:0002504;antigen processing and presentation of peptide or polysaccharide antigen via MHC class II;0.0170538223259785!GO:0051348;negative regulation of transferase activity;0.0172961396485752!GO:0006007;glucose catabolic process;0.0174120457057117!GO:0051252;regulation of RNA metabolic process;0.0175649965765281!GO:0016779;nucleotidyltransferase activity;0.0180998623654388!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.018401677980153!GO:0045047;protein targeting to ER;0.018401677980153!GO:0048872;homeostasis of number of cells;0.018461373226183!GO:0000785;chromatin;0.0189163866409908!GO:0002467;germinal center formation;0.0189807180570612!GO:0006749;glutathione metabolic process;0.0192352449365066!GO:0002444;myeloid leukocyte mediated immunity;0.0193269034527486!GO:0000339;RNA cap binding;0.0193269034527486!GO:0030503;regulation of cell redox homeostasis;0.0197010632473645!GO:0002440;production of molecular mediator of immune response;0.0200952397642483!GO:0005669;transcription factor TFIID complex;0.0204521492214952!GO:0019079;viral genome replication;0.0207308099922573!GO:0008624;induction of apoptosis by extracellular signals;0.0208204460861396!GO:0009891;positive regulation of biosynthetic process;0.0210524404134196!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0211302788767916!GO:0030176;integral to endoplasmic reticulum membrane;0.0217326391174201!GO:0002263;cell activation during immune response;0.0217326391174201!GO:0042093;T-helper cell differentiation;0.0217326391174201!GO:0002366;leukocyte activation during immune response;0.0217326391174201!GO:0002293;alpha-beta T cell differentiation during immune response;0.0217326391174201!GO:0002294;CD4-positive, alpha-beta T cell differentiation during immune response;0.0217326391174201!GO:0002285;lymphocyte activation during immune response;0.0217326391174201!GO:0002292;T cell differentiation during immune response;0.0217326391174201!GO:0002286;T cell activation during immune response;0.0217326391174201!GO:0045639;positive regulation of myeloid cell differentiation;0.021913926525349!GO:0043300;regulation of leukocyte degranulation;0.0219566220773255!GO:0030041;actin filament polymerization;0.0220906330052335!GO:0045746;negative regulation of Notch signaling pathway;0.0220955433533293!GO:0051092;activation of NF-kappaB transcription factor;0.0224731040316296!GO:0006891;intra-Golgi vesicle-mediated transport;0.0224731040316296!GO:0015923;mannosidase activity;0.0227651352251596!GO:0051247;positive regulation of protein metabolic process;0.0227651352251596!GO:0004177;aminopeptidase activity;0.0229346536332064!GO:0017091;AU-rich element binding;0.0232147922397472!GO:0050779;RNA destabilization;0.0232147922397472!GO:0000289;poly(A) tail shortening;0.0232147922397472!GO:0051049;regulation of transport;0.0233272074260179!GO:0002443;leukocyte mediated immunity;0.0234544610848544!GO:0016311;dephosphorylation;0.0234841259309472!GO:0042092;T-helper 2 type immune response;0.0236844353072817!GO:0000082;G1/S transition of mitotic cell cycle;0.0240625780373666!GO:0000278;mitotic cell cycle;0.0240625780373666!