FF:10484-107A7: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005006 | ||
| | |accession_numbers=CAGE;DRX007908;DRR008780;DRZ000205;DRZ001590;DRZ011555;DRZ012940 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002107,UBERON:0002100,UBERON:0001007,UBERON:0004119,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009569,UBERON:0002368,UBERON:0005177,UBERON:0002365,UBERON:0005172,UBERON:0006925,UBERON:0002530,UBERON:0010317,UBERON:0005173,UBERON:0002417,UBERON:0000949,UBERON:0002330,UBERON:0000916,UBERON:0002423 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000181,CL:0000417,CL:0000668,CL:0000412,CL:0000255,CL:0000182 | |||
|ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:7,DOID:305 | |||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0101120,FF:0100224,FF:0100578 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score | |||
|fonse_cell_line=FF:0100224,FF:0101120 | |fonse_cell_line=FF:0100224,FF:0101120 | ||
|fonse_cell_line_closure=FF:0100224,FF:0101120 | |fonse_cell_line_closure=FF:0100224,FF:0101120 | ||
| Line 35: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/hepatoma%2520cell%2520line%253aLi-7.CNhs11271.10484-107A7.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/hepatoma%2520cell%2520line%253aLi-7.CNhs11271.10484-107A7.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/hepatoma%2520cell%2520line%253aLi-7.CNhs11271.10484-107A7.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/hepatoma%2520cell%2520line%253aLi-7.CNhs11271.10484-107A7.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/hepatoma%2520cell%2520line%253aLi-7.CNhs11271.10484-107A7.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10484-107A7 | |id=FF:10484-107A7 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000210;;FF:0100578 | ||
|is_obsolete= | |||
|library_id=CNhs11271 | |||
|library_id_phase_based=2:CNhs11271 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10484 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10484 | |||
|name=hepatoma cell line:Li-7 | |name=hepatoma cell line:Li-7 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11271,LSID758,release008,COMPLETED | |profile_hcage=CNhs11271,LSID758,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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|repeat_enrich_byname=0,0,0,0.0407713899614982,0.0461370418780058,0,0.0780415250326843,0,0,0.112364479407382,0,0,0,0,0,0,0.0050477018654437,0.0203856949807491,0.576543217054329,0.000657250592240283,0,0,0.155290301542978,0,0.0407713899614982,0,0,0,0,0,0,0,-0.0873484769910665,0,0.343410387285426,0.0558723797304563,0,0,0,-0.0186252810838506,0.105277966466108,0,-0.0254571510214562,-0.02757287111587,0,0,0,0,-0.159133710260126,0,-0.0801080938322425,-0.0419487783619191,0.329730374145533,-0.0825631300144325,-0.055712496781182,0,0,0,-0.630926997483034,-0.238796738415934,0,0,-0.101394156771125,0.167726053521384,0,0,-0.391044581551635,0,-0.174578946144075,-0.000323776706343593,0,0.0473156132043715,0,0,0,0,0,0,0,0.0780415250326843,0.112364479407382,0,0,-0.0574934668214365,0.145555717483585,0,0.338681507059363,0.718699418494107,0.0194430830094411,-0.161767118343394,0,0.0412673832341763,0.7376308440241,-0.157267497077478,0.0313358483949365,0.603150130129767,0,-0.302389727009913,0.0661400367385326,-0.0672799864235045,-0.084516436135667,-0.147401849371139,-0.189981719549847,0,-0.211599191241378,0.0651388489350712,-0.00212749415941671,0.046938489284837,0.00501733070495565,-0.137371266930858,-0.0449770452393115,0,0.297601820256107,0.0407713899614982,0.0740607061754263,0,0.107844211617395,-0.0175704003142193,0.0809443350751475,-0.00142641000155,0.00669326945976735,0.07792734419303,-0.31185889035802,0.985076471131282,-0.063613514021854,-0.0046755384805275,-0.195811531240693,0,0,-0.00393469990980466,-0.0252555110713879,-0.0924402482910452,-0.0411041182516696,0,0.0164517664186017,0.0440202183300142,0.143086648793222,-0.275718653500118,-0.0486707440822316,0.275506532068062,0,-0.00405517594440241,0,0,0,0,0,0.0525627830559066,-0.287265565879158,0.0426509705125173,0,-0.0447138608611877,-0.0590605391593472,0.0266479387352146,0,0.0308972900390815,0.0780415250326843,0.0205530435793133,-0.100871813716588,0,0.0648764723206475,-0.421155336880051,0.0211977941843062,-0.170168228240729,0.115361991367238,0.284494042575714,-0.207951423520743,-0.097274635249886,-0.288510636560644,0.11588954555871,-0.0881268324752877,0,-0.226164796315793,0.147146320357228,0,0.172046471323047,0.0780415250326843,-0.0582102767570074,0,-0.0118190983281616,0,-0.316776808677834,-0.54043375147324,0.033254939581868,-0.0732708136098243,0,-0.305427351803486,0.54176479643744,0,0,0,0.338681507059363,0.168260112605966,0.12894848546617,0.0092366788213205,0.144165140756064,0,-0.263448921760569,0,0,-0.020011687800572,0.0167505393866194,0,0.0691547538326668,0.16321958377063,-0.0650537149067243,-0.0379295484022497,0,0,-0.202954951744656,0,0,0.484653045205214,0.0511371228236372,0.0906686680514882,-0.212554951525258,0.0191421413687296,-0.108622809454255,0,0,0.322901462264407,0,0.0341134890081226,0,0,-0.142591192528543,-0.0385865879574485,0,0.126113288575504,0,0,0,0,0,0,0,0,0,0.10449305711339,0.417589167767579,0.0407713899614982,-0.0987082479438965,0,0.0407713899614982,0.0407713899614982,0,0.357850505621477,-0.0803609201850666,0,0,0.387180909624653,0.0156028974181705,-0.0106529362690379,0.0203856949807491,0.0203856949807491,0,0,0.160485661004603,-0.0908720826873414,0.0407713899614982,-0.0194982270902493,0.0780415250326843,0.0390207625163422,0,0,0.0580314033265008,0,0,0,0.0203856949807491,-0.057730457053664,-0.179540525289754,0,0.0407713899614982,0.0203856949807491,-0.27695440160179,0.0407713899614982,0,0,0,-0.0271972081150011,0,0.0407713899614982,0.0685913186811764,0,-0.261861917488107,0.237045316393764,0,-0.161216398019743,-0.300041707309506,0.518018312151042,0,0,0.181398254458182,0,0.0203856949807491,0.182894140849768,0.0299942564417161,0,0,0,0,0,0,0.144172393115712,0,0.862160279794213,0.00172852236456385,0,0,0,0,0.252226577151008,0,0,0,0.0203856949807491,0,-0.246132805257528,0.109327334734084,0,0,0,0.0407713899614982,0,0,0,-0.0241060230789031,0.0168820885769799,0,0,0.0407713899614982,0,0,0,0,0,0.263312833920465,0.23992713248108,0,0,0,0,-0.0969923612426051,0,0,0,0.0780415250326843,-0.564807121153884,0,0,-0.133189739077802,0,0,0,0,0,0,0,0.0203856949807491,0,0,0,0,0,0.0504897321436152,-0.35845893280395,0,0,0,0,0,0.144172393115712,0,-0.27483329820609,0,0,0,0,-0.0358428486762929,0,0,0,0.271412678768921,0,0.15830916585422,0,0,0,0,0,0.0164050720337955,0.100775695696297,0.0390207625163422,0,0,0,0,0,0,0,0,0,0,0,0,0,0.049007120194009,0,0.397440632274753,-0.0597078090168808,0,0,-0.0948750865990105,0,0,0,0,0,0,0.0248418156751641,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0407713899614982,0,0,0,0,0,0,0.104492281705104,0,0,0,0,0,0,0,-0.0571865063065593,0,0,0.112950340031218,0,0,0,0.000391789608681081,0,0,-0.109051587845971,0.152941537768412,-0.0096578735134728,0,0,0,0.0325188366070764,0,0,0,0,-0.0667773874189013,0,0,0,0,0,0,0,0,0.144172393115712,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0203856949807491,0,0,0,1.64357909129655,-0.0752814853157433,0,0,0,0,0,0,0,0,0,0,0,0,0.100775695696297,0,0,0,0,0,0,0,0,0.0203856949807491,0,0,0,0,0,0.0407713899614982,0.0390207625163422,0,0,0,0,0,0,0.0611916389446167,0.1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| |||
|rna_box=107 | |rna_box=107 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 78: | ||
|rna_weight_ug=36.4795 | |rna_weight_ug=36.4795 | ||
|sample_age=45 | |sample_age=45 | ||
|sample_category=cell lines | |||
|sample_cell_catalog=RCB1941 | |sample_cell_catalog=RCB1941 | ||
|sample_cell_line=Li-7 | |sample_cell_line=Li-7 | ||
| Line 69: | Line 91: | ||
