FFCP PHASE1:Hg19::chr12:40618463..40618492,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=120892 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18618 | |||
|TSSclassifier=weak | |||
|UniProt=E9PC85,Q17RV3,Q5S007 | |||
|association_with_transcript=-320bp_to_ENST00000343742,NM_198578,uc001rmg.3_5end | |||
|coexpression_cluster_id=C26 | |||
|description=CAGE_peak_4_at_LRRK2_5end | |||
|id=chr12:40618463..40618492,+ | |||
|ontology_enrichment_celltype=CL:0002057!2.55e-22!42;CL:0000860!1.63e-19!45;CL:0000766!4.20e-17!76;CL:0002194!9.14e-17!63;CL:0000576!9.14e-17!63;CL:0000040!9.14e-17!63;CL:0000559!9.14e-17!63;CL:0002009!2.82e-16!65;CL:0000557!3.59e-13!71;CL:0000839!4.66e-13!70;CL:0000763!1.78e-07!112;CL:0000049!1.78e-07!112;CL:0000738!4.56e-07!140 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.36e-48;33!CL:0002057;1.36e-48;33!CL:0000473;6.14e-33;39!CL:0000234;6.14e-33;39!CL:0000576;6.43e-30;48!CL:0000766;1.05e-16;69!CL:0000763;1.96e-08;100 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,1.58e-46,42;CL:0002057,1.58e-46,42;CL:0000473,1.64e-39,48;CL:0000234,1.64e-39,48;CL:0000766,3.94e-35,72;CL:0002194,3.20e-34,59;CL:0000576,3.20e-34,59;CL:0000040,3.20e-34,59;CL:0000559,3.20e-34,59;CL:0002009,8.54e-33,61;CL:0000839,1.32e-29,66;CL:0000557,5.02e-29,67;CL:0000763,6.23e-20,108;CL:0000049,6.23e-20,108;CL:0000738,1.19e-15,136;CL:0002087,4.25e-14,115;CL:0002031,3.15e-12,120;CL:0000037,9.73e-11,168;CL:0002032,3.85e-10,161;CL:0000837,3.85e-10,161;CL:0000988,1.06e-09,177 | |||
|ontology_enrichment_development_v019=CL:0002057;7.16e-34;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!5.68e-27!115;UBERON:0002390!4.83e-17!102;UBERON:0003061!4.83e-17!102;UBERON:0001049!8.66e-15!57;UBERON:0005068!8.66e-15!57;UBERON:0006241!8.66e-15!57;UBERON:0007135!8.66e-15!57;UBERON:0002193!1.53e-14!112;UBERON:0002780!3.19e-13!41;UBERON:0001890!3.19e-13!41;UBERON:0006240!3.19e-13!41;UBERON:0001893!3.98e-13!34;UBERON:0002020!8.04e-13!34;UBERON:0003528!8.04e-13!34;UBERON:0002371!1.15e-12!80;UBERON:0004765!1.34e-12!101;UBERON:0001434!1.34e-12!101;UBERON:0003080!1.43e-12!42;UBERON:0001869!1.63e-12!32;UBERON:0002791!1.75e-12!33;UBERON:0002619!7.06e-12!22;UBERON:0001474!1.81e-11!86;UBERON:0001950!4.63e-11!20;UBERON:0002616!6.01e-11!59;UBERON:0000467!3.41e-10!625;UBERON:0000956!4.66e-10!25;UBERON:0000203!4.66e-10!25;UBERON:0000480!4.78e-10!626;UBERON:0002346!1.54e-09!90;UBERON:0003075!2.81e-09!86;UBERON:0007284!2.81e-09!86;UBERON:0000955!2.92e-09!69;UBERON:0006238!2.92e-09!69;UBERON:0001017!5.72e-09!82;UBERON:0000468!2.01e-08!659;UBERON:0000062!2.64e-08!511;UBERON:0005743!3.31e-08!86;UBERON:0002050!5.37e-08!605;UBERON:0005423!5.37e-08!605;UBERON:0000479!6.49e-08!787;UBERON:0000923!1.04e-07!604;UBERON:0005291!1.04e-07!604;UBERON:0006598!1.04e-07!604;UBERON:0002532!1.04e-07!604;UBERON:0002405!1.35e-07!115;UBERON:0000033!1.47e-07!123;UBERON:0000073!1.70e-07!94;UBERON:0001016!1.70e-07!94;UBERON:0000922!2.31e-07!612;UBERON:0000153!2.79e-07!129;UBERON:0007811!2.79e-07!129;UBERON:0002204!4.98e-07!167 | |||