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0241481926613046!GO:0050776;regulation of immune response;0.0246394919519356!GO:0006414;translational elongation;0.0252220476430878!GO:0003725;double-stranded RNA binding;0.0253164636447029!GO:0000096;sulfur amino acid metabolic process;0.0253823880169336!GO:0019058;viral infectious cycle;0.0259858474655592!GO:0051881;regulation of mitochondrial membrane potential;0.0261666358849723!GO:0030118;clathrin coat;0.0265401968987471!GO:0046966;thyroid hormone receptor binding;0.0266933764647854!GO:0030693;caspase activity;0.0268866182697993!GO:0043488;regulation of mRNA stability;0.0270879830606755!GO:0043487;regulation of RNA stability;0.0270879830606755!GO:0002237;response to molecule of bacterial origin;0.0279396190113059!GO:0050900;leukocyte migration;0.0285038304592372!GO:0051329;interphase of mitotic cell cycle;0.0287341040073655!GO:0006644;phospholipid metabolic process;0.0288216866976516!GO:0019371;cyclooxygenase pathway;0.0288216866976516!GO:0030133;transport vesicle;0.0288991047794412!GO:0045089;positive regulation of innate immune response;0.0288991047794412!GO:0045088;regulation of innate immune response;0.0288991047794412!GO:0002763;positive regulation of myeloid leukocyte differentiation;0.0289586878947927!GO:0006066;alcohol metabolic process;0.0289586878947927!GO:0043022;ribosome binding;0.029291970201565!GO:0001562;response to protozoan;0.0294893389243345!GO:0042992;negative regulation of transcription factor import into nucleus;0.0304387528935891!GO:0042308;negative regulation of protein import into nucleus;0.0304387528935891!GO:0033674;positive regulation of kinase activity;0.0305902427735379!GO:0030377;U-plasminogen activator receptor activity;0.0308479752692598!GO:0019883;antigen processing and presentation of endogenous antigen;0.0309461104319586!GO:0046466;membrane lipid catabolic process;0.0310676953561697!GO:0051235;maintenance of localization;0.0311457941501529!GO:0030258;lipid modification;0.0316070610295898!GO:0045576;mast cell activation;0.0316158508585587!GO:0019752;carboxylic acid metabolic process;0.0320431703115129!GO:0042108;positive regulation of cytokine biosynthetic process;0.0322132189378397!GO:0051052;regulation of DNA metabolic process;0.0324551544974389!GO:0006405;RNA export from nucleus;0.0325658966981728!GO:0008287;protein serine/threonine phosphatase complex;0.0331347500741302!GO:0035035;histone acetyltransferase binding;0.0331347500741302!GO:0050811;GABA receptor binding;0.0331691891970111!GO:0009127;purine nucleoside monophosphate biosynthetic process;0.0331977962048537!GO:0009167;purine ribonucleoside monophosphate metabolic process;0.0331977962048537!GO:0009126;purine nucleoside monophosphate metabolic process;0.0331977962048537!GO:0009168;purine ribonucleoside monophosphate biosynthetic process;0.0331977962048537!GO:0006595;polyamine metabolic process;0.0332000687792261!GO:0002824;positive regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains;0.0333541848008128!GO:0002821;positive regulation of adaptive immune response;0.0333541848008128!GO:0006458;'de novo' protein folding;0.0333541848008128!GO:0051084;'de novo' posttranslational protein folding;0.0333541848008128!GO:0051101;regulation of DNA binding;0.0340051942275353!GO:0007006;mitochondrial membrane organization and biogenesis;0.0340051942275353!