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(Created page with "{{f5samples |id=FF:10277-104E7 |name=optic nerve, donor1 |sample_id=10277 |rna_tube_id= |rna_box=104 |rna_position=E7 |sample_cell_lot= |sample_cell_catalog= |sample_...")
 
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{{f5samples
{{f5samples
|id=FF:10277-104E7
|DRA_sample_Accession=CAGE@SAMD00005088
|name=optic nerve, donor1
|accession_numbers=CAGE;DRX008696;DRR009568;DRZ000993;DRZ002378;DRZ012343;DRZ013728
|sample_id=10277
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000941,UBERON:0003714,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0005162,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0001785,UBERON:0002464,UBERON:0004904,UBERON:0000122,UBERON:0001021,UBERON:0004732,UBERON:0001032,UBERON:0010317,UBERON:0000010,UBERON:0001016,UBERON:0002104,UBERON:0004456
|rna_tube_id=
|rna_box=104
|rna_position=E7
|sample_cell_lot=
|sample_cell_catalog=
|sample_company=
|rna_lot_number=1-On
|rna_catalog_number=
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=
|sample_tissue=optic nerve
|sample_donor(cell lot)=
|sample_sex=male
|sample_age=
|sample_ethnicity=
|rna_rin=5.10000
|rna_od260/230=1.77000
|rna_od260/280=2.04000
|sample_cell_type=CELL MIXTURE - tissue sample
|sample_cell_line=
|sample_collaboration=Alessandro Bonetti
|sample_experimental_condition=
|sample_disease=
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_weight_ug=5.43132
|rna_concentration=
|sample_note=
|profile_hcage=CNhs13449,LSID1024,,SEQUENCING QUEUE
|profile_cagescan=,,,
|profile_srnaseq=,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=
|ancestors_in_cell_lineage_facet=
|ancestors_in_anatomy_facet=UBERON:0000010,UBERON:0000061,UBERON:0000062,UBERON:0000063,UBERON:0000064,UBERON:0000073,UBERON:0000122,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000479,UBERON:0000480,UBERON:0000922,UBERON:0000923,UBERON:0000924,UBERON:0000941,UBERON:0001016,UBERON:0001021,UBERON:0001032,UBERON:0001062,UBERON:0001785,UBERON:0002050,UBERON:0002104,UBERON:0002464,UBERON:0002532,UBERON:0003714,UBERON:0004121,UBERON:0004456,UBERON:0004732,UBERON:0004904,UBERON:0005162,UBERON:0005423,UBERON:0007023
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000998,FF:0000004,FF:0011166
 
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|expression_enrichment_score=chr7:100065686..100065701,-!p2@TSC22D4!3.21!1607.58!TSC22D4;;chr21:34442439..34442455,+!p1@OLIG1!3.11!1273.50!OLIG1;;chr10:48355030..48355090,+!p1@ZNF488!2.52!418.31!ZNF488;;chr11:61520075..61520136,+!p1@C11orf9!2.45!579.64!C11orf9;;chr22:38380543..38380569,-!p1@SOX10!2.39!246.99!SOX10;;chr21:34442540..34442560,+!p2@OLIG1!2.31!202.73!OLIG1;;chr8:53322304..53322340,-!p1@ST18!2.24!171.32!ST18;;chr2:145277882..145277967,-!p3@ZEB2!2.21!271.26!ZEB2;;chr21:34398234..34398250,+!p1@OLIG2!2.15!141.34!OLIG2;;chr10:134599649..134599653,-!p1@NKX6-2!2.14!135.63!NKX6-2;;chr1:214161272..214161322,+!p1@PROX1!1.94!119.93!PROX1;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.94!85.66!POU3F3;;chr8:53322347..53322378,-!p2@ST18!1.88!75.67!ST18;;chr19:46801639..46801699,+!p1@HIF3A!1.84!68.53!HIF3A;;chr16:1031762..1031781,+!p1@SOX8!1.83!67.10!SOX8;;chr19:30863271..30863338,+!p1@ZNF536!1.80!62.82!ZNF536;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.79!59.96!PEG3;;chr15:80696703..80696754,+!p1@ARNT2!1.73!69.96!ARNT2;;chr4:81118647..81118666,+!p1@PRDM8!1.70!64.25!PRDM8;;chr10:48359344..48359376,+!p2@ZNF488!1.68!47.11!ZNF488;;chr10:111987079..111987115,+!p3@MXI1!1.67!61.39!MXI1;;chr12:26277956..26277980,-!p1@BHLHE41!1.60!134.20!BHLHE41;;chr12:26277817..26277863,-!p2@BHLHE41!1.60!51.40!BHLHE41;;chr11:113930425..113930471,+!p1@ZBTB16!1.58!52.82!ZBTB16;;chr19:13135386..13135435,+!p4@NFIX!1.58!37.12!NFIX;;chr22:41763452..41763466,+!p2@TEF!1.56!35.69!TEF;;chr9:114287433..114287513,+!p1@ZNF483!1.55!87.09!ZNF483;;chr16:51185172..51185197,-!p1@SALL1!1.55!34.26!SALL1;;chr7:28725740..28725778,+!p1@CREB5!1.47!242.71!CREB5;;chr19:9879350..9879419,-!p2@ZNF846!1.45!57.11!ZNF846;;chr20:21494654..21494678,-!p2@NKX2-2!1.45!27.13!NKX2-2;;chr2:145275982..145276003,-!p7@ZEB2!1.45!27.13!ZEB2;;chr4:26344778..26344807,+!p8@RBPJ!1.45!27.13!RBPJ;;chr19:13135582..13135600,+!p3@NFIX!1.45!27.13!NFIX;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.43!25.70!POU3F3;;chr7:63505799..63505904,+!p1@ZNF727!1.43!25.70!ZNF727;;chr14:33408072..33408114,+!p2@NPAS3!1.42!29.98!NPAS3;;chr4:26344754..26344772,+!p10@RBPJ!1.40!24.27!RBPJ;;chr7:86781858..86781879,+!p3@DMTF1!1.37!35.69!DMTF1;;chr20:21494684..21494708,-!p1@NKX2-2!1.35!21.42!NKX2-2;;chr20:3388541..3388575,-!p2@C20orf194!1.34!79.95!C20orf194;;chr11:113930291..113930339,+!p2@ZBTB16!1.33!32.84!ZBTB16;;chr12:26277929..26277955,-!p3@BHLHE41!1.33!28.55!BHLHE41;;chr3:147111198..147111225,+!p4@ZIC1!1.32!19.99!ZIC1;;chr3:147127142..147127168,+!p1@ZIC1!1.32!19.99!ZIC1;;chrY:21906594..21906622,-!p1@KDM5D!1.32!19.99!KDM5D;;chr2:145277640..145277771,-!p1@ZEB2!1.31!254.13!ZEB2;;chr17:47439437..47439533,-!p1@ZNF652!1.31!152.76!ZNF652;;chr19:21512115..21512135,-!p3@ZNF708!1.29!37.12!ZNF708;;chr2:177053386..177053402,+!p1@HOXD1!1.29!18.56!HOXD1;;chr1:40105299..40105326,-!p1@HEYL!1.29!18.56!HEYL;;chr17:53342311..53342400,+!p1@HLF!1.27!19.99!HLF;;chr20:62680984..62680999,-!p1@SOX18!1.26!22.84!SOX18;;chr9:1050331..1050363,+!p1@DMRT2!1.26!17.13!DMRT2;;chr7:28448965..28448994,+!p2@CREB5!1.25!58.54!CREB5;;chrX:101186981..101187030,-!p1@ZMAT1!1.25!54.25!ZMAT1;;chr1:8877692..8877732,-!p1@RERE!1.23!125.64!RERE;;chr21:34442584..34442587,+!p3@OLIG1!1.22!15.70!OLIG1;;chr16:51185318..51185348,-!p2@SALL1!1.22!15.70!SALL1;;chr6:41701581..41701613,-!p2@TFEB!1.22!15.70!TFEB;;chr12:103351444..103351461,+!p1@ASCL1!1.22!15.70!ASCL1;;chr2:239148671..239148686,-!p1@HES6!1.20!54.25!HES6;;chr3:52001426..52001447,-!p3@PCBP4!1.20!41.40!PCBP4;;chr3:126076242..126076257,-!p1@KLF15!1.20!18.56!KLF15;;chrX:107019163..107019179,-!p7@TSC22D3!1.20!17.13!TSC22D3;;chr6:126070769..126070801,+!p1@HEY2!1.20!17.13!HEY2;;chr12:125003087..125003141,-!p4@NCOR2!1.19!18.56!NCOR2;;chr7:99613250..99613264,+!p2@ZKSCAN1!1.18!41.40!ZKSCAN1;;chr11:113930401..113930422,+!p3@ZBTB16!1.18!14.28!ZBTB16;;chr22:21771656..21771662,+!p1@HIC2!1.18!14.28!HIC2;;chr2:105470714..105470723,+!p@chr2:105470714..105470723,+!1.18!14.28!POU3F3;;chr3:52001396..52001425,-!p4@PCBP4!1.17!24.27!PCBP4;;chr6:126112074..126112144,+!p1@NCOA7!1.14!168.47!NCOA7;;chr2:214016314..214016343,-!p2@IKZF2!1.14!21.42!IKZF2;;chr11:66188503..66188511,+!p1@NPAS4!1.14!12.85!NPAS4;;chr3:52001448..52001478,-!p2@PCBP4!1.11!164.18!PCBP4;;chr7:86781916..86781963,+!p2@DMTF1!1.11!51.40!DMTF1;;chr10:64134120..64134183,+!p1@ZNF365!1.11!14.28!ZNF365;;chr14:73360799..73360817,-!p1@DPF3!1.10!39.98!DPF3;;chr18:56530692..56530723,+!p2@ZNF532!1.10!27.13!ZNF532;;chr1:61547894..61547968,+!p2@NFIA!1.09!32.84!NFIA;;chr1:214161358..214161377,+!p3@PROX1!1.09!11.42!PROX1;;chr21:39870339..39870443,-!p1@ERG!1.09!11.42!ERG;;chr18:76739816..76739822,+!p1@SALL3!1.09!11.42!SALL3;;chr6:41701557..41701578,-!p3@TFEB!1.09!11.42!TFEB;;chr2:16080659..16080685,+!p1@MYCN!1.09!11.42!MYCN;;chr3:147127177..147127194,+!p2@ZIC1!1.09!11.42!ZIC1;;chr19:53636125..53636178,-!p1@ZNF415!1.08!31.41!ZNF415;;chr3:169381420..169381535,-!p1@MECOM!1.08!12.85!MECOM;;chr19:21512144..21512191,-!p2@ZNF708!1.07!49.97!ZNF708;;ch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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000122;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000966;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000970;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001016;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001781