|ontology_enrichment_uberon_v019=UBERON:0001950;1.00e-23;20!UBERON:0002619;2.78e-21;22!UBERON:0001869;4.17e-19;32!UBERON:0001893;1.51e-18;34!UBERON:0000956;2.50e-18;25!UBERON:0000203;2.50e-18;25!UBERON:0002791;2.74e-17;32!UBERON:0003528;3.86e-16;34!UBERON:0002020;3.86e-16;34!UBERON:0002780;1.25e-11;41!UBERON:0001890;1.25e-11;41!UBERON:0000178;3.55e-11;15!UBERON:0000179;3.55e-11;15!UBERON:0000463;3.55e-11;15!UBERON:0000200;2.83e-09;6!UBERON:0000073;1.02e-08;53!UBERON:0002616;1.02e-08;53!UBERON:0001871;5.40e-08;6!UBERON:0001872;6.31e-08;5!UBERON:0002021;5.06e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,3.23e-34,98;UBERON:0003061,3.23e-34,98;UBERON:0002193,6.61e-30,108;UBERON:0002371,3.98e-26,76;UBERON:0001950,5.16e-24,20;UBERON:0001474,1.62e-23,82;UBERON:0001869,2.39e-22,32;UBERON:0002619,1.53e-21,22;UBERON:0002405,5.44e-21,93;UBERON:0001893,9.49e-21,34;UBERON:0004765,1.38e-20,90;UBERON:0002791,6.44e-20,32;UBERON:0001434,6.45e-19,100;UBERON:0000956,1.48e-18,25;UBERON:0000203,1.48e-18,25;UBERON:0003528,1.77e-18,34;UBERON:0002020,1.77e-18,34;UBERON:0007023,3.30e-18,114;UBERON:0002780,3.54e-18,41;UBERON:0001890,3.54e-18,41;UBERON:0003080,3.54e-18,41;UBERON:0006240,3.54e-18,41;UBERON:0001049,2.62e-16,56;UBERON:0005068,2.62e-16,56;UBERON:0006241,2.62e-16,56;UBERON:0007135,2.62e-16,56;UBERON:0000073,7.17e-16,53;UBERON:0002616,7.17e-16,53;UBERON:0001017,2.86e-12,81;UBERON:0000955,6.12e-12,68;UBERON:0006238,6.12e-12,68;UBERON:0003081,6.64e-12,203;UBERON:0000178,3.87e-11,15;UBERON:0000179,3.87e-11,15;UBERON:0000463,3.87e-11,15;UBERON:0003056,1.61e-10,61;UBERON:0001016,2.13e-10,89;UBERON:0003075,3.46e-10,82;UBERON:0007284,3.46e-10,82;UBERON:0002346,1.96e-09,86;UBERON:0000200,2.09e-09,6;UBERON:0002204,4.55e-09,167;UBERON:0001872,4.43e-08,5;UBERON:0001871,6.27e-08,6;UBERON:0002050,9.58e-08,564;UBERON:0010371,1.47e-07,104;UBERON:0005423,1.56e-07,581;UBERON:0000923,1.99e-07,560;UBERON:0010316,1.99e-07,560;UBERON:0005291,1.99e-07,560;UBERON:0006598,1.99e-07,560;UBERON:0010317,1.99e-07,560;UBERON:0002532,1.99e-07,560;UBERON:0002021,3.83e-07,5;UBERON:0000922,4.84e-07,592 | |||
|phase1_expression=0,1.07050261945492,0,0,0,0.872338524100369,0,0.631719873426831,0.261185628199839,0,0,0,0,0.123766352960047,0,0,0.602694528023977,0,0,0,0,0,0,0,0.125542639594803,0.152826811495903,0.410502947249729,0.157421562627358,0.393364276848904,0.767658796194425,0.619264493264304,0,0.6024118375565,0.369754010166788,0,0,0.293600439334847,2.21598163412751,1.00272223735071,0.434021741431704,2.01523926815932,0.32389366601898,1.54545340580512,2.32637182047304,3.40088349319928,2.91100873425379,3.0215774797739,2.05583944010913,1.85823822537062,5.75384784644301,3.33008918487831,4.7296445977717,1.37898272294647,0,2.70852973188684,1.50593871634084,1.09