FFCP PHASE1:Hg19::chr12:52908517..52908524,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=not | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C207 | |||
|description=CAGE_peak_at_chr12:52908517..52908524,- | |||
|id=chr12:52908517..52908524,- | |||
|ontology_enrichment_celltype=CL:0002076!4.86e-32!43;CL:0000223!1.28e-21!59;CL:0002251!2.16e-18!21;CL:0002368!4.18e-18!13;CL:0000066!1.16e-16!254;CL:0002159!1.60e-14!13;CL:0000076!8.69e-13!62;CL:0000622!6.38e-11!5;CL:0002623!1.45e-10!3;CL:0002621!4.85e-10!3;CL:0002328!6.97e-10!3;CL:0000240!3.40e-09!6;CL:0000311!3.40e-09!6;CL:0000079!3.40e-09!6;CL:0000237!3.40e-09!6;CL:0000036!3.40e-09!6;CL:0000357!3.40e-09!6;CL:0000114!3.40e-09!6;CL:0000154!4.35e-09!6;CL:0002202!1.60e-08!9;CL:0002632!1.60e-08!9;CL:0000575!1.63e-07!2;CL:0002327!2.33e-07!4;CL:0000244!5.66e-07!4;CL:0000731!5.66e-07!4;CL:0000362!6.11e-07!8 | |||
|ontology_enrichment_celltype_v019=CL:0002076;5.51e-29;42!CL:0000622;1.13e-23;5!CL:0002623;2.61e-22;3!CL:0002251;8.33e-22;20!CL:0000240;4.27e-20;6!CL:0000311;4.27e-20;6!CL:0000079;4.27e-20;6!CL:0000237;4.27e-20;6!CL:0000154;9.04e-20;6!CL:0002368;2.67e-19;13!CL:0002159;1.56e-18;14!CL:0000575;2.40e-15;2!CL:0000312;4.57e-14;5!CL:0000362;1.43e-13;9!CL:0000150;3.02e-13;9!CL:0000307;1.55e-10;3!CL:0002621;1.55e-10;3!CL:0002336;1.02e-08;1!CL:0002261;1.02e-08;1!CL:0002170;1.02e-08;1!CL:0002252;2.46e-08;1!CL:0002202;1.15e-07;9!CL:0002632;1.15e-07;9!CL:0002077;3.20e-07;34 | |||
|ontology_enrichment_celltype_v019_2=CL:0002076,2.56e-35,42;CL:0000223,8.49e-25,58;CL:0000622,9.52e-24,5;CL:0002623,2.10e-22,3;CL:0002251,8.36e-22,20;CL:0000240,4.39e-20,6;CL:0000311,4.39e-20,6;CL:0000079,4.39e-20,6;CL:0000237,4.39e-20,6;CL:0000036,4.39e-20,6;CL:0000357,4.39e-20,6;CL:0000114,4.39e-20,6;CL:0000154,7.84e-20,6;CL:0002368,3.10e-19,13;CL:0002159,1.45e-18,14;CL:0000575,2.41e-15,2;CL:0000312,4.11e-14,5;CL:0000362,1.32e-13,9;CL:0000150,2.75e-13,9;CL:0000066,4.55e-12,253;CL:0000068,1.79e-10,3;CL:0000069,1.79e-10,3;CL:0000307,1.79e-10,3;CL:0000377,1.79e-10,3;CL:0002621,1.97e-10,3;CL:0000076,8.01e-10,63;CL:0002321,1.12e-08,250;CL:0002336,1.27e-08,1;CL:0002261,1.27e-08,1;CL:0002170,1.27e-08,1;CL:0002252,2.46e-08,1;CL:0002202,1.13e-07,9;CL:0002632,1.13e-07,9;CL:0002077,2.49e-07,34 | |||
|ontology_enrichment_development_v019=CL:0000357;4.27e-20;6!CL:0000114;4.27e-20;6!CL:0000223;2.35e-14;58!CL:0000377;1.55e-10;3 | |||
|ontology_enrichment_disease=DOID:1749!7.88e-19!14 | |||
|ontology_enrichment_disease_v019=DOID:3151;2.46e-08;1!DOID:3149;2.46e-08;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3151,1.59e-08,1;DOID:3149,1.59e-08,1 | |||
|ontology_enrichment_uberon=UBERON:0001004!2.85e-23!72;UBERON:0000166!1.61e-18!21;UBERON:0000161!6.12e-16!35;UBERON:0000165!1.07e-15!28;UBERON:0000930!1.07e-15!28;UBERON:0004119!1.56e-15!169;UBERON:0000925!1.56e-15!169;UBERON:0006595!1.56e-15!169;UBERON:0000065!1.27e-13!53;UBERON:0003102!1.37e-12!95;UBERON:0001444!6.47e-11!48;UBERON:0001949!4.85e-10!3;UBERON:0004815!6.97e-10!3;UBERON:0002031!6.97e-10!3;UBERON:0003729!1.00e-09!5;UBERON:0007196!1.19e-09!14;UBERON:0001558!1.19e-09!14;UBERON:0000974!1.87e-09!10;UBERON:0001007!2.26e-09!155;UBERON:0001555!2.26e-09!155;UBERON:0007026!2.26e-09!155;UBERON:0000072!3.41e-09!46;UBERON:0000365!3.68e-09