FF:11596-120H3: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005565 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |accession_numbers=CAGE;DRX008426;DRR009298;DRZ000723;DRZ002108;DRZ012073;DRZ013458 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002113,UBERON:0002100,UBERON:0000483,UBERON:0001851,UBERON:0000479,UBERON:0000064,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0006555,UBERON:0006554,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0003103,UBERON:0009569,UBERON:0004211,UBERON:0009773,UBERON:0000489,UBERON:0000353,UBERON:0005177,UBERON:0005172,UBERON:0001231,UBERON:0004819,UBERON:0005173,UBERON:0004810,UBERON:0001285,UBERON:0001225,UBERON:0011143,UBERON:0001008,UBERON:0002417,UBERON:0008987,UBERON:0007684,UBERON:0000916 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000255,CL:1000497,CL:0002518,CL:0002681,CL:1000449,CL:1000507,CL:0002584,CL:1000494 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000151,FF:0000152 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Renal%2520Cortical%2520Epithelial%2520Cells%252c%2520donor2.CNhs12728.11596-120H3.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Renal%2520Cortical%2520Epithelial%2520Cells%252c%2520donor2.CNhs12728.11596-120H3.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Renal%2520Cortical%2520Epithelial%2520Cells%252c%2520donor2.CNhs12728.11596-120H3.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Renal%2520Cortical%2520Epithelial%2520Cells%252c%2520donor2.CNhs12728.11596-120H3.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Renal%2520Cortical%2520Epithelial%2520Cells%252c%2520donor2.CNhs12728.11596-120H3.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11596-120H3 | |id=FF:11596-120H3 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000152 | ||
|is_obsolete= | |||
|library_id=CNhs12728 | |||
|library_id_phase_based=2:CNhs12728 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11596 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11596 | |||
|name=Renal Cortical Epithelial Cells, donor2 | |name=Renal Cortical Epithelial Cells, donor2 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12728,LSID960,release012,COMPLETED | |profile_hcage=CNhs12728,LSID960,release012,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=120 | |rna_box=120 | ||
|rna_catalog_number=SC4115 | |rna_catalog_number=SC4115 | ||
| Line 57: | Line 78: | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 91: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.02841459489782e-242!GO:0005737;cytoplasm;3.78962468981999e-208!GO:0043226;organelle;7.44030250676618e-190!GO:0043229;intracellular organelle;1.53085143692302e-189!GO:0043231;intracellular membrane-bound organelle;3.07418823669254e-178!GO:0043227;membrane-bound organelle;4.51262185070529e-178!GO:0044422;organelle part;4.9426652548811e-148!GO:0044446;intracellular organelle part;1.73939330740594e-146!GO:0044444;cytoplasmic part;1.09520623045827e-142!GO:0032991;macromolecular complex;1.39415131624317e-96!GO:0005515;protein binding;3.32923230115013e-83!GO:0044238;primary metabolic process;1.08089041738498e-82!GO:0030529;ribonucleoprotein complex;1.45453121208699e-82!GO:0044237;cellular metabolic process;3.53523797468935e-80!GO:0043170;macromolecule metabolic process;1.5691073334974e-73!GO:0043233;organelle lumen;3.97849902245535e-66!GO:0031974;membrane-enclosed lumen;3.97849902245535e-66!GO:0005739;mitochondrion;6.89116143934058e-66!GO:0044428;nuclear part;7.4569863370258e-66!GO:0003723;RNA binding;5.2289285550238e-65!GO:0005634;nucleus;5.0078238110043e-61!GO:0016043;cellular component organization and biogenesis;6.0163358792794e-56!GO:0031090;organelle membrane;5.26647015556122e-55!GO:0019538;protein metabolic process;5.96230715533287e-54!GO:0005840;ribosome;7.18626546710876e-52!GO:0033036;macromolecule localization;1.13867253056571e-50!GO:0006412;translation;2.03751648331167e-50!GO:0015031;protein transport;5.3734229521692e-50!GO:0043234;protein complex;2.15756662388116e-49!GO:0008104;protein localization;2.17331996565632e-47!GO:0044267;cellular protein metabolic process;2.28705469540392e-47!GO:0044260;cellular macromolecule metabolic process;2.55743109391165e-47!GO:0045184;establishment of protein localization;1.78920559013292e-46!GO:0003735;structural constituent of ribosome;9.42282794555052e-45!GO:0009058;biosynthetic process;1.00305922511065e-44!GO:0044429;mitochondrial part;1.28573266933271e-44!GO:0031967;organelle envelope;5.09496944102925e-42!GO:0006396;RNA processing;1.17207960533306e-41!GO:0031975;envelope;1.44132002456746e-41!GO:0043228;non-membrane-bound organelle;2.14970033300421e-40!GO:0043232;intracellular non-membrane-bound organelle;2.14970033300421e-40!GO:0046907;intracellular transport;4.13539007030134e-40!GO:0044249;cellular biosynthetic process;1.0174644250189e-39!GO:0005829;cytosol;1.93832573587127e-39!GO:0009059;macromolecule biosynthetic process;2.23814950148538e-39!GO:0033279;ribosomal subunit;2.62913246588007e-39!GO:0031981;nuclear lumen;3.7666171709963e-37!GO:0006996;organelle organization and biogenesis;6.75594679130888e-37!GO:0043283;biopolymer metabolic process;6.75594679130888e-37!GO:0065003;macromolecular complex assembly;7.61922488747741e-34!GO:0016071;mRNA metabolic process;4.13741623569923e-33!GO:0006886;intracellular protein transport;1.89472011102017e-32!GO:0008380;RNA splicing;1.99725429744557e-32!GO:0022607;cellular component assembly;4.54677364616995e-31!GO:0010467;gene expression;2.99267535507381e-30!GO:0022613;ribonucleoprotein complex biogenesis and assembly;8.0374825715296e-29!GO:0005830;cytosolic ribosome (sensu Eukaryota);8.35290972510999e-29!GO:0006397;mRNA processing;8.81077037444439e-29!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.69216185391219e-28!GO:0005740;mitochondrial envelope;2.57418745997135e-28!GO:0051641;cellular localization;1.53275588141524e-27!GO:0051649;establishment of cellular localization;1.88311912362624e-27!GO:0031966;mitochondrial membrane;2.62267621265356e-26!GO:0019866;organelle inner membrane;4.84820998745079e-26!GO:0012505;endomembrane system;4.12279573870166e-25!GO:0044445;cytosolic part;2.80138639987718e-24!GO:0005743;mitochondrial inner membrane;4.88560865690783e-24!GO:0005681;spliceosome;1.01011996191858e-23!GO:0007049;cell cycle;4.27875324782241e-23!GO:0000166;nucleotide binding;6.50857504328231e-23!GO:0006259;DNA metabolic process;1.57780638955034e-22!GO:0005654;nucleoplasm;2.2722188475637e-21!GO:0006119;oxidative phosphorylation;4.05854283381191e-21!GO:0015935;small ribosomal subunit;5.78258281434899e-21!GO:0016462;pyrophosphatase activity;8.91731386804837e-21!