|sample_ethnicity=unknown | |sample_ethnicity=unknown | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.80256457968107e-254!GO:0043231;intracellular membrane-bound organelle;1.97085684561143e-213!GO:0043227;membrane-bound organelle;2.58947460035789e-213!GO:0043226;organelle;3.57197425886753e-210!GO:0043229;intracellular organelle;8.37252680458192e-210!GO:0005737;cytoplasm;2.30022706862444e-183!GO:0044422;organelle part;1.20259338918849e-143!GO:0044446;intracellular organelle part;2.88569234040855e-142!GO:0044444;cytoplasmic part;1.71335185190756e-140!GO:0044237;cellular metabolic process;2.11996406525514e-103!GO:0044238;primary metabolic process;9.83176793311125e-102!GO:0032991;macromolecular complex;2.45435028114803e-100!GO:0030529;ribonucleoprotein complex;4.18069633487675e-91!GO:0043170;macromolecule metabolic process;5.89419565284772e-91!GO:0005634;nucleus;3.2452146513669e-85!GO:0044428;nuclear part;1.27319005324617e-79!GO:0043233;organelle lumen;9.12015178525838e-79!GO:0031974;membrane-enclosed lumen;9.12015178525838e-79!GO:0005739;mitochondrion;3.37213895730546e-76!GO:0003723;RNA binding;2.28691308872108e-73!GO:0005515;protein binding;1.77790988998268e-71!GO:0031090;organelle membrane;6.6580178451593e-55!GO:0006396;RNA processing;8.76880437483143e-55!GO:0005840;ribosome;1.56038147417711e-53!GO:0043283;biopolymer metabolic process;7.22357851045537e-51!GO:0010467;gene expression;1.51145739675119e-49!GO:0044429;mitochondrial part;2.34293555518218e-49!GO:0019538;protein metabolic process;9.49481511395132e-49!GO:0006412;translation;9.80419069481243e-49!GO:0043234;protein complex;1.96990094096119e-48!GO:0031981;nuclear lumen;4.23363194732161e-48!GO:0033036;macromolecule localization;1.23038352419992e-46!GO:0016043;cellular component organization and biogenesis;5.09986368774959e-46!GO:0015031;protein transport;9.01733700469727e-46!GO:0031967;organelle envelope;1.86250225851958e-44!GO:0031975;envelope;2.89459226162167e-44!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.45430873053108e-44!GO:0003735;structural constituent of ribosome;8.41191236020305e-44!GO:0044267;cellular protein metabolic process;1.88670851593925e-43!GO:0044260;cellular macromolecule metabolic process;4.79461429858391e-43!GO:0009058;biosynthetic process;1.03690256343655e-42!GO:0008104;protein localization;4.44620041178828e-42!GO:0045184;establishment of protein localization;5.72958273556244e-42!GO:0044249;cellular biosynthetic process;1.26550990720898e-41!GO:0005829;cytosol;1.31454158882707e-41!GO:0016071;mRNA metabolic process;4.36954105979999e-41!GO:0009059;macromolecule biosynthetic process;7.89267310118653e-39!GO:0008380;RNA splicing;1.20016146826802e-37!GO:0033279;ribosomal subunit;2.36136837594679e-37!GO:0046907;intracellular transport;7.80207073718752e-35!GO:0006397;mRNA processing;1.26158679748118e-34!GO:0022613;ribonucleoprotein complex biogenesis and assembly;3.64410319705529e-32!GO:0005740;mitochondrial envelope;1.15508430192084e-30!GO:0019866;organelle inner membrane;9.20391165558811e-30!GO:0003676;nucleic acid binding;1.21982880686578e-29!GO:0006996;organelle organization and biogenesis;1.47462485898295e-29!GO:0031966;mitochondrial membrane;4.3573035485724e-29!GO:0043228;non-membrane-bound organelle;9.17173204433817e-29!GO:0043232;intracellular non-membrane-bound organelle;9.17173204433817e-29!GO:0005654;nucleoplasm;1.78015053320748e-28!GO:0006886;intracellular protein transport;4.31673419088085e-28!GO:0065003;macromolecular complex assembly;7.70567037160977e-28!GO:0005743;mitochondrial inner membrane;8.56289144249374e-28!GO:0000166;nucleotide binding;1.55258213607369e-27!GO:0005681;spliceosome;4.41964896982764e-26!GO:0016070;RNA metabolic process;1.20104077915073e-25!GO:0006259;DNA metabolic process;1.70441346029895e-25!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.05090629639976e-24!GO:0022607;cellular component assembly;1.29127927999039e-24!GO:0044451;nucleoplasm part;7.33553341827685e-24!GO:0012505;endomembrane system;1.92891856738887e-23!GO:0016462;pyrophosphatase activity;4.72664592519796e-23!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;6.89106733376207e-23!GO:0051649;establishment of cellular localization;7.55028238587743e-23!GO:0051641;cellular localization;8.18807554082063e-23!GO:0016817;hydrolase activity, acting on acid anhydrides;9.98328616514087e-23!GO:0031980;mitochondrial lumen;1.41149585616846e-22!GO:0005759;mitochondrial matrix;1.41149585616846e-22!GO:0017111;nucleoside-triphosphatase activity;1.54900376862149e-22!GO:0044445;cytosolic part;2.55612835633027e-21!GO:0006457;protein folding;4.11976960207984e-21!GO:0005730;nucleolus;5.46627152791839e-21!GO:0016874;ligase activity;2.7382263549021e-20!GO:0006119;oxidative phosphorylation;2.81397582667735e-20!GO:0015935;small ribosomal subunit;1.73000430218707e-19!GO:0051603;proteolysis involved in cellular protein catabolic process;5.86690102386522e-19!GO:0032553;ribonucleotide binding;5.9223161830365e-19!GO:0032555;purine ribonucleotide binding;5.9223161830365e-19!GO:0017076;purine nucleotide binding;6.36640679386646e-19!GO:0044248;cellular catabolic process;6.36640679386646e-19!GO:0044455;mitochondrial membrane part;6.64228475032967e-19!GO:0015934;large ribosomal subunit;7.33850154736113e-19!GO:0006511;ubiquitin-dependent protein catabolic process;1.0522686339235e-18!GO:0005783;endoplasmic reticulum;1.06771225602917e-18!GO:0019941;modification-dependent protein catabolic process;1.14977991980353e-18!GO:0043632;modification-dependent macromolecule catabolic process;1.14977991980353e-18!GO:0044257;cellular protein catabolic process;1.6925023941809e-18!GO:0007049;cell cycle;1.92227811026941e-18!GO:0044265;cellular macromolecule catabolic process;2.37034641613841e-18!GO:0000502;proteasome complex (sensu Eukaryota);8.00001050333099e-18!GO:0008134;transcription factor binding;1.21101371151172e-17!GO:0006512;ubiquitin cycle;2.01516441418035e-17!GO:0022618;protein-RNA complex assembly;2.56999449941514e-17!GO:0043285;biopolymer catabolic process;6.01394254585918e-17!GO:0006974;response to DNA damage stimulus;7.17405169617088e-17!GO:0051186;cofactor metabolic process;1.61931391049282e-16!GO:0005761;mitochondrial ribosome;1.92200894250397e-16!GO:0000313;organellar ribosome;1.92200894250397e-16!GO:0044432;endoplasmic reticulum part;5.92504037738027e-16!GO:0051082;unfolded protein binding;6.13375458380784e-16!GO:0048770;pigment granule;8.39771678687114e-16!GO:0042470;melanosome;8.39771678687114e-16!GO:0008135;translation factor activity, nucleic acid binding;9.48770548063658e-16!GO:0005746;mitochondrial respiratory chain;1.09837446937735e-15!GO:0042254;ribosome biogenesis and assembly;2.44937105374871e-15!GO:0030163;protein catabolic process;6.98365615286179e-15!GO:0009057;macromolecule catabolic process;7.33537681436681e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;9.5335525814608e-15!GO:0005635;nuclear envelope;1.84188163105815e-14!GO:0009719;response to endogenous stimulus;1.89134794644852e-14!GO:0005524;ATP binding;4.14178693848214e-14!GO:0032559;adenyl ribonucleotide binding;4.53214098450449e-14!GO:0031965;nuclear membrane;4.60279687557517e-14!GO:0005794;Golgi apparatus;4.97257870464849e-14!GO:0016887;ATPase activity;5.27564972824325e-14!GO:0050136;NADH dehydrogenase (quinone) activity;5.45217362801634e-14!GO:0003954;NADH dehydrogenase activity;5.45217362801634e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;5.45217362801634e-14!GO:0030554;adenyl nucleotide binding;6.47000294640252e-14!GO:0000398;nuclear mRNA splicing, via spliceosome;8.86581057941279e-14!GO:0000375;RNA splicing, via transesterification reactions;8.86581057941279e-14!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;8.86581057941279e-14!GO:0044453;nuclear membrane part;3.90638809846614e-13!GO:0042623;ATPase activity, coupled;4.17102983780072e-13!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);5.81999455204676e-13!GO:0006366;transcription from RNA polymerase II promoter;6.1255632799027e-13!GO:0043412;biopolymer modification;6.29129366737075e-13!GO:0006281;DNA repair;6.31594364185267e-13!GO:0006732;coenzyme metabolic process;6.38931141053434e-13!GO:0006605;protein targeting;6.60220238975594e-13!GO:0048193;Golgi vesicle transport;6.89013926997729e-13!GO:0042175;nuclear envelope-endoplasmic reticulum network;9.58710696688042e-13!GO:0009055;electron carrier activity;1.43504316637389e-12!GO:0022402;cell cycle process;1.6917106056909e-12!GO:0012501;programmed cell death;1.75767138300577e-12!GO:0042775;organelle ATP synthesis coupled electron transport;1.88407308740778e-12!GO:0042773;ATP synthesis coupled electron transport;1.88407308740778e-12!