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0340051942275353!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0340051942275353!GO:0009890;negative regulation of biosynthetic process;0.0341349990536315!GO:0045944;positive regulation of transcription from RNA polymerase II promoter;0.034221054748106!GO:0005350;pyrimidine transmembrane transporter activity;0.0345744023893199!GO:0015855;pyrimidine transport;0.0345744023893199!GO:0015288;porin activity;0.0345744023893199!GO:0005815;microtubule organizing center;0.0346225487061341!GO:0002224;toll-like receptor signaling pathway;0.0348971181804117!GO:0002221;pattern recognition receptor signaling pathway;0.0348971181804117!GO:0042107;cytokine metabolic process;0.035251951078014!GO:0030521;androgen receptor signaling pathway;0.0352745401078041!GO:0006689;ganglioside catabolic process;0.0353202884126581!GO:0042832;defense response to protozoan;0.0354924090562317!GO:0008312;7S RNA binding;0.0358556116888389!GO:0017166;vinculin binding;0.0359090832408177!GO:0031327;negative regulation of cellular biosynthetic process;0.0360423238510105!GO:0045792;negative regulation of cell size;0.0363279508704017!GO:0043407;negative regulation of MAP kinase activity;0.0366919168459752!GO:0015631;tubulin binding;0.0370453862171445!GO:0042127;regulation of cell proliferation;0.0371289857063037!GO:0030027;lamellipodium;0.037145355885225!GO:0045045;secretory pathway;0.0372613732870464!GO:0006650;glycerophospholipid metabolic process;0.037386314283927!GO:0046632;alpha-beta T cell differentiation;0.0376385278468621!GO:0006740;NADPH regeneration;0.0377305822424273!GO:0006098;pentose-phosphate shunt;0.0377305822424273!GO:0002718;regulation of cytokine production during immune response;0.0381450755817728!GO:0002367;cytokine production during immune response;0.0381450755817728!GO:0002700;regulation of production of molecular mediator of immune response;0.0381450755817728!GO:0001776;leukocyte homeostasis;0.0381579543364133!GO:0004428;inositol or phosphatidylinositol kinase activity;0.0384821725796739!GO:0015036;disulfide oxidoreductase activity;0.0384821725796739!GO:0048471;perinuclear region of cytoplasm;0.0384821725796739!GO:0006376;mRNA splice site selection;0.0386018315748743!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0386018315748743!GO:0046426;negative regulation of JAK-STAT cascade;0.0386018315748743!GO:0019843;rRNA binding;0.0387268294896317!GO:0030134;ER to Golgi transport vesicle;0.0390005245525468!GO:0042325;regulation of phosphorylation;0.0390005245525468!GO:0031647;regulation of protein stability;0.0391446946924652!GO:0002699;positive regulation of immune effector process;0.0392527307635079!GO:0051091;positive regulation of transcription factor activity;0.0394239208652081!GO:0046823;negative regulation of nucleocytoplasmic