162460023138,1.79778787556068,2.44867113896722,0.962787081228281,1.91801137739712,4.28806690242731,5.98390972864896,4.68847225585964,1.7412554317715,3.97169657283798,0.622822248995575,3.51748131359441,2.08593167368081,3.04064382587163,3.02699751316684,1.10483290796269,1.26584954976354,0.211255286311942,0.425208599930087,0.209658645508376,0.673971786878971,1.20141514273205,1.44653028027372,0,0.39783335439818,0,0,0,0,0,0,0.574752439954483,0,0,0,0.587237189370939,0.382273228125229,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150575119077773,0.127986611154418,0,0.236777252044017,0,0,0,0,0,0,0,0,0.50133791063589,0.434539556882471,0,0,0,0,0,0.392937226493138,0,0.741568885568859,0,0.174129737299267,0,0.238490624305342,0,1.11437250398869,0.39752481473341,0,0.694281003215189,0,0.838998872419812,0.550236083880135,0.208994966536811,0,0,0,0,0,0,0.367663080345869,0,0.0892997282840798,0.44905874525234,0.337834441449967,0,0,0.183201743930407,5.27121669744253,3.87780264148325,0,0,0,0.397227542439656,0,0.354668382198357,0,0,0,0,0,0.163461903113459,0,0,0,0,0,0,0.23486899728753,0,0,0.204154171254893,0.368502951935304,0.723280468230358,0,0.989067717114227,0.910161361938026,0,0.336672227908132,0.375355559615893,0.277064115484183,0.438977620880838,0,0.45071417671979,0,0.358779271377724,0.427114777637135,0.423863802319124,0,0.309157587715317,0.257640540045629,0,0.168776332241266,0.194874010322397,0,0.368199594569197,0.80823028409406,0.355009592516614,0.10075209822764,0.169560592310488,0,0,0,0,0,0,0,0,0.36497735907583,1.56449532329816,0,0,0,0,0,0,0,0,0,0,0.134831308160164,0,0,0,0,0,0,0,0,1.18157981336281,0,0,0,0,0,0.100528972411631,0,0,0,0,0,0.117408694235822,0,0,0,0,0,0.738651018262192,0.234004265139238,0.297262324577456,0,0.16798212819886,0.425325291727159,0,0.290633938513962,0.383382679165211,0,0,0,0,0,0.126995788584338,0,0,0,0.102827492703324,0,0,0,0.43596006883328,0.07333828582095,0,0,0.845302752556,0,0,0,0,0.266422179016099,0.285955987316295,0,0,0.325736184293735,0.355391948742546,0,0.602878754119172,0,0.199945982364114,0,0.502257091432126,0,0,0,0,0,0.410952645100767,0.358121926479791,0,0.394061520403854,0,0,0,1.30139853857622,0,0,0,5.99205619157746,0,4.14415513436035,0.12269149171914,0,0,0.207970861530807,0,0.157702415033935,0.585707074963566,0,0,1.03473071292505,0,0,0.347534457872331,0,0,0.413536052245775,1.07857100409308,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0.154209693802656,0,0.410635780069046,0,0,0,0,0.184161977871793,0.114814448164607,0,0.131124414959424,0,0.15403067420883,0,0,0.211103257785751,0,0,0,0,0,0,0,0.831076008928724,0.223874754722178,0,0,0,0,0,0.824328093181778,0,0.082509499920588,0,0,0,0.290012154876366,0,0,0.137836572484531,0.214840489736547,0.290033387828457,0,0,0,0,0.510450849978337,0.10115778085555,0,0.62962469366128,0.6970372701606,0.616067160352178,0,0,0,0.143124886741991,0,0,0,0,0,0,0.78494864019923,0.539617372749944,0