FFCP PHASE1:Hg19::chr12:40618873..40618889,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=120892|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=18618|TSSclassifier=S|UniProt=Q5S007|association_with_transcript=0bp_to_ENST00000298910_5end|coexpression_cluster_id=C2|description=CAGE_peak_3_at_LRRK2_5end|id=chr12:40618873..40618889,+|ontology_enrichment_celltype=CL:0000738!5.98e-45!140;CL:0002057!4.40e-39!42;CL:0002087!1.16e-37!119;CL:0000860!2.83e-35!45;CL:0000037!1.12e-33!172;CL:0000566!1.12e-33!172;CL:0000766!1.59e-33!76;CL:0002009!5.31e-33!65;CL:0002031!2.13e-32!124;CL:0002194!2.35e-31!63;CL:0000576!2.35e-31!63;CL:0000040!2.35e-31!63;CL:0000559!2.35e-31!63;CL:0002032!6.26e-31!165;CL:0000837!6.26e-31!165;CL:0000988!6.32e-30!182;CL:0000557!1.64e-28!71;CL:0000839!2.69e-26!70;CL:0000763!1.48e-23!112;CL:0000049!1.48e-23!112;CL:0000945!3.25e-13!24;CL:0000826!3.25e-13!24;CL:0000236!1.22e-11!14;CL:0002393!1.13e-10!9;CL:0002397!1.13e-10!9;CL:0000134!6.33e-09!358;CL:0002320!3.42e-08!365;CL:0000094!1.85e-07!8;CL:0000542!3.55e-07!53;CL:0000051!3.55e-07!53;CL:0000451!4.85e-07!10|ontology_enrichment_celltype_v019=CL:0000860;5.57e-46;33!CL:0002057;5.57e-46;33!CL:0000576;3.51e-38;48!CL:0000473;5.06e-30;39!CL:0000234;5.06e-30;39!CL:0000766;1.14e-27;69!CL:0000236;3.22e-21;13!CL:0000945;1.52e-19;24!CL:0002087;3.91e-17;104!CL:0000094;2.02e-15;8!CL:0000738;7.52e-15;136!CL:0002393;2.77e-14;6!CL:0002397;2.77e-14;6!CL:0000763;3.60e-11;100!CL:0000081;7.18e-11;11!CL:0000775;2.96e-09;3!CL:0000988;4.57e-09;177!CL:0000875;4.73e-09;3!CL:0002396;4.73e-09;3!CL:0000219;1.72e-07;193!CL:0000226;2.62e-07;3!CL:0000842;2.62e-07;3|ontology_enrichment_celltype_v019_2=CL:0000860,3.79e-71,42;CL:0002057,3.79e-71,42;CL:0000738,5.07e-63,136;CL:0000473,7.44e-61,48;CL:0000234,7.44e-61,48;CL:0000766,1.06e-54,72;CL:0002087,2.60e-52,115;CL:0000037,7.26e-48,168;CL:0002009,2.30e-47,61;CL:0002194,1.83e-46,59;CL:0000576,1.83e-46,59;CL:0000040,1.83e-46,59;CL:0000559,1.83e-46,59;CL:0002031,1.31e-45,120;CL:0000988,1.38e-44,177;CL:0000557,3.42e-42,67;CL:0002032,5.22e-42,161;CL:0000837,5.22e-42,161;CL:0000839,1.83e-40,66;CL:0000763,3.08e-34,108;CL:0000049,3.08e-34,108;CL:0002393,7.41e-22,9;CL:0002397,7.41e-22,9;CL:0000945,1.62e-19,24;CL:0000826,1.62e-19,24;CL:0000236,1.64e-19,14;CL:0000134,1.78e-15,354;CL:0000094,2.28e-15,8;CL:0002320,7.42e-15,361;CL:0000219,1.12e-12,386;CL:0000081,7.84e-11,11;CL:0000048,4.86e-10,427;CL:0000034,8.82e-10,441;CL:0000723,1.12e-09,433;CL:0000775,2.85e-09,3;CL:0000875,4.81e-09,3;CL:0002396,4.81e-09,3;CL:0000838,4.94e-08,52;CL:0000542,8.23e-08,53;CL:0000051,8.23e-08,53;CL:0000226,2.18e-07,3;CL:0000842,2.18e-07,3|ontology_enrichment_development_v019=CL:0002057;1.25e-46;42!CL:0000049;3.35e-11;108|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002390!1.04e-31!102;UBERON:0003061!1.04e-31!102;UBERON:0002193!8.73e-28!112;UBERON:0002371!4.20e-24!80;UBERON:0001474!7.27e-22!86;UBERON:0007023!9.43e-22!115;UBERON:0004765!6.03e-19!101;UBERON:0001434!6.03e-19!101;UBERON:0002405!9.73e-15!115;UBERON:0003081!1.16e-08!216;UBERON:0000178!4.67e-08!15;UBERON:0000179!4.67e-08!15;UBERON:0000463!4.67e-08!15;UBERON:0002384!6.41e-08!375;UBERON:0002204!1.00e-07!167;UBERON:0000479!9.19e-07!787|ontology_enrichment_uberon_v019=UBERON:0000178;5.20e-18;15!UBERON:0000179;5.20e-18;15!UBERON:0000463;5.20e-18;15!UBERON:0002390;5.05e-07;32|ontology_enrichment_uberon_v019_2=UBERON:0002390,1.88e-47,98;UBERON:0003061,1.88e-47,98;UBERON:0002193,9.67e-44,108;UBERON:0002371,5.88e-36,76;UBERON:0001474,1.47e-32,82;UBERON:0002405,4.10e-29,93;UBERON:0004765,9.87e-29,90;UBERON:0001434,8.16e-25,100;UBERON:0000178,3.97e-18,15;UBERON:0000179,3.97e-18,15;UBERON:0000463,3.97e-18,15;UBERON:0003081,6.05e-18,203;UBERON:0002384,5.19e-14,371;UBERON:0002204,1.20e-11,167;UBERON:0000926,3.70e-07,315;UBERON:0004120,3.70e-07,315;UBERON:0006603,3.70e-07,315|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.21598876669059,3.03772180964799,3.06972047123349,1.18009283054671,0,1.54816123316076,0,0,0,0.0774672005803016,0,0,2.21598163412751,1.80490002723128,1.95309783644267,0.671746422719773,0.647787332037959,0,2.18097358169347,1.88937971844405,4.12392904019288,0.929716147622738,1.23350366406548,2.16794459626573,6.04154023876516,4.86705342405291,11.1146648047635,1.72372840368309,0.645484683583826,2.70852973188684,0.752969358170419,1.91034305040492,3.82029923556644,1.53041946185451,2.88836124368484,4.47535988059329,2.96866170168044,4.9865914405408,8.52449501065388,0.870627715885752,1.70215567407342,1.86846674698672,4.27122730936464,5.21482918420201,9.1219314776149,0,2.20966581592539,1.58231193720442,6.97142444829408,5.52771179909113,6.49941801075965,3.59451619668784,3.90459921387916,6.58974905458029,9.12040779971995,9.15016715115815,11.3251775334073,7.03984977845291,4.91524750135918,3.55803701545422,2.56038133539904,6.4063357925762,6.32227683949932,3.96626923670917,2.86216126360609,2.27685187643779,2.34894875748376,3.05818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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=120892 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18618 | |||
|TSSclassifier=S | |||
|UniProt=Q5S007 | |||
|association_with_transcript=0bp_to_ENST00000298910_5end | |||
|coexpression_cluster_id=C2 | |||
|description=CAGE_peak_3_at_LRRK2_5end | |||
|id=chr12:40618873..40618889,+ | |||
|ontology_enrichment_celltype=CL:0000738!5.98e-45!140;CL:0002057!4.40e-39!42;CL:0002087!1.16e-37!119;CL:0000860!2.83e-35!45;CL:0000037!1.12e-33!172;CL:0000566!1.12e-33!172;CL:0000766!1.59e-33!76;CL:0002009!5.31e-33!65;CL:0002031!2.13e-32!124;CL:0002194!2.35e-31!63;CL:0000576!2.35e-31!63;CL:0000040!2.35e-31!63;CL:0000559!2.35e-31!63;CL:0002032!6.26e-31!165;CL:0000837!6.26e-31!165;CL:0000988!6.32e-30!182;CL:0000557!1.64e-28!71;CL:0000839!2.69e-26!70;CL:0000763!1.48e-23!112;CL:0000049!1.48e-23!112;CL:0000945!3.25e-13!24;CL:0000826!3.25e-13!24;CL:0000236!1.22e-11!14;CL:0002393!1.13e-10!9;CL:0002397!1.13e-10!9;CL:0000134!6.33e-09!358;CL:0002320!3.42e-08!365;CL:0000094!1.85e-07!8;CL:0000542!3.55e-07!53;CL:0000051!3.55e-07!53;CL:0000451!4.85e-07!10 | |||
|ontology_enrichment_celltype_v019=CL:0000860;5.57e-46;33!CL:0002057;5.57e-46;33!CL:0000576;3.51e-38;48!CL:0000473;5.06e-30;39!CL:0000234;5.06e-30;39!CL:0000766;1.14e-27;69!CL:0000236;3.22e-21;13!CL:0000945;1.52e-19;24!CL:0002087;3.91e-17;104!CL:0000094;2.02e-15;8!CL:0000738;7.52e-15;136!CL:0002393;2.77e-14;6!CL:0002397;2.77e-14;6!CL:0000763;3.60e-11;100!CL:0000081;7.18e-11;11!CL:0000775;2.96e-09;3!CL:0000988;4.57e-09;177!CL:0000875;4.73e-09;3!CL:0002396;4.73e-09;3!CL:0000219;1.72e-07;193!CL:0000226;2.62e-07;3!CL:0000842;2.62e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