|ffid_belonging_in_development=UBERON:0002532,UBERON:0006601,UBERON:0003056,UBERON:0005425,UBERON:0010316
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 67: Line 41:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/optic%2520nerve%252c%2520donor1.CNhs13449.10277-104E7.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/optic%2520nerve%252c%2520donor1.CNhs13449.10277-104E7.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/optic%2520nerve%252c%2520donor1.CNhs13449.10277-104E7.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/optic%2520nerve%252c%2520donor1.CNhs13449.10277-104E7.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/optic%2520nerve%252c%2520donor1.CNhs13449.10277-104E7.hg38.nobarcode.ctss.bed.gz
|id=FF:10277-104E7
|is_a=EFO:0002091;;FF:0011166
|is_obsolete=
|library_id=CNhs13449
|library_id_phase_based=2:CNhs13449
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10277
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10277
|name=optic nerve, donor1
|namespace=
|part_of=
|profile_cagescan=,,,
|profile_hcage=CNhs13449,LSID1024,release012,COMPLETED
|profile_rnaseq=
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|rna_box=104
|rna_catalog_number=
|rna_concentration=0.20116
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_lot_number=1-On
|rna_od260/230=1.77
|rna_od260/280=2.04
|rna_position=E7
|rna_rin=5.1
|rna_sample_type=total RNA
|rna_tube_id=1.04E+09
|rna_weight_ug=5.43132
|sample_age=
|sample_category=tissues
|sample_cell_catalog=
|sample_cell_line=
|sample_cell_lot=
|sample_cell_type=CELL MIXTURE - tissue sample
|sample_collaboration=Alessandro Bonetti
|sample_company=
|sample_description=
|sample_dev_stage=
|sample_disease=
|sample_donor(cell lot)=
|sample_ethnicity=
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.23525702361377e-247!GO:0005737;cytoplasm;9.61403117162617e-150!GO:0043226;organelle;9.62245446870605e-123!GO:0043229;intracellular organelle;2.14269601345118e-122!GO:0043227;membrane-bound organelle;1.89049576482255e-111!GO:0043231;intracellular membrane-bound organelle;1.89049576482255e-111!GO:0044444;cytoplasmic part;1.82986684471535e-97!GO:0044422;organelle part;1.16056209960431e-77!GO:0044446;intracellular organelle part;9.06821451677562e-77!GO:0005515;protein binding;4.82065747132646e-65!GO:0032991;macromolecular complex;8.89153906466344e-55!GO:0003723;RNA binding;5.37979476212152e-43!GO:0016043;cellular component organization and biogenesis;2.37380183264436e-42!GO:0044238;primary metabolic process;6.27541021646376e-42!GO:0030529;ribonucleoprotein complex;1.76112843905882e-40!GO:0044237;cellular metabolic process;2.23473833767443e-40!GO:0033036;macromolecule localization;4.34329931000175e-40!GO:0015031;protein transport;2.04386077977701e-39!GO:0031090;organelle membrane;9.07363071388167e-39!GO:0005739;mitochondrion;1.55545265467698e-37!GO:0043170;macromolecule metabolic process;2.64571408865796e-37!GO:0043233;organelle lumen;1.11954935595065e-36!GO:0031974;membrane-enclosed lumen;1.11954935595065e-36!GO:0044428;nuclear part;1.35485918650986e-36!GO:0008104;protein localization;1.37587977996019e-36!GO:0045184;establishment of protein localization;9.10380208193932e-36!GO:0005634;nucleus;9.10380208193932e-36!GO:0046907;intracellular transport;7.93444140415874e-31!GO:0043234;protein complex;2.08209325648566e-29!GO:0019538;protein metabolic process;2.59559929161331e-29!GO:0016071;mRNA metabolic process;2.70931539573735e-27!GO:0031975;envelope;4.5510395039747e-27!GO:0031967;organelle envelope;8.18185046776057e-27!GO:0044429;mitochondrial part;8.91368024973995e-27!GO:0006396;RNA processing;1.3509425031228e-26!GO:0044260;cellular macromolecule metabolic process;4.03905074953091e-26!GO:0044267;cellular protein metabolic process;2.27964792980974e-25!GO:0006886;intracellular protein transport;3.51928092975628e-24!GO:0008380;RNA splicing;2.00217403188814e-23!GO:0043283;biopolymer metabolic process;5.57752466105794e-23!GO:0005829;cytosol;6.04148607666719e-23!GO:0031981;nuclear lumen;9.36286095005031e-22!GO:0006996;organelle organization and biogenesis;1.12575468252822e-21!GO:0006397;mRNA processing;1.24053734588955e-21!GO:0051649;establishment of cellular localization;8.51447529182014e-21!GO:0051641;cellular localization;9.69199933799336e-21!GO:0005840;ribosome;1.74112671759424e-19!GO:0065003;macromolecular complex assembly;2.24153338053894e-18!GO:0009058;biosynthetic process;2.63029373905523e-18!GO:0005740;mitochondrial envelope;4.08351521588048e-18!GO:0006412;translation;7.25817617544336e-18!GO:0016192;vesicle-mediated transport;1.02126149798931e-17!GO:0031966;mitochondrial membrane;2.56290132336532e-17!GO:0019866;organelle inner membrane;2.99153676922907e-17!GO:0010467;gene expression;4.6771798048962e-17!GO:0022607;cellular component assembly;4.97167437364511e-17!GO:0005794;Golgi apparatus;8.61678116944397e-17!GO:0012505;endomembrane system;1.07188829591478e-16!GO:0005681;spliceosome;2.75712978142278e-16!GO:0006119;oxidative phosphorylation;3.1242046952375e-16!GO:0033279;ribosomal subunit;8.24298318612509e-16!GO:0003735;structural constituent of ribosome;9.36696767283664e-16!GO:0000166;nucleotide binding;1.03665186404696e-15!GO:0005743;mitochondrial inner membrane;1.26543304581827e-15!GO:0006512;ubiquitin cycle;2.93502576068149e-15!GO:0009059;macromolecule biosynthetic process;4.26187986814622e-15!GO:0005654;nucleoplasm;8.18136042354712e-15!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.44624927877834e-14!GO:0016874;ligase activity;1.56933008264136e-14!GO:0016817;hydrolase activity, acting on acid anhydrides;1.62481753380628e-14!GO:0016462;pyrophosphatase activity;1.73366697446639e-14!GO:0044249;cellular biosynthetic process;2.07798635968898e-14!GO:0043228;non-membrane-bound organelle;2.1224265232026e-14!GO:0043232;intracellular non-membrane-bound organelle;2.1224265232026e-14!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.14967980211219e-14!GO:0005830;cytosolic ribosome (sensu Eukaryota);5.07234825354253e-14!GO:0044451;nucleoplasm part;1.11323023980001e-13!GO:0051603;proteolysis involved in cellular protein catabolic process;1.13888935675933e-13!GO:0044257;cellular protein catabolic process;1.33047770924225e-13!GO:0017111;nucleoside-triphosphatase activity;1.45276656226273e-13!GO:0019941;modification-dependent protein catabolic process;1.91426536541079e-13!GO:0043632;modification-dependent macromolecule catabolic process;1.91426536541079e-13!GO:0006511;ubiquitin-dependent protein catabolic process;1.93415543980081e-13!GO:0044455;mitochondrial membrane part;3.73486903735376e-13!GO:0043412;biopolymer modification;3.78940682985954e-13!