!5;UBERON:0006562!7.28e-09!11;UBERON:0004807!1.82e-08!28;UBERON:0005178!3.32e-08!34;UBERON:0002224!3.32e-08!34;UBERON:0000344!4.30e-08!12;UBERON:0005181!6.60e-08!35;UBERON:0005910!1.22e-07!6;UBERON:0002185!1.68e-07!4;UBERON:0003408!2.11e-07!10;UBERON:0001911!2.33e-07!4;UBERON:0005333!2.33e-07!4;UBERON:0008425!2.33e-07!4;UBERON:0005311!2.33e-07!4;UBERON:0001042!4.04e-07!10;UBERON:0009145!4.04e-07!10;UBERON:0003343!5.31e-07!4;UBERON:0004785!5.31e-07!4;UBERON:0003126!5.48e-07!7;UBERON:0001005!5.48e-07!7 | |||
|ontology_enrichment_uberon_v019=UBERON:0000165;2.99e-19;28!UBERON:0000161;4.13e-13;19!UBERON:0000166;4.13e-13;19!UBERON:0001044;1.93e-11;6!UBERON:0003293;1.93e-11;6!UBERON:0003294;1.93e-11;6!UBERON:0010047;1.93e-11;6!UBERON:0003408;1.93e-11;6!UBERON:0000167;1.93e-11;6!UBERON:0001949;1.55e-10;3!UBERON:0001723;2.74e-10;3!UBERON:0001033;2.74e-10;3!UBERON:0007811;6.56e-10;52!UBERON:0000033;9.65e-10;50!UBERON:0003729;4.99e-09;13!UBERON:0001444;9.19e-09;48!UBERON:0000153;2.03e-08;54!UBERON:0001041;2.16e-08;14!UBERON:0001003;3.46e-08;15!UBERON:0007376;3.46e-08;15!UBERON:0000964;4.08e-08;4!UBERON:0010409;4.08e-08;4!UBERON:0010371;6.97e-08;31!UBERON:0001004;7.18e-08;65 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000166,1.00e-19,22;UBERON:0000165,1.27e-18,29;UBERON:0000930,1.27e-18,29;UBERON:0003102,7.26e-18,99;UBERON:0001004,3.28e-16,74;UBERON:0001444,9.64e-16,49;UBERON:0000161,9.32e-15,36;UBERON:0000033,1.55e-13,56;UBERON:0000153,4.85e-12,62;UBERON:0007811,4.85e-12,62;UBERON:0001044,1.74e-11,6;UBERON:0003293,1.74e-11,6;UBERON:0003294,1.74e-11,6;UBERON:0010047,1.74e-11,6;UBERON:0000167,1.74e-11,6;UBERON:0001723,1.79e-10,3;UBERON:0001033,1.79e-10,3;UBERON:0010056,1.79e-10,3;UBERON:0001949,1.97e-10,3;UBERON:0004119,1.55e-09,160;UBERON:0000925,1.55e-09,160;UBERON:0006595,1.55e-09,160;UBERON:0003729,5.33e-09,13;UBERON:0001003,3.31e-08,15;UBERON:0007376,3.31e-08,15;UBERON:0007383,3.31e-08,15;UBERON:0000964,4.08e-08,4;UBERON:0010409,4.08e-08,4;UBERON:0004348,4.08e-08,4;UBERON:0005427,4.08e-08,4;UBERON:0004121,1.50e-07,171;UBERON:0000924,1.50e-07,171;UBERON:0006601,1.50e-07,171;UBERON:0000065,2.47e-07,54;UBERON:0003408,4.46e-07,10;UBERON:0001007,5.92e-07,145;UBERON:0001555,5.92e-07,145;UBERON:0007026,5.92e-07,145 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.919421224478927,0.90361775633475,1.47901604066715,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.09288586487763,2.96627554227544,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.3082821564276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.15956511897978,2.18196896472668,0.860413786167011,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.85350742062426,4.49607013030478,5.2275065654048,2.12953423864618,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.335964256397719,0.283550194484773,0.985143749731331,1.16253575405585,0.383382679165211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.909382714338778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.40101294060657,2.3941057123333,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.45078319847478,0,0,0,0,0,0,0,0,0,1.32227932288782,0.960950336825531,5.35973392477253,1.0115778085555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.69421915631434,0,1.08890984