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.12379840785871e-20!GO:0016817;hydrolase activity, acting on acid anhydrides;1.69779382888428e-20!GO:0006457;protein folding;4.02886439870349e-20!GO:0017111;nucleoside-triphosphatase activity;9.51127740127011e-20!GO:0031980;mitochondrial lumen;1.02377523830635e-19!GO:0005759;mitochondrial matrix;1.02377523830635e-19!GO:0005783;endoplasmic reticulum;1.13302685217538e-19!GO:0048770;pigment granule;1.46467358188928e-19!GO:0042470;melanosome;1.46467358188928e-19!GO:0015934;large ribosomal subunit;2.67069079462666e-19!GO:0005794;Golgi apparatus;8.81059923217946e-19!GO:0022618;protein-RNA complex assembly;2.72666322863608e-18!GO:0016874;ligase activity;2.9308555393292e-18!GO:0044265;cellular macromolecule catabolic process;4.41472573380404e-18!GO:0044455;mitochondrial membrane part;1.92195550795317e-17!GO:0032553;ribonucleotide binding;2.11410419770786e-17!GO:0032555;purine ribonucleotide binding;2.11410419770786e-17!GO:0022402;cell cycle process;3.81749974641489e-17!GO:0044432;endoplasmic reticulum part;6.80284742162264e-17!GO:0005730;nucleolus;8.25223579893057e-17!GO:0017076;purine nucleotide binding;9.07224046064812e-17!GO:0044451;nucleoplasm part;1.20845540709013e-16!GO:0009057;macromolecule catabolic process;1.32806932225068e-16!GO:0000278;mitotic cell cycle;1.60895128224386e-16!GO:0051603;proteolysis involved in cellular protein catabolic process;1.82177343078493e-16!GO:0043285;biopolymer catabolic process;2.32409895785602e-16!GO:0006511;ubiquitin-dependent protein catabolic process;3.2436086260505e-16!GO:0019941;modification-dependent protein catabolic process;3.2436086260505e-16!GO:0043632;modification-dependent macromolecule catabolic process;3.2436086260505e-16!GO:0044257;cellular protein catabolic process;6.40589192872708e-16!GO:0051186;cofactor metabolic process;1.47698887607973e-15!GO:0000502;proteasome complex (sensu Eukaryota);1.52191516638989e-15!GO:0006605;protein targeting;1.5586918392127e-15!GO:0044248;cellular catabolic process;1.84742877989073e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.10016193817748e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;3.41447131687124e-15!GO:0006512;ubiquitin cycle;3.48407244660982e-15!GO:0016192;vesicle-mediated transport;4.98716880764665e-15!GO:0030163;protein catabolic process;5.40573072192975e-15!GO:0008134;transcription factor binding;5.87489393334206e-15!GO:0005761;mitochondrial ribosome;8.30490133961281e-15!GO:0000313;organellar ribosome;8.30490133961281e-15!GO:0005635;nuclear envelope;8.81524956571424e-15!GO:0005746;mitochondrial respiratory chain;1.0002624885709e-14!GO:0006974;response to DNA damage stimulus;1.05138582794742e-14!GO:0008135;translation factor activity, nucleic acid binding;1.3571337976219e-14!GO:0043412;biopolymer modification;1.3573855938115e-14!GO:0048193;Golgi vesicle transport;2.48932653052756e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);8.0045852065591e-14!GO:0051082;unfolded protein binding;8.01955984608543e-14!GO:0050136;NADH dehydrogenase (quinone) activity;1.0429752518924e-13!GO:0003954;NADH dehydrogenase activity;1.0429752518924e-13!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.0429752518924e-13!GO:0012501;programmed cell death;1.49731868940116e-13!GO:0003676;nucleic acid binding;1.87525497698688e-13!GO:0006464;protein modification process;2.02946296675036e-13!GO:0005524;ATP binding;3.04068474444242e-13!GO:0006915;apoptosis;3.37097098280025e-13!GO:0032559;adenyl ribonucleotide binding;7.45824742549285e-13!GO:0031965;nuclear membrane;1.06561873940901e-12!GO:0006732;coenzyme metabolic process;1.14819310432428e-12!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.1724371904773e-12!GO:0000087;M phase of mitotic cell cycle;1.4212921324852e-12!GO:0022403;cell cycle phase;1.73908586436126e-12!GO:0005789;endoplasmic reticulum membrane;2.09775568843771e-12!GO:0007067;mitosis;2.20463087662375e-12!GO:0005694;chromosome;3.18206144584055e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;3.36528798123166e-12!GO:0030554;adenyl nucleotide binding;3.63092154730989e-12!GO:0000398;nuclear mRNA splicing, via spliceosome;3.71518559655044e-12!GO:0000375;RNA splicing, via transesterification reactions;3.71518559655044e-12!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;3.71518559655044e-12!GO:0008219;cell death;4.51349920302461e-12!GO:0016265;death;4.51349920302461e-12!GO:0006413;translational initiation;5.17016155117654e-12!GO:0044453;nuclear membrane part;5.32776283575229e-12!GO:0042775;organelle ATP synthesis coupled electron transport;5.78709254792635e-12!GO:0042773;ATP synthesis coupled electron transport;5.78709254792635e-12!GO:0030964;NADH dehydrogenase complex (quinone);6.80425961279438e-12!GO:0045271;respiratory chain complex I;6.80425961279438e-12!GO:0005747;mitochondrial respiratory chain complex I;6.80425961279438e-12!GO:0051301;cell division;1.02945500143797e-11!GO:0042254;ribosome biogenesis and assembly;1.26820530399542e-11!GO:0006281;DNA repair;1.57714618092686e-11!GO:0003743;translation initiation factor activity;1.68038223195324e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.74423811071975e-11!GO:0044427;chromosomal part;2.55827533733064e-11!GO:0009055;electron carrier activity;4.05220993569192e-11!GO:0009259;ribonucleotide metabolic process;4.56196378555106e-11!GO:0043687;post-translational protein modification;5.96008767550889e-11!GO:0006461;protein complex assembly;6.76858450384165e-11!GO:0009719;response to endogenous stimulus;9.82230814451361e-11!GO:0006446;regulation of translational initiation;1.15086508122229e-10!GO:0006163;purine nucleotide metabolic process;1.21495752958331e-10!GO:0016070;RNA metabolic process;1.40971241857559e-10!GO:0006913;nucleocytoplasmic transport;1.6386417835003e-10!GO:0005768;endosome;2.06039854667593e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.15563351537902e-10!GO:0000279;M phase;3.14015900915551e-10!GO:0009056;catabolic process;3.80967164798555e-10!GO:0009150;purine ribonucleotide metabolic process;4.37191132480278e-10!GO:0051169;nuclear transport;4.67991241095273e-10!GO:0005643;nuclear pore;6.83879409028818e-10!GO:0006164;purine nucleotide biosynthetic process;6.90118128374339e-10!GO:0009260;ribonucleotide biosynthetic process;7.78649669360955e-10!GO:0043067;regulation of programmed cell death;9.91416736562934e-10!GO:0008565;protein transporter activity;1.02265141581798e-09!GO:0015630;microtubule cytoskeleton;1.05577186707645e-09!GO:0000074;regulation of progression through cell cycle;1.11320144964889e-09!GO:0042623;ATPase activity, coupled;1.28021076359116e-09!GO:0042981;regulation of apoptosis;1.29123462834474e-09!GO:0003924;GTPase activity;1.30254580921596e-09!GO:0051276;chromosome organization and biogenesis;1.31331340194183e-09!GO:0051726;regulation of cell cycle;1.33887883840363e-09!GO:0003712;transcription cofactor activity;1.99557660152124e-09!GO:0009152;purine ribonucleotide biosynthetic process;2.41673656647309e-09!GO:0008639;small protein conjugating enzyme activity;2.80134362245563e-09!GO:0016604;nuclear body;2.94493765566335e-09!GO:0006260;DNA replication;3.0981009436477e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;3.18643142015006e-09!GO:0051246;regulation of protein metabolic process;3.68228277229595e-09!GO:0009141;nucleoside triphosphate metabolic process;3.78422801025691e-09!GO:0016887;ATPase activity;3.87181258934344e-09!GO:0009199;ribonucleoside triphosphate metabolic process;4.09656276306831e-09!GO:0004842;ubiquitin-protein ligase activity;4.16589116851823e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;4.76713039450962e-09!GO:0048523;negative regulation of cellular process;6.16050208532782e-09!GO:0019787;small conjugating protein ligase activity;6.23154374779893e-09!GO:0006399;tRNA metabolic process;6.64481057424063e-09!GO:0065002;intracellular protein transport across a membrane;7.25564819498572e-09!GO:0005793;ER-Golgi intermediate compartment;7.52270285630509e-09!GO:0044431;Golgi apparatus part;7.90578040077965e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;7.91897097083992e-09!GO:0009144;purine nucleoside triphosphate metabolic process;7.91897097083992e-09!GO:0007005;mitochondrion organization and biogenesis;8.41236124678196e-09!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.1211058881434e-08!GO:0043069;negative regulation of programmed cell death;1.2140240119805e-08!GO:0009060;aerobic respiration;1.51141015748545e-08!GO:0015986;ATP synthesis coupled proton transport;1.76803168956454e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.76803168956454e-08!GO:0009142;nucleoside triphosphate biosynthetic process;1.92424644734149e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.92424644734149e-08!GO:0031988;membrane-bound vesicle;1.9794219759352e-08!GO:0007010;cytoskeleton organization and biogenesis;2.06860583597887e-08!GO:0016740;transferase activity;2.44677247297634e-08!GO:0016023;cytoplasmic membrane-bound vesicle;2.54114797154898e-08!GO:0017038;protein import;2.72599539786264e-08!GO:0004386;helicase activity;2.73405277747101e-08!