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;4.08145563719505e-13!GO:0005783;endoplasmic reticulum;4.8768546485902e-13!GO:0022618;protein-RNA complex assembly;1.63266446635403e-12!GO:0005746;mitochondrial respiratory chain;2.44139324093654e-12!GO:0044265;cellular macromolecule catabolic process;2.44139324093654e-12!GO:0006464;protein modification process;3.56219639692545e-12!GO:0050136;NADH dehydrogenase (quinone) activity;3.76261581836567e-12!GO:0003954;NADH dehydrogenase activity;3.76261581836567e-12!GO:0008137;NADH dehydrogenase (ubiquinone) activity;3.76261581836567e-12!GO:0043285;biopolymer catabolic process;6.44262073354677e-12!GO:0044445;cytosolic part;8.22850050777412e-12!GO:0008092;cytoskeletal protein binding;1.39048803838016e-11!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.6408170088116e-11!GO:0048193;Golgi vesicle transport;2.30118688929976e-11!GO:0043687;post-translational protein modification;3.1485547881582e-11!GO:0006457;protein folding;3.21063766410238e-11!GO:0006605;protein targeting;3.39979856571667e-11!GO:0008134;transcription factor binding;3.78923172735067e-11!GO:0031982;vesicle;6.6191466765356e-11!GO:0031980;mitochondrial lumen;6.6191466765356e-11!GO:0005759;mitochondrial matrix;6.6191466765356e-11!GO:0008135;translation factor activity, nucleic acid binding;8.58978967074612e-11!GO:0048770;pigment granule;8.64161691192183e-11!GO:0042470;melanosome;8.64161691192183e-11!GO:0030163;protein catabolic process;1.16920566884388e-10!GO:0030964;NADH dehydrogenase complex (quinone);1.21831096313177e-10!GO:0045271;respiratory chain complex I;1.21831096313177e-10!GO:0005747;mitochondrial respiratory chain complex I;1.21831096313177e-10!GO:0031410;cytoplasmic vesicle;1.71699816855294e-10!GO:0032553;ribonucleotide binding;1.72854679274615e-10!GO:0032555;purine ribonucleotide binding;1.72854679274615e-10!GO:0008565;protein transporter activity;1.74827591846665e-10!GO:0017076;purine nucleotide binding;1.90066886958425e-10!GO:0042775;organelle ATP synthesis coupled electron transport;2.51625725479959e-10!GO:0042773;ATP synthesis coupled electron transport;2.51625725479959e-10!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;3.83147919185437e-10!GO:0005768;endosome;5.00523579602892e-10!GO:0044248;cellular catabolic process;9.54927724359699e-10!GO:0016604;nuclear body;1.21169045448916e-09!GO:0031988;membrane-bound vesicle;1.56162856079411e-09!GO:0009057;macromolecule catabolic process;2.03045796937926e-09!GO:0005635;nuclear envelope;2.56451648001717e-09!GO:0051082;unfolded protein binding;3.05837079719358e-09!GO:0006413;translational initiation;3.69968052360463e-09!GO:0016023;cytoplasmic membrane-bound vesicle;4.0364973437816e-09!GO:0044432;endoplasmic reticulum part;4.54969705720419e-09!GO:0016607;nuclear speck;5.58423480310547e-09!GO:0031965;nuclear membrane;5.65124214956991e-09!GO:0016070;RNA metabolic process;6.52826975066146e-09!GO:0003743;translation initiation factor activity;6.72570547334043e-09!GO:0008639;small protein conjugating enzyme activity;7.70267909951178e-09!GO:0003676;nucleic acid binding;1.02711122606892e-08!GO:0000502;proteasome complex (sensu Eukaryota);1.38907349897584e-08!GO:0004842;ubiquitin-protein ligase activity;1.51021695281854e-08!GO:0019787;small conjugating protein ligase activity;1.57312050740184e-08!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.71471618407678e-08!GO:0030036;actin cytoskeleton organization and biogenesis;1.7951598771284e-08!GO:0016044;membrane organization and biogenesis;1.91944145643373e-08!GO:0015935;small ribosomal subunit;2.26618929973629e-08!GO:0007010;cytoskeleton organization and biogenesis;2.58633907394209e-08!GO:0048523;negative regulation of cellular process;2.96188456711086e-08!GO:0015934;large ribosomal subunit;3.14717942648784e-08!GO:0006446;regulation of translational initiation;3.82715495479689e-08!GO:0000398;nuclear mRNA splicing, via spliceosome;4.21933906541694e-08!GO:0000375;RNA splicing, via transesterification reactions;4.21933906541694e-08!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;4.21933906541694e-08!GO:0044431;Golgi apparatus part;4.44972469146152e-08!GO:0005083;small GTPase regulator activity;5.50782058061983e-08!GO:0006913;nucleocytoplasmic transport;6.93980230930161e-08!GO:0030695;GTPase regulator activity;8.09438435779189e-08!GO:0051169;nuclear transport;1.01211794381357e-07!GO:0015631;tubulin binding;1.06969690311868e-07!GO:0016881;acid-amino acid ligase activity;1.33018960813553e-07!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.43059811775083e-07!GO:0030029;actin filament-based process;1.63860240680763e-07!GO:0016887;ATPase activity;1.69323147530402e-07!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.77746964518642e-07!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.49446980545792e-07!GO:0031252;leading edge;2.63755944205573e-07!GO:0006793;phosphorus metabolic process;2.79462910045514e-07!GO:0006796;phosphate metabolic process;2.79462910045514e-07!GO:0005730;nucleolus;2.85291487990031e-07!GO:0044453;nuclear membrane part;3.04099501326172e-07!GO:0019899;enzyme binding;3.27230592126534e-07!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;3.42141027793772e-07!GO:0042623;ATPase activity, coupled;4.00917914607202e-07!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);4.15339309117048e-07!GO:0006461;protein complex assembly;4.32852149135661e-07!GO:0005789;endoplasmic reticulum membrane;4.85851517864005e-07!GO:0032559;adenyl ribonucleotide binding;5.15210385353358e-07!GO:0007264;small GTPase mediated signal transduction;5.65937825152127e-07!GO:0030554;adenyl nucleotide binding;6.52495023864896e-07!GO:0048519;negative regulation of biological process;7.23263116744997e-07!GO:0005524;ATP binding;9.49862418614894e-07!GO:0006259;DNA metabolic process;9.57175495658829e-07!GO:0017038;protein import;1.19879470010643e-06!GO:0019829;cation-transporting ATPase activity;1.34936799437137e-06!GO:0015630;microtubule cytoskeleton;1.69061841523481e-06!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;2.15438045198968e-06!GO:0003924;GTPase activity;2.23935128241055e-06!GO:0048471;perinuclear region of cytoplasm;2.32194286323705e-06!GO:0005769;early endosome;2.74498829267683e-06!GO:0045786;negative regulation of progression through cell cycle;2.93926795610238e-06!GO:0003712;transcription cofactor activity;3.32458444540412e-06!GO:0005643;nuclear pore;3.45491590861958e-06!GO:0050794;regulation of cellular process;4.28085660451168e-06!GO:0000139;Golgi membrane;5.1138674808439e-06!GO:0044440;endosomal part;5.39447300982149e-06!GO:0010008;endosome membrane;5.39447300982149e-06!GO:0008017;microtubule binding;6.18434536328704e-06!GO:0051186;cofactor metabolic process;6.95463352015457e-06!GO:0006403;RNA localization;9.65619260868931e-06!GO:0016564;transcription repressor activity;1.10892138784328e-05!GO:0003779;actin binding;1.12246767036763e-05!GO:0050657;nucleic acid transport;1.19420836474024e-05!GO:0051236;establishment of RNA localization;1.19420836474024e-05!GO:0050658;RNA transport;1.19420836474024e-05!GO:0050789;regulation of biological process;1.27137858042319e-05!GO:0005770;late endosome;1.47531013810656e-05!GO:0006897;endocytosis;1.53912584887097e-05!GO:0010324;membrane invagination;1.53912584887097e-05!GO:0015986;ATP synthesis coupled proton transport;1.6227276500085e-05!