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);2.12402066357075e-12!GO:0006915;apoptosis;2.88680636861183e-12!GO:0005789;endoplasmic reticulum membrane;3.12219513074689e-12!GO:0030964;NADH dehydrogenase complex (quinone);4.62286720326638e-12!GO:0045271;respiratory chain complex I;4.62286720326638e-12!GO:0005747;mitochondrial respiratory chain complex I;4.62286720326638e-12!GO:0006260;DNA replication;6.14934504475701e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.17733732509705e-11!GO:0009056;catabolic process;1.29363023959559e-11!GO:0008219;cell death;1.37266548172064e-11!GO:0016265;death;1.37266548172064e-11!GO:0006403;RNA localization;1.38628857735645e-11!GO:0050657;nucleic acid transport;1.79867548610399e-11!GO:0051236;establishment of RNA localization;1.79867548610399e-11!GO:0050658;RNA transport;1.79867548610399e-11!GO:0003743;translation initiation factor activity;1.8100216740619e-11!GO:0016192;vesicle-mediated transport;1.92021457894703e-11!GO:0016604;nuclear body;2.27668307024852e-11!GO:0000278;mitotic cell cycle;3.18193241568462e-11!GO:0003712;transcription cofactor activity;3.37161299874812e-11!GO:0006399;tRNA metabolic process;3.65090985095675e-11!GO:0006913;nucleocytoplasmic transport;3.88470964563924e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;3.90038238289982e-11!GO:0004386;helicase activity;4.82821770809367e-11!GO:0005643;nuclear pore;4.82821770809367e-11!GO:0006464;protein modification process;5.13793239574846e-11!GO:0065002;intracellular protein transport across a membrane;6.81103369244236e-11!GO:0050794;regulation of cellular process;7.15622178232199e-11!GO:0008565;protein transporter activity;8.00463863552419e-11!GO:0051169;nuclear transport;8.124595955805e-11!GO:0005793;ER-Golgi intermediate compartment;1.0054118104952e-10!GO:0005694;chromosome;1.05733065384734e-10!GO:0006413;translational initiation;1.60575311404223e-10!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.8744978552016e-10!GO:0006364;rRNA processing;2.46876429998118e-10!GO:0016072;rRNA metabolic process;4.09444724141182e-10!GO:0051276;chromosome organization and biogenesis;4.76670919201903e-10!GO:0006461;protein complex assembly;5.0558239545819e-10!GO:0008026;ATP-dependent helicase activity;5.62665698904688e-10!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;5.94044095884252e-10!GO:0006446;regulation of translational initiation;7.7768596019815e-10!GO:0046930;pore complex;8.62153912912117e-10!GO:0009060;aerobic respiration;1.10737245753745e-09!GO:0005768;endosome;1.13139505432334e-09!GO:0051028;mRNA transport;1.71268630385859e-09!GO:0008639;small protein conjugating enzyme activity;1.75355505803868e-09!GO:0043687;post-translational protein modification;1.77636263771271e-09!GO:0016607;nuclear speck;3.26695474000768e-09!GO:0004842;ubiquitin-protein ligase activity;3.45527293130591e-09!GO:0045333;cellular respiration;4.23283126742585e-09!GO:0000087;M phase of mitotic cell cycle;5.606928927877e-09!GO:0019787;small conjugating protein ligase activity;7.04654994097989e-09!GO:0044427;chromosomal part;7.04654994097989e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;8.08267401051155e-09!GO:0006325;establishment and/or maintenance of chromatin architecture;1.08266096545682e-08!GO:0007067;mitosis;1.17849749165926e-08!GO:0048523;negative regulation of cellular process;1.21141328119089e-08!GO:0051301;cell division;1.74378352874263e-08!GO:0016881;acid-amino acid ligase activity;1.84386916875321e-08!GO:0006323;DNA packaging;2.91112143645219e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;3.19814356619707e-08!GO:0004812;aminoacyl-tRNA ligase activity;3.19814356619707e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;3.19814356619707e-08!GO:0016568;chromatin modification;4.80006639204727e-08!GO:0030532;small nuclear ribonucleoprotein complex;4.85657586482514e-08!GO:0009259;ribonucleotide metabolic process;5.01585118534735e-08!GO:0043038;amino acid activation;5.29110135815149e-08!GO:0006418;tRNA aminoacylation for protein translation;5.29110135815149e-08!GO:0043039;tRNA aminoacylation;5.29110135815149e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;6.12776354242019e-08!GO:0022403;cell cycle phase;6.24424922583989e-08!GO:0051188;cofactor biosynthetic process;7.19989697054983e-08!GO:0006163;purine nucleotide metabolic process;7.89669613322076e-08!GO:0043067;regulation of programmed cell death;8.07962966297519e-08!GO:0042981;regulation of apoptosis;8.85670276589141e-08!GO:0006099;tricarboxylic acid cycle;1.23122396932486e-07!GO:0046356;acetyl-CoA catabolic process;1.23122396932486e-07!GO:0050789;regulation of biological process;1.23735071111048e-07!GO:0043566;structure-specific DNA binding;1.29099931695033e-07!GO:0016491;oxidoreductase activity;1.32714494008551e-07!GO:0005525;GTP binding;1.72491958930527e-07!GO:0051246;regulation of protein metabolic process;1.77906566839371e-07!GO:0017038;protein import;1.78456499908804e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.81266183442563e-07!GO:0051726;regulation of cell cycle;1.97082185273299e-07!GO:0051187;cofactor catabolic process;2.04369315905275e-07!GO:0019222;regulation of metabolic process;2.48637060800413e-07!GO:0000074;regulation of progression through cell cycle;2.49359533533867e-07!GO:0005839;proteasome core complex (sensu Eukaryota);2.59217485243546e-07!GO:0048519;negative regulation of biological process;2.91637321803137e-07!GO:0015986;ATP synthesis coupled proton transport;2.96994235162201e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.96994235162201e-07!GO:0005667;transcription factor complex;2.98247451169469e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;3.22208378074055e-07!GO:0006357;regulation of transcription from RNA polymerase II promoter;3.56876848557095e-07!GO:0009150;purine ribonucleotide metabolic process;3.7431456404008e-07!GO:0006164;purine nucleotide biosynthetic process;3.8573646952247e-07!GO:0044440;endosomal part;3.87927629529528e-07!GO:0010008;endosome membrane;3.87927629529528e-07!GO:0007005;mitochondrion organization and biogenesis;4.08328140889126e-07!GO:0006084;acetyl-CoA metabolic process;4.08909231020474e-07!GO:0016787;hydrolase activity;4.39929404775166e-07!GO:0000279;M phase;5.06168735974071e-07!GO:0009199;ribonucleoside triphosphate metabolic process;5.15663042658411e-07!GO:0003924;GTPase activity;5.18069716254609e-07!GO:0019829;cation-transporting ATPase activity;5.25298080201875e-07!GO:0032446;protein modification by small protein conjugation;5.64303371458242e-07!GO:0005770;late endosome;6.41719184530074e-07!GO:0016567;protein ubiquitination;6.7248916381256e-07!GO:0009260;ribonucleotide biosynthetic process;7.18237325743473e-07!GO:0031988;membrane-bound vesicle;8.04743270736873e-07!GO:0009141;nucleoside triphosphate metabolic process;8.08786850511305e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;8.34256412988893e-07!GO:0009144;purine nucleoside triphosphate metabolic process;8.34256412988893e-07!GO:0043069;negative regulation of programmed cell death;8.41060876435711e-07!GO:0016023;cytoplasmic membrane-bound vesicle;9.59044170837949e-07!GO:0016563;transcription activator activity;1.14831583654108e-06!GO:0009142;nucleoside triphosphate biosynthetic process;1.15422587047296e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.15422587047296e-06!GO:0006888;ER to Golgi vesicle-mediated transport;1.19702005040018e-06!GO:0009108;coenzyme biosynthetic process;1.33556875735612e-06!GO:0031982;vesicle;1.35029880426055e-06!GO:0009109;coenzyme catabolic process;1.36001671814024e-06!GO:0004298;threonine endopeptidase activity;1.74365108016962e-06!GO:0000245;spliceosome assembly;1.80820683763933e-06!GO:0009152;purine ribonucleotide biosynthetic process;1.81797836661145e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.91726155754391e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.91726155754391e-06!GO:0031410;cytoplasmic vesicle;1.98934675954434e-06!GO:0043066;negative regulation of apoptosis;2.0960686738388e-06!GO:0046034;ATP metabolic process;2.12386058354599e-06!GO:0032561;guanyl ribonucleotide binding;2.19659643190766e-06!GO:0019001;guanyl nucleotide binding;2.19659643190766e-06!GO:0016564;transcription repressor activity;2.68039255209424e-06!GO:0044431;Golgi apparatus part;3.13634138758132e-06!GO:0030120;vesicle coat;3.18164027986028e-06!GO:0030662;coated vesicle membrane;3.18164027986028e-06!GO:0009892;negative regulation of metabolic process;3.24869950191759e-06!GO:0016740;transferase activity;3.53559989484363e-06!GO:0015630;microtubule cytoskeleton;3.56823125374546e-06!GO:0006754;ATP biosynthetic process;3.92696659426771e-06!GO:0006753;nucleoside phosphate metabolic process;3.92696659426771e-06!GO:0003724;RNA helicase activity;3.95395316945378e-06!GO:0031324;negative regulation of cellular metabolic process;4.95614947757384e-06!GO:0048475;coated membrane;5.00110388405771e-06!GO:0030117;membrane coat;5.00110388405771e-06!GO:0015078;hydrogen ion transmembrane transporter activity;5.19836226097625e-06!GO:0009117;nucleotide metabolic process;5.25702548549635e-06!GO:0005762;mitochondrial large ribosomal subunit;5.89821846351867e-06!GO:0000315;organellar large ribosomal