transport;0.0397244806886135!GO:0043299;leukocyte degranulation;0.0397244806886135!GO:0032760;positive regulation of tumor necrosis factor production;0.0398637858309438!GO:0008017;microtubule binding;0.0399906825977996!GO:0045860;positive regulation of protein kinase activity;0.0400264775525275!GO:0030155;regulation of cell adhesion;0.0404328956135281!GO:0045936;negative regulation of phosphate metabolic process;0.0409001358005693!GO:0004722;protein serine/threonine phosphatase activity;0.0409294106746941!GO:0008361;regulation of cell size;0.0409899967807995!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0426685881238911!GO:0030308;negative regulation of cell growth;0.0431574130717541!GO:0051087;chaperone binding;0.0431574130717541!GO:0003746;translation elongation factor activity;0.0437762234612385!GO:0051240;positive regulation of multicellular organismal process;0.0443715972447154!GO:0009306;protein secretion;0.0452533333568898!GO:0045727;positive regulation of translation;0.045682268004553!GO:0000118;histone deacetylase complex;0.0457260141647052!GO:0043681;protein import into mitochondrion;0.047952017417823!GO:0043071;positive regulation of non-apoptotic programmed cell death;0.0480011417481043!GO:0005100;Rho GTPase activator activity;0.0480011417481043!GO:0009299;mRNA transcription;0.0480911893859493!GO:0051050;positive regulation of transport;0.0482512061667606!GO:0042347;negative regulation of NF-kappaB import into nucleus;0.0488150939837501!GO:0051224;negative regulation of protein transport;0.049389394346594!GO:0006082;organic acid metabolic process;0.049389394346594!GO:0001666;response to hypoxia;0.0499965900455038 | |||
|sample_id=11888 | |sample_id=11888 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 100: | ||
|sample_tissue= | |sample_tissue= | ||
|top_motifs=FOSL2:6.31595718448;FOS_FOS{B,L1}_JUN{B,D}:6.10896247772;BACH2:6.02318977113;NFE2:5.84492777892;HLF:5.5643963794;PAX2:5.07098160214;CEBPA,B_DDIT3:5.0639503644;NFE2L2:4.99194024856;NFIL3:4.82082326154;SREBF1,2:4.47961455422;NFKB1_REL_RELA:4.34629019534;ATF5_CREB3:3.98839479668;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:3.98000834337;HSF1,2:3.87304105524;FOXP3:3.60261272661;SPIB:3.50383265647;PAX8:3.20271837191;SPI1:3.17643291111;ATF4:3.1599927733;NFATC1..3:3.14325204867;CREB1:3.11632015755;NFE2L1:3.06388707367;ETS1,2:3.05167478079;ATF6:3.01120285195;JUN:2.91891158184;MAFB:2.81003731835;NANOG{mouse}:2.78669578736;NR1H4:2.66574664576;ATF2:2.53980494107;DMAP1_NCOR{1,2}_SMARC:2.50306136546;PAX3,7:2.43808647378;FOXN1:2.37144471687;RUNX1..3:2.35248848376;IRF1,2:2.18195416738;HOX{A5,B5}:2.17282933242;IRF7:2.12514745127;XBP1:2.06668022439;CDX1,2,4:1.796101295;TGIF1:1.69800023826;HIF1A:1.6396329802;STAT5{A,B}:1.61006715004;STAT2,4,6:1.54539589358;PAX1,9:1.54213076186;PDX1:1.41465549216;IKZF1:1.34330332964;RXRA_VDR{dimer}:1.29604164629;FOXO1,3,4:1.1169269881;VSX1,2:1.089433602;EP300:1.02301435098;HMX1:0.933996693609;POU2F1..3:0.898099272995;PPARG:0.837997297582;ELF1,2,4:0.828232816326;HMGA1,2:0.81527397801;HOXA9_MEIS1:0.773972388201;TBP:0.692620161331;PAX4:0.669854193181;ALX4:0.608