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;2.98859567107846e-08!GO:0050657;nucleic acid transport;3.47697384036362e-08!GO:0051236;establishment of RNA localization;3.47697384036362e-08!GO:0050658;RNA transport;3.47697384036362e-08!GO:0006403;RNA localization;3.64547417781877e-08!GO:0043066;negative regulation of apoptosis;3.72379274219787e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;3.72379274219787e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;3.72379274219787e-08!GO:0048475;coated membrane;3.85766532313418e-08!GO:0030117;membrane coat;3.85766532313418e-08!GO:0031982;vesicle;3.88294325862934e-08!GO:0051188;cofactor biosynthetic process;3.98301605975963e-08!GO:0065004;protein-DNA complex assembly;4.55014016340704e-08!GO:0045333;cellular respiration;4.92370776375934e-08!GO:0031410;cytoplasmic vesicle;5.50989812078047e-08!GO:0048519;negative regulation of biological process;5.75636166980211e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;6.05336256584831e-08!GO:0004812;aminoacyl-tRNA ligase activity;6.05336256584831e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;6.05336256584831e-08!GO:0006325;establishment and/or maintenance of chromatin architecture;6.6836564414177e-08!GO:0016881;acid-amino acid ligase activity;7.40118599128086e-08!GO:0043038;amino acid activation;7.75468183011522e-08!GO:0006418;tRNA aminoacylation for protein translation;7.75468183011522e-08!GO:0043039;tRNA aminoacylation;7.75468183011522e-08!GO:0030532;small nuclear ribonucleoprotein complex;7.99429503350706e-08!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;8.11980036129443e-08!GO:0005525;GTP binding;8.21424451771477e-08!GO:0019829;cation-transporting ATPase activity;8.27874376754966e-08!GO:0030120;vesicle coat;8.32841398571832e-08!GO:0030662;coated vesicle membrane;8.32841398571832e-08!GO:0046930;pore complex;1.00665215974946e-07!GO:0009117;nucleotide metabolic process;1.11825351935231e-07!GO:0046034;ATP metabolic process;1.11825351935231e-07!GO:0050794;regulation of cellular process;1.18552648104961e-07!GO:0006916;anti-apoptosis;1.68180385030383e-07!GO:0006099;tricarboxylic acid cycle;1.82886016703589e-07!GO:0046356;acetyl-CoA catabolic process;1.82886016703589e-07!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;1.87969932320986e-07!GO:0006323;DNA packaging;1.94251431179705e-07!GO:0016607;nuclear speck;1.9986590432569e-07!GO:0006364;rRNA processing;2.74917378995035e-07!GO:0008026;ATP-dependent helicase activity;2.99815265283975e-07!GO:0006888;ER to Golgi vesicle-mediated transport;3.08928986120163e-07!GO:0007249;I-kappaB kinase/NF-kappaB cascade;3.22366456879877e-07!GO:0000785;chromatin;3.22366456879877e-07!GO:0016787;hydrolase activity;3.82722269087786e-07!GO:0030036;actin cytoskeleton organization and biogenesis;3.95710001813849e-07!GO:0031252;leading edge;4.5917537160814e-07!GO:0000139;Golgi membrane;4.76580759103698e-07!GO:0006754;ATP biosynthetic process;4.87689381170523e-07!GO:0006753;nucleoside phosphate metabolic process;4.87689381170523e-07!GO:0016072;rRNA metabolic process;5.63675193292814e-07!GO:0006084;acetyl-CoA metabolic process;6.10065165510198e-07!GO:0044440;endosomal part;6.93399970907228e-07!GO:0010008;endosome membrane;6.93399970907228e-07!GO:0009108;coenzyme biosynthetic process;7.76967292350555e-07!GO:0006333;chromatin assembly or disassembly;8.10871655336041e-07!GO:0006793;phosphorus metabolic process;8.9486800605896e-07!GO:0006796;phosphate metabolic process;8.9486800605896e-07!GO:0051187;cofactor catabolic process;9.45417429570221e-07!GO:0032561;guanyl ribonucleotide binding;1.05639085835002e-06!GO:0019001;guanyl nucleotide binding;1.05639085835002e-06!GO:0016469;proton-transporting two-sector ATPase complex;1.37942471270518e-06!GO:0005770;late endosome;1.46019125161372e-06!GO:0051028;mRNA transport;1.50870469740252e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;2.03318622686693e-06!GO:0005839;proteasome core complex (sensu Eukaryota);2.15785121960496e-06!GO:0009109;coenzyme catabolic process;2.23314875745642e-06!GO:0016126;sterol biosynthetic process;2.41364169109014e-06!GO:0032446;protein modification by small protein conjugation;2.52932012294426e-06!GO:0005773;vacuole;2.54077936527597e-06!GO:0006334;nucleosome assembly;2.58375307611661e-06!GO:0008654;phospholipid biosynthetic process;2.70362561969462e-06!GO:0003697;single-stranded DNA binding;3.09089424390012e-06!GO:0030029;actin filament-based process;3.11927952981783e-06!GO:0015078;hydrogen ion transmembrane transporter activity;3.27940824249645e-06!GO:0008092;cytoskeletal protein binding;3.72258065931431e-06!GO:0043566;structure-specific DNA binding;4.08714784936375e-06!GO:0016567;protein ubiquitination;4.34260838352836e-06!GO:0006752;group transfer coenzyme metabolic process;4.63623316326459e-06!GO:0051170;nuclear import;4.70668743285127e-06!GO:0005788;endoplasmic reticulum lumen;4.96811786347223e-06!GO:0006366;transcription from RNA polymerase II promoter;5.79846517817452e-06!GO:0048471;perinuclear region of cytoplasm;6.74567127333419e-06!GO:0045259;proton-transporting ATP synthase complex;7.25853385338269e-06!GO:0016853;isomerase activity;8.14864842477952e-06!GO:0006613;cotranslational protein targeting to membrane;8.98241541545434e-06!GO:0000245;spliceosome assembly;9.20264386705137e-06!GO:0031497;chromatin assembly;9.63873027099537e-06!GO:0016310;phosphorylation;9.73312905889269e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;1.17045878140359e-05!GO:0006606;protein import into nucleus;1.25814173929042e-05!GO:0004298;threonine endopeptidase activity;1.38418142705478e-05!GO:0005798;Golgi-associated vesicle;1.50340243191927e-05!GO:0006695;cholesterol biosynthetic process;1.88566414124464e-05!GO:0019899;enzyme binding;1.95214954109101e-05!GO:0016563;transcription activator activity;1.98389524975673e-05!GO:0007264;small GTPase mediated signal transduction;2.21882813017991e-05!GO:0003714;transcription corepressor activity;2.26667927699939e-05!GO:0043623;cellular protein complex assembly;2.28853691261996e-05!GO:0005819;spindle;2.29398275901362e-05!GO:0000323;lytic vacuole;2.3810693885873e-05!GO:0005764;lysosome;2.3810693885873e-05!GO:0005762;mitochondrial large ribosomal subunit;2.38843740512596e-05!GO:0000315;organellar large ribosomal subunit;2.38843740512596e-05!GO:0042802;identical protein binding;2.71104752581242e-05!GO:0005874;microtubule;2.81289360243544e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;2.97872771647282e-05!GO:0050789;regulation of biological process;3.29995630915691e-05!GO:0005667;transcription factor complex;4.74490792686245e-05!GO:0016491;oxidoreductase activity;4.91145528149208e-05!GO:0005769;early endosome;5.06120951600267e-05!GO:0003724;RNA helicase activity;5.26482136957048e-05!GO:0043021;ribonucleoprotein binding;6.507830301049e-05!GO:0045454;cell redox homeostasis;7.13839279771814e-05!GO:0051427;hormone receptor binding;7.57785463002664e-05!GO:0030867;rough endoplasmic reticulum membrane;8.0809457095832e-05!GO:0005905;coated pit;8.90675746777292e-05!GO:0008610;lipid biosynthetic process;9.33901076373602e-05!GO:0000314;organellar small ribosomal subunit;9.52861879109882e-05!GO:0005763;mitochondrial small ribosomal subunit;9.52861879109882e-05!GO:0016859;cis-trans isomerase activity;9.64164930830577e-05!GO:0007243;protein kinase cascade;9.69341402777332e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000101722740710098!GO:0016779;nucleotidyltransferase activity;0.000103996457982786!GO:0003713;transcription coactivator activity;0.000104260873646783!GO:0000151;ubiquitin ligase complex;0.000105821068961346!GO:0051329;interphase of mitotic cell cycle;0.00011002769525537!GO:0005813;centrosome;0.000114683864758122!GO:0016044;membrane organization and biogenesis;0.000121729480440344!GO:0045786;negative regulation of progression through cell cycle;0.000122536258660549!GO:0001726;ruffle;0.000125956930686737!GO:0035257;nuclear hormone receptor binding;0.000153337905735479!GO:0019843;rRNA binding;0.000155057036306945!GO:0030118;clathrin coat;0.000163406784552386!GO:0005815;microtubule organizing center;0.000173276804271043!GO:0006612;protein targeting to membrane;0.000188683113011433!GO:0048522;positive regulation of cellular process;0.000207802910242685!GO:0051325;interphase;0.000207802910242685!GO:0031968;organelle outer membrane;0.000248388875541339!GO:0007051;spindle organization and biogenesis;0.000252300540902612!GO:0009165;nucleotide biosynthetic process;0.000268362672104778!GO:0015980;energy derivation by oxidation of organic compounds;0.0002772574701107!GO:0005048;signal sequence binding;0.000300717029523988!GO:0048468;cell development;0.000309035117139403!