subunit;5.89821846351867e-06!GO:0006613;cotranslational protein targeting to membrane;6.29590929564909e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;7.0280385585683e-06!GO:0043623;cellular protein complex assembly;7.33134538481439e-06!GO:0003713;transcription coactivator activity;7.40375204130003e-06!GO:0045259;proton-transporting ATP synthase complex;8.77262426598965e-06!GO:0003714;transcription corepressor activity;8.89369252747682e-06!GO:0051427;hormone receptor binding;9.60311282605241e-06!GO:0000785;chromatin;1.00768600380254e-05!GO:0016469;proton-transporting two-sector ATPase complex;1.3558808867502e-05!GO:0006752;group transfer coenzyme metabolic process;1.46139407344994e-05!GO:0006261;DNA-dependent DNA replication;1.47458060597355e-05!GO:0005798;Golgi-associated vesicle;1.68079581048826e-05!GO:0006082;organic acid metabolic process;1.89686620167512e-05!GO:0043021;ribonucleoprotein binding;2.01339503448367e-05!GO:0051168;nuclear export;2.0497023691708e-05!GO:0006793;phosphorus metabolic process;2.06577780741722e-05!GO:0006796;phosphate metabolic process;2.06577780741722e-05!GO:0019752;carboxylic acid metabolic process;2.1556706892801e-05!GO:0035257;nuclear hormone receptor binding;2.181051795759e-05!GO:0003697;single-stranded DNA binding;2.19284306889251e-05!GO:0006091;generation of precursor metabolites and energy;2.39329464663887e-05!GO:0051170;nuclear import;2.77715640929889e-05!GO:0000151;ubiquitin ligase complex;2.8457975768894e-05!GO:0016853;isomerase activity;3.07806258952112e-05!GO:0000314;organellar small ribosomal subunit;3.10164905275715e-05!GO:0005763;mitochondrial small ribosomal subunit;3.10164905275715e-05!GO:0045454;cell redox homeostasis;3.11303245867042e-05!GO:0016779;nucleotidyltransferase activity;3.47480485749254e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;3.87233069150936e-05!GO:0031323;regulation of cellular metabolic process;4.7292568412416e-05!GO:0007243;protein kinase cascade;4.85555776375486e-05!GO:0006333;chromatin assembly or disassembly;5.3478412728204e-05!GO:0006606;protein import into nucleus;5.7143390252576e-05!GO:0005788;endoplasmic reticulum lumen;6.07245679752723e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;6.88206280787487e-05!GO:0000139;Golgi membrane;7.74363903136419e-05!GO:0048471;perinuclear region of cytoplasm;9.43677615705429e-05!GO:0008186;RNA-dependent ATPase activity;9.81200445216034e-05!GO:0006916;anti-apoptosis;0.000117963859890227!GO:0030867;rough endoplasmic reticulum membrane;0.00011830976917345!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000119970047419255!GO:0015399;primary active transmembrane transporter activity;0.000119970047419255!GO:0003899;DNA-directed RNA polymerase activity;0.000122178265942301!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.000128617964837799!GO:0015980;energy derivation by oxidation of organic compounds;0.000147528135511052!GO:0065004;protein-DNA complex assembly;0.000149134044945651!GO:0065007;biological regulation;0.00015953821543112!GO:0008033;tRNA processing;0.000166894760873945!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000174164954830085!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.00017442806980725!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000178118039811282!GO:0008654;phospholipid biosynthetic process;0.000191744570432937!GO:0031968;organelle outer membrane;0.000197438283764373!GO:0044452;nucleolar part;0.000198562656971132!GO:0006402;mRNA catabolic process;0.000203332116504759!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000209095546692599!GO:0003690;double-stranded DNA binding;0.000209125082558034!GO:0051789;response to protein stimulus;0.000230397292212643!GO:0006986;response to unfolded protein;0.000230397292212643!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000239224400949715!GO:0005769;early endosome;0.000247108761710408!GO:0003702;RNA polymerase II transcription factor activity;0.000265529959822742!GO:0050662;coenzyme binding;0.000277670965792011!GO:0005773;vacuole;0.000280671120215684!GO:0019867;outer membrane;0.000288346046682153!GO:0006350;transcription;0.000300575632223034!GO:0004004;ATP-dependent RNA helicase activity;0.000301744786919389!GO:0016310;phosphorylation;0.000305209888348742!GO:0007264;small GTPase mediated signal transduction;0.000324902354648118!GO:0008094;DNA-dependent ATPase activity;0.000328318620599379!GO:0006650;glycerophospholipid metabolic process;0.000332024064532975!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00036026776428485!GO:0006612;protein targeting to membrane;0.000365822673471572!GO:0005657;replication fork;0.000380352324659533!GO:0045893;positive regulation of transcription, DNA-dependent;0.000398353888594333!GO:0045941;positive regulation of transcription;0.000423717273538131!GO:0048522;positive regulation of cellular process;0.000428846288966897!GO:0046483;heterocycle metabolic process;0.000459613573180326!GO:0043681;protein import into mitochondrion;0.000460116855056741!GO:0005813;centrosome;0.00049780389169701!GO:0016481;negative regulation of transcription;0.000514022881332501!GO:0007051;spindle organization and biogenesis;0.000629469987053654!GO:0016363;nuclear matrix;0.000677704105235512!GO:0005741;mitochondrial outer membrane;0.000718773269104!GO:0042802;identical protein binding;0.000722601923634619!GO:0006302;double-strand break repair;0.000722601923634619!GO:0003678;DNA helicase activity;0.00072899227272015!GO:0006626;protein targeting to mitochondrion;0.000734009627086669!GO:0048500;signal recognition particle;0.000734120041851554!GO:0005815;microtubule organizing center;0.0007476013397984!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000750690439977587!GO:0003729;mRNA binding;0.000763250013891988!GO:0008250;oligosaccharyl transferase complex;0.000823149092668341!GO:0051920;peroxiredoxin activity;0.00082969888682913!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000835299133375803!GO:0000049;tRNA binding;0.000876129273573529!GO:0006891;intra-Golgi vesicle-mediated transport;0.000907782884332635!GO:0006401;RNA catabolic process;0.000929457590329073!GO:0010468;regulation of gene expression;0.000936621668335845!GO:0000323;lytic vacuole;0.000952646539568183!GO:0005764;lysosome;0.000952646539568183!GO:0030880;RNA polymerase complex;0.000966143788450411!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.000975111263282755!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00100828817154774!GO:0006383;transcription from RNA polymerase III promoter;0.00104904235736917!GO:0006839;mitochondrial transport;0.00106205533608579!GO:0005791;rough endoplasmic reticulum;0.00106205533608579!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00106205533608579!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00106205533608579!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00106205533608579!GO:0006950;response to stress;0.00106205533608579!GO:0033116;ER-Golgi intermediate compartment membrane;0.00106205533608579!GO:0046489;phosphoinositide biosynthetic process;0.0011049384583785!GO:0005885;Arp2/3 protein complex;0.00111544261054572!GO:0006414;translational elongation;0.00111559431721258!GO:0046983;protein dimerization activity;0.00111935499216776!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00114041324727862!GO:0005905;coated pit;0.00116337243940142!GO:0007010;cytoskeleton organization and biogenesis;0.00117652115503551!GO:0003682;chromatin binding;0.00122993499551726!GO:0016859;cis-trans isomerase activity;0.00126242301050367!GO:0016741;transferase activity, transferring one-carbon groups;0.00128911683343823!GO:0005684;U2-dependent spliceosome;0.00128911683343823!GO:0019899;enzyme binding;0.00131783071014476!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00132665340694038!GO:0031072;heat shock protein binding;0.00135317278131762!GO:0048037;cofactor binding;0.00137264288794915!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00138044313250384!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.00141722562293591!GO:0006807;nitrogen compound metabolic process;0.00145796076771225!GO:0006520;amino acid metabolic process;0.00151347696616807!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00151770307601116!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00156631135058031!GO:0000059;protein import into nucleus, docking;0.00156631135058031!GO:0051052;regulation of DNA metabolic process;0.00158862587699951!GO:0004576;oligosaccharyl transferase activity;0.00158972731728058!GO:0051287;NAD binding;0.00165815636710298!GO:0043492;ATPase activity, coupled to movement of substances;0.00166343343683546!