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.6227276500085e-05!GO:0009056;catabolic process;1.79877138244253e-05!GO:0048475;coated membrane;1.87386877326305e-05!GO:0030117;membrane coat;1.87386877326305e-05!GO:0006325;establishment and/or maintenance of chromatin architecture;1.87812179911356e-05!GO:0051246;regulation of protein metabolic process;2.31134758229046e-05!GO:0012501;programmed cell death;2.40176190629074e-05!GO:0016469;proton-transporting two-sector ATPase complex;2.65699463566153e-05!GO:0005525;GTP binding;2.67525401549851e-05!GO:0006915;apoptosis;2.93474932641821e-05!GO:0016568;chromatin modification;2.93474932641821e-05!GO:0006888;ER to Golgi vesicle-mediated transport;3.27749711708059e-05!GO:0008219;cell death;4.20023532209839e-05!GO:0016265;death;4.20023532209839e-05!GO:0009055;electron carrier activity;4.7781926991851e-05!GO:0000151;ubiquitin ligase complex;4.8722109731198e-05!GO:0051128;regulation of cellular component organization and biogenesis;5.35066724027747e-05!GO:0005761;mitochondrial ribosome;5.35566503992752e-05!GO:0000313;organellar ribosome;5.35566503992752e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;5.81710730483171e-05!GO:0030120;vesicle coat;6.22125544149543e-05!GO:0030662;coated vesicle membrane;6.22125544149543e-05!GO:0005096;GTPase activator activity;6.52466494783126e-05!GO:0051170;nuclear import;6.71812353067417e-05!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;6.85715183344523e-05!GO:0015399;primary active transmembrane transporter activity;6.85715183344523e-05!GO:0007265;Ras protein signal transduction;6.86624319938407e-05!GO:0005905;coated pit;7.20714778925817e-05!GO:0006323;DNA packaging;7.47632621730127e-05!GO:0006606;protein import into nucleus;7.73356689030193e-05!GO:0016310;phosphorylation;7.97721184007691e-05!GO:0015078;hydrogen ion transmembrane transporter activity;8.28284123612357e-05!GO:0006163;purine nucleotide metabolic process;8.5439890598948e-05!GO:0032446;protein modification by small protein conjugation;9.17678846311423e-05!GO:0046034;ATP metabolic process;9.39239871279813e-05!GO:0008287;protein serine/threonine phosphatase complex;0.000100771024643002!GO:0006164;purine nucleotide biosynthetic process;0.000107012811463738!GO:0009150;purine ribonucleotide metabolic process;0.000112577623145442!GO:0051028;mRNA transport;0.00011509217489718!GO:0009259;ribonucleotide metabolic process;0.000118249702905203!GO:0005798;Golgi-associated vesicle;0.000122566694492949!GO:0009060;aerobic respiration;0.000129460786964091!GO:0043566;structure-specific DNA binding;0.000129460786964091!GO:0006366;transcription from RNA polymerase II promoter;0.000129460786964091!GO:0009152;purine ribonucleotide biosynthetic process;0.000134544985171963!GO:0007049;cell cycle;0.000147835643281056!GO:0031901;early endosome membrane;0.000152568679690183!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000157108966185919!GO:0008026;ATP-dependent helicase activity;0.000173048725397821!GO:0003714;transcription corepressor activity;0.000177853352517316!GO:0006754;ATP biosynthetic process;0.00017805709597809!GO:0006753;nucleoside phosphate metabolic process;0.00017805709597809!GO:0046930;pore complex;0.000183563209306296!GO:0045259;proton-transporting ATP synthase complex;0.000184406741836439!GO:0016567;protein ubiquitination;0.000213019685665517!GO:0032561;guanyl ribonucleotide binding;0.000226051954685944!GO:0019001;guanyl nucleotide binding;0.000226051954685944!GO:0043492;ATPase activity, coupled to movement of substances;0.000233950481501722!GO:0008047;enzyme activator activity;0.000240733602516403!GO:0008654;phospholipid biosynthetic process;0.000249052671998945!GO:0005099;Ras GTPase activator activity;0.00024971310735994!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.00025476326292407!GO:0009260;ribonucleotide biosynthetic process;0.000263236808464492!GO:0005773;vacuole;0.000274442869185365!GO:0004386;helicase activity;0.000275379433648009!GO:0009199;ribonucleoside triphosphate metabolic process;0.000291802523598262!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000295643251003646!GO:0009892;negative regulation of metabolic process;0.000306659461319452!GO:0005813;centrosome;0.000315380718455811!GO:0009205;purine ribonucleoside triphosphate metabolic process;0.000315380718455811!GO:0009144;purine nucleoside triphosphate metabolic process;0.000315380718455811!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.000351658737228514!GO:0016791;phosphoric monoester hydrolase activity;0.000351658737228514!GO:0009141;nucleoside triphosphate metabolic process;0.000368998849280514!GO:0045333;cellular respiration;0.000392987919331954!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.00048695186917023!GO:0001726;ruffle;0.000491381448635018!GO:0045045;secretory pathway;0.000504976633840384!GO:0005793;ER-Golgi intermediate compartment;0.000522781425770013!GO:0051726;regulation of cell cycle;0.000528579393030609!GO:0000159;protein phosphatase type 2A complex;0.00055431646460491!GO:0005874;microtubule;0.000564421014784608!GO:0004721;phosphoprotein phosphatase activity;0.000590308537552188!GO:0031324;negative regulation of cellular metabolic process;0.000612073432266286!GO:0030027;lamellipodium;0.000630771360382516!GO:0000074;regulation of progression through cell cycle;0.000632443295466116!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000635474489568844!GO:0030133;transport vesicle;0.000647559043249599!GO:0031072;heat shock protein binding;0.000672248353462705!GO:0016197;endosome transport;0.000694888388697319!GO:0009142;nucleoside triphosphate biosynthetic process;0.000704037006877937!GO:0009201;ribonucleoside triphosphate biosynthetic process;0.000704037006877937!GO:0000245;spliceosome assembly;0.00070602335345846!GO:0006402;mRNA catabolic process;0.000707913830459156!GO:0065002;intracellular protein transport across a membrane;0.000746407512216142!