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000326193401236667!GO:0005885;Arp2/3 protein complex;0.000327635071515128!GO:0016564;transcription repressor activity;0.000332703312775345!GO:0006261;DNA-dependent DNA replication;0.000336948394282978!GO:0019867;outer membrane;0.000342946153457621!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.0003706351628215!GO:0008250;oligosaccharyl transferase complex;0.000374455349021671!GO:0030133;transport vesicle;0.000383722801478063!GO:0016568;chromatin modification;0.000437729366518296!GO:0033116;ER-Golgi intermediate compartment membrane;0.000464956797634172!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000491482644716811!GO:0065009;regulation of a molecular function;0.000493821843943412!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000507264797365376!GO:0006839;mitochondrial transport;0.000535646149984179!GO:0005741;mitochondrial outer membrane;0.000581247043816287!GO:0046474;glycerophospholipid biosynthetic process;0.000582727441129252!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000621001737219245!GO:0051168;nuclear export;0.000630353294966425!GO:0008186;RNA-dependent ATPase activity;0.000695373476230378!GO:0003899;DNA-directed RNA polymerase activity;0.0007020453752116!GO:0046467;membrane lipid biosynthetic process;0.000711253465217671!GO:0004576;oligosaccharyl transferase activity;0.000745447437002745!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00074554254914441!GO:0030658;transport vesicle membrane;0.000754342992073403!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.000802567976111861!GO:0051920;peroxiredoxin activity;0.000802567976111861!GO:0007088;regulation of mitosis;0.000846416467168403!GO:0008632;apoptotic program;0.000883075598397617!GO:0043681;protein import into mitochondrion;0.00092827563386236!GO:0009892;negative regulation of metabolic process;0.00095028558581459!GO:0007017;microtubule-based process;0.00103512428309931!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00103512428309931!GO:0008361;regulation of cell size;0.00108121763357065!GO:0009967;positive regulation of signal transduction;0.00111454702407923!GO:0006626;protein targeting to mitochondrion;0.00120342429762878!GO:0008637;apoptotic mitochondrial changes;0.00127370277942221!GO:0005791;rough endoplasmic reticulum;0.00130845394853449!GO:0051128;regulation of cellular component organization and biogenesis;0.00132359294262349!GO:0001558;regulation of cell growth;0.00132548834837884!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00136104841532546!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00138550920266482!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00138550920266482!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00138550920266482!GO:0030119;AP-type membrane coat adaptor complex;0.00139825480529438!GO:0043065;positive regulation of apoptosis;0.00141638307476212!GO:0000775;chromosome, pericentric region;0.0014177322566689!GO:0044262;cellular carbohydrate metabolic process;0.00151600162193241!GO:0016049;cell growth;0.00151600162193241!GO:0016363;nuclear matrix;0.00152377436056701!GO:0018196;peptidyl-asparagine modification;0.00158060742731381!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00158060742731381!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00163641996237182!GO:0005657;replication fork;0.00166895180585451!GO:0006007;glucose catabolic process;0.00167045267634538!GO:0031324;negative regulation of cellular metabolic process;0.00167589806076265!GO:0006650;glycerophospholipid metabolic process;0.00175210319642677!GO:0007006;mitochondrial membrane organization and biogenesis;0.00175681006783206!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.00179417104613428!GO:0006891;intra-Golgi vesicle-mediated transport;0.00187370566157079!GO:0030660;Golgi-associated vesicle membrane;0.0018830925509089!GO:0030027;lamellipodium;0.00188669410930443!GO:0004004;ATP-dependent RNA helicase activity;0.001890987855859!GO:0043068;positive regulation of programmed cell death;0.00192545256017439!GO:0006383;transcription from RNA polymerase III promoter;0.00197576602452956!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00197957095678148!GO:0030131;clathrin adaptor complex;0.00201462565224151!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.00204892254030454!GO:0048487;beta-tubulin binding;0.00209415222133676!GO:0045045;secretory pathway;0.00221041775700396!GO:0051789;response to protein stimulus;0.00233033702713095!GO:0006986;response to unfolded protein;0.00233033702713095!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00233204256496133!GO:0000075;cell cycle checkpoint;0.00238769368572205!GO:0006414;translational elongation;0.00240837512120373!GO:0035258;steroid hormone receptor binding;0.00243668238590033!GO:0046489;phosphoinositide biosynthetic process;0.00264729795506992!GO:0048500;signal recognition particle;0.00265690608013426!GO:0003729;mRNA binding;0.00287127042212564!GO:0005856;cytoskeleton;0.00303638613508133!GO:0008139;nuclear localization sequence binding;0.00315895810279785!GO:0051252;regulation of RNA metabolic process;0.00317656457959282!GO:0031072;heat shock protein binding;0.00321559856470901!GO:0031902;late endosome membrane;0.00345045298241538!GO:0051087;chaperone binding;0.00362539917360344!GO:0003779;actin binding;0.00367736973399368!GO:0015992;proton transport;0.00378792153109007!GO:0005684;U2-dependent spliceosome;0.00381936923789722!GO:0030521;androgen receptor signaling pathway;0.00388763502583525!GO:0000059;protein import into nucleus, docking;0.00396381935229201!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00398183673577111!GO:0044452;nucleolar part;0.00398183673577111!GO:0015631;tubulin binding;0.00419520331097475!GO:0051540;metal cluster binding;0.00430144565833137!GO:0051536;iron-sulfur cluster binding;0.00430144565833137!GO:0030663;COPI coated vesicle membrane;0.00430144565833137!GO:0030126;COPI vesicle coat;0.00430144565833137!GO:0000786;nucleosome;0.0043523371744251!GO:0005938;cell cortex;0.00445942868106256!GO:0008094;DNA-dependent ATPase activity;0.00454730520847548!GO:0006302;double-strand break repair;0.00456067019554566!GO:0006818;hydrogen transport;0.00456067019554566!GO:0030176;integral to endoplasmic reticulum membrane;0.00499206770640286!GO:0000776;kinetochore;0.00509607897261699!GO:0016197;endosome transport;0.00512334427355613!GO:0001666;response to hypoxia;0.00518227417725177!GO:0051101;regulation of DNA binding;0.00523213555282636!GO:0006401;RNA catabolic process;0.00537545852967506!GO:0004674;protein serine/threonine kinase activity;0.00541896957822989!GO:0001836;release of cytochrome c from mitochondria;0.00544694710183411!GO:0005637;nuclear inner membrane;0.00545882609102849!