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.00169094494829405!GO:0008168;methyltransferase activity;0.00173051048426166!GO:0022890;inorganic cation transmembrane transporter activity;0.00179480091859404!GO:0046474;glycerophospholipid biosynthetic process;0.0018839243231525!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00190449870560725!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00194518289184571!GO:0000428;DNA-directed RNA polymerase complex;0.00194518289184571!GO:0045786;negative regulation of progression through cell cycle;0.00194609776092088!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00194609776092088!GO:0005874;microtubule;0.00201577325789017!GO:0005819;spindle;0.00216902912590282!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.00217694248540878!GO:0016197;endosome transport;0.0021800365256426!GO:0051087;chaperone binding;0.00221259612270716!GO:0030384;phosphoinositide metabolic process;0.00223963211819126!GO:0008361;regulation of cell size;0.00223963211819126!GO:0016126;sterol biosynthetic process;0.00225945694652113!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00230116284248782!GO:0045047;protein targeting to ER;0.00230116284248782!GO:0032774;RNA biosynthetic process;0.00233991602309064!GO:0006695;cholesterol biosynthetic process;0.00234977321214812!GO:0003746;translation elongation factor activity;0.00246434282139623!GO:0035258;steroid hormone receptor binding;0.00247018489479748!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00248136392806068!GO:0008312;7S RNA binding;0.00248609816070682!GO:0006351;transcription, DNA-dependent;0.00257297938404342!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.00266389189715574!GO:0006338;chromatin remodeling;0.00266621676618446!GO:0044262;cellular carbohydrate metabolic process;0.00273214380245583!GO:0008022;protein C-terminus binding;0.00310324683622809!GO:0007006;mitochondrial membrane organization and biogenesis;0.0031593424000784!GO:0009308;amine metabolic process;0.0032121862687238!GO:0030176;integral to endoplasmic reticulum membrane;0.0032121862687238!GO:0006405;RNA export from nucleus;0.00329536494583391!GO:0046904;calcium oxalate binding;0.00332859153437552!GO:0030568;plasmin inhibitor activity;0.00332859153437552!GO:0016049;cell growth;0.00334310189735727!GO:0009165;nucleotide biosynthetic process;0.00340168064270272!GO:0019843;rRNA binding;0.00349235224502427!GO:0006611;protein export from nucleus;0.00359300001280824!GO:0051329;interphase of mitotic cell cycle;0.00359337280396209!GO:0030036;actin cytoskeleton organization and biogenesis;0.00372475789258576!GO:0006352;transcription initiation;0.0037280254299705!GO:0031252;leading edge;0.00378039278498644!GO:0016272;prefoldin complex;0.00380298048112042!GO:0065009;regulation of a molecular function;0.00380441335470193!GO:0006595;polyamine metabolic process;0.00380862126228589!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;0.00383065875958336!GO:0005048;signal sequence binding;0.00383065875958336!GO:0007017;microtubule-based process;0.00386637612073102!GO:0006519;amino acid and derivative metabolic process;0.00387408024707099!GO:0048468;cell development;0.00408041253659354!GO:0009116;nucleoside metabolic process;0.00410388113874907!GO:0031902;late endosome membrane;0.00411808470507725!GO:0018196;peptidyl-asparagine modification;0.0041928641047649!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0041928641047649!GO:0030663;COPI coated vesicle membrane;0.00447853800402971!GO:0030126;COPI vesicle coat;0.00447853800402971!GO:0030133;transport vesicle;0.00463147223416837!GO:0030659;cytoplasmic vesicle membrane;0.00474407503160131!GO:0045045;secretory pathway;0.00481788005064508!GO:0006749;glutathione metabolic process;0.00509582320163052!GO:0051128;regulation of cellular component organization and biogenesis;0.00546589041716302!GO:0001558;regulation of cell growth;0.00555932439275178!GO:0015631;tubulin binding;0.00581698575451176!GO:0016251;general RNA polymerase II transcription factor activity;0.00618832300827842!GO:0032508;DNA duplex unwinding;0.00618832300827842!GO:0032392;DNA geometric change;0.00618832300827842!GO:0005637;nuclear inner membrane;0.00618832300827842!GO:0044433;cytoplasmic vesicle part;0.00620704418056259!GO:0051252;regulation of RNA metabolic process;0.0062212811856716!GO:0008234;cysteine-type peptidase activity;0.00643459244261249!GO:0012506;vesicle membrane;0.00658624762936213!GO:0051325;interphase;0.00661249443266586!GO:0000775;chromosome, pericentric region;0.00661371404211003!GO:0030132;clathrin coat of coated pit;0.00673587229949539!GO:0008092;cytoskeletal protein binding;0.00691655341324533!GO:0043488;regulation of mRNA stability;0.00714508347885696!GO:0043487;regulation of RNA stability;0.00714508347885696!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00735486997996956!GO:0015002;heme-copper terminal oxidase activity;0.00735486997996956!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00735486997996956!GO:0004129;cytochrome-c oxidase activity;0.00735486997996956!GO:0044255;cellular lipid metabolic process;0.00756205761496583!GO:0030658;transport vesicle membrane;0.00775913540384598!GO:0051539;4 iron, 4 sulfur cluster binding;0.00793680000748991!GO:0008610;lipid biosynthetic process;0.00795154521131871!GO:0008139;nuclear localization sequence binding;0.00797115830858742!GO:0048487;beta-tubulin binding;0.00803403259218998!GO:0008180;signalosome;0.00829368915219968!GO:0046467;membrane lipid biosynthetic process;0.00843734682550717!GO:0043022;ribosome binding;0.00860589387041256!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00867960804328006!GO:0016407;acetyltransferase activity;0.00874231127913663!GO:0047017;prostaglandin-F synthase activity;0.00883356984122734!GO:0000776;kinetochore;0.00900369417616103!GO:0015992;proton transport;0.00903061402311476!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.00933605670096401!GO:0003711;transcription elongation regulator activity;0.0093473023129598!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.00948417560541653!GO:0005832;chaperonin-containing T-complex;0.00948557262499951!GO:0030118;clathrin coat;0.00964535012672242!GO:0007052;mitotic spindle organization and biogenesis;0.00970686851092271!GO:0030503;regulation of cell redox homeostasis;0.0097088550433633!GO:0006818;hydrogen transport;0.00978629729969797!GO:0004527;exonuclease activity;0.0100813190299751!GO:0030521;androgen receptor signaling pathway;0.0103330350121472!GO:0001889;liver development;0.0108486864766621!GO:0004448;isocitrate dehydrogenase activity;0.0109024583854964!GO:0043624;cellular protein complex disassembly;0.0109101002392526!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0109560498093419!GO:0007040;lysosome organization and biogenesis;0.0111269154571373!GO:0045892;negative regulation of transcription, DNA-dependent;0.0111300990214878!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0111731521487897!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0111731521487897!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0117421650035939!GO:0048518;positive regulation of biological process;0.0118986755528853!GO:0003955;NAD(P)H dehydrogenase (quinone) activity;0.0125133883789463!GO:0006497;protein amino acid lipidation;0.0127466909144052!GO:0030134;ER to Golgi transport vesicle;0.0132381707415653!GO:0042158;lipoprotein biosynthetic process;0.0140869666634538!GO:0003684;damaged DNA binding;0.0140869666634538!GO:0030029;actin filament-based process;0.0141515893726822!GO:0007030;Golgi organization and biogenesis;0.014187462922847!GO:0033673;negative regulation of kinase activity;0.0142136618464323!GO:0006469;negative regulation of protein kinase activity;0.0142136618464323!GO:0030137;COPI-coated vesicle;0.01428305423027!GO:0045449;regulation of transcription;0.014462229585913!GO:0000075;cell cycle checkpoint;0.0147184720991935!GO:0006144;purine base metabolic process;0.0148407742245044!GO:0047006;20-alpha-hydroxysteroid dehydrogenase activity;0.0149050204990621!GO:0006066;alcohol metabolic process;0.0155671233993955!GO:0051716;cellular response to stimulus;0.0155671233993955!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0156488190027032!