FFCP PHASE1:Hg19::chr3:147114993..147115013,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=84107|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=20393|TSSclassifier=S|UniProt=|association_with_transcript=-20bp_to_ENST00000493664,uc003ewc.1_5end|coexpression_cluster_id=C711|description=CAGE_peak_5_at_ZIC4_5end|id=chr3:147114993..147115013,-|ontology_enrichment_celltype=CL:0002559!4.73e-14!4;CL:0000128!1.11e-11!7;CL:0000126!1.11e-11!7;CL:0000127!1.11e-11!7;CL:0002453!1.11e-11!7;CL:0000346!3.41e-11!3;CL:1000428!3.41e-11!3;CL:0000708!4.16e-11!3;CL:0002603!6.38e-11!3;CL:0000064!8.29e-11!3;CL:0005012!8.29e-11!3;CL:0000067!8.29e-11!3;CL:0002304!8.29e-11!3;CL:0002590!2.25e-10!3;CL:0002575!3.39e-08!2;CL:0002549!9.27e-08!2;CL:0000133!2.38e-07!59|ontology_enrichment_celltype_v019=CL:0000346;1.00e-33;3!CL:1000428;1.00e-33;3!CL:0002575;9.50e-24;2!CL:0002559;1.58e-20;5!CL:0000708;5.38e-16;3!CL:0000064;1.91e-15;3!CL:0000067;1.91e-15;3!CL:0005012;1.91e-15;3!CL:0002304;1.91e-15;3!CL:0002603;1.91e-15;3!CL:0000669;2.27e-12;4!CL:0000128;3.91e-07;7!CL:0000126;3.91e-07;7!CL:0000127;3.91e-07;7!CL:0002549;7.19e-07;2|ontology_enrichment_celltype_v019_2=CL:0000346,7.56e-34,3;CL:1000428,7.56e-34,3;CL:0002575,8.98e-24,2;CL:0002559,1.33e-20,5;CL:0000708,4.99e-16,3;CL:0002603,1.65e-15,3;CL:0000064,2.76e-15,3;CL:0000067,2.76e-15,3;CL:0005012,2.76e-15,3;CL:0002304,2.76e-15,3;CL:0000669,2.20e-12,4;CL:0000133,3.72e-08,59;CL:0000128,3.68e-07,7;CL:0000126,3.68e-07,7;CL:0000127,3.68e-07,7;CL:0002453,3.68e-07,7;CL:0002549,7.61e-07,2|ontology_enrichment_development_v019=UBERON:0006215;1.47e-34;3!UBERON:0005425;3.26e-12;1|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!1.54e-44!82;UBERON:0002616!1.98e-42!59;UBERON:0005743!4.61e-42!86;UBERON:0000073!1.15e-39!94;UBERON:0001016!1.15e-39!94;UBERON:0000955!1.32e-39!69;UBERON:0006238!1.32e-39!69;UBERON:0003075!1.08e-37!86;UBERON:0007284!1.08e-37!86;UBERON:0002346!1.28e-35!90;UBERON:0001049!6.09e-35!57;UBERON:0005068!6.09e-35!57;UBERON:0006241!6.09e-35!57;UBERON:0007135!6.09e-35!57;UBERON:0004121!5.62e-33!169;UBERON:0000924!5.89e-32!173;UBERON:0006601!5.89e-32!173;UBERON:0003076!3.26e-29!15;UBERON:0003057!3.26e-29!15;UBERON:0004732!5.73e-29!13;UBERON:0000033!1.75e-28!123;UBERON:0000153!1.01e-26!129;UBERON:0007811!1.01e-26!129;UBERON:0004733!5.67e-26!12;UBERON:0002028!5.67e-26!12;UBERON:0007277!5.67e-26!12;UBERON:0002200!1.04e-22!11;UBERON:0006876!1.04e-22!11;UBERON:0002680!1.36e-22!9;UBERON:0001895!1.36e-22!9;UBERON:0010092!1.36e-22!9;UBERON:0002037!1.34e-20!6;UBERON:0006215!1.34e-20!6;UBERON:0003056!3.49e-18!61;UBERON:0005284!1.97e-16!5;UBERON:0000119!2.30e-15!312;UBERON:0002780!2.03e-14!41;UBERON:0001890!2.03e-14!41;UBERON:0006240!2.03e-14!41;UBERON:0002073!4.73e-14!4;UBERON:0005086!4.73e-14!4;UBERON:0002791!4.76e-14!33;UBERON:0003080!5.39e-14!42;UBERON:0001893!1.48e-13!34;UBERON:0002020!1.50e-13!34;UBERON:0003528!1.50e-13!34;UBERON:0000488!1.84e-13!4;UBERON:0000483!8.07e-13!309;UBERON:0007023!1.45e-12!115;UBERON:0002420!1.03e-11!9;UBERON:0007245!1.03e-11!9;UBERON:0010009!1.03e-11!9;UBERON:0010011!1.03e-11!9;UBERON:0000454!1.03e-11!9;UBERON:0002308!1.19e-11!9;UBERON:0000125!1.19e-11!9;UBERON:0000412!3.41e-11!3;UBERON:0001992!3.41e-11!3;UBERON:0003210!4.16e-11!3;UBERON:0009663!7.79e-11!7;UBERON:0001778!8.29e-11!3;UBERON:0001775!8.29e-11!3;UBERON:0000475!1.70e-10!365;UBERON:0001869!1.74e-10!32;UBERON:0007625!5.06e-10!11;UBERON:0002298!1.26e-09!8;UBERON:0005085!2.23e-09!29;UBERON:0002203!5.64e-09!6;UBERON:0001768!5.64e-09!6;UBERON:0000064!7.16e-09!219;UBERON:0003947!9.27e-08!2;UBERON:0005629!9.27e-08!2;UBERON:0005358!9.27e-08!2;UBERON:0001886!9.27e-08!2;UBERON:0004086!9.27e-08!2;UBERON:0005282!9.27e-08!2;UBERON:0005281!9.27e-08!2;UBERON:0001801!1.02e-07!14;UBERON:0002360!1.96e-07!2;UBERON:0000094!1.96e-07!2;UBERON:0007645!1.96e-07!2;UBERON:0001875!2.45e-07!2;UBERON:0006514!2.45e-07!2;UBERON:0005162!2.69e-07!2;UBERON:0000122!2.69e-07!2|ontology_enrichment_uberon_v019=UBERON:0002037;3.66e-46;6!UBERON:0004732;7.19e-41;13!UBERON:0000412;1.00e-33;3!UBERON:0001992;1.00e-33;3!UBERON:0004733;7.99e-33;12!UBERON:0002028;7.99e-33;12!UBERON:0002680;8.08e-31;9!UBERON:0001895;8.08e-31;9!UBERON:0002073;1.58e-20;5!UBERON:0006876;3.85e-16;11!UBERON:0003210;5.38e-16;3!UBERON:0001778;1.91e-15;3!UBERON:0001775;1.91e-15;3!UBERON:0000941;3.26e-12;1!UBERON:0001785;3.26e-12;1!UBERON:0002464;3.26e-12;1!UBERON:0004904;3.26e-12;1!UBERON:0001021;3.26e-12;1!UBERON:0000488;7.94e-12;4!UBERON:0002067;1.11e-11;9!UBERON:0005284;9.48e-10;5!UBERON:0010371;3.49e-08;31!UBERON:0002203;3.50e-08;6!UBERON:0001768;3.50e-08;6!UBERON:0002200;3.50e-08;6!UBERON:0001003;3.25e-07;15!UBERON:0007376;3.25e-07;15!UBERON:0005629;7.19e-07;2!UBERON:0005358;7.19e-07;2!UBERON:0001886;7.19e-07;2!UBERON:0004086;7.19e-07;2!UBERON:0005282;7.19e-07;2!UBERON:0005281;7.19e-07;2!UBERON:0003714;9.81e-07;2!UBERON:0005162;9.81e-07;2!UBERON:0000122;9.81e-07;2|ontology_enrichment_uberon_v019_2=UBERON:00020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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=84107 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=20393 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=-20bp_to_ENST00000493664,uc003ewc.1_5end | |||
|coexpression_cluster_id=C711 | |||