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;0.000755583261354291!GO:0009145;purine nucleoside triphosphate biosynthetic process;0.000755583261354291!GO:0043623;cellular protein complex assembly;0.000755583261354291!GO:0051188;cofactor biosynthetic process;0.000883894746692949!GO:0009966;regulation of signal transduction;0.000901153869644383!GO:0005815;microtubule organizing center;0.000904693778050922!GO:0051056;regulation of small GTPase mediated signal transduction;0.000963130406539546!GO:0000323;lytic vacuole;0.0010430287676876!GO:0005764;lysosome;0.0010430287676876!GO:0003724;RNA helicase activity;0.00105125422218566!GO:0008601;protein phosphatase type 2A regulator activity;0.00107200259411202!GO:0008361;regulation of cell size;0.00118183291724956!GO:0016311;dephosphorylation;0.00118978051572209!GO:0006613;cotranslational protein targeting to membrane;0.00119927163051184!GO:0006099;tricarboxylic acid cycle;0.00126533722418817!GO:0046356;acetyl-CoA catabolic process;0.00126533722418817!GO:0051276;chromosome organization and biogenesis;0.00126533722418817!GO:0051087;chaperone binding;0.00130416928645884!GO:0030532;small nuclear ribonucleoprotein complex;0.00144368950829156!GO:0030041;actin filament polymerization;0.00148966074241367!GO:0008154;actin polymerization and/or depolymerization;0.00150393005465963!GO:0016481;negative regulation of transcription;0.00150492382608361!GO:0030867;rough endoplasmic reticulum membrane;0.00160436828512731!GO:0006732;coenzyme metabolic process;0.00167098371820436!GO:0005791;rough endoplasmic reticulum;0.00171293987168723!GO:0006650;glycerophospholipid metabolic process;0.00173278048168377!GO:0042802;identical protein binding;0.00179941758819918!GO:0046467;membrane lipid biosynthetic process;0.00180301303219175!GO:0005100;Rho GTPase activator activity;0.00188675879376439!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00193874187112971!GO:0005839;proteasome core complex (sensu Eukaryota);0.00202989295109652!GO:0005875;microtubule associated complex;0.00211048557822532!GO:0007019;microtubule depolymerization;0.00212457328047082!GO:0019208;phosphatase regulator activity;0.00216041970332331!GO:0043209;myelin sheath;0.00226837349009295!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00238090395499147!GO:0065007;biological regulation;0.00245214470840541!GO:0006916;anti-apoptosis;0.00253195839254627!GO:0016049;cell growth;0.00260667240816974!GO:0000059;protein import into nucleus, docking;0.00260800372388968!GO:0045892;negative regulation of transcription, DNA-dependent;0.00266763460026484!GO:0009117;nucleotide metabolic process;0.00270876510758487!GO:0030118;clathrin coat;0.00281142097732366!GO:0019867;outer membrane;0.0029349470821557!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.00307865761166856!GO:0019783;small conjugating protein-specific protease activity;0.00320492744464675!GO:0030132;clathrin coat of coated pit;0.00320668273070303!GO:0030865;cortical cytoskeleton organization and biogenesis;0.00334799444683965!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.00334799444683965!GO:0004812;aminoacyl-tRNA ligase activity;0.00334799444683965!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.00334799444683965!GO:0043069;negative regulation of programmed cell death;0.00336981776456951!GO:0009109;coenzyme catabolic process;0.00336981776456951!GO:0006084;acetyl-CoA metabolic process;0.00341936039307728!GO:0051187;cofactor catabolic process;0.00356944828589527!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00367404018536427!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00367404018536427!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00367404018536427!GO:0004843;ubiquitin-specific protease activity;0.00372652294665381!GO:0043066;negative regulation of apoptosis;0.00388782161605893!GO:0043087;regulation of GTPase activity;0.00393285105500418!GO:0003697;single-stranded DNA binding;0.00424945721483653!GO:0046578;regulation of Ras protein signal transduction;0.00428563460142658!GO:0006333;chromatin assembly or disassembly;0.00438503347661258!GO:0022890;inorganic cation transmembrane transporter activity;0.00460355781703855!GO:0031902;late endosome membrane;0.00489190169584452!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.00497349912206606!GO:0031968;organelle outer membrane;0.00497349912206606!GO:0031111;negative regulation of microtubule polymerization or depolymerization;0.00498462110954745!GO:0004221;ubiquitin thiolesterase activity;0.00511631228276101!GO:0003690;double-stranded DNA binding;0.00519843083956697!GO:0005741;mitochondrial outer membrane;0.00529193987164266!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.00533824915847186!GO:0006470;protein amino acid dephosphorylation;0.0053578789710048!GO:0008286;insulin receptor signaling pathway;0.0053578789710048!GO:0001666;response to hypoxia;0.00553983499808435!GO:0048487;beta-tubulin binding;0.00565292277511873!GO:0042254;ribosome biogenesis and assembly;0.00582149860621359!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00583163463479679!GO:0045187;regulation of circadian sleep/wake cycle, sleep;0.00587962408632092!GO:0004667;prostaglandin-D synthase activity;0.00587962408632092!GO:0050802;circadian sleep/wake cycle, sleep;0.00587962408632092!GO:0022410;circadian sleep/wake cycle process;0.00587962408632092!GO:0042749;regulation of circadian sleep/wake cycle;0.00587962408632092!GO:0043038;amino acid activation;0.00588016145973418!GO:0006418;tRNA aminoacylation for protein translation;0.00588016145973418!GO:0043039;tRNA aminoacylation;0.00588016145973418!GO:0008610;lipid biosynthetic process;0.00591828719422632!GO:0005667;transcription factor complex;0.00611647130861986!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00620691640324342!GO:0019888;protein phosphatase regulator activity;0.00636431245017328!GO:0051168;nuclear export;0.00656064573734791!GO:0008139;nuclear localization sequence binding;0.00664321470623582!GO:0006643;membrane lipid metabolic process;0.00669872941375084!GO:0007272;ensheathment of neurons;0.00671352563037469!GO:0008366;axon ensheathment;0.00671352563037469!GO:0006974;response to DNA damage stimulus;0.0067207675398687!GO:0031114;regulation of microtubule depolymerization;0.00674368555582646!GO:0007026;negative regulation of microtubule depolymerization;0.00674368555582646!GO:0016740;transferase activity;0.00706244167215622!GO:0006891;intra-Golgi vesicle-mediated transport;0.00739383365069699!GO:0050811;GABA receptor binding;0.00744608751453836!GO:0003729;mRNA binding;0.00791826390198872!GO:0000902;cell morphogenesis;0.00809209412553882!GO:0032989;cellular structure morphogenesis;0.00809209412553882!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00838653796783102!GO:0005938;cell cortex;0.00838653796783102!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00841886170813594!GO:0006607;NLS-bearing substrate import into nucleus;0.00841886170813594!GO:0003713;transcription coactivator activity;0.00846741289511053!GO:0046474;glycerophospholipid biosynthetic process;0.00848958062125214!GO:0030139;endocytic vesicle;0.00855394489781579!GO:0051129;negative regulation of cellular component organization and biogenesis;0.0086073532834713!GO:0007005;mitochondrion organization and biogenesis;0.0086073532834713!GO:0006612;protein targeting to membrane;0.00965302747128243!GO:0016787;hydrolase activity;0.0097068737976674!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.0100639057148799!GO:0030258;lipid modification;0.0101038255174356!GO:0004298;threonine endopeptidase activity;0.0101428535505018!GO:0008186;RNA-dependent ATPase activity;0.0102934157458305!GO:0007034;vacuolar transport;0.0105321129680191!GO:0019902;phosphatase binding;0.0109981725105553!GO:0005885;Arp2/3 protein complex;0.0111183470779179!GO:0005788;endoplasmic reticulum lumen;0.01117548803623!GO:0016859;cis-trans isomerase activity;0.0112933042533251!GO:0006401;RNA catabolic process;0.0112933042533251!GO:0006672;ceramide metabolic process;0.0112973166555564!GO:0022402;cell cycle process;0.0113830206340183!GO:0031109;microtubule polymerization or depolymerization;0.0113879221933621!GO:0046519;sphingoid metabolic process;0.011725556712567!GO:0006810;transport;0.0117864252370765!