861323,0,0.43050537267123,0,0.886860307073351,0.229723400206959,0,0,0,0,0,0,0,0,0,0,1.22520107990516,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.95497793895076,0,0.307160702099232,0,0,0,0,0.422250816255987,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.0241410345695,0,0,0,0,0,0,0,0,0,0,0,0,2.09135616417905,0.307801034015188,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.489961987071888,0.435296032902013,0,0,0,0,0,0.872901148395775,0,0.225980740780532,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.67717343799633,0,0,0,0,0.191915197319445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.249960815924213,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.617602894321944,0,0,0.192914038270915,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.139879507719444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.294443155503077,0.11796972334774,1.65085738669511,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.992422356778588,0,0.127762427639595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.48659396995644,2.21934020222135,1.38251932362818,0,0,0,0,0,0,0,0,0,0,0,0,0,0.971421986118279,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.892769693028288,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213233981900981,0,0.193766729508018,0.248298857183432,0,0,0,1.74173398317569,1.36893320434112,0.336760265072938,0.215166616178029,0.332660356546013,0.162806537221949,0,0,0,0,0,0.813792356631477,0,0,0 | |||
|short_description=p@chr12:52908517..52908524,- | |||
}} |
Revision as of 13:35, 11 January 2014
Short description: | p@chr12:52908517..52908524, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr12:52908517..52908524, - |
Coexpression cluster: | C207_Corneal_Keratinocyte_Esophageal_Mammary_Bronchial_Urothelial_Sebocyte |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
oral opening | 1.00e-19 | 22 |
mouth | 1.27e-18 | 29 |
stomodeum | 1.27e-18 | 29 |
surface structure | 7.26e-18 | 99 |
respiratory system | 3.28e-16 | 74 |
subdivision of head | 9.64e-16 | 49 |
orifice | 9.32e-15 | 36 |
head | 1.55e-13 | 56 |
anterior region of body | 4.85e-12 | 62 |
craniocervical region | 4.85e-12 | 62 |
saliva-secreting gland | 1.74e-11 | 6 |
gland of oral region | 1.74e-11 | 6 |
gland of foregut | 1.74e-11 | 6 |
oral gland | 1.74e-11 | 6 |
oral cavity | 1.74e-11 | 6 |
tongue | 1.79e-10 | 3 |
gustatory system | 1.79e-10 | 3 |
future tongue | 1.79e-10 | 3 |
gingival epithelium | 1.97e-10 | 3 |
endoderm-derived structure | 1.55e-09 | 160 |
endoderm | 1.55e-09 | 160 |
presumptive endoderm | 1.55e-09 | 160 |
mouth mucosa | 5.33e-09 | 13 |
skin epidermis | 3.31e-08 | 15 |
outer epithelium | 3.31e-08 | 15 |
enveloping layer of ectoderm | 3.31e-08 | 15 |
cornea | 4.08e-08 | 4 |
eye surface | 4.08e-08 | 4 |
optic eminence | 4.08e-08 | 4 |
corneal primordium | 4.08e-08 | 4 |
ectoderm-derived structure | 1.50e-07 | 171 |
ectoderm | 1.50e-07 | 171 |
presumptive ectoderm | 1.50e-07 | 171 |
respiratory tract | 2.47e-07 | 54 |
gland of gut | 4.46e-07 | 10 |
digestive system | 5.92e-07 | 145 |
digestive tract | 5.92e-07 | 145 |
primitive gut | 5.92e-07 | 145 |
Ontology term | p-value | n |
---|---|---|
skin squamous cell carcinoma | 1.59e-08 | 1 |
keratoacanthoma | 1.59e-08 | 1 |