,3.79e-71,42;CL:0002057,3.79e-71,42;CL:0000738,5.07e-63,136;CL:0000473,7.44e-61,48;CL:0000234,7.44e-61,48;CL:0000766,1.06e-54,72;CL:0002087,2.60e-52,115;CL:0000037,7.26e-48,168;CL:0002009,2.30e-47,61;CL:0002194,1.83e-46,59;CL:0000576,1.83e-46,59;CL:0000040,1.83e-46,59;CL:0000559,1.83e-46,59;CL:0002031,1.31e-45,120;CL:0000988,1.38e-44,177;CL:0000557,3.42e-42,67;CL:0002032,5.22e-42,161;CL:0000837,5.22e-42,161;CL:0000839,1.83e-40,66;CL:0000763,3.08e-34,108;CL:0000049,3.08e-34,108;CL:0002393,7.41e-22,9;CL:0002397,7.41e-22,9;CL:0000945,1.62e-19,24;CL:0000826,1.62e-19,24;CL:0000236,1.64e-19,14;CL:0000134,1.78e-15,354;CL:0000094,2.28e-15,8;CL:0002320,7.42e-15,361;CL:0000219,1.12e-12,386;CL:0000081,7.84e-11,11;CL:0000048,4.86e-10,427;CL:0000034,8.82e-10,441;CL:0000723,1.12e-09,433;CL:0000775,2.85e-09,3;CL:0000875,4.81e-09,3;CL:0002396,4.81e-09,3;CL:0000838,4.94e-08,52;CL:0000542,8.23e-08,53;CL:0000051,8.23e-08,53;CL:0000226,2.18e-07,3;CL:0000842,2.18e-07,3 | |||
|ontology_enrichment_development_v019=CL:0002057;1.25e-46;42!CL:0000049;3.35e-11;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!1.04e-31!102;UBERON:0003061!1.04e-31!102;UBERON:0002193!8.73e-28!112;UBERON:0002371!4.20e-24!80;UBERON:0001474!7.27e-22!86;UBERON:0007023!9.43e-22!115;UBERON:0004765!6.03e-19!101;UBERON:0001434!6.03e-19!101;UBERON:0002405!9.73e-15!115;UBERON:0003081!1.16e-08!216;UBERON:0000178!4.67e-08!15;UBERON:0000179!4.67e-08!15;UBERON:0000463!4.67e-08!15;UBERON:0002384!6.41e-08!375;UBERON:0002204!1.00e-07!167;UBERON:0000479!9.19e-07!787 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;5.20e-18;15!UBERON:0000179;5.20e-18;15!UBERON:0000463;5.20e-18;15!UBERON:0002390;5.05e-07;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,1.88e-47,98;UBERON:0003061,1.88e-47,98;UBERON:0002193,9.67e-44,108;UBERON:0002371,5.88e-36,76;UBERON:0001474,1.47e-32,82;UBERON:0002405,4.10e-29,93;UBERON:0004765,9.87e-29,90;UBERON:0001434,8.16e-25,100;UBERON:0000178,3.97e-18,15;UBERON:0000179,3.97e-18,15;UBERON:0000463,3.97e-18,15;UBERON:0003081,6.05e-18,203;UBERON:0002384,5.19e-14,371;UBERON:0002204,1.20e-11,167;UBERON:0000926,3.70e-07,315;UBERON:0004120,3.70e-07,315;UBERON:0006603,3.70e-07,315 | |||
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| |||
|short_description=p3@LRRK2 | |||
}} |
Revision as of 22:34, 10 September 2013
Short description: | p3@LRRK2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_LRRK2_5end |
Coexpression cluster: | C2_Eosinophils_Neutrophils_CD14_Whole_Basophils_Peripheral_Mast |
Association with transcript: | 0bp_to_ENST00000298910_5end |
EntrezGene: | LRRK2 |
HGNC: | 18618 |
UniProt: | Q5S007 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 1.88e-47 | 98 |
blood island | 1.88e-47 | 98 |
hemolymphoid system | 9.67e-44 | 108 |
bone marrow | 5.88e-36 | 76 |
bone element | 1.47e-32 | 82 |
immune system | 4.10e-29 | 93 |
skeletal element | 9.87e-29 | 90 |
skeletal system | 8.16e-25 | 100 |
blood | 3.97e-18 | 15 |
haemolymphatic fluid | 3.97e-18 | 15 |
organism substance | 3.97e-18 | 15 |
lateral plate mesoderm | 6.05e-18 | 203 |
connective tissue | 5.19e-14 | 371 |
musculoskeletal system | 1.20e-11 | 167 |
mesoderm | 3.70e-07 | 315 |
mesoderm-derived structure | 3.70e-07 | 315 |
presumptive mesoderm | 3.70e-07 | 315 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.