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.0118561001899292!GO:0001558;regulation of cell growth;0.0118561001899292!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.01193205233519!GO:0005869;dynactin complex;0.0121587521267636!GO:0015629;actin cytoskeleton;0.012298929764435!GO:0005048;signal sequence binding;0.012327107447812!GO:0019717;synaptosome;0.0125454388103797!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.0125454388103797!GO:0016050;vesicle organization and biogenesis;0.0129905459044235!GO:0019843;rRNA binding;0.0131214699392518!GO:0032940;secretion by cell;0.0134081313228623!GO:0005856;cytoskeleton;0.0134081313228623!GO:0006399;tRNA metabolic process;0.0141528933711707!GO:0051540;metal cluster binding;0.0142305952527466!GO:0051536;iron-sulfur cluster binding;0.0142305952527466!GO:0003899;DNA-directed RNA polymerase activity;0.0142703948607128!GO:0006892;post-Golgi vesicle-mediated transport;0.0145222442650294!GO:0006091;generation of precursor metabolites and energy;0.0145247817930479!GO:0015682;ferric iron transport;0.0148575406493959!GO:0015091;ferric iron transmembrane transporter activity;0.0148575406493959!GO:0031643;positive regulation of myelination;0.0148575406493959!GO:0051539;4 iron, 4 sulfur cluster binding;0.015002127929523!GO:0000118;histone deacetylase complex;0.015002127929523!GO:0030658;transport vesicle membrane;0.0150593334100865!GO:0043021;ribonucleoprotein binding;0.015094354796054!GO:0005801;cis-Golgi network;0.0156399303718326!GO:0046839;phospholipid dephosphorylation;0.0159053362316227!GO:0007266;Rho protein signal transduction;0.0159234790318012!GO:0009165;nucleotide biosynthetic process;0.0159309940983333!GO:0005868;cytoplasmic dynein complex;0.0160810960209066!GO:0030384;phosphoinositide metabolic process;0.0166775963160771!GO:0004113;2',3'-cyclic-nucleotide 3'-phosphodiesterase activity;0.0175702333531291!GO:0009214;cyclic nucleotide catabolic process;0.0175702333531291!GO:0009108;coenzyme biosynthetic process;0.0175702333531291!GO:0001578;microtubule bundle formation;0.0178719348999297!GO:0019222;regulation of metabolic process;0.018082290933631!GO:0033673;negative regulation of kinase activity;0.0185487662102498!GO:0006469;negative regulation of protein kinase activity;0.0185487662102498!GO:0051789;response to protein stimulus;0.0190115136455144!GO:0006986;response to unfolded protein;0.0190115136455144!GO:0006383;transcription from RNA polymerase III promoter;0.0192798083085818!GO:0003711;transcription elongation regulator activity;0.0195110591220465!GO:0004674;protein serine/threonine kinase activity;0.0198240611173911!GO:0006364;rRNA processing;0.0205045004026671!GO:0048468;cell development;0.0208360713376985!GO:0006338;chromatin remodeling;0.0216086624076003!GO:0005085;guanyl-nucleotide exchange factor activity;0.0217869342158683!GO:0009081;branched chain family amino acid metabolic process;0.0218184765344934!GO:0007050;cell cycle arrest;0.0220221511857087!GO:0042578;phosphoric ester hydrolase activity;0.0223613212544468!GO:0016301;kinase activity;0.0224983596118897!GO:0006644;phospholipid metabolic process;0.0226669468535402!GO:0051348;negative regulation of transferase activity;0.022671349783135!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.022930116135182!GO:0033043;regulation of organelle organization and biogenesis;0.022930116135182!GO:0030660;Golgi-associated vesicle membrane;0.0231552654181075!GO:0016579;protein deubiquitination;0.0232759548229755!GO:0005774;vacuolar membrane;0.0236186731774965!GO:0044448;cell cortex part;0.0237338999179346!GO:0046489;phosphoinositide biosynthetic process;0.0239628220411965!GO:0006752;group transfer coenzyme metabolic process;0.0239633552818453!GO:0007041;lysosomal transport;0.0239633552818453!GO:0005762;mitochondrial large ribosomal subunit;0.0240580114176601!GO:0000315;organellar large ribosomal subunit;0.0240580114176601!GO:0043681;protein import into mitochondrion;0.024215076622152!GO:0017166;vinculin binding;0.0242300275694105!GO:0004004;ATP-dependent RNA helicase activity;0.0242729481334313!GO:0051920;peroxiredoxin activity;0.0242729481334313!GO:0033116;ER-Golgi intermediate compartment membrane;0.0243025471832567!GO:0016363;nuclear matrix;0.0251655133172361!GO:0030137;COPI-coated vesicle;0.0257969532432934!GO:0004576;oligosaccharyl transferase activity;0.0267000449874112!GO:0051261;protein depolymerization;0.0267263293749489!GO:0006260;DNA replication;0.0269503157794122!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0270125585690291!GO:0016126;sterol biosynthetic process;0.0270539084400182!GO:0006281;DNA repair;0.027211757174461!GO:0001508;regulation of action potential;0.0274223939041637!GO:0016790;thiolester hydrolase activity;0.0275409428915527!GO:0006509;membrane protein ectodomain proteolysis;0.0277224295646001!GO:0033619;membrane protein proteolysis;0.0277224295646001!GO:0006665;sphingolipid metabolic process;0.0278830500574323!GO:0030320;cellular monovalent inorganic anion homeostasis;0.0283018043845276!GO:0055083;monovalent inorganic anion homeostasis;0.0283018043845276!GO:0055064;chloride ion homeostasis;0.0283018043845276!GO:0030644;cellular chloride ion homeostasis;0.0283018043845276!GO:0012506;vesicle membrane;0.0283018043845276!GO:0019911;structural constituent of myelin sheath;0.0286572247658725!GO:0030742;GTP-dependent protein binding;0.0287865818896235!GO:0048500;signal recognition particle;0.0290261778039534!GO:0008250;oligosaccharyl transferase complex;0.0299057361479485!GO:0015980;energy derivation by oxidation of organic compounds;0.0302856466125038!GO:0030663;COPI coated vesicle membrane;0.0305833908352116!GO:0030126;COPI vesicle coat;0.0305833908352116!GO:0050435;beta-amyloid metabolic process;0.0308665945277781!GO:0000287;magnesium ion binding;0.0310789323085431!GO:0016779;nucleotidyltransferase activity;0.0311693516192876!GO:0022406;membrane docking;0.0311693516192876!GO:0048278;vesicle docking;0.0311693516192876!GO:0007030;Golgi organization and biogenesis;0.0314764892759052!GO:0030119;AP-type membrane coat adaptor complex;0.0324727291711186!GO:0007004;telomere maintenance via telomerase;0.0327090979435381!GO:0031124;mRNA 3'-end processing;0.0327090979435381!GO:0051252;regulation of RNA metabolic process;0.0328131581709976!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0337946885678088!GO:0016072;rRNA metabolic process;0.0342130379654913!GO:0008022;protein C-terminus binding;0.0346385407894344!GO:0030135;coated vesicle;0.0346385407894344!