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00554482090292131!GO:0030880;RNA polymerase complex;0.00569885831131479!GO:0003690;double-stranded DNA binding;0.00570255540613949!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00571374374798265!GO:0045047;protein targeting to ER;0.00571374374798265!GO:0008629;induction of apoptosis by intracellular signals;0.00572091148672528!GO:0051287;NAD binding;0.00572967145977742!GO:0043488;regulation of mRNA stability;0.00572967145977742!GO:0043487;regulation of RNA stability;0.00572967145977742!GO:0003684;damaged DNA binding;0.00576959989344632!GO:0008047;enzyme activator activity;0.00576959989344632!GO:0030134;ER to Golgi transport vesicle;0.00577619044127082!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00604313483463953!GO:0005869;dynactin complex;0.00610585145956039!GO:0008312;7S RNA binding;0.00611323301731095!GO:0030031;cell projection biogenesis;0.00618727830594161!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00621307386113947!GO:0030659;cytoplasmic vesicle membrane;0.00622847552555463!GO:0030125;clathrin vesicle coat;0.00637706374810468!GO:0030665;clathrin coated vesicle membrane;0.00637706374810468!GO:0006643;membrane lipid metabolic process;0.00647076706424033!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00656565152120254!GO:0015399;primary active transmembrane transporter activity;0.00656565152120254!GO:0006091;generation of precursor metabolites and energy;0.00673735980560477!GO:0006417;regulation of translation;0.00718081651854378!GO:0006402;mRNA catabolic process;0.0073961669166903!GO:0030127;COPII vesicle coat;0.00755354138869507!GO:0012507;ER to Golgi transport vesicle membrane;0.00755354138869507!GO:0019752;carboxylic acid metabolic process;0.0076010115457122!GO:0006082;organic acid metabolic process;0.00777290695033954!GO:0030132;clathrin coat of coated pit;0.00796694734565838!GO:0008022;protein C-terminus binding;0.00812979520095041!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00814092552254305!GO:0006352;transcription initiation;0.00814433278311996!GO:0006950;response to stress;0.00815500223988067!GO:0007093;mitotic cell cycle checkpoint;0.00839615749301595!GO:0006509;membrane protein ectodomain proteolysis;0.00847532130284824!GO:0033619;membrane protein proteolysis;0.00847532130284824!GO:0017166;vinculin binding;0.00857453734202209!GO:0006740;NADPH regeneration;0.00867110113551668!GO:0006098;pentose-phosphate shunt;0.00867110113551668!GO:0006979;response to oxidative stress;0.00941172142037184!GO:0008033;tRNA processing;0.00948081068290168!GO:0005774;vacuolar membrane;0.00948750286766853!GO:0007052;mitotic spindle organization and biogenesis;0.00951120541567305!GO:0006144;purine base metabolic process;0.00962936277955287!GO:0030137;COPI-coated vesicle;0.00972544550709772!GO:0006595;polyamine metabolic process;0.00996453601931615!GO:0016408;C-acyltransferase activity;0.0100061757507808!GO:0009116;nucleoside metabolic process;0.0102836733639704!GO:0016272;prefoldin complex;0.0106061267488773!GO:0051052;regulation of DNA metabolic process;0.0106061267488773!GO:0044433;cytoplasmic vesicle part;0.0108408060899699!GO:0046365;monosaccharide catabolic process;0.0109000427735551!GO:0003746;translation elongation factor activity;0.0109070761099561!GO:0043022;ribosome binding;0.010954274070715!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0113280199008747!GO:0000428;DNA-directed RNA polymerase complex;0.0113280199008747!GO:0032940;secretion by cell;0.0113424706438719!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0115030462472186!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0115030462472186!GO:0051098;regulation of binding;0.0115897677345308!GO:0008180;signalosome;0.0115897677345308!GO:0005832;chaperonin-containing T-complex;0.0115897677345308!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0118829215982521!GO:0008154;actin polymerization and/or depolymerization;0.0119856982729803!GO:0031124;mRNA 3'-end processing;0.0124175118260385!GO:0012506;vesicle membrane;0.0124336392799896!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0124383310813741!GO:0033043;regulation of organelle organization and biogenesis;0.0124383310813741!GO:0004177;aminopeptidase activity;0.0124385086455513!GO:0000049;tRNA binding;0.0125098376036987!GO:0000209;protein polyubiquitination;0.0126322411751698!GO:0032508;DNA duplex unwinding;0.0126578459583781!GO:0032392;DNA geometric change;0.0126578459583781!GO:0030145;manganese ion binding;0.0127489033690231!GO:0040008;regulation of growth;0.0129368042703491!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0129368042703491!GO:0006672;ceramide metabolic process;0.0129871484397012!GO:0016301;kinase activity;0.0130072832161944!GO:0050681;androgen receptor binding;0.0130215502969221!GO:0046519;sphingoid metabolic process;0.0130301344810221!GO:0033673;negative regulation of kinase activity;0.0133296181074573!GO:0006469;negative regulation of protein kinase activity;0.0133296181074573!GO:0009112;nucleobase metabolic process;0.0133865919245853!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0133865919245853!GO:0006611;protein export from nucleus;0.0138240751397676!GO:0048518;positive regulation of biological process;0.0140039114643185!GO:0007021;tubulin folding;0.0140039114643185!GO:0006096;glycolysis;0.0140039114643185!GO:0006220;pyrimidine nucleotide metabolic process;0.0140039114643185!GO:0045893;positive regulation of transcription, DNA-dependent;0.0142727054806458!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0146948932873536!GO:0003678;DNA helicase activity;0.0149160850610208!GO:0000096;sulfur amino acid metabolic process;0.0150060050390182!GO:0050662;coenzyme binding;0.0152458408332544!GO:0030384;phosphoinositide metabolic process;0.0153476724015647!GO:0000339;RNA cap binding;0.0155824942428194!GO:0007265;Ras protein signal transduction;0.0159022019985245!GO:0004680;casein kinase activity;0.0166904906772583!GO:0000082;G1/S transition of mitotic cell cycle;0.0166906494027292!GO:0046483;heterocycle metabolic process;0.0169954393958999!GO:0006289;nucleotide-excision repair;0.0170884151072505!GO:0043281;regulation of caspase activity;0.017128163152487!GO:0019320;hexose catabolic process;0.0172420025382308!GO:0006892;post-Golgi vesicle-mediated transport;0.0173216804067551!GO:0031901;early endosome membrane;0.0175046867963158!GO:0016251;general RNA polymerase II transcription factor activity;0.0175160810260347!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0179349420082101!GO:0031625;ubiquitin protein ligase binding;0.0182289164401975!GO:0050790;regulation of catalytic activity;0.018533193629467!GO:0008283;cell proliferation;0.0191286281611685!GO:0019318;hexose metabolic process;0.0192333011574837!GO:0031529;ruffle organization and biogenesis;0.019609604807518!