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0156523801409446!GO:0030660;Golgi-associated vesicle membrane;0.0159984212914412!GO:0008632;apoptotic program;0.0159988903410767!GO:0004674;protein serine/threonine kinase activity;0.0160062328335654!GO:0005758;mitochondrial intermembrane space;0.0160214072087677!GO:0046982;protein heterodimerization activity;0.0161052607978968!GO:0019783;small conjugating protein-specific protease activity;0.0161252732431596!GO:0016408;C-acyltransferase activity;0.0161263882226833!GO:0008287;protein serine/threonine phosphatase complex;0.0165049363078343!GO:0051540;metal cluster binding;0.0168557886216819!GO:0051536;iron-sulfur cluster binding;0.0168557886216819!GO:0006268;DNA unwinding during replication;0.016914906544047!GO:0046519;sphingoid metabolic process;0.017544374362235!GO:0006672;ceramide metabolic process;0.0177710945652604!GO:0007021;tubulin folding;0.0179170218659008!GO:0009112;nucleobase metabolic process;0.0180241543618265!GO:0031901;early endosome membrane;0.0180859122701825!GO:0000096;sulfur amino acid metabolic process;0.0182481574271992!GO:0006310;DNA recombination;0.0183181532305708!GO:0031124;mRNA 3'-end processing;0.0183181532305708!GO:0008538;proteasome activator activity;0.0183181532305708!GO:0004185;serine carboxypeptidase activity;0.0183181532305708!GO:0032984;macromolecular complex disassembly;0.0184979660182274!GO:0004843;ubiquitin-specific protease activity;0.0185244875933179!GO:0022406;membrane docking;0.0185490597356363!GO:0048278;vesicle docking;0.0185490597356363!GO:0016790;thiolester hydrolase activity;0.0186850991089952!GO:0006778;porphyrin metabolic process;0.0189692408002953!GO:0033013;tetrapyrrole metabolic process;0.0189692408002953!GO:0004680;casein kinase activity;0.0196028687731561!GO:0009893;positive regulation of metabolic process;0.0196380122187399!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0202048262227146!GO:0015036;disulfide oxidoreductase activity;0.020307926437176!GO:0006740;NADPH regeneration;0.0205301061497634!GO:0006098;pentose-phosphate shunt;0.0205301061497634!GO:0043065;positive regulation of apoptosis;0.0209780637392135!GO:0006506;GPI anchor biosynthetic process;0.0211691158358491!GO:0043284;biopolymer biosynthetic process;0.0214176258732587!GO:0009451;RNA modification;0.0217160436437408!GO:0040008;regulation of growth;0.0218193897605429!GO:0031497;chromatin assembly;0.0218212199931955!GO:0006979;response to oxidative stress;0.0222653906691683!GO:0004221;ubiquitin thiolesterase activity;0.0227152230179357!GO:0016620;oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor;0.0227432543188698!GO:0031970;organelle envelope lumen;0.0227834312342831!GO:0006400;tRNA modification;0.0228297761990093!GO:0006892;post-Golgi vesicle-mediated transport;0.0230717843924693!GO:0004003;ATP-dependent DNA helicase activity;0.0230717843924693!GO:0006118;electron transport;0.0237934803608159!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0239132965738291!GO:0000118;histone deacetylase complex;0.0242539468528577!GO:0006904;vesicle docking during exocytosis;0.0243138227643573!GO:0047115;trans-1,2-dihydrobenzene-1,2-diol dehydrogenase activity;0.0243758251344056!GO:0051348;negative regulation of transferase activity;0.0244419506944858!GO:0007033;vacuole organization and biogenesis;0.024655305531857!GO:0006643;membrane lipid metabolic process;0.0249150816915028!GO:0051101;regulation of DNA binding;0.0253428701580257!GO:0005669;transcription factor TFIID complex;0.0254016146569757!GO:0045446;endothelial cell differentiation;0.0254016146569757!GO:0035267;NuA4 histone acetyltransferase complex;0.026473820806101!GO:0035035;histone acetyltransferase binding;0.0266384302980012!GO:0006658;phosphatidylserine metabolic process;0.0270187826498842!GO:0043068;positive regulation of programmed cell death;0.0271876544358164!GO:0005869;dynactin complex;0.0276584475092018!GO:0006334;nucleosome assembly;0.0276584475092018!GO:0000339;RNA cap binding;0.0277892770056698!GO:0008017;microtubule binding;0.0280139662481288!GO:0009303;rRNA transcription;0.0281195688703325!GO:0043189;H4/H2A histone acetyltransferase complex;0.0282328876866198!GO:0043241;protein complex disassembly;0.0290444482950935!GO:0006629;lipid metabolic process;0.0290444482950935!GO:0030508;thiol-disulfide exchange intermediate activity;0.0291180404672818!GO:0009066;aspartate family amino acid metabolic process;0.0295630640839574!GO:0006505;GPI anchor metabolic process;0.0296733444379986!GO:0016044;membrane organization and biogenesis;0.0299759307187987!GO:0008408;3'-5' exonuclease activity;0.0301622458275132!GO:0007088;regulation of mitosis;0.0301703310865305!GO:0040029;regulation of gene expression, epigenetic;0.0305771633786353!GO:0017166;vinculin binding;0.0311173193726376!GO:0005521;lamin binding;0.0311173193726376!GO:0006275;regulation of DNA replication;0.0315798920096947!GO:0043130;ubiquitin binding;0.0321075449911873!GO:0032182;small conjugating protein binding;0.0321075449911873!GO:0004177;aminopeptidase activity;0.0324239259353954!GO:0008320;protein transmembrane transporter activity;0.0324239259353954!GO:0030127;COPII vesicle coat;0.0324239259353954!GO:0012507;ER to Golgi transport vesicle membrane;0.0324239259353954!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0324732156040108!GO:0010257;NADH dehydrogenase complex assembly;0.0324732156040108!GO:0033108;mitochondrial respiratory chain complex assembly;0.0324732156040108!GO:0030518;steroid hormone receptor signaling pathway;0.03250093099282!GO:0006417;regulation of translation;0.0329909065873687!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0334507412516312!GO:0007242;intracellular signaling cascade;0.0334587730498764!GO:0019318;hexose metabolic process;0.0337041978574492!GO:0003923;GPI-anchor transamidase activity;0.0338848986237755!GO:0016255;attachment of GPI anchor to protein;0.0338848986237755!GO:0042765;GPI-anchor transamidase complex;0.0338848986237755!GO:0006376;mRNA splice site selection;0.0339427822800985!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0339427822800985!GO:0051338;regulation of transferase activity;0.0339427822800985!GO:0006984;ER-nuclear signaling pathway;0.0342541156913564!GO:0051775;response to redox state;0.0342638987283826!GO:0006980;redox signal response;0.0342638987283826!GO:0030125;clathrin vesicle coat;0.0342638987283826!GO:0030665;clathrin coated vesicle membrane;0.0342638987283826!GO:0030119;AP-type membrane coat adaptor complex;0.0343271434775452!GO:0006596;polyamine biosynthetic process;0.0345299257598807!GO:0032200;telomere organization and biogenesis;0.0345307832649164!GO:0000723;telomere maintenance;0.0345307832649164!GO:0009889;regulation of biosynthetic process;0.0346708472085687!GO:0006355;regulation of transcription, DNA-dependent;0.0349698817259072!GO:0042176;regulation of protein catabolic process;0.0349698817259072!GO:0006378;mRNA polyadenylation;0.0349812835520734!GO:0000123;histone acetyltransferase complex;0.0351795168217472!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0351795168217472!GO:0006564;L-serine biosynthetic process;0.0353944924344931!GO:0005844;polysome;0.0357185325409798!GO:0005996;monosaccharide metabolic process;0.0358139576642988!GO:0031396;regulation of protein ubiquitination;0.0360214745836417!GO:0022411;cellular component disassembly;0.0366641359680938!GO:0030140;trans-Golgi network transport vesicle;0.0368995009294248!GO:0006739;NADP metabolic process;0.0369319943546311!GO:0016125;sterol metabolic process;0.0375597062899869!GO:0000287;magnesium ion binding;0.0376071443909749!GO:0050790;regulation of catalytic activity;0.0377850051652869!GO:0022884;macromolecule transmembrane transporter activity;0.0381873851094937!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0381873851094937!GO:0042770;DNA damage response, signal transduction;0.0381873851094937!GO:0003979;UDP-glucose 6-dehydrogenase activity;0.0382124615662105!GO:0046398;UDP-glucuronate metabolic process;0.0382124615662105!GO:0006065;UDP-glucuronate biosynthetic process;0.0382124615662105!GO:0046399;glucuronate biosynthetic process;0.0382124615662105!GO:0000209;protein polyubiquitination;0.0386101810373816!GO:0042393;histone binding;0.0387602284784856!GO:0045944;positive regulation of transcription from RNA polymerase II promoter;0.0388302698017854!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.0388302698017854!GO:0045039;protein import into mitochondrial inner membrane;0.0388302698017854!