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0349411039753661!GO:0010257;NADH dehydrogenase complex assembly;0.0349411039753661!GO:0033108;mitochondrial respiratory chain complex assembly;0.0349411039753661!GO:0007006;mitochondrial membrane organization and biogenesis;0.0349411039753661!GO:0065004;protein-DNA complex assembly;0.0350811659823351!GO:0007243;protein kinase cascade;0.0355754286955089!GO:0004860;protein kinase inhibitor activity;0.0360848586571886!GO:0006595;polyamine metabolic process;0.0360848586571886!GO:0030131;clathrin adaptor complex;0.0360848586571886!GO:0040008;regulation of growth;0.0360848586571886!GO:0009083;branched chain family amino acid catabolic process;0.0361778793462658!GO:0006414;translational elongation;0.0367304482028303!GO:0050178;phenylpyruvate tautomerase activity;0.0369588439334109!GO:0043284;biopolymer biosynthetic process;0.0373622812192717!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0373622812192717!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0373622812192717!GO:0007017;microtubule-based process;0.0375072729070307!GO:0005637;nuclear inner membrane;0.0375958196604226!GO:0051179;localization;0.0377462393557525!GO:0006979;response to oxidative stress;0.0377705711471604!GO:0042158;lipoprotein biosynthetic process;0.0377953005416654!GO:0016491;oxidoreductase activity;0.0381510322293305!GO:0019904;protein domain specific binding;0.0382795599443816!GO:0042981;regulation of apoptosis;0.0382795599443816!GO:0032318;regulation of Ras GTPase activity;0.0385468136090615!GO:0008429;phosphatidylethanolamine binding;0.0388452965533887!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0392177268452243!GO:0035035;histone acetyltransferase binding;0.0394133310158483!GO:0031110;regulation of microtubule polymerization or depolymerization;0.0398684314481615!GO:0032956;regulation of actin cytoskeleton organization and biogenesis;0.0399674041844109!GO:0048154;S100 beta binding;0.040385826040598!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.040385826040598!GO:0009719;response to endogenous stimulus;0.040430262428967!GO:0006779;porphyrin biosynthetic process;0.0405307789131427!GO:0033014;tetrapyrrole biosynthetic process;0.0405307789131427!GO:0001887;selenium metabolic process;0.040619164672338!GO:0043067;regulation of programmed cell death;0.0406374927455347!GO:0006778;porphyrin metabolic process;0.0411697742395647!GO:0033013;tetrapyrrole metabolic process;0.0411697742395647!GO:0030176;integral to endoplasmic reticulum membrane;0.0414227391920406!GO:0000209;protein polyubiquitination;0.0414227391920406!GO:0030911;TPR domain binding;0.0414227391920406!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0421881778421045!GO:0045446;endothelial cell differentiation;0.0437270518021025!GO:0044433;cytoplasmic vesicle part;0.0443185817187819!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0448923751904286!GO:0045047;protein targeting to ER;0.0448923751904286!GO:0005765;lysosomal membrane;0.0453567820671958!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0453567820671958!GO:0015002;heme-copper terminal oxidase activity;0.0453567820671958!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0453567820671958!GO:0004129;cytochrome-c oxidase activity;0.0453567820671958!GO:0051427;hormone receptor binding;0.0468997899077091!GO:0030659;cytoplasmic vesicle membrane;0.0470669971683397!GO:0051287;NAD binding;0.0472059810222357!GO:0043254;regulation of protein complex assembly;0.047779462787188!GO:0043488;regulation of mRNA stability;0.047779462787188!GO:0043487;regulation of RNA stability;0.047779462787188!GO:0006904;vesicle docking during exocytosis;0.0479181365405948!GO:0006497;protein amino acid lipidation;0.0483094498947444!GO:0021782;glial cell development;0.048507773331012!GO:0016581;NuRD complex;0.048507773331012
|sample_id=10277
|sample_note=
|sample_sex=male
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=optic nerve
|top_motifs=SOX5:4.13144263399;XBP1:3.39925162705;FOXP1:3.35703831675;SOX2:3.21708074801;SOX{8,9,10}:2.78492918536;SOX17:2.6415170472;NHLH1,2:2.52816275447;ALX1:2.52325823014;ZFP161:2.33053831227;MED-1{core}:2.29442742394;HIC1:2.20438552043;POU6F1:2.10179868527;NFIX:2.02410277264;MTE{core}:1.90636895714;ATF2:1.86057087796;REST:1.85529823367;EP300:1.84996969601;NKX3-2:1.8188092907;RBPJ:1.75503568712;CUX2:1.75154924392;NANOG:1.71459697365;GATA4:1.57321761671;TFAP2B:1.54045186022;FOXO1,3,4:1.52666501648;PITX1..3:1.52411098805;DBP:1.52383188092;TFAP2{A,C}:1.51569693826;FOX{F1,F2,J1}:1.51042985211;MYFfamily:1.4426149886;BREu{core}:1.440189532;AR:1.43106566501;LMO2:1.42197589907;ZBTB6:1.39902290763;ZNF423:1.37445858437;PAX6:1.3743219776;FOX{D1,D2}:1.36415865776;ZNF384:1.36033041134;HOX{A6,A7,B6,B7}:1.35822194089;JUN:1.3566118354;HOXA9_MEIS1:1.27532052978;PRRX1,2:1.25551791303;SMAD1..7,9:1.24691891658;GTF2I:1.20361817032;NR3C1:1.16587724334;TGIF1:1.1411682337;FOXP3:1.11673050414;HBP1_HMGB_SSRP1_UBTF:1.07142245432;CRX:1.06811120577;MTF1:1.04380395086;SPZ1:1.01756691919;FOXQ1:0.992985386611;MZF1:0.963811068726;MAZ:0.907589284293;LEF1_TCF7_TCF7L1,2:0.874060702781;PATZ1:0.80758664775;BPTF:0.804487314832;MYBL2:0.792269905084;RREB1:0.7497198474;EBF1:0.707960533031;SREBF1,2:0.667536667715;OCT4_SOX2{dimer}:0.65349348434;PAX5:0.626871738594;EGR1..3:0.558927456405;RFX2..5_RFXANK_RFXAP:0.546408719122;MAFB:0.54613892089;GFI1B:0.539468031921;NKX6-1,2:0.53020697864;CREB1:0.520610967834;POU3F1..4:0.517246876791;NKX2-2,8:0.50542659189;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.446678001111;ZBTB16:0.439669924314;RFX1:0.420595462329;TFDP1:0.415702008118;STAT2,4,6:0.310532020872;FOXM1:0.303121645915;NRF1:0.282971882932;ZNF143:0.251312694523;KLF4:0.20955530633;ZIC1..3:0.194281809409;IKZF2:0.18208908923;STAT5{A,B}:0.151473463178;FOXD3:0.148419179436;PAX4:0.139737022263;TLX1..3_NFIC{dimer}:0.131947243611;IRF7:0.106417803942;SP1:0.0869042488164;GZF1:0.0859636867878;RORA:0.0824054713477;TOPORS:0.0779700978945;LHX3,4:0.0773212422058;TBX4,5:0.0757616062024;ZNF238:0.074094665239;ARID5B:0.0685940459879;GCM1,2:0.0425087883358;PRDM1:0.0327407614336;ADNP_IRX_SIX_ZHX:0.00168516431372;HMGA1,2:-0.00945314607689;YY1:-0.033249502505;CDC5L:-0.0394822359827;TFAP4:-0.0399626835382;GTF2A1,2:-0.0426177082178;NR5A1,2:-0.061925513117;HOX{A4,D4}:-0.0800508550272;NKX2-3_NKX2-5:-0.0828609221395;HMX1:-0.121943380433;STAT1,3:-0.128010770578;AHR_ARNT_ARNT2:-0.138141045895;ESRRA:-0.142926275917;FOX{I1,J2}:-0.149100938212;NFIL3:-0.181397184074;RXR{A,B,G}:-0.186084632812;ATF5_CREB3:-0.206661211277;HNF4A_NR2F1,2:-0.236571741397;GATA6:-0.253913083001;NFATC1..3:-0.276810904882;ONECUT1,2:-0.283993233898;TAL1_TCF{3,4,12}:-0.289238696921;PDX1:-0.319099538959;MEF2{A,B,C,D}:-0.338578004674;IRF1,2:-0.346201966395;EVI1:-0.367875033125;HNF1A:-0.395681760686;TFCP2:-0.412028987462;NANOG{mouse}:-0.414998493189;PAX2:-0.452504785688;ZEB1:-0.454813131542;FOXN1:-0.458216680255;PBX1:-0.475746271344;POU5F1:-0.476011909354;HES1:-0.496074394093;IKZF1:-0.506038981138;NKX2-1,4:-0.531847975302;TBP:-0.546145727548;HAND1,2:-0.569039626141;ATF6:-0.569251640316;PAX1,9:-0.574765179058;NFY{A,B,C}:-0.581076803123;NFE2:-0.58440995363;TEAD1:-0.595352073255;ETS1,2:-0.601116706478;CEBPA,B_DDIT3:-0.617312129607;ESR1:-0.621120155099;SRF:-0.658628663542