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0196147633588255!GO:0005996;monosaccharide metabolic process;0.0198027722948149!GO:0003711;transcription elongation regulator activity;0.0198027722948149!GO:0006268;DNA unwinding during replication;0.0198653537927623!GO:0006497;protein amino acid lipidation;0.0198685547961597!GO:0051348;negative regulation of transferase activity;0.0199512951862731!GO:0043154;negative regulation of caspase activity;0.0204915349105565!GO:0006405;RNA export from nucleus;0.0205093630683165!GO:0006644;phospholipid metabolic process;0.0206631786199164!GO:0005758;mitochondrial intermembrane space;0.0207283626772144!GO:0022406;membrane docking;0.0207283626772144!GO:0048278;vesicle docking;0.0207283626772144!GO:0043284;biopolymer biosynthetic process;0.0207936788497307!GO:0006310;DNA recombination;0.0208398086330459!GO:0046164;alcohol catabolic process;0.0208590252114884!GO:0016481;negative regulation of transcription;0.0212902656248138!GO:0032594;protein transport within lipid bilayer;0.0216162650232387!GO:0032907;transforming growth factor-beta3 production;0.0216162650232387!GO:0032596;protein transport into lipid raft;0.0216162650232387!GO:0032910;regulation of transforming growth factor-beta3 production;0.0216162650232387!GO:0032595;B cell receptor transport within lipid bilayer;0.0216162650232387!GO:0033606;chemokine receptor transport within lipid bilayer;0.0216162650232387!GO:0032600;chemokine receptor transport out of lipid raft;0.0216162650232387!GO:0032599;protein transport out of lipid raft;0.0216162650232387!GO:0032597;B cell receptor transport into lipid raft;0.0216162650232387!GO:0032913;negative regulation of transforming growth factor-beta3 production;0.0216162650232387!GO:0007034;vacuolar transport;0.0216854880458138!GO:0016584;nucleosome positioning;0.0220756022826496!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0223254852550402!GO:0065007;biological regulation;0.0224642427594089!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0229277959154406!GO:0031970;organelle envelope lumen;0.0229838591066708!GO:0005862;muscle thin filament tropomyosin;0.02354559113689!GO:0004748;ribonucleoside-diphosphate reductase activity;0.0244743239786727!GO:0016728;oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor;0.0244743239786727!GO:0032984;macromolecular complex disassembly;0.0248651928808995!GO:0008234;cysteine-type peptidase activity;0.0251018425916727!GO:0050811;GABA receptor binding;0.0252134122990995!GO:0006917;induction of apoptosis;0.0253632150877057!GO:0043624;cellular protein complex disassembly;0.0253632150877057!GO:0044437;vacuolar part;0.0253632150877057!GO:0031326;regulation of cellular biosynthetic process;0.0253632150877057!GO:0005765;lysosomal membrane;0.0256092722097459!GO:0043130;ubiquitin binding;0.0256092722097459!GO:0032182;small conjugating protein binding;0.0256092722097459!GO:0006520;amino acid metabolic process;0.0259594251534822!GO:0006984;ER-nuclear signaling pathway;0.0259827505137967!GO:0046822;regulation of nucleocytoplasmic transport;0.0259915083948866!GO:0000086;G2/M transition of mitotic cell cycle;0.0260471264100486!GO:0031543;peptidyl-proline dioxygenase activity;0.0263857277611802!GO:0030496;midbody;0.0264452901198101!GO:0006378;mRNA polyadenylation;0.0271275671427997!GO:0043433;negative regulation of transcription factor activity;0.0272773763497658!GO:0007040;lysosome organization and biogenesis;0.0276940353144987!GO:0042770;DNA damage response, signal transduction;0.0277532880608639!GO:0016776;phosphotransferase activity, phosphate group as acceptor;0.0279186913539732!GO:0030041;actin filament polymerization;0.0280959705064403!GO:0016791;phosphoric monoester hydrolase activity;0.0281645727030805!GO:0008538;proteasome activator activity;0.0284175826162215!GO:0007242;intracellular signaling cascade;0.028674901729299!GO:0006769;nicotinamide metabolic process;0.0286869421558739!GO:0030833;regulation of actin filament polymerization;0.0287207668059443!GO:0051539;4 iron, 4 sulfur cluster binding;0.0292328731596844!GO:0006739;NADP metabolic process;0.0292445573759619!GO:0030032;lamellipodium biogenesis;0.029291061836711!GO:0045941;positive regulation of transcription;0.0295057255215196!GO:0006904;vesicle docking during exocytosis;0.0296343349453584!GO:0051270;regulation of cell motility;0.0298364843454437!GO:0042158;lipoprotein biosynthetic process;0.0298364843454437!GO:0006506;GPI anchor biosynthetic process;0.0300521195680906!GO:0043492;ATPase activity, coupled to movement of substances;0.0302014072664947!GO:0016311;dephosphorylation;0.0304199297544081!GO:0005876;spindle microtubule;0.0314821557132791!GO:0016860;intramolecular oxidoreductase activity;0.0315264010005666!GO:0000792;heterochromatin;0.0320593165445724!GO:0019222;regulation of metabolic process;0.0321485485721573!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0322378984862826!GO:0009303;rRNA transcription;0.0326490694831731!GO:0012502;induction of programmed cell death;0.0329568599182123!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0330307612190098!GO:0015002;heme-copper terminal oxidase activity;0.0330307612190098!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0330307612190098!GO:0004129;cytochrome-c oxidase activity;0.0330307612190098!GO:0006778;porphyrin metabolic process;0.0332167777329719!GO:0033013;tetrapyrrole metabolic process;0.0332167777329719!GO:0008097;5S rRNA binding;0.0333678139052337!GO:0009889;regulation of biosynthetic process;0.0337306359788966!GO:0008426;protein kinase C inhibitor activity;0.0342189370164815!GO:0043071;positive regulation of non-apoptotic programmed cell death;0.0342189370164815!GO:0005669;transcription factor TFIID complex;0.0342189370164815!GO:0006733;oxidoreduction coenzyme metabolic process;0.0342833124209813!GO:0005083;small GTPase regulator activity;0.0344307000848389!GO:0006376;mRNA splice site selection;0.0344307000848389!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0344307000848389!GO:0007033;vacuole organization and biogenesis;0.0353647472385189!GO:0005784;translocon complex;0.0359639849906091!GO:0051336;regulation of hydrolase activity;0.0360545274925837!GO:0007059;chromosome segregation;0.0360545274925837!GO:0003923;GPI-anchor transamidase activity;0.0362999141129853!GO:0016255;attachment of GPI anchor to protein;0.0362999141129853!GO:0042765;GPI-anchor transamidase complex;0.0362999141129853!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0364321736266386!GO:0016125;sterol metabolic process;0.0367488627161589!GO:0004448;isocitrate dehydrogenase activity;0.0373642803807787!GO:0007050;cell cycle arrest;0.0381879967409165!GO:0008601;protein phosphatase type 2A regulator activity;0.0383662007176114!GO:0031123;RNA 3'-end processing;0.0384796079285459!GO:0033559;unsaturated fatty acid metabolic process;0.0393777217914172!GO:0006636;unsaturated fatty acid biosynthetic process;0.0393777217914172!GO:0045792;negative regulation of cell size;0.0397098335534094!GO:0003756;protein disulfide isomerase activity;0.0406750276026887!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0406750276026887!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.0408065153843474!GO:0031371;ubiquitin conjugating enzyme complex;0.0410437068890636!GO:0006897;endocytosis;0.0416007235793974!GO:0010324;membrane invagination;0.0416007235793974!GO:0008287;protein serine/threonine phosphatase complex;0.0420215953786725!GO:0043241;protein complex disassembly;0.042369591852188!GO:0006749;glutathione metabolic process;0.0426935908763178!GO:0022411;cellular component disassembly;0.0429719307673216!GO:0006505;GPI anchor metabolic process;0.0434180174908375!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0434989119841713!GO:0010257;NADH dehydrogenase complex assembly;0.0434989119841713!GO:0033108;mitochondrial respiratory chain complex assembly;0.0434989119841713!GO:0016407;acetyltransferase activity;0.0437724029529185!GO:0006275;regulation of DNA replication;0.0445487531501481!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0446566054509995!GO:0019798;procollagen-proline dioxygenase activity;0.0446728178506788!GO:0051129;negative regulation of cellular component organization and biogenesis;0.0448945528469444!GO:0042393;histone binding;0.0452399071678253!GO:0019904;protein domain specific binding;0.0455936273286383!GO:0019206;nucleoside kinase activity;0.0455936273286383!GO:0009124;nucleoside monophosphate biosynthetic process;0.0455936273286383!GO:0009123;nucleoside monophosphate metabolic process;0.0455936273286383!GO:0031418;L-ascorbic acid binding;0.0456539104913411!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0457484917557302!GO:0032535;regulation of cellular component size;0.0460075133104144!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0461597202467765!GO:0030308;negative regulation of cell growth;0.0469186641767733!GO:0008243;plasminogen activator activity;0.0471694508576878!GO:0051015;actin filament binding;0.0484099317209362!GO:0000159;protein phosphatase type 2A complex;0.0486352021605516!GO:0017134;fibroblast growth factor binding;0.0491247036777458!GO:0003682;chromatin binding;0.0496734000354237!GO:0005092;GDP-dissociation inhibitor activity;0.0497714586884989!GO:0047485;protein N-terminus binding;0.0499768047337278!GO:0050178;phenylpyruvate tautomerase activity;0.0499768047337278 | |||