221608174;MEF2{A,B,C,D}:0.597965838242;SRF:0.569918588573;RORA:0.506254751614;NANOG:0.29943536579;PRDM1:0.277994709703;HES1:0.208914161045;EN1,2:0.154247923052;NR3C1:0.101694497863;GLI1..3:0.0906466169782;BPTF:0.0709950050323;RBPJ:0.0163415312018;TEF:-0.0436111625207;RFX2..5_RFXANK_RFXAP:-0.163770047795;OCT4_SOX2{dimer}:-0.188709957078;FOX{D1,D2}:-0.316897919375;ESR1:-0.361255954047;AHR_ARNT_ARNT2:-0.414220969339;ZBTB16:-0.419946215024;EGR1..3:-0.484531234028;FOXM1:-0.504926992457;NFIX:-0.530403951414;POU3F1..4:-0.535876691423;IKZF2:-0.544553769995;FOXL1:-0.580820189484;HBP1_HMGB_SSRP1_UBTF:-0.624380149841;NKX2-1,4:-0.637642202332;ESRRA:-0.658740239566;GATA4:-0.746084893097;SOX2:-0.787801129862;MZF1:-0.796166130061;MYB:-0.804572650117;POU5F1:-0.814618370555;PAX6:-0.825742162684;SMAD1..7,9:-0.844783999934;TFCP2:-0.845186757446;NR6A1:-0.851108901934;STAT1,3:-1.00031255234;NKX3-1:-1.01910645381;CRX:-1.02723623146;ZNF238:-1.03965888295;DBP:-1.04005758047;TLX2:-1.05402893403;SOX5:-1.07309492321;RFX1:-1.1012467592;NHLH1,2:-1.1234644177;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.18995985531;REST:-1.19048405946;TAL1_TCF{3,4,12}:-1.31439260062;POU6F1:-1.33294000779;RXR{A,B,G}:-1.38733621518;PRRX1,2:-1.4003697457;SOX{8,9,10}:-1.41169437802;HNF1A:-1.43195015195;HNF4A_NR2F1,2:-1.4470847299;GATA6:-1.4913451286;BREu{core}:-1.49431336469;FOXP1:-1.49563931291;PITX1..3:-1.52029916712;CDC5L:-1.5555062232;CUX2:-1.5577396842;SPZ1:-1.56888210792;SP1:-1.57184505631;HOX{A4,D4}:-1.62183887162;T:-1.63485126939;ALX1:-1.66863269872;FOX{F1,F2,J1}:-1.67256441686;MYFfamily:-1.68341872493;TFAP4:-1.7077858474;TBX4,5:-1.71013924034;MED-1{core}:-1.72082495324;NKX2-3_NKX2-5:-1.72799293284;E2F1..5:-1.75444122886;MTE{core}:-1.76441518827;ZNF384:-1.77305286554;GZF1:-1.7979842874;GTF2A1,2:-1.84007626909;TP53:-1.84482593004;MYBL2:-1.9070436449;TLX1..3_NFIC{dimer}:-1.92503743008;FOXA2:-1.93476420575;MTF1:-1.96033025348;TEAD1:-1.97753740219;bHLH_family:-1.98571080488;FOXD3:-1.99234581375;ZIC1..3:-2.00122834845;NKX6-1,2:-2.00890262657;GTF2I:-2.0187403621;FOXQ1:-2.02033810836;TFAP2B:-2.0333946368;ZFP161:-2.05205262621;PATZ1:-2.05408228003;ZNF148:-2.06402090333;NFY{A,B,C}:-2.08108235831;EBF1:-2.09461771479;ZEB1:-2.13197377306;MAZ:-2.14305893755;ZBTB6:-2.19730646595;NKX3-2:-2.2175456269;TFDP1:-2.23696472772;PBX1:-2.27126579018;GCM1,2:-2.27314068073;SNAI1..3:-2.32333178827;ONECUT1,2:-2.38319454965;GFI1B:-2.4315709113;MYOD1:-2.48727324344;ELK1,4_GABP{A,B1}:-2.52888152204;RREB1:-2.5844436487;ADNP_IRX_SIX_ZHX:-2.59043954251;NR5A1,2:-2.60622630074;HIC1:-2.66146620184;HOX{A6,A7,B6,B7}:-2.6949754992;SOX17:-2.69682742951;TFAP2{A,C}:-2.74669302204;FOX{I1,J2}:-2.81683525814;XCPE1{core}:-2.82033421734;KLF4:-2.88974239216;POU1F1:-2.91413130715;UFEwm:-2.91463384516;AR:-2.99687018771;ARID5B:-3.07264647983;GFI1:-3.12208725994;EVI1:-3.22038110747;LHX3,4:-3.36534494169;LMO2:-3.37149077251;NRF1:-3.40509264099;PAX5:-3.43869022604;AIRE:-3.51334900148;NKX2-2,8:-3.65237039104;ZNF423:-3.71325992846;YY1:-3.77665050414;LEF1_TCF7_TCF7L1,2:-3.80208064774;ZNF143:-4.21016600477;HAND1,2:-4.3148032899;TOPORS:-4.87485565461 | |top_motifs=FOSL2:6.31595718448;FOS_FOS{B,L1}_JUN{B,D}:6.10896247772;BACH2:6.02318977113;NFE2:5.84492777892;HLF:5.5643963794;PAX2:5.07098160214;CEBPA,B_DDIT3:5.0639503644;NFE2L2:4.99194024856;NFIL3:4.82082326154;SREBF1,2:4.47961455422;NFKB1_REL_RELA:4.34629019534;ATF5_CREB3:3.98839479668;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:3.98000834337;HSF1,2:3.87304105524;FOXP3:3.60261272661;SPIB:3.50383265647;PAX8:3.20271837191;SPI1:3.17643291111;ATF4:3.1599927733;NFATC1..3:3.14325204867;CREB1:3.11632015755;NFE2L1:3.06388707367;ETS1,2:3.05167478079;ATF6:3.01120285195;JUN:2.91891158184;MAFB:2.81003731835;NANOG{mouse}:2.78669578736;NR1H4:2.66574664576;ATF2:2.53980494107;DMAP1_NCOR{1,2}_SMARC:2.50306136546;PAX3,7:2.43808647378;FOXN1:2.37144471687;RUNX1..3:2.35248848376;IRF1,2:2.18195416738;HOX{A5,B5}:2.17282933242;IRF7:2.12514745127;XBP1:2.06668022439;CDX1,2,4:1.796101295;TGIF1:1.69800023826;HIF1A:1.6396329802;STAT5{A,B}:1.61006715004;STAT2,4,6:1.54539589358;PAX1,9:1.54213076186;PDX1:1.41465549216;IKZF1:1.34330332964;RXRA_VDR{dimer}:1.29604164629;FOXO1,3,4:1.1169269881;VSX1,2:1.089433602;EP300:1.02301435098;HMX1:0.933996693609;POU2F1..3:0.898099272995;PPARG:0.837997297582;ELF1,2,4:0.828232816326;HMGA1,2:0.81527397801;HOXA9_MEIS1:0.773972388201;TBP:0.692620161331;PAX4:0.669854193181;ALX4:0.608221608174;MEF2{A,B,C,D}:0.597965838242;SRF:0.569918588573;RORA:0.506254751614;NANOG:0.29943536579;PRDM1:0.277994709703;HES1:0.208914161045;EN1,2:0.154247923052;NR3C1:0.101694497863;GLI1..3:0.0906466169782;BPTF:0.0709950050323;RBPJ:0.0163415312018;TEF:-0.0436111625207;RFX2..5_RFXANK_RFXAP:-0.163770047795;OCT4_SOX2{dimer}:-0.188709957078;FOX{D1,D2}:-0.316897919375;ESR1:-0.361255954047;AHR_ARNT_ARNT2:-0.414220969339;ZBTB16:-0.419946215024;EGR1..3:-0.484531234028;FOXM1:-0.504926992457;NFIX:-0.530403951414;POU3F1..4:-0.535876691423;IKZF2:-0.544553769995;FOXL1:-0.580820189484;HBP1_HMGB_SSRP1_UBTF:-0.624380149841;NKX2-1,4:-0.637642202332;ESRRA:-0.658740239566;GATA4:-0.746084893097;SOX2:-0.787801129862;MZF1:-0.796166130061;MYB:-0.804572650117;POU5F1:-0.814618370555;PAX6:-0.825742162684;SMAD1..7,9:-0.844783999934;TFCP2:-0.845186757446;NR6A1:-0.851108901934;STAT1,3:-1.00031255234;NKX3-1:-1.01910645381;CRX:-1.02723623146;ZNF238:-1.03965888295;DBP:-1.04005758047;TLX2:-1.05402893403;SOX5:-1.07309492321;RFX1:-1.1012467592;NHLH1,2:-1.1234644177;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.18995985531;REST:-1.19048405946;TAL1_TCF{3,4,12}:-1.31439260062;POU6F1:-1.33294000779;RXR{A,B,G}:-1.38733621518;PRRX1,2:-1.4003697457;SOX{8,9,10}:-1.41169437802;HNF1A:-1.43195015195;HNF4A_NR2F1,2:-1.4470847299;GATA6:-1.4913451286;BREu{core}:-1.49431336469;FOXP1:-1.49563931291;PITX1..3:-1.52029916712;CDC5L:-1.5555062232;CUX2:-1.5577396842;SPZ1:-1.56888210792;SP1:-1.57184505631;HOX{A4,D4}:-1.62183887162;T:-1.63485126939;ALX1:-1.66863269872;FOX{F1,F2,J1}:-1.67256441686;MYFfamily:-1.68341872493;TFAP4:-1.7077858474;TBX4,5:-1.71013924034;MED-1{core}:-1.72082495324;NKX2-3_NKX2-5:-1.72799293284;E2F1..5:-1.75444122886;MTE{core}:-1.76441518827;ZNF384:-1.77305286554;GZF1:-1.7