FFCP PHASE1:Hg19::chr11:67071050..67071063,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=54961|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=30581|TSSclassifier=S|UniProt=|association_with_transcript=-33bp_to_ENST00000376757_5end|description=CAGE_peak_3_at_SSH3_5end|id=chr11:67071050..67071063,+|ontology_enrichment_celltype=CL:0000066!4.44e-27!254;CL:0002076!3.72e-16!43;CL:0000223!2.08e-11!59;CL:0002251!5.00e-08!21;CL:0002368!5.24e-08!13;CL:0000076!7.36e-08!62|ontology_enrichment_celltype_v019=CL:0002076;5.50e-16;42!CL:0002368;2.36e-14;13!CL:0002202;1.91e-08;9!CL:0002632;1.91e-08;9!CL:0002251;4.06e-08;20!CL:0002328;1.13e-07;3!CL:0000307;3.54e-07;3|ontology_enrichment_celltype_v019_2=CL:0000066,6.59e-25,253;CL:0002076,1.95e-21,42;CL:0000223,4.09e-16,58;CL:0002368,9.96e-15,13;CL:0002202,1.72e-08,9;CL:0002632,1.72e-08,9;CL:0002251,4.96e-08,20;CL:0000076,5.80e-08,63;CL:0002328,1.06e-07,3;CL:0000068,3.19e-07,3;CL:0000069,3.19e-07,3;CL:0000307,3.19e-07,3;CL:0000377,3.19e-07,3|ontology_enrichment_development_v019=CL:0000223;6.45e-09;58!CL:0000377;3.54e-07;3|ontology_enrichment_disease=DOID:305!2.24e-12!106;DOID:1749!2.01e-08!14;DOID:299!4.46e-08!25;DOID:0050687!5.37e-07!143|ontology_enrichment_disease_v019=DOID:299;2.10e-10;25!DOID:1749;4.30e-10;14!DOID:5093;4.83e-09;4!DOID:1612;4.83e-09;4|ontology_enrichment_disease_v019_2=DOID:305,6.73e-13,106;DOID:299,2.43e-10,25;DOID:1749,5.34e-10,14;DOID:5093,5.25e-09,4;DOID:1612,5.25e-09,4;DOID:0050687,1.85e-08,143|ontology_enrichment_uberon=UBERON:0004119!9.88e-13!169;UBERON:0000925!9.88e-13!169;UBERON:0006595!9.88e-13!169;UBERON:0001004!5.37e-10!72;UBERON:0001007!6.69e-10!155;UBERON:0001555!6.69e-10!155;UBERON:0007026!6.69e-10!155;UBERON:0001008!9.98e-10!45;UBERON:0006554!2.83e-09!44;UBERON:0000468!1.80e-08!659;UBERON:0000464!2.04e-08!104;UBERON:0000161!3.43e-08!35;UBERON:0000481!3.44e-08!347;UBERON:0003104!5.06e-08!238;UBERON:0009142!5.06e-08!238;UBERON:0003064!6.18e-08!37;UBERON:0005157!6.42e-08!51;UBERON:0000475!6.91e-08!365;UBERON:0004921!9.40e-08!129;UBERON:0004185!9.40e-08!129;UBERON:0000467!2.06e-07!625;UBERON:0000065!2.30e-07!53;UBERON:0000480!2.80e-07!626;UBERON:0000062!4.56e-07!511|ontology_enrichment_uberon_v019=UBERON:0005911;6.79e-09;36!UBERON:0000161;3.39e-08;19!UBERON:0000166;3.39e-08;19!UBERON:0004815;1.13e-07;3!UBERON:0002031;1.13e-07;3!UBERON:0000365;4.52e-07;5!UBERON:0002294;7.81e-07;7!UBERON:0001173;7.81e-07;7|ontology_enrichment_uberon_v019_2=UBERON:0004119,1.74e-14,160;UBERON:0000925,1.74e-14,160;UBERON:0006595,1.74e-14,160;UBERON:0001004,1.01e-10,74;UBERON:0001007,1.01e-10,145;UBERON:0001555,1.01e-10,145;UBERON:0007026,1.01e-10,145;UBERON:0000161,1.55e-10,36;UBERON:0004921,3.79e-09,118;UBERON:0000166,6.50e-08,22;UBERON:0004815,1.06e-07,3;UBERON:0002031,1.06e-07,3;UBERON:0005911,1.71e-07,82;UBERON:0000065,2.50e-07,54;UBERON:0000915,3.52e-07,52;UBERON:0000365,5.05e-07,5;UBERON:0005157,7.20e-07,47|phase1_expression=0.181678379270557,0.214100523890983,0.140954404095971,0,0,0,0,0,0,0.737201809504527,2.79120467188971,0.655324116390517,0.527533956456907,0,0,0,0,0,0,0.123121058076788,0,0,0,0,0.125542639594803,0,0,0,0.393364276848904,0,0,6.43594857135249,4.819294700452,4.43704812200145,0,0,0.293600439334847,0,0.200544447470142,0,0,0.32389366601898,0,0.290796477559129,0,0,0,0,0,0,0,0,0.344745680