;SPIB:-0.659537719023;XCPE1{core}:-0.660445687648;FOXL1:-0.674840321043;FOSL2:-0.698825098819;TP53:-0.715323056028;NFE2L2:-0.726317582625;FOXA2:-0.730473532194;FOS_FOS{B,L1}_JUN{B,D}:-0.734471318966;HLF:-0.740040932693;NKX3-1:-0.746799839008;ALX4:-0.749303522578;T:-0.755771108223;BACH2:-0.770026302836;CDX1,2,4:-0.779909908293;UFEwm:-0.789249832297;ATF4:-0.790487745377;TEF:-0.795582547086;MYOD1:-0.811292641523;NFE2L1:-0.841191367557;TLX2:-0.876073330309;SPI1:-0.953334248793;RUNX1..3:-0.959683188528;POU1F1:-0.962701789915;POU2F1..3:-0.96644561159;GFI1:-0.97499100086;NFKB1_REL_RELA:-0.992158926087;SNAI1..3:-1.01330586878;HIF1A:-1.02192816242;DMAP1_NCOR{1,2}_SMARC:-1.05946828159;ELF1,2,4:-1.09418563647;PAX8:-1.09648107318;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.10331155255;AIRE:-1.14323762651;MYB:-1.18928851903;E2F1..5:-1.20703829632;VSX1,2:-1.23028327382;NR6A1:-1.33321544889;ELK1,4_GABP{A,B1}:-1.35680960174;bHLH_family:-1.44710578243;GLI1..3:-1.50337522868;PAX3,7:-1.56858768556;ZNF148:-1.60962899358;NR1H4:-1.70579982267;RXRA_VDR{dimer}:-1.76205880984;HSF1,2:-1.9966143511;EN1,2:-2.07372290766;HOX{A5,B5}:-2.09022899375;PPARG:-2.91062579172
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10277-104E7;search_select_hide=table117:FF:10277-104E7
}}
}}

Latest revision as of 13:57, 3 June 2020

Name:optic nerve, donor1
Species:Human (Homo sapiens)
Library ID:CNhs13449
Sample type:tissues
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueoptic nerve
dev stageNA
sexmale
ageNA
cell typeCELL MIXTURE - tissue sample
cell lineNA
companyNA
collaborationAlessandro Bonetti
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number1-On
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005088
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs13449 CAGE DRX008696 DRR009568
Accession ID Hg19

Library idBAMCTSS
CNhs13449 DRZ000993 DRZ002378
Accession ID Hg38

Library idBAMCTSS
CNhs13449 DRZ012343 DRZ013728
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.63
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.402
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0.385
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.195
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.636
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.574
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.542
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.805
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.0269
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0.586
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.0963
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.587
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.385
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial1.291
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0.827
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13449

Jaspar motifP-value
MA0002.20.124
MA0003.10.253
MA0004.10.159
MA0006.10.607
MA0007.10.636
MA0009.10.213
MA0014.10.382
MA0017.10.0115
MA0018.20.146
MA0019.10.918
MA0024.10.784
MA0025.10.654
MA0027.10.691
MA0028.10.00282
MA0029.10.297
MA0030.10.0961
MA0031.10.0926
MA0035.20.193
MA0038.10.769
MA0039.20.0351
MA0040.10.96
MA0041.10.703
MA0042.10.905
MA0043.10.806
MA0046.10.0953
MA0047.20.628
MA0048.10.0576
MA0050.10.00298
MA0051.10.0876
MA0052.10.202
MA0055.10.0019
MA0057.10.641
MA0058.10.229
MA0059.10.0507
MA0060.10.321
MA0061.16.3616e-4
MA0062.21.83862e-6
MA0065.20.0306
MA0066.10.0135
MA0067.10.712
MA0068.10.359
MA0069.10.864
MA0070.10.95
MA0071.10.0747
MA0072.10.82
MA0073.10.318
MA0074.10.395
MA0076.10.00168
MA0077.14.65675e-4
MA0078.10.06
MA0079.20.665
MA0080.28.91792e-7
MA0081.10.00652
MA0083.10.0781
MA0084.10.044
MA0087.10.0997
MA0088.10.25
MA0090.10.392
MA0091.10.535
MA0092.10.748
MA0093.10.17
MA0099.28.81409e-16
MA0100.10.277
MA0101.18.24592e-5
MA0102.20.18
MA0103.10.0426
MA0104.20.232
MA0105.11.0735e-4
MA0106.10.125
MA0107.16.84232e-5
MA0108.20.206
MA0111.10.838
MA0112.20.0033
MA0113.10.656
MA0114.10.0462
MA0115.10.973
MA0116.13.57985e-4
MA0117.10.524
MA0119.10.447
MA0122.10.499
MA0124.10.988
MA0125.10.234
MA0131.10.896
MA0135.10.432
MA0136.12.27782e-12
MA0137.20.625
MA0138.20.411
MA0139.10.399
MA0140.10.463
MA0141.10.00489
MA0142.10.893
MA0143.10.0915
MA0144.10.844
MA0145.10.742
MA0146.10.0504
MA0147.10.13
MA0148.10.916
MA0149.10.0424
MA0150.12.29449e-4
MA0152.10.77
MA0153.10.671
MA0154.10.04
MA0155.10.554
MA0156.14.12888e-9
MA0157.10.273
MA0159.10.0385
MA0160.10.0935
MA0162.10.314
MA0163.11.44545e-6
MA0164.10.59
MA0258.10.111
MA0259.10.716



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13449

Novel motifP-value
10.308
100.134
1000.788
1010.634
1020.651
1030.0219
1040.0227
1050.0587
1060.108
1070.513
1080.574
1090.00263
110.0122
1100.0553
1110.695
1120.44
1130.0204
1140.49
1150.419
1160.235
1170.0146
1180.369
1190.845
120.374
1200.0328
1210.848
1220.907
1230.00103
1240.536
1250.913
1260.145
1270.195
1280.698
1290.942
130.00522
1300.0568
1310.0035
1320.437
1330.114
1340.444
1350.879
1360.0031
1370.294
1380.463
1390.73
140.93
1400.179
1410.881
1420.497
1430.0808
1440.305
1450.792
1460.926
1470.985
1480.882
1490.177
150.102
1500.0808
1510.942
1520.0906
1530.297
1540.141
1550.771
1560.493
1570.434
1580.351
1590.0765
160.0549
1600.347
1610.329
1620.526
1630.798
1640.015
1650.0999
1660.821
1670.229
1680.67
1690.109
170.178
180.113
190.445
20.737
200.185
210.161
220.237
230.793
240.0022
250.467
260.143
270.297
280.936
295.1869e-4
30.0842
300.597
310.766
320.0243
330.15
340.667
350.749
360.583
370.0315
380.615
390.465
40.635
400.196
410.605
420.421
430.287
440.00703
450.824
460.085
470.0787
480.055
490.49
50.455
500.629
510.607
520.976
530.14
540.908
550.831
560.936
570.815
580.286
590.0326
60.55
600.203
610.13
620.135
630.96
640.178
650.381
660.0837
670.676
680.206
690.435
70.135
700.713
710.00806
720.0678
730.0226
740.79
750.0104
760.685
770.1
780.0165
790.15
80.104
800.324
810.532
820.96
830.0247
840.49
850.351
860.21
870.00108
880.578
890.128
90.252
900.626
910.363
920.668
930.569
940.466
950.00285
960.274
970.88
980.426
990.761



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs13449


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000941 (cranial nerve II)
0003714 (neural tissue)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0005162 (multi cell component structure)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0001785 (cranial nerve)
0002464 (nerve trunk)
0004904 (nerve connecting eye with brain)
0000122 (neuron projection bundle)
0001021 (nerve)
0004732 (segmental subdivision of nervous system)
0001032 (sensory system)
0010317 (germ layer / neural crest derived structure)
0000010 (peripheral nervous system)
0001016 (nervous system)
0002104 (visual system)
0004456 (entire sense organ system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0011166 (human optic nerve sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0003056 (pre-chordal neural plate)
UBERON:0005425 (presumptive neural retina)
UBERON:0010316 (germ layer / neural crest)

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