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0397083901747451!GO:0005777;peroxisome;0.0397083901747451!GO:0042579;microbody;0.0397083901747451!GO:0042168;heme metabolic process;0.0397083901747451!GO:0008629;induction of apoptosis by intracellular signals;0.0397083901747451!GO:0043407;negative regulation of MAP kinase activity;0.0397083901747451!GO:0030433;ER-associated protein catabolic process;0.0399641283289863!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0399641283289863!GO:0004300;enoyl-CoA hydratase activity;0.0403142261502232!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0403142261502232!GO:0016791;phosphoric monoester hydrolase activity;0.0403678177018829!GO:0004192;cathepsin D activity;0.040631084812871!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.040631084812871!GO:0050811;GABA receptor binding;0.0410341268702383!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.041038717968222!GO:0004029;aldehyde dehydrogenase (NAD) activity;0.0412046467337126!GO:0008537;proteasome activator complex;0.0418979599762632!GO:0051248;negative regulation of protein metabolic process;0.0419129983981528!GO:0050681;androgen receptor binding;0.0419129983981528!GO:0000178;exosome (RNase complex);0.042166440917514!GO:0051651;maintenance of cellular localization;0.0429574419912454!GO:0007034;vacuolar transport;0.04302344548456!GO:0006356;regulation of transcription from RNA polymerase I promoter;0.0434864427012619!GO:0006661;phosphatidylinositol biosynthetic process;0.0436056101938983!GO:0004532;exoribonuclease activity;0.0438140183878673!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0438140183878673!GO:0008286;insulin receptor signaling pathway;0.0441793646254631!GO:0030131;clathrin adaptor complex;0.04497826479541!GO:0050750;low-density lipoprotein receptor binding;0.0455678235488101!GO:0046966;thyroid hormone receptor binding;0.0455695798409508!GO:0003756;protein disulfide isomerase activity;0.0457250392512122!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0457250392512122!GO:0031399;regulation of protein modification process;0.0460347214860954!GO:0046488;phosphatidylinositol metabolic process;0.0461378933655875!GO:0030968;unfolded protein response;0.0461881862330982!GO:0022415;viral reproductive process;0.0462146632683256!GO:0016311;dephosphorylation;0.0462641948326517!GO:0016903;oxidoreductase activity, acting on the aldehyde or oxo group of donors;0.0465992492536754!GO:0001666;response to hypoxia;0.0469683129214499!GO:0043549;regulation of kinase activity;0.0487097376473404 | |||
|sample_id=10484 | |sample_id=10484 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 99: | ||
|sample_tissue=liver | |sample_tissue=liver | ||
|top_motifs=HNF1A:3.68810866596;FOXQ1:2.50479712587;FOXD3:2.32699312722;ONECUT1,2:2.22184601046;ADNP_IRX_SIX_ZHX:2.00853097422;HNF4A_NR2F1,2:2.0028509829;FOXA2:1.7555617709;HOX{A6,A7,B6,B7}:1.72523561611;NR6A1:1.70665555788;AIRE:1.68106855961;NKX2-1,4:1.3937918511;T:1.37241876422;bHLH_family:1.21684780571;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.15265937972;DBP:1.1057026607;FOX{D1,D2}:1.09114724554;RORA:1.01513378726;NFE2L2:0.995691908652;CUX2:0.969203082386;POU6F1:0.954321163959;FOX{F1,F2,J1}:0.94907724752;EN1,2:0.854702615088;CEBPA,B_DDIT3:0.824771265751;STAT5{A,B}:0.802091078077;TEF:0.792641936231;ZBTB16:0.776397991976;NKX3-1:0.732720695823;CDX1,2,4:0.666859157585;PAX8:0.63671778062;PITX1..3:0.623502391548;ZEB1:0.62198562414;SOX2:0.609594289166;GATA6:0.604668073201;ELK1,4_GABP{A,B1}:0.601308954158;CRX:0.600618482819;ZNF143:0.584002621348;FOXP1:0.564696350041;RBPJ:0.561799743225;NKX3-2:0.559577682266;MYOD1:0.55728653626;SOX5:0.556127547521;NFY{A,B,C}:0.529035479456;HOX{A4,D4}:0.524711572098;FOX{I1,J2}:0.516745519107;TFAP2B:0.490457297065;HMGA1,2:0.488576987653;PBX1:0.476136713615;TFDP1:0.468782078554;EBF1:0.468619994676;PAX1,9:0.460111910273;EVI1:0.456996983344;TLX1..3_NFIC{dimer}:0.451767911007;LHX3,4:0.441091825545;RFX1:0.43449228103;E2F1..5:0.433270695952;HIC1:0.430179630745;NFE2:0.426918909814;NR1H4:0.422559740824;BPTF:0.390925991804;NKX6-1,2:0.383988978043;MED-1{core}:0.383826869549;ATF2:0.350591138925;YY1:0.345063449077;RXR{A,B,G}:0.340607823164;ZFP161:0.328088217275;ESRRA:0.309998117102;SNAI1..3:0.302287857952;NKX2-3_NKX2-5:0.298635565518;RFX2..5_RFXANK_RFXAP:0.277687525988;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.276939611743;HOXA9_MEIS1:0.269927412977;ATF4:0.263761321943;EP300:0.245840226007;OCT4_SOX2{dimer}:0.227934745231;BREu{core}:0.226535949889;STAT1,3:0.222428699369;IKZF2:0.217282747826;STAT2,4,6:0.213151271482;PDX1:0.209355173672;FOXL1:0.203196917986;AHR_ARNT_ARNT2:0.191817878366;TBP:0.176110105208;PATZ1:0.174490877854;MTE{core}:0.162839017364;IRF7:0.149943407504;MYB:0.137889134099;VSX1,2:0.136989306161;POU5F1:0.106758676688;SOX{8,9,10}:0.0893849395567;GFI1B:0.0651055612608;FOXN1:0.0626610073406;FOXP3:0.0574483536236;POU1F1:0.056616586565;EGR1..3:0.053943643145;NFIL3:0.0308014502709;TFAP2{A,C}:0.0279340810417;TEAD1:0.0183166659152;HAND1,2:-0.0115941272542;MEF2{A,B,C,D}:-0.0438306191817;CDC5L:-0.0460415151232;FOSL2:-0.049069155126;HES1:-0.0618051377042;LMO2:-0.0636065258741;PAX5:-0.0771020307972;NR5A1,2:-0.0787114045118;IKZF1:-0.0909366643272;IRF1,2:-0.0976633880526;NFIX:-0.0992032652253;HLF:-0.120358880744;SREBF1,2:-0.12358381392;NHLH1,2:-0.130199960619;PRRX1,2:-0.148820793656;MAZ:-0.174696359132;NRF1:-0.176055549465;ATF5_CREB3:-0.177864153207;UFEwm:-0.188387333891;SP1:-0.192237197291;NFKB1_REL_RELA:-0.194420453114;LEF1_TCF7_TCF7L1,2:-0.202284195576;FOS_FOS{B,L1}_JUN{B,D}:-0.227273525939;BACH2:-0.23098474345;GATA4:-0.236058786044;PAX4:-0.23669182347;SOX17:-0.23902886034;PRDM1:-0.272615062497;TBX4,5:-0.276484910769;ZNF384:-0.295976053669;NANOG:-0.305426916349;RREB1:-0.306895424602;TOPORS:-0.327128554861;XCPE1{core}:-0.327690144765;NFATC1..3:-0.331199736711;SRF:-0.332759821082;ZNF148:-0.353376468178;MYBL2:-0.368672438789;JUN:-0.376356026453;PAX2:-0.40020362717;GTF2A1,2:-0.402990871216;ALX4:-0.420401669375;HOX{A5,B5}:-0.422749558601;MYFfamily:-0.423453957853;GTF2I:-0.432466663175;MZF1:-0.449215057324;ELF1,2,4:-0.453269034359;AR:-0.462471596571;TP53:-0.480206972056;TAL1_TCF{3,4,12}:-0.481570914614;GFI1:-0.491731139872;POU2F1..3:-0.49224242729;XBP1:-0.533045463838;MTF1:-0.536063302386;ZBTB6:-0.544080305271;HIF1A:-0.546228331076;MAFB:-0.554877447781;PAX6:-0.556487060102;DMAP1_NCOR{1,2}_SMARC:-0.564879840827;TGIF1:-0.568290286994;HSF1,2:-0.622670264448;SPI1:-0.624980563861;FOXO1,3,4:-0.639419417354;REST:-0.639510263124;NANOG{mouse}:-0.656984980102;TFCP2:-0.664053537358;HBP1_HMGB_SSRP1_UBTF:-0.668852487771;SPIB:-0.678646148543;PPARG:-0.69114009594;RXRA_VDR{dimer}:-0.694807227587;NR3C1:-0.705982939211;KLF4:-0.715446682305;FOXM1:-0.733337191141;RUNX1..3:-0.748189581094;ESR1:-0.762086840558;CREB1:-0.77264805085;ETS1,2:-0.792052672555;ARID5B:-0.793448597875;ZIC1..3:-0.815885506233;SPZ1:-0.838544328268;ATF6:-0.880169983043;TFAP4:-0.887130768549;NFE2L1:-0.900093414758;ZNF423:-0.947378116655;ALX1:-1.03042557965;NKX2-2,8:-1.1124202121;PAX3,7:-1.13740652235;SMAD1..7,9:-1.20469232486;ZNF238:-1.30929113199;POU3F1..4:-1.32981390729;GCM1,2:-1.40672313649;HMX1:-1.44265031542;TLX2:-1.48144590085;GZF1:-1.50837498891;GLI1..3:-1.56360152494 | |top_motifs=HNF1A:3.68810866596;FOXQ1:2.50479712587;FOXD3:2.32699312722;ONECUT1,2:2.22184601046;ADNP_IRX_SIX_ZHX:2.00853097422;HNF4A_NR2F1,2:2.0028509829;FOXA2:1.7555617709;HOX{A6,A7,B6,B7}:1.72523561611;NR6A1:1.70665555788;AIRE:1.68106855961;NKX2-1,4:1.3937918511;T:1.37241876422;bHLH_family:1.21684780571;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.15265937972;DBP:1.1057026607;FOX{D1,D2}:1.09114724554;RORA:1.01513378726;NFE2L2:0.995691908652;CUX2:0.969203082386;POU6F1:0.954321163959;FOX{F1,F2,J1}:0.94907724752;EN1,2:0.854702615088;CEBPA,B_DDIT3:0.824771265751;STAT5{A,B}:0.802091078077;TEF:0.792641936231;ZBTB16:0.776397991976;NKX3-1:0.732720695823;CDX1,2,4:0.666859157585;PAX8:0.63671778062;PITX1..3:0.623502391548;ZEB1:0.62198562414;SOX2:0.609594289166;GATA6:0.604668073201;ELK1,4_GABP{A,B1}:0.601308954158;CRX:0.600618482819;ZNF143:0.584002621348;FOXP1:0.564696350041;RBPJ:0.561799743225;NKX3-2:0.559577682266;MYOD1:0.55728653626;SOX5:0.556127547521;NFY{A,B,C}:0.529035479456;HOX{A4,D4}:0.524711572098;FOX{I1,J2}:0.516745519107;TFAP2B:0.490457297065;HMGA1,2:0.488576987653;PBX1:0.476136713615;TFDP1:0.468782078554;EBF1:0.468619994676;PAX1,9:0.460111910273;EVI1:0.456996983344;TLX1..3_NFIC{dimer}:0.451767911007;LHX3,4:0.441091825545;RFX1:0.43449228103;E2F1..5:0.433270695952;HIC1:0.430179630745;NFE2:0.426918909814;NR1H4:0.422559740824;BPTF:0.390925991804;NKX6-1,2:0.383988978043;MED-1{core}:0.383826869549;ATF2:0.350591138925;YY1:0.345