736619,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211255286311942,0.212604299965044,0,0.336985893439485,0,0,0,0,0.182664153764634,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.260118695119756,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0,0,0,0,0.189069634328136,0,0.175669571386252,0.0654895377488563,4.00724817121796,3.33705998505986,0,0,0.26591592103773,0,0,0,0,0.860234595106124,0.347140501607594,0,0,0.550236083880135,0,0,0.35576626268671,0.33472061276467,0,0,0.24406205754817,0,0,0.0892997282840798,0,0.112611480483322,0,0,0.183201743930407,0,0,2.61656431285521,0.496971951695318,0.12663051166458,0.529636723252875,0.286836620748814,0,0,0,0.24666754841716,0,0.134710672069688,0,0.151357427644931,0,0,0.312160076830321,0.570471821544449,0.448346041655403,0,0,0,0.408308342509787,0,0.309977343527296,0,0.247266929278557,0,0.718618141816238,0,0.125118519871964,0,0,0,0,0.113432183160021,0,0,0.211931901159562,0.300091096084402,0,0.515281080091258,0.37223371266318,0.168776332241266,0.0974370051611986,0.252433774244115,0.0920498986422993,0.161646056818812,0,0.10075209822764,0.169560592310488,2.51239109112286,2.18196896472668,0.860413786167011,0,0,0,0,0,0,0,0,0,0,0,0.354920400119532,0.337169380156203,0,0.220587945464788,0,0.237270619111097,0.539325232640658,0.196221465125346,0.38474715694639,0,0,0,0,0,0,0,0,1.47586126251736,0.343135620597051,2.85350742062426,4.49607013030478,0.703702806881416,0.833296006426766,0.325808305310325,0,0,0.231860809950154,0.117408694235822,0,0,0.380508304469197,3.1608175918371,4.29243081047436,0.246217006087397,0,0,0.93733833986777,2.35174979478403,0.708875486211932,1.34337784054272,0.581267877027924,1.53353071666084,0,0,0.621984346622316,0.28823990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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=54961 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30581 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=-33bp_to_ENST00000376757_5end | |||
|description=CAGE_peak_3_at_SSH3_5end | |||
|id=chr11:67071050..67071063,+ | |||
|ontology_enrichment_celltype=CL:0000066!4.44e-27!254;CL:0002076!3.72e-16!43;CL:0000223!2.08e-11!59;CL:0002251!5.00e-08!21;CL:0002368!5.24e-08!13;CL:0000076!7.36e-08!62 | |||
|ontology_enrichment_celltype_v019=CL:0002076;5.50e-16;42!CL:0002368;2.36e-14;13!CL:0002202;1.91e-08;9!CL:0002632;1.91e-08;9!CL:0002251;4.06e-08;20!CL:0002328;1.13e-07;3!CL:0000307;3.54e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,6.59e-25,253;CL:0002076,1.95e-21,42;CL:0000223,4.09e-16,58;CL:0002368,9.96e-15,13;CL:0002202,1.72e-08,9;CL:0002632,1.72e-08,9;CL:0002251,4.96e-08,20;CL:0000076,5.80e-08,63;CL:0002328,1.06e-07,3;CL:0000068,3.19e-07,3;CL:0000069,3.19e-07,3;CL:0000307,3.19e-07,3;CL:0000377,3.19e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000223;6.45e-09;58!CL:0000377;3.54e-07;3 | |||
|ontology_enrichment_disease=DOID:305!2.24e-12!106;DOID:1749!2.01e-08!14;DOID:299!4.46e-08!25;DOID:0050687!5.37e-07!143 | |||
|ontology_enrichment_disease_v019=DOID:299;2.10e-10;25!DOID:1749;4.30e-10;14!DOID:5093;4.83e-09;4!DOID:1612;4.83e-09;4 | |||
|ontology_enrichment_disease_v019_2=DOID:305,6.73e-13,106;DOID:299,2.43e-10,25;DOID:1749,5.34e-10,14;DOID:5093,5.25e-09,4;DOID:1612,5.25e-09,4;DOID:0050687,1.85e-08,143 | |||