,0.117812402345686,0.202182481573316,1.58510321173008,0,0,0,0,0,0.707027159768564,1.13008116620243,0,0,0,0,0.655894752046633,0,0,0,0.143411352204052,0,0,0.709522128141196,0.422215270595328,0.987884678879706,0.379473173765715,0,0.0962221127255121,0,0,0.847294206991012,0,0,0,0,2.02979043692868,1.52927441428475,3.41788312304498,1.19115887728894,0.822724546172388,2.59389324477087,2.70015718619057,3.96562588147135,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.425846237690326,0,0,0.223676107892416,0.500547425135725,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,3.97659059106519,1.1253553312841,0,0,0.211125408127993,0.796991953004279,0.276283915531148,0,0.306806047506464,0.615424027305347,0,0,0.179021174675609,0,0.295930216910801,2.3948309234694,1.11136990144637,0.969332746095218,1.02044907978036,0,0,0.174919999992391,0,0,0,0,0,0,0,0,0.964771509003264,1.52581736317083,0.663475559587348,0.591095237907095,1.31631238292384,0,0.139423744278603,0.230850775511391,0,0,0,0.108647371922008,0,0.183195186803725,0.533034776018635,0,0.156980256395025,0,0,0,0,0,0,0.421996129056054,0,0,0,0,0.442287822516696,0,0.296521128680622,0,0,0.876214728748802,0,0.234264445725339,0,0,0,0.394584402849391,0,0,0.379119477770928,3.15679180770434,0.518440956986236,0,0,0.313932918407225,0,0,0,0,0,0,0.34945333648406,0,0,0,0,0.581934098930517,0.794305140223502,0.225980740780532,0.137041924646751,0,3.22885059374981,0.195551382734803,0.0801588202515337,0.426905989478705,0,0.1440904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| |||
|short_description=p4@LRRK2 | |||
}} |
Revision as of 12:59, 11 January 2014
Short description: | p4@LRRK2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_LRRK2_5end |
Coexpression cluster: | C26_Eosinophils_Neutrophils_CD14_CD14CD16_Basophils_Monocytederived_Whole |
Association with transcript: | -320bp_to_ENST00000343742, NM_198578, uc001rmg.3_5end |
EntrezGene: | LRRK2 |
HGNC: | 18618 |
UniProt: | E9PC85Q17RV3Q5S007 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 1.58e-46 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.58e-46 | 42 |
defensive cell | 1.64e-39 | 48 |
phagocyte | 1.64e-39 | 48 |
myeloid leukocyte | 3.94e-35 | 72 |
monopoietic cell | 3.20e-34 | 59 |
monocyte | 3.20e-34 | 59 |
monoblast | 3.20e-34 | 59 |
promonocyte | 3.20e-34 | 59 |
macrophage dendritic cell progenitor | 8.54e-33 | 61 |
myeloid lineage restricted progenitor cell | 1.32e-29 | 66 |
granulocyte monocyte progenitor cell | 5.02e-29 | 67 |
myeloid cell | 6.23e-20 | 108 |
common myeloid progenitor | 6.23e-20 | 108 |
leukocyte | 1.19e-15 | 136 |
nongranular leukocyte | 4.25e-14 | 115 |
hematopoietic lineage restricted progenitor cell | 3.15e-12 | 120 |
hematopoietic stem cell | 9.73e-11 | 168 |
hematopoietic oligopotent progenitor cell | 3.85e-10 | 161 |
hematopoietic multipotent progenitor cell | 3.85e-10 | 161 |
hematopoietic cell | 1.06e-09 | 177 |