979842874;GTF2A1,2:-1.84007626909;TP53:-1.84482593004;MYBL2:-1.9070436449;TLX1..3_NFIC{dimer}:-1.92503743008;FOXA2:-1.93476420575;MTF1:-1.96033025348;TEAD1:-1.97753740219;bHLH_family:-1.98571080488;FOXD3:-1.99234581375;ZIC1..3:-2.00122834845;NKX6-1,2:-2.00890262657;GTF2I:-2.0187403621;FOXQ1:-2.02033810836;TFAP2B:-2.0333946368;ZFP161:-2.05205262621;PATZ1:-2.05408228003;ZNF148:-2.06402090333;NFY{A,B,C}:-2.08108235831;EBF1:-2.09461771479;ZEB1:-2.13197377306;MAZ:-2.14305893755;ZBTB6:-2.19730646595;NKX3-2:-2.2175456269;TFDP1:-2.23696472772;PBX1:-2.27126579018;GCM1,2:-2.27314068073;SNAI1..3:-2.32333178827;ONECUT1,2:-2.38319454965;GFI1B:-2.4315709113;MYOD1:-2.48727324344;ELK1,4_GABP{A,B1}:-2.52888152204;RREB1:-2.5844436487;ADNP_IRX_SIX_ZHX:-2.59043954251;NR5A1,2:-2.60622630074;HIC1:-2.66146620184;HOX{A6,A7,B6,B7}:-2.6949754992;SOX17:-2.69682742951;TFAP2{A,C}:-2.74669302204;FOX{I1,J2}:-2.81683525814;XCPE1{core}:-2.82033421734;KLF4:-2.88974239216;POU1F1:-2.91413130715;UFEwm:-2.91463384516;AR:-2.99687018771;ARID5B:-3.07264647983;GFI1:-3.12208725994;EVI1:-3.22038110747;LHX3,4:-3.36534494169;LMO2:-3.37149077251;NRF1:-3.40509264099;PAX5:-3.43869022604;AIRE:-3.51334900148;NKX2-2,8:-3.65237039104;ZNF423:-3.71325992846;YY1:-3.77665050414;LEF1_TCF7_TCF7L1,2:-3.80208064774;ZNF143:-4.21016600477;HAND1,2:-4.3148032899;TOPORS:-4.87485565461 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11888-125D7;search_select_hide=table117:FF:11888-125D7 | |||
}} | }} | ||
Latest revision as of 18:26, 4 June 2020
| Name: | CD14+ monocytes - treated with Candida, donor3 |
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| Species: | Human (Homo sapiens) |
| Library ID: | CNhs13494 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13494
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13494
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.117 |
| 10 | 10 | 0.0241 |
| 100 | 100 | 0.915 |
| 101 | 101 | 0.773 |
| 102 | 102 | 0.971 |
| 103 | 103 | 0.29 |
| 104 | 104 | 0.484 |
| 105 | 105 | 0.0736 |
| 106 | 106 | 0.00117 |
| 107 | 107 | 0.28 |
| 108 | 108 | 0.804 |
| 109 | 109 | 0.37 |
| 11 | 11 | 0.214 |
| 110 | 110 | 0.16 |
| 111 | 111 | 0.106 |
| 112 | 112 | 0.38 |
| 113 | 113 | 0.543 |
| 114 | 114 | 0.0417 |
| 115 | 115 | 0.256 |
| 116 | 116 | 0.959 |
| 117 | 117 | 0.0735 |
| 118 | 118 | 0.182 |
| 119 | 119 | 0.133 |
| 12 | 12 | 0.284 |
| 120 | 120 | 0.655 |
| 121 | 121 | 0.573 |
| 122 | 122 | 0.509 |
| 123 | 123 | 0.597 |
| 124 | 124 | 0.671 |
| 125 | 125 | 0.411 |
| 126 | 126 | 0.184 |
| 127 | 127 | 0.52 |
| 128 | 128 | 0.045 |
| 129 | 129 | 0.403 |
| 13 | 13 | 0.0779 |
| 130 | 130 | 0.334 |
| 131 | 131 | 0.951 |
| 132 | 132 | 0.0442 |
| 133 | 133 | 0.661 |
| 134 | 134 | 0.69 |
| 135 | 135 | 0.96 |
| 136 | 136 | 0.998 |
| 137 | 137 | 0.04 |
| 138 | 138 | 0.387 |
| 139 | 139 | 0.0581 |
| 14 | 14 | 0.557 |
| 140 | 140 | 0.309 |
| 141 | 141 | 0.328 |
| 142 | 142 | 0.0247 |
| 143 | 143 | 0.0243 |
| 144 | 144 | 0.74 |
| 145 | 145 | 0.399 |
| 146 | 146 | 0.876 |
| 147 | 147 | 0.87 |
| 148 | 148 | 0.0189 |
| 149 | 149 | 0.952 |
| 15 | 15 | 0.183 |
| 150 | 150 | 0.359 |