|ontology_enrichment_uberon=UBERON:0004119!9.88e-13!169;UBERON:0000925!9.88e-13!169;UBERON:0006595!9.88e-13!169;UBERON:0001004!5.37e-10!72;UBERON:0001007!6.69e-10!155;UBERON:0001555!6.69e-10!155;UBERON:0007026!6.69e-10!155;UBERON:0001008!9.98e-10!45;UBERON:0006554!2.83e-09!44;UBERON:0000468!1.80e-08!659;UBERON:0000464!2.04e-08!104;UBERON:0000161!3.43e-08!35;UBERON:0000481!3.44e-08!347;UBERON:0003104!5.06e-08!238;UBERON:0009142!5.06e-08!238;UBERON:0003064!6.18e-08!37;UBERON:0005157!6.42e-08!51;UBERON:0000475!6.91e-08!365;UBERON:0004921!9.40e-08!129;UBERON:0004185!9.40e-08!129;UBERON:0000467!2.06e-07!625;UBERON:0000065!2.30e-07!53;UBERON:0000480!2.80e-07!626;UBERON:0000062!4.56e-07!511 | |||
|ontology_enrichment_uberon_v019=UBERON:0005911;6.79e-09;36!UBERON:0000161;3.39e-08;19!UBERON:0000166;3.39e-08;19!UBERON:0004815;1.13e-07;3!UBERON:0002031;1.13e-07;3!UBERON:0000365;4.52e-07;5!UBERON:0002294;7.81e-07;7!UBERON:0001173;7.81e-07;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,1.74e-14,160;UBERON:0000925,1.74e-14,160;UBERON:0006595,1.74e-14,160;UBERON:0001004,1.01e-10,74;UBERON:0001007,1.01e-10,145;UBERON:0001555,1.01e-10,145;UBERON:0007026,1.01e-10,145;UBERON:0000161,1.55e-10,36;UBERON:0004921,3.79e-09,118;UBERON:0000166,6.50e-08,22;UBERON:0004815,1.06e-07,3;UBERON:0002031,1.06e-07,3;UBERON:0005911,1.71e-07,82;UBERON:0000065,2.50e-07,54;UBERON:0000915,3.52e-07,52;UBERON:0000365,5.05e-07,5;UBERON:0005157,7.20e-07,47 | |||
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| |||
|short_description=p3@SSH3 | |||
}} |
Revision as of 19:14, 10 September 2013
Short description: | p3@SSH3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_SSH3_5end |
Coexpression cluster: | NA |
Association with transcript: | -33bp_to_ENST00000376757_5end |
EntrezGene: | SSH3 |
HGNC: | 30581 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 6.59e-25 | 253 |
endo-epithelial cell | 1.95e-21 | 42 |
endodermal cell | 4.09e-16 | 58 |
respiratory epithelial cell | 9.96e-15 | 13 |
epithelial cell of tracheobronchial tree | 1.72e-08 | 9 |
epithelial cell of lower respiratory tract | 1.72e-08 | 9 |
epithelial cell of alimentary canal | 4.96e-08 | 20 |
squamous epithelial cell | 5.80e-08 | 63 |
bronchial epithelial cell | 1.06e-07 | 3 |
duct epithelial cell | 3.19e-07 | 3 |
branched duct epithelial cell | 3.19e-07 | 3 |
tracheal epithelial cell | 3.19e-07 | 3 |
tracheoblast | 3.19e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 1.74e-14 | 160 |
endoderm | 1.74e-14 | 160 |
presumptive endoderm | 1.74e-14 | 160 |
respiratory system | 1.01e-10 | 74 |
digestive system | 1.01e-10 | 145 |
digestive tract | 1.01e-10 | 145 |
primitive gut | 1.01e-10 | 145 |
orifice | 1.55e-10 | 36 |
subdivision of digestive tract | 3.79e-09 | 118 |
oral opening | 6.50e-08 | 22 |
lower respiratory tract epithelium | 1.06e-07 | 3 |
epithelium of bronchus | 1.06e-07 | 3 |
endo-epithelium | 1.71e-07 | 82 |
respiratory tract | 2.50e-07 | 54 |
thoracic segment of trunk | 3.52e-07 | 52 |
urothelium | 5.05e-07 | 5 |
epithelial fold | 7.20e-07 | 47 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 6.73e-13 | 106 |
adenocarcinoma | 2.43e-10 | 25 |
squamous cell carcinoma | 5.34e-10 | 14 |
thoracic cancer | 5.25e-09 | 4 |
breast cancer | 5.25e-09 | 4 |
cell type cancer | 1.85e-08 | 143 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.