|description=CAGE_peak_5_at_ZIC4_5end | |||
|id=chr3:147114993..147115013,- | |||
|ontology_enrichment_celltype=CL:0002559!4.73e-14!4;CL:0000128!1.11e-11!7;CL:0000126!1.11e-11!7;CL:0000127!1.11e-11!7;CL:0002453!1.11e-11!7;CL:0000346!3.41e-11!3;CL:1000428!3.41e-11!3;CL:0000708!4.16e-11!3;CL:0002603!6.38e-11!3;CL:0000064!8.29e-11!3;CL:0005012!8.29e-11!3;CL:0000067!8.29e-11!3;CL:0002304!8.29e-11!3;CL:0002590!2.25e-10!3;CL:0002575!3.39e-08!2;CL:0002549!9.27e-08!2;CL:0000133!2.38e-07!59 | |||
|ontology_enrichment_celltype_v019=CL:0000346;1.00e-33;3!CL:1000428;1.00e-33;3!CL:0002575;9.50e-24;2!CL:0002559;1.58e-20;5!CL:0000708;5.38e-16;3!CL:0000064;1.91e-15;3!CL:0000067;1.91e-15;3!CL:0005012;1.91e-15;3!CL:0002304;1.91e-15;3!CL:0002603;1.91e-15;3!CL:0000669;2.27e-12;4!CL:0000128;3.91e-07;7!CL:0000126;3.91e-07;7!CL:0000127;3.91e-07;7!CL:0002549;7.19e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000346,7.56e-34,3;CL:1000428,7.56e-34,3;CL:0002575,8.98e-24,2;CL:0002559,1.33e-20,5;CL:0000708,4.99e-16,3;CL:0002603,1.65e-15,3;CL:0000064,2.76e-15,3;CL:0000067,2.76e-15,3;CL:0005012,2.76e-15,3;CL:0002304,2.76e-15,3;CL:0000669,2.20e-12,4;CL:0000133,3.72e-08,59;CL:0000128,3.68e-07,7;CL:0000126,3.68e-07,7;CL:0000127,3.68e-07,7;CL:0002453,3.68e-07,7;CL:0002549,7.61e-07,2 | |||
|ontology_enrichment_development_v019=UBERON:0006215;1.47e-34;3!UBERON:0005425;3.26e-12;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
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|short_description=p5@ZIC4 | |||
}} |
Revision as of 21:58, 12 September 2013
Short description: | p5@ZIC4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_ZIC4_5end |
Coexpression cluster: | C711_cerebellum_Pericytes_Fibroblast_Meningeal_spinal_Astrocyte_Hair |
Association with transcript: | -20bp_to_ENST00000493664, uc003ewc.1_5end |
EntrezGene: | ZIC4 |
HGNC: | 20393 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hair follicle dermal papilla cell | 7.56e-34 | 3 |
stem cell of epidermis | 7.56e-34 | 3 |
central nervous system pericyte | 8.98e-24 | 2 |
hair follicle cell | 1.33e-20 | 5 |
leptomeningeal cell | 4.99e-16 | 3 |
astrocyte of the cerebellum | 1.65e-15 | 3 |
ciliated cell | 2.76e-15 | 3 |
ciliated epithelial cell | 2.76e-15 | 3 |
multi-ciliated epithelial cell | 2.76e-15 | 3 |
non-pigmented ciliary epithelial cell | 2.76e-15 | 3 |
pericyte cell | 2.20e-12 | 4 |
neurectodermal cell | 3.72e-08 | 59 |
oligodendrocyte | 3.68e-07 | 7 |
macroglial cell | 3.68e-07 | 7 |
astrocyte | 3.68e-07 | 7 |
oligodendrocyte precursor cell | 3.68e-07 | 7 |
fibroblast of choroid plexus | 7.61e-07 | 2 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.