| 151 | 151 | 0.46 |
| 152 | 152 | 0.398 |
| 153 | 153 | 0.623 |
| 154 | 154 | 0.786 |
| 155 | 155 | 0.893 |
| 156 | 156 | 0.527 |
| 157 | 157 | 0.423 |
| 158 | 158 | 0.0191 |
| 159 | 159 | 0.191 |
| 16 | 16 | 0.323 |
| 160 | 160 | 0.353 |
| 161 | 161 | 0.488 |
| 162 | 162 | 0.313 |
| 163 | 163 | 0.123 |
| 164 | 164 | 0.137 |
| 165 | 165 | 0.401 |
| 166 | 166 | 0.676 |
| 167 | 167 | 0.197 |
| 168 | 168 | 0.271 |
| 169 | 169 | 0.0163 |
| 17 | 17 | 0.263 |
| 18 | 18 | 0.118 |
| 19 | 19 | 0.536 |
| 2 | 2 | 0.467 |
| 20 | 20 | 0.211 |
| 21 | 21 | 0.775 |
| 22 | 22 | 0.361 |
| 23 | 23 | 0.0433 |
| 24 | 24 | 0.435 |
| 25 | 25 | 0.42 |
| 26 | 26 | 0.0969 |
| 27 | 27 | 0.511 |
| 28 | 28 | 0.42 |
| 29 | 29 | 0.277 |
| 3 | 3 | 0.18 |
| 30 | 30 | 0.545 |
| 31 | 31 | 0.765 |
| 32 | 32 | 0.533 |
| 33 | 33 | 0.222 |
| 34 | 34 | 0.807 |
| 35 | 35 | 0.109 |
| 36 | 36 | 0.0716 |
| 37 | 37 | 0.0654 |
| 38 | 38 | 0.346 |
| 39 | 39 | 0.82 |
| 4 | 4 | 0.826 |
| 40 | 40 | 0.16 |
| 41 | 41 | 0.00995 |
| 42 | 42 | 0.422 |
| 43 | 43 | 0.0219 |
| 44 | 44 | 0.556 |
| 45 | 45 | 0.807 |
| 46 | 46 | 0.232 |
| 47 | 47 | 0.705 |
| 48 | 48 | 0.599 |
| 49 | 49 | 0.12 |
| 5 | 5 | 0.31 |
| 50 | 50 | 0.968 |
| 51 | 51 | 0.555 |
| 52 | 52 | 0.48 |
| 53 | 53 | 0.665 |
| 54 | 54 | 0.468 |
| 55 | 55 | 0.742 |
| 56 | 56 | 0.704 |
| 57 | 57 | 0.925 |
| 58 | 58 | 0.183 |
| 59 | 59 | 0.245 |
| 6 | 6 | 0.869 |
| 60 | 60 | 0.0697 |
| 61 | 61 | 0.773 |
| 62 | 62 | 0.101 |
| 63 | 63 | 0.574 |
| 64 | 64 | 0.414 |
| 65 | 65 | 0.218 |
| 66 | 66 | 0.416 |
| 67 | 67 | 0.52 |
| 68 | 68 | 0.663 |
| 69 | 69 | 0.405 |
| 7 | 7 | 0.197 |
| 70 | 70 | 0.0888 |
| 71 | 71 | 0.0305 |
| 72 | 72 | 0.227 |
| 73 | 73 | 0.198 |
| 74 | 74 | 0.124 |
| 75 | 75 | 0.122 |
| 76 | 76 | 0.168 |
| 77 | 77 | 0.497 |
| 78 | 78 | 0.12 |
| 79 | 79 | 0.486 |
| 8 | 8 | 0.375 |
| 80 | 80 | 0.186 |
| 81 | 81 | 0.351 |
| 82 | 82 | 0.357 |
| 83 | 83 | 0.00334 |
| 84 | 84 | 0.134 |
| 85 | 85 | 0.0519 |
| 86 | 86 | 0.0558 |
| 87 | 87 | 0.535 |
| 88 | 88 | 0.81 |
| 89 | 89 | 0.274 |
| 9 | 9 | 0.455 |
| 90 | 90 | 0.136 |
| 91 | 91 | 0.306 |
| 92 | 92 | 0.414 |
| 93 | 93 | 0.429 |
| 94 | 94 | 0.101 |
| 95 | 95 | 0.466 |
| 96 | 96 | 0.385 |
| 97 | 97 | 0.52 |
| 98 | 98 | 0.14 |
| 99 | 99 | 0.0506 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs13494
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0011104 human CD14-positive monocytes - treated with Candida sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0000219 (motile cell)
0000325 (stuff accumulating cell)
0000473 (defensive cell)
0000234 (phagocyte)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0000255 (eukaryotic cell)
0000576 (monocyte)
0000860 (classical monocyte)
0002057 (CD14-positive, CD16-negative classical monocyte)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000625 (experimental infection sample)
0000350 (experimentally modified sample)
0000635 (Candida treatment sample)
0011104 (human CD14-positive monocytes - treated with Candida sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)
CL:0002057 (CD14-positive, CD16-negative classical monocyte)