|sample_id=11596 | |sample_id=11596 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 99: | ||
|sample_tissue=kidney | |sample_tissue=kidney | ||
|top_motifs=ZEB1:1.72733161405;XCPE1{core}:1.68164436424;TBX4,5:1.51408483205;SNAI1..3:1.49714988834;MYOD1:1.49363176879;VSX1,2:1.3600089248;SP1:1.31253614576;TEF:1.22545702286;ADNP_IRX_SIX_ZHX:1.1979504823;GZF1:1.14755559892;NKX2-3_NKX2-5:1.13178707139;PAX8:1.12459437935;HNF1A:1.05742751465;RXRA_VDR{dimer}:1.05230182476;LMO2:0.949217710351;ALX1:0.920183432967;ONECUT1,2:0.889642023849;FOXQ1:0.859789620587;ESRRA:0.816960938819;ZNF148:0.808874650369;ARID5B:0.75824673182;ZIC1..3:0.748331629458;TEAD1:0.674615135833;STAT5{A,B}:0.648171408839;EBF1:0.639185298338;FOSL2:0.629634111515;SOX2:0.62760663285;NKX2-1,4:0.613304749964;PBX1:0.57623236547;JUN:0.573068010168;NR3C1:0.54202419574;GFI1:0.510549219631;LHX3,4:0.500946977687;POU1F1:0.498138904344;TFCP2:0.488301650543;GFI1B:0.488298808539;EN1,2:0.480483077387;NFY{A,B,C}:0.477627271446;HOX{A5,B5}:0.419289561622;T:0.417829401307;AIRE:0.394359769456;MAZ:0.391392921044;PAX5:0.391095665311;KLF4:0.390443242233;TP53:0.383751768695;POU2F1..3:0.369338173269;NKX3-1:0.352558032919;SPZ1:0.34125663884;CDC5L:0.339163385892;NR1H4:0.328542986857;TBP:0.324301757226;HAND1,2:0.292868142734;CRX:0.290304326792;PDX1:0.284599135777;E2F1..5:0.283722202637;TFAP2{A,C}:0.258592234585;EVI1:0.256452386565;FOS_FOS{B,L1}_JUN{B,D}:0.245714043804;LEF1_TCF7_TCF7L1,2:0.220776430189;SOX17:0.196675579487;TFDP1:0.194990236872;NKX6-1,2:0.192157598729;BACH2:0.179655540525;ZFP161:0.178845899946;RREB1:0.172108567089;ZNF423:0.150560978361;IKZF1:0.147567290674;UFEwm:0.138068011544;ZNF143:0.127869420675;GCM1,2:0.116094113495;ATF2:0.106956812103;NFE2L2:0.0828654988143;PPARG:0.0774037058263;ZBTB6:0.0672692055777;MTF1:0.05838872177;HNF4A_NR2F1,2:0.0424487662487;ALX4:0.0417453377209;NKX3-2:0.024515552145;SRF:0.0238926433137;NFE2:0.0213322843881;HSF1,2:0.0186187311903;TFAP4:0.0165432291322;SREBF1,2:-0.00989995098564;GTF2I:-0.00995935636836;NRF1:-0.0112793296913;GLI1..3:-0.0187418743355;NFATC1..3:-0.0299393243645;bHLH_family:-0.0340738589491;NFKB1_REL_RELA:-0.0402470191694;HIC1:-0.0427481403304;TFAP2B:-0.0502342193772;POU3F1..4:-0.0548107105346;FOXN1:-0.0590346084301;FOX{I1,J2}:-0.0845861021524;EP300:-0.0970350515211;STAT1,3:-0.103926217492;CDX1,2,4:-0.120238205371;MYBL2:-0.132731796177;NFE2L1:-0.135747143485;TAL1_TCF{3,4,12}:-0.140903641896;RFX1:-0.14639587878;POU5F1:-0.154433898788;ELK1,4_GABP{A,B1}:-0.164918607161;RFX2..5_RFXANK_RFXAP:-0.165227226178;FOXO1,3,4:-0.165286929749;TOPORS:-0.167017600839;PRDM1:-0.170004643629;FOX{F1,F2,J1}:-0.174807844699;MTE{core}:-0.175145309359;MYB:-0.175517365066;MEF2{A,B,C,D}:-0.187500772166;RORA:-0.188892241127;GTF2A1,2:-0.190363601868;TLX1..3_NFIC{dimer}:-0.191795784852;ATF4:-0.233066695248;PRRX1,2:-0.236603525;MED-1{core}:-0.237452634175;SOX{8,9,10}:-0.237617978079;REST:-0.243337074793;PATZ1:-0.262838952625;ZNF384:-0.264388105575;NR6A1:-0.264518043653;ETS1,2:-0.275531378123;HLF:-0.279545569081;OCT4_SOX2{dimer}:-0.290035443469;HIF1A:-0.295146413518;PAX1,9:-0.303667964596;EGR1..3:-0.307782513605;PAX6:-0.316589467697;HMGA1,2:-0.320340003138;CUX2:-0.324248150887;CEBPA,B_DDIT3:-0.337233101167;ELF1,2,4:-0.351364895682;ESR1:-0.359991827456;HBP1_HMGB_SSRP1_UBTF:-0.361297923664;IRF7:-0.36148266336;STAT2,4,6:-0.363484715275;ZBTB16:-0.366678862475;FOXD3:-0.381129473211;FOXM1:-0.382776250844;PAX2:-0.384176547328;FOXL1:-0.389822715131;SPI1:-0.400517635461;RXR{A,B,G}:-0.404860820758;IKZF2:-0.416798815659;HOX{A4,D4}:-0.421916259122;AR:-0.42938025075;NKX2-2,8:-0.431089526723;MZF1:-0.433846344895;XBP1:-0.454898403103;ATF6:-0.4638870147;NHLH1,2:-0.478281695876;CREB1:-0.485731658957;MYFfamily:-0.489805836755;RUNX1..3:-0.495506715565;AHR_ARNT_ARNT2:-0.496898503043;PITX1..3:-0.507168997597;NR5A1,2:-0.5268139756;SPIB:-0.5377850112;NANOG:-0.53859822332;FOXP1:-0.555370772121;NFIX:-0.570101826112;BPTF:-0.570505046357;GATA6:-0.574409253099;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.592976325021;YY1:-0.599845283592;HMX1:-0.600249671026;ATF5_CREB3:-0.605287404936;SOX5:-0.637819641386;SMAD1..7,9:-0.643345414528;RBPJ:-0.643841955022;FOXP3:-0.645819545785;HOXA9_MEIS1:-0.6672490486;IRF1,2:-0.667842627106;DBP:-0.721981110803;PAX4:-0.782460487657;MAFB:-0.786017454122;NFIL3:-0.790339335155;HES1:-0.80795333243;FOX{D1,D2}:-0.819315085625;PAX3,7:-0.821955766123;HOX{A6,A7,B6,B7}:-0.852991176336;GATA4:-0.853275986292;TGIF1:-0.85483297336;BREu{core}:-0.898465282864;ZNF238:-0.905676348888;TLX2:-0.930057185282;FOXA2:-0.958059635821;POU6F1:-1.00879524448;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.01768472917;DMAP1_NCOR{1,2}_SMARC:-1.06922972923;NANOG{mouse}:-1.08789491726 | |top_motifs=ZEB1:1.72733161405;XCPE1{core}:1.68164436424;TBX4,5:1.51408483205;SNAI1..3:1.49714988834;MYOD1:1.49363176879;VSX1,2:1.3600089248;SP1:1.31253614576;TEF:1.22545702286;ADNP_IRX_SIX_ZHX:1.1979504823;GZF1:1.14755559892;NKX2-3_NKX2-5:1.13178707139;PAX8:1.12459437935;HNF1A:1.05742751465;RXRA_VDR{dimer}:1.05230182476;LMO2:0.949217710351;ALX1:0.920183432967;ONECUT1,2:0.889642023849;FOXQ1:0.859789620587;ESRRA:0.816960938819;ZNF148:0.808874650369;ARID5B:0.75824673182;ZIC1..3:0.748331629458;TEAD1:0.674615135833;STAT5{A,B}:0.648171408839;EBF1:0.639185298338;FOSL2:0.629634111515;SOX2:0.62760663285;NKX2-1,4:0.613304749964;PBX1:0.57623236547;JUN:0.573068010168;NR3C1:0.54202419574;GFI1:0.510549219631;LHX3,4:0.500946977687;POU1F1:0.498138904344;TFCP2:0.488301650543;GFI1B:0.488298808539;EN1,2:0.480483077387;NFY{A,B,C}:0.477627271446;HOX{A5,B5}:0.419289561622;T:0.417829401307;AIRE:0.394359769456;MAZ:0.391392921044;PAX5:0.391095665311;KLF4:0.390443242233;TP53:0.383751768695;POU2F1..3:0.369338173269;NKX3-1:0.352558032919;SPZ1:0.34125663884;CDC5L:0.339163385892;NR1H4:0.328542986857;TBP:0.324301757226;HAND1,2:0.292868142734;CRX:0.290304326792;PDX1:0.284599135777;E2F1..5:0.283722202637;TFAP2{A,C}:0.258592234585;EVI1:0.256452386565;FOS_FOS{B,L1}_JUN{B,D}:0.245714043804;LEF1_TCF7_TCF7L1,2:0.220776430189;SOX17:0.196675579487;TFDP1:0.194990236872;NKX6-1,2:0.192157598729;BACH2:0.179655540525;ZFP161:0.178845899946;RREB1:0.172108567089;ZNF423:0.150560978361;IKZF1:0.147567290674;UFEwm:0.138068011544;ZNF143:0.127869420675;GCM1,2:0.116094113495;ATF2:0.106956812103;NFE2L2:0.0828654988143;PPARG:0.0774037058263;ZBTB6:0.0672692055777;MTF1:0.05838872177;HNF4A_NR2F1,2:0.0424487662487;ALX4:0.0417453377209;NKX3-2:0.024515552145;SRF:0.0238926433137;NFE2:0.0213322843881;HSF1,2:0.0186187311903;TFAP4:0.0165432291322;SREBF1,2:-0.00989995098564;GTF2I:-0.00995935636836;NRF1:-0.0112793296913;GLI1..3:-0.0187418743355;NFATC1..3:-0.0299393243645;bHLH_family:-0.0340738589491;NFKB1_REL_RELA:-0.0402470191694;HIC1:-0.0427481403304;TFAP2B:-0.0502342193772;POU3F1..4:-0.0548107105346;FOXN1:-0.0590346084301;FOX{I1,J2}:-0.0845861021524;EP300:-0.0970350515211;STAT1,3:-0.103926217492;CDX1,2,4:-0.120238205371;MYBL2:-0.132731796177;NFE2L1:-0.135747143485;TAL1_TCF{3,4,12}:-0.140903641896;RFX1:-0.14639587878;POU5F1:-0.154433898788