063449077;RXR{A,B,G}:0.340607823164;ZFP161:0.328088217275;ESRRA:0.309998117102;SNAI1..3:0.302287857952;NKX2-3_NKX2-5:0.298635565518;RFX2..5_RFXANK_RFXAP:0.277687525988;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.276939611743;HOXA9_MEIS1:0.269927412977;ATF4:0.263761321943;EP300:0.245840226007;OCT4_SOX2{dimer}:0.227934745231;BREu{core}:0.226535949889;STAT1,3:0.222428699369;IKZF2:0.217282747826;STAT2,4,6:0.213151271482;PDX1:0.209355173672;FOXL1:0.203196917986;AHR_ARNT_ARNT2:0.191817878366;TBP:0.176110105208;PATZ1:0.174490877854;MTE{core}:0.162839017364;IRF7:0.149943407504;MYB:0.137889134099;VSX1,2:0.136989306161;POU5F1:0.106758676688;SOX{8,9,10}:0.0893849395567;GFI1B:0.0651055612608;FOXN1:0.0626610073406;FOXP3:0.0574483536236;POU1F1:0.056616586565;EGR1..3:0.053943643145;NFIL3:0.0308014502709;TFAP2{A,C}:0.0279340810417;TEAD1:0.0183166659152;HAND1,2:-0.0115941272542;MEF2{A,B,C,D}:-0.0438306191817;CDC5L:-0.0460415151232;FOSL2:-0.049069155126;HES1:-0.0618051377042;LMO2:-0.0636065258741;PAX5:-0.0771020307972;NR5A1,2:-0.0787114045118;IKZF1:-0.0909366643272;IRF1,2:-0.0976633880526;NFIX:-0.0992032652253;HLF:-0.120358880744;SREBF1,2:-0.12358381392;NHLH1,2:-0.130199960619;PRRX1,2:-0.148820793656;MAZ:-0.174696359132;NRF1:-0.176055549465;ATF5_CREB3:-0.177864153207;UFEwm:-0.188387333891;SP1:-0.192237197291;NFKB1_REL_RELA:-0.194420453114;LEF1_TCF7_TCF7L1,2:-0.202284195576;FOS_FOS{B,L1}_JUN{B,D}:-0.227273525939;BACH2:-0.23098474345;GATA4:-0.236058786044;PAX4:-0.23669182347;SOX17:-0.23902886034;PRDM1:-0.272615062497;TBX4,5:-0.276484910769;ZNF384:-0.295976053669;NANOG:-0.305426916349;RREB1:-0.306895424602;TOPORS:-0.327128554861;XCPE1{core}:-0.327690144765;NFATC1..3:-0.331199736711;SRF:-0.332759821082;ZNF148:-0.353376468178;MYBL2:-0.368672438789;JUN:-0.376356026453;PAX2:-0.40020362717;GTF2A1,2:-0.402990871216;ALX4:-0.420401669375;HOX{A5,B5}:-0.422749558601;MYFfamily:-0.423453957853;GTF2I:-0.432466663175;MZF1:-0.449215057324;ELF1,2,4:-0.453269034359;AR:-0.462471596571;TP53:-0.480206972056;TAL1_TCF{3,4,12}:-0.481570914614;GFI1:-0.491731139872;POU2F1..3:-0.49224242729;XBP1:-0.533045463838;MTF1:-0.536063302386;ZBTB6:-0.544080305271;HIF1A:-0.546228331076;MAFB:-0.554877447781;PAX6:-0.556487060102;DMAP1_NCOR{1,2}_SMARC:-0.564879840827;TGIF1:-0.568290286994;HSF1,2:-0.622670264448;SPI1:-0.624980563861;FOXO1,3,4:-0.639419417354;REST:-0.639510263124;NANOG{mouse}:-0.656984980102;TFCP2:-0.664053537358;HBP1_HMGB_SSRP1_UBTF:-0.668852487771;SPIB:-0.678646148543;PPARG:-0.69114009594;RXRA_VDR{dimer}:-0.694807227587;NR3C1:-0.705982939211;KLF4:-0.715446682305;FOXM1:-0.733337191141;RUNX1..3:-0.748189581094;ESR1:-0.762086840558;CREB1:-0.77264805085;ETS1,2:-0.792052672555;ARID5B:-0.793448597875;ZIC1..3:-0.815885506233;SPZ1:-0.838544328268;ATF6:-0.880169983043;TFAP4:-0.887130768549;NFE2L1:-0.900093414758;ZNF423:-0.947378116655;ALX1:-1.03042557965;NKX2-2,8:-1.1124202121;PAX3,7:-1.13740652235;SMAD1..7,9:-1.20469232486;ZNF238:-1.30929113199;POU3F1..4:-1.32981390729;GCM1,2:-1.40672313649;HMX1:-1.44265031542;TLX2:-1.48144590085;GZF1:-1.50837498891;GLI1..3:-1.56360152494 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10484-107A7;search_select_hide=table117:FF:10484-107A7 | |||
}} | }} | ||
Latest revision as of 14:26, 3 June 2020
| Name: | hepatoma cell line:Li-7 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11271 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11271
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11271
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.564 |
| 10 | 10 | 0.55 |
| 100 | 100 | 0.0805 |
| 101 | 101 | 0.131 |
| 102 | 102 | 0.0628 |
| 103 | 103 | 0.34 |
| 104 | 104 | 0.513 |
| 105 | 105 | 0.662 |
| 106 | 106 | 0.922 |
| 107 | 107 | 0.418 |
| 108 | 108 | 0.564 |
| 109 | 109 | 0.0711 |
| 11 | 11 | 0.0121 |
| 110 | 110 | 0.156 |
| 111 | 111 | 0.477 |
| 112 | 112 | 0.375 |
| 113 | 113 | 6.95257e-4 |
| 114 | 114 | 0.234 |
| 115 | 115 | 0.598 |
| 116 | 116 | 0.246 |
| 117 | 117 | 0.118 |
| 118 | 118 | 0.278 |
| 119 | 119 | 0.965 |
| 12 | 12 | 0.172 |
| 120 | 120 | 0.721 |
| 121 | 121 | 0.0354 |
| 122 | 122 | 0.706 |
| 123 | 123 | 0.831 |
| 124 | 124 | 0.304 |
| 125 | 125 | 0.846 |
| 126 | 126 | 0.411 |
| 127 | 127 | 0.0141 |
| 128 | 128 | 0.00547 |
| 129 | 129 | 0.605 |
| 13 | 13 | 0.45 |
| 130 | 130 | 0.897 |
| 131 | 131 | 0.242 |
| 132 | 132 | 0.271 |
| 133 | 133 | 0.479 |
| 134 | 134 | 0.53 |
| 135 | 135 | 0.179 |
| 136 | 136 | 0.0825 |
| 137 | 137 | 0.195 |
| 138 | 138 | 0.879 |
| 139 | 139 | 0.513 |
| 14 | 14 | 0.512 |
| 140 | 140 | 0.313 |
| 141 | 141 | 0.149 |
| 142 | 142 | 0.89 |
| 143 | 143 | 1.42638e-4 |
| 144 | 144 | 0.769 |
| 145 | 145 | 0.514 |
| 146 | 146 | 0.573 |
| 147 | 147 | 0.223 |
| 148 | 148 | 0.346 |
| 149 | 149 | 0.605 |
| 15 | 15 | 0.493 |
| 150 | 150 | 0.839 |
| 151 | 151 | 0.608 |
| 152 | 152 | 0.809 |
| 153 | 153 | 0.111 |
| 154 | 154 | 0.41 |
| 155 | 155 | 0.542 |
| 156 | 156 | 0.389 |
| 157 | 157 | 0.305 |
| 158 | 158 | 0.256 |
| 159 | 159 | 0.836 |
| 16 | 16 | 0.286 |
| 160 | 160 | 0.055 |
| 161 | 161 | 0.849 |
| 162 | 162 | 0.973 |
| 163 | 163 | 0.21 |
| 164 | 164 | 0.921 |
| 165 | 165 | 0.749 |
| 166 | 166 | 0.348 |
| 167 | 167 | 0.36 |
| 168 | 168 | 0.4 |
| 169 | 169 | 0.0865 |
| 17 | 17 | 0.389 |
| 18 | 18 | 0.407 |
| 19 | 19 | 0.199 |
| 2 | 2 | 0.19 |
| 20 | 20 | 0.029 |
| 21 | 21 | 0.485 |
| 22 | 22 | 0.0657 |
| 23 | 23 | 0.379 |
| 24 | 24 | 0.697 |
| 25 | 25 | 0.435 |
| 26 | 26 | 0.532 |
| 27 | 27 | 0.0165 |
| 28 | 28 | 0.687 |
| 29 | 29 | 0.332 |
| 3 | 3 | 0.14 |
| 30 | 30 | 0.357 |
| 31 | 31 | 0.964 |
| 32 | 32 | 2.80139e-4 |
| 33 | 33 | 0.603 |
| 34 | 34 | 0.333 |
| 35 | 35 | 0.899 |
| 36 | 36 | 0.628 |
| 37 | 37 | 0.247 |
| 38 | 38 | 0.457 |
| 39 | 39 | 0.652 |
| 4 | 4 | 0.336 |
| 40 | 40 | 0.708 |
| 41 | 41 | 0.00385 |
| 42 | 42 | 0.353 |
| 43 | 43 | 0.123 |
| 44 | 44 | 0.974 |
| 45 | 45 | 0.832 |
| 46 | 46 | 0.476 |
| 47 | 47 | 0.418 |
| 48 | 48 | 0.214 |
| 49 | 49 | 0.32 |
| 5 | 5 | 0.476 |
| 50 | 50 | 0.977 |
| 51 | 51 | 0.0874 |
| 52 | 52 | 0.916 |
| 53 | 53 | 0.451 |
| 54 | 54 | 0.83 |
| 55 | 55 | 0.362 |
| 56 | 56 | 0.817 |
| 57 | 57 | 0.75 |
| 58 | 58 | 0.305 |
| 59 | 59 | 0.0798 |
| 6 | 6 | 0.565 |
| 60 | 60 | 0.71 |
| 61 | 61 | 0.975 |
| 62 | 62 | 0.0585 |
| 63 | 63 | 0.784 |
| 64 | 64 | 0.436 |
| 65 | 65 | 0.172 |
| 66 | 66 | 0.138 |
| 67 | 67 | 0.0162 |
| 68 | 68 | 0.172 |
| 69 | 69 | 0.757 |
| 7 | 7 | 0.304 |
| 70 | 70 | 0.397 |
| 71 | 71 | 0.161 |
| 72 | 72 | 0.277 |
| 73 | 73 | 0.621 |
| 74 | 74 | 0.579 |
| 75 | 75 | 0.819 |
| 76 | 76 | 0.727 |
| 77 | 77 | 0.568 |
| 78 | 78 | 0.128 |
| 79 | 79 | 0.00296 |
| 8 | 8 | 0.67 |
| 80 | 80 | 0.294 |
| 81 | 81 | 0.573 |
| 82 | 82 | 0.0117 |
| 83 | 83 | 0.384 |
| 84 | 84 | 0.579 |
| 85 | 85 | 0.271 |
| 86 | 86 | 0.445 |
| 87 | 87 | 0.434 |
| 88 | 88 | 0.973 |
| 89 | 89 | 0.112 |
| 9 | 9 | 0.00778 |
| 90 | 90 | 0.927 |
| 91 | 91 | 0.107 |
| 92 | 92 | 0.534 |
| 93 | 93 | 0.939 |
| 94 | 94 | 0.0834 |
| 95 | 95 | 0.324 |
| 96 | 96 | 0.326 |
| 97 | 97 | 0.867 |
| 98 | 98 | 0.247 |
| 99 | 99 | 0.626 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11271
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0100578 hepatoma cell line sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000181 (metabolising cell)
0000417 (endopolyploid cell)
0000668 (parenchymal cell)
0000412 (polyploid cell)
0000255 (eukaryotic cell)
0000182 (hepatocyte)
DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
7 (disease of anatomical entity)
305 (carcinoma)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002107 (liver)
0002100 (trunk)
0001007 (digestive system)
0004119 (endoderm-derived structure)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009569 (subdivision of trunk)
0002368 (endocrine gland)
0005177 (trunk region element)
0002365 (exocrine gland)
0005172 (abdomen element)
0006925 (digestive gland)
0002530 (gland)
0010317 (germ layer / neural crest derived structure)
0005173 (abdominal segment element)
0002417 (abdominal segment of trunk)
0000949 (endocrine system)
0002330 (exocrine system)
0000916 (abdomen)
0002423 (hepatobiliary system)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0100224 (liver cell line sample)
0100578 (hepatoma cell line sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
CL:0000223 (endodermal cell)
UBERON:0001041 (foregut)
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0003104 (mesenchyme)
UBERON:0004161 (septum transversum)
UBERON:0009497 (epithelium of foregut-midgut junction)
UBERON:0010316 (germ layer / neural crest)