;ELK1,4_GABP{A,B1}:-0.164918607161;RFX2..5_RFXANK_RFXAP:-0.165227226178;FOXO1,3,4:-0.165286929749;TOPORS:-0.167017600839;PRDM1:-0.170004643629;FOX{F1,F2,J1}:-0.174807844699;MTE{core}:-0.175145309359;MYB:-0.175517365066;MEF2{A,B,C,D}:-0.187500772166;RORA:-0.188892241127;GTF2A1,2:-0.190363601868;TLX1..3_NFIC{dimer}:-0.191795784852;ATF4:-0.233066695248;PRRX1,2:-0.236603525;MED-1{core}:-0.237452634175;SOX{8,9,10}:-0.237617978079;REST:-0.243337074793;PATZ1:-0.262838952625;ZNF384:-0.264388105575;NR6A1:-0.264518043653;ETS1,2:-0.275531378123;HLF:-0.279545569081;OCT4_SOX2{dimer}:-0.290035443469;HIF1A:-0.295146413518;PAX1,9:-0.303667964596;EGR1..3:-0.307782513605;PAX6:-0.316589467697;HMGA1,2:-0.320340003138;CUX2:-0.324248150887;CEBPA,B_DDIT3:-0.337233101167;ELF1,2,4:-0.351364895682;ESR1:-0.359991827456;HBP1_HMGB_SSRP1_UBTF:-0.361297923664;IRF7:-0.36148266336;STAT2,4,6:-0.363484715275;ZBTB16:-0.366678862475;FOXD3:-0.381129473211;FOXM1:-0.382776250844;PAX2:-0.384176547328;FOXL1:-0.389822715131;SPI1:-0.400517635461;RXR{A,B,G}:-0.404860820758;IKZF2:-0.416798815659;HOX{A4,D4}:-0.421916259122;AR:-0.42938025075;NKX2-2,8:-0.431089526723;MZF1:-0.433846344895;XBP1:-0.454898403103;ATF6:-0.4638870147;NHLH1,2:-0.478281695876;CREB1:-0.485731658957;MYFfamily:-0.489805836755;RUNX1..3:-0.495506715565;AHR_ARNT_ARNT2:-0.496898503043;PITX1..3:-0.507168997597;NR5A1,2:-0.5268139756;SPIB:-0.5377850112;NANOG:-0.53859822332;FOXP1:-0.555370772121;NFIX:-0.570101826112;BPTF:-0.570505046357;GATA6:-0.574409253099;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.592976325021;YY1:-0.599845283592;HMX1:-0.600249671026;ATF5_CREB3:-0.605287404936;SOX5:-0.637819641386;SMAD1..7,9:-0.643345414528;RBPJ:-0.643841955022;FOXP3:-0.645819545785;HOXA9_MEIS1:-0.6672490486;IRF1,2:-0.667842627106;DBP:-0.721981110803;PAX4:-0.782460487657;MAFB:-0.786017454122;NFIL3:-0.790339335155;HES1:-0.80795333243;FOX{D1,D2}:-0.819315085625;PAX3,7:-0.821955766123;HOX{A6,A7,B6,B7}:-0.852991176336;GATA4:-0.853275986292;TGIF1:-0.85483297336;BREu{core}:-0.898465282864;ZNF238:-0.905676348888;TLX2:-0.930057185282;FOXA2:-0.958059635821;POU6F1:-1.00879524448;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.01768472917;DMAP1_NCOR{1,2}_SMARC:-1.06922972923;NANOG{mouse}:-1.08789491726 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11596-120H3;search_select_hide=table117:FF:11596-120H3 | |||
}} | }} | ||
Latest revision as of 18:11, 4 June 2020
| Name: | Renal Cortical Epithelial Cells, donor2 |
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| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12728 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12728
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12728
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.203 |
| 10 | 10 | 0.0375 |
| 100 | 100 | 0.969 |
| 101 | 101 | 0.0971 |
| 102 | 102 | 0.318 |
| 103 | 103 | 0.994 |
| 104 | 104 | 0.986 |
| 105 | 105 | 0.558 |
| 106 | 106 | 0.654 |
| 107 | 107 | 0.155 |
| 108 | 108 | 0.503 |
| 109 | 109 | 0.615 |
| 11 | 11 | 0.399 |
| 110 | 110 | 0.376 |
| 111 | 111 | 0.529 |
| 112 | 112 | 0.419 |
| 113 | 113 | 0.882 |
| 114 | 114 | 0.00547 |
| 115 | 115 | 0.389 |
| 116 | 116 | 0.262 |
| 117 | 117 | 0.0752 |
| 118 | 118 | 0.991 |
| 119 | 119 | 0.857 |
| 12 | 12 | 0.314 |
| 120 | 120 | 0.104 |
| 121 | 121 | 0.803 |
| 122 | 122 | 0.273 |
| 123 | 123 | 0.00446 |
| 124 | 124 | 0.0322 |
| 125 | 125 | 0.689 |
| 126 | 126 | 0.361 |
| 127 | 127 | 0.413 |
| 128 | 128 | 0.66 |
| 129 | 129 | 0.0646 |
| 13 | 13 | 0.884 |
| 130 | 130 | 0.395 |
| 131 | 131 | 0.136 |
| 132 | 132 | 0.238 |
| 133 | 133 | 0.148 |
| 134 | 134 | 0.211 |
| 135 | 135 | 0.0746 |
| 136 | 136 | 0.0982 |
| 137 | 137 | 0.076 |
| 138 | 138 | 0.174 |
| 139 | 139 | 0.00109 |
| 14 | 14 | 0.674 |
| 140 | 140 | 0.252 |
| 141 | 141 | 0.687 |
| 142 | 142 | 0.214 |
| 143 | 143 | 0.138 |
| 144 | 144 | 0.274 |
| 145 | 145 | 0.55 |
| 146 | 146 | 0.346 |
| 147 | 147 | 0.574 |
| 148 | 148 | 0.0189 |
| 149 | 149 | 0.739 |
| 15 | 15 | 0.626 |
| 150 | 150 | 0.992 |
| 151 | 151 | 0.847 |
| 152 | 152 | 0.036 |
| 153 | 153 | 0.864 |
| 154 | 154 | 0.315 |
| 155 | 155 | 0.326 |
| 156 | 156 | 0.453 |
| 157 | 157 | 0.898 |
| 158 | 158 | 0.519 |
| 159 | 159 | 0.989 |
| 16 | 16 | 0.743 |
| 160 | 160 | 0.958 |
| 161 | 161 | 0.904 |
| 162 | 162 | 0.544 |
| 163 | 163 | 0.137 |
| 164 | 164 | 0.472 |
| 165 | 165 | 0.538 |
| 166 | 166 | 0.748 |
| 167 | 167 | 0.359 |
| 168 | 168 | 0.622 |
| 169 | 169 | 0.867 |
| 17 | 17 | 0.864 |
| 18 | 18 | 0.448 |
| 19 | 19 | 0.247 |
| 2 | 2 | 0.754 |
| 20 | 20 | 0.837 |
| 21 | 21 | 0.773 |
| 22 | 22 | 0.889 |
| 23 | 23 | 0.57 |
| 24 | 24 | 0.39 |
| 25 | 25 | 0.707 |
| 26 | 26 | 0.34 |
| 27 | 27 | 0.583 |
| 28 | 28 | 0.903 |
| 29 | 29 | 0.898 |
| 3 | 3 | 0.198 |
| 30 | 30 | 0.0259 |
| 31 | 31 | 0.962 |
| 32 | 32 | 0.0128 |
| 33 | 33 | 0.0971 |
| 34 | 34 | 0.793 |
| 35 | 35 | 8.12367e-4 |
| 36 | 36 | 0.477 |
| 37 | 37 | 0.949 |
| 38 | 38 | 0.836 |
| 39 | 39 | 0.308 |
| 4 | 4 | 0.983 |
| 40 | 40 | 0.0777 |
| 41 | 41 | 0.133 |
| 42 | 42 | 0.29 |
| 43 | 43 | 0.213 |
| 44 | 44 | 0.244 |
| 45 | 45 | 0.226 |
| 46 | 46 | 0.348 |
| 47 | 47 | 0.583 |
| 48 | 48 | 0.587 |
| 49 | 49 | 0.0217 |
| 5 | 5 | 0.108 |
| 50 | 50 | 0.269 |
| 51 | 51 | 0.937 |
| 52 | 52 | 0.615 |
| 53 | 53 | 0.181 |
| 54 | 54 | 0.792 |
| 55 | 55 | 0.0617 |
| 56 | 56 | 0.295 |
| 57 | 57 | 0.544 |
| 58 | 58 | 0.229 |
| 59 | 59 | 0.915 |
| 6 | 6 | 0.253 |
| 60 | 60 | 0.774 |
| 61 | 61 | 0.284 |
| 62 | 62 | 0.0639 |
| 63 | 63 | 0.642 |
| 64 | 64 | 0.45 |
| 65 | 65 | 0.932 |
| 66 | 66 | 0.0891 |
| 67 | 67 | 0.695 |
| 68 | 68 | 0.0287 |
| 69 | 69 | 0.298 |
| 7 | 7 | 0.564 |
| 70 | 70 | 0.0381 |
| 71 | 71 | 0.0611 |
| 72 | 72 | 0.833 |
| 73 | 73 | 0.125 |
| 74 | 74 | 0.078 |
| 75 | 75 | 0.476 |
| 76 | 76 | 0.0868 |
| 77 | 77 | 0.0575 |
| 78 | 78 | 0.307 |
| 79 | 79 | 0.323 |
| 8 | 8 | 0.349 |
| 80 | 80 | 0.151 |
| 81 | 81 | 0.0247 |
| 82 | 82 | 0.0711 |
| 83 | 83 | 0.0193 |
| 84 | 84 | 0.761 |
| 85 | 85 | 0.0535 |
| 86 | 86 | 0.24 |
| 87 | 87 | 0.167 |
| 88 | 88 | 0.878 |
| 89 | 89 | 0.38 |
| 9 | 9 | 0.496 |
| 90 | 90 | 0.83 |
| 91 | 91 | 0.339 |
| 92 | 92 | 0.555 |
| 93 | 93 | 0.326 |
| 94 | 94 | 0.173 |
| 95 | 95 | 0.0245 |
| 96 | 96 | 0.43 |
| 97 | 97 | 0.888 |
| 98 | 98 | 0.0363 |
| 99 | 99 | 0.00796 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12728
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000152 human renal cortical epithelial cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
1000497 (kidney cell)
0002518 (kidney epithelial cell)
0002681 (kidney cortical cell)
1000449 (epithelial cell of nephron)
1000507 (kidney tubule cell)
0002584 (renal cortical epithelial cell)
1000494 (nephron tubule epithelial cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002113 (kidney)
0002100 (trunk)
0000483 (epithelium)
0001851 (cortex)
0000479 (tissue)
0000064 (organ part)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0006555 (excretory tube)
0006554 (urinary system structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0003103 (compound organ)
0009569 (subdivision of trunk)
0004211 (nephron epithelium)
0009773 (renal tubule)
0000489 (cavitated compound organ)
0000353 (parenchyma)
0005177 (trunk region element)
0005172 (abdomen element)
0001231 (nephron tubule)
0004819 (kidney epithelium)
0005173 (abdominal segment element)
0004810 (nephron tubule epithelium)
0001285 (nephron)
0001225 (cortex of kidney)
0011143 (upper urinary tract)
0001008 (renal system)
0002417 (abdominal segment of trunk)
0008987 (renal parenchyma)
0007684 (uriniferous tubule)
0000916 (abdomen)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000151 (human renal epithelial cell sample)
0000152 (human renal cortical epithelial cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA
