FFCP PHASE1:Hg19::chr2:236715167..236715174,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport= | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=weak | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C819 | |||
|description=CAGE_peak_at_chr2:236715167..236715174,+ | |||
|id=chr2:236715167..236715174,+ | |||
|ontology_enrichment_celltype=CL:0000066!3.76e-39!254;CL:0000077!7.76e-16!19;CL:0000063!3.81e-09!578;CL:0000076!1.04e-08!62;CL:0000548!2.00e-08!679;CL:0000004!2.00e-08!679;CL:0000255!2.00e-08!679;CL:0000012!3.32e-08!682;CL:0002076!4.09e-07!43;CL:1000497!7.13e-07!18;CL:0002518!7.13e-07!18;CL:0000223!8.04e-07!59;CL:1000449!8.56e-07!16 | |||
|ontology_enrichment_celltype_v019=CL:0000077;8.89e-14;19!CL:1000449;1.90e-12;15!CL:1000507;3.50e-12;10!CL:1000494;3.50e-12;10!CL:0000239;5.27e-11;3!CL:1000615;5.27e-11;3!CL:0002306;5.27e-11;3!CL:1000497;5.83e-11;17!CL:0002518;5.83e-11;17!CL:0002681;2.26e-10;12!CL:0002584;2.26e-10;12!CL:0002202;4.78e-08;9!CL:0002632;4.78e-08;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000077,9.76e-14,19;CL:1000449,1.77e-12,15;CL:1000507,3.16e-12,10;CL:1000494,3.16e-12,10;CL:0000066,1.55e-11,253;CL:0000239,5.41e-11,3;CL:1000615,5.41e-11,3;CL:0002306,5.41e-11,3;CL:1000497,5.48e-11,17;CL:0002518,5.48e-11,17;CL:0002681,2.21e-10,12;CL:0002584,2.21e-10,12;CL:0002202,5.80e-08,9;CL:0002632,5.80e-08,9;CL:0000213,3.08e-07,58;CL:0000215,3.08e-07,58 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:305!5.52e-19!106;DOID:0050687!5.95e-18!143;DOID:162!2.80e-13!235;DOID:14566!1.53e-12!239;DOID:299!1.56e-09!25 | |||
|ontology_enrichment_disease_v019=DOID:5093;1.48e-08;4!DOID:1612;1.48e-08;4 | |||
|ontology_enrichment_disease_v019_2=DOID:5093,1.53e-08,4;DOID:1612,1.53e-08,4 | |||
|ontology_enrichment_uberon=UBERON:0005631!5.13e-14!14;UBERON:0000158!5.13e-14!14;UBERON:0000077!6.52e-11!130;UBERON:0001737!3.77e-10!9;UBERON:0004119!4.39e-10!169;UBERON:0000925!4.39e-10!169;UBERON:0006595!4.39e-10!169;UBERON:0004921!5.54e-09!129;UBERON:0004185!5.54e-09!129;UBERON:0001041!8.15e-09!98;UBERON:0003124!1.12e-08!7;UBERON:0001007!4.24e-08!155;UBERON:0001555!4.24e-08!155;UBERON:0007026!4.24e-08!155;UBERON:0000058!1.17e-07!26;UBERON:0008947!1.69e-07!38;UBERON:0003258!1.69e-07!38;UBERON:0005911!3.45e-07!82;UBERON:0000466!5.20e-07!126;UBERON:0000305!5.21e-07!7;UBERON:0009569!7.64e-07!113;UBERON:0000072!8.47e-07!46;UBERON:0004211!8.56e-07!16;UBERON:0001285!8.56e-07!16;UBERON:0007684!8.56e-07!16;UBERON:0003220!8.56e-07!16;UBERON:0004208!8.56e-07!16;UBERON:0001851!9.38e-07!16 | |||
|ontology_enrichment_uberon_v019=UBERON:0006555;1.90e-12;15!UBERON:0004819;1.90e-12;15!UBERON:0001285;1.90e-12;15!UBERON:0007684;1.90e-12;15!UBERON:0004211;3.50e-12;10!UBERON:0009773;3.50e-12;10!UBERON:0001231;3.50e-12;10!UBERON:0004810;3.50e-12;10!UBERON:0006853;5.27e-11;3!UBERON:0007685;5.27e-11;3!UBERON:0004134;5.27e-11;3!UBERON:0001225;2.26e-10;12!UBERON:0008987;2.26e-10;12!UBERON:0006554;1.63e-08;30!UBERON:0001008;1.63e-08;30!UBERON:0001851;2.54e-08;15!UBERON:0000353;2.54e-08;15!UBERON:0002113;1.06e-07;24!UBERON:0011143;1.06e-07;24 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004211,1.77e-12,15;UBERON:0009773,1.77e-12,15;UBERON:0001231,1.77e-12,15;UBERON:0001285,1.77e-12,15;UBERON:0007684,1.77e-12,15;UBERON:0004208,1.77e-12,15;UBERON:0004810,3.16e-12,10;UBERON:0006555,1.10e-11,16;UBERON:0004819,1.10e-11,16;UBERON:0006853,5.41e-11,3;UBERON:0007685,5.41e-11,3;UBERON:0004134,5.41e-11,3;UBERON:0001225,2.21e-10,12;UBERON:0008987,2.21e-10,12;UBERON:0009569,6.62e-09,112;UBERON:0001851,2.50e-08,15;UBERON:0000353,2.50e-08,15;UBERON:0002113,4.15e-07,26;UBERON:0003918,4.15e-07,26;UBERON:0011143,4.15e-07,26;UBERON:0005095,4.15e-07,26;UBERON:0007687,4.15e-07,26;UBERON:0005177,4.68e-07,101;UBERON:0006554,5.04e-07,47;UBERON:0001008,7.34e-07,48 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,2.45733936501509,8.37361401566913,1.96597234917155,0.791300934685361,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.919421224478927,1.204823675113,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383587685530591,0,0,0,0,0,0,0.221729397462564,0.087834785693126,0,1.45718115317017,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.402829317109147,0,0,0.367663080345869,0,0.0892997282840798,0,0,0,2.84779697870439,0,0,0,0.436094052142534,0,0,0,0,0,0,0,0,0,0,0.163461903113459,0.151357427644931,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.718618141816238,0,0,0,0,0,0,0.113432183160021,0,0,0,0.300091096084402,0,0,0,0,0.0974370051611986,0,0,0,0,0,0.169560592310488,0,0,0.286804595389004,0.243947412259191,0,0.116193942869518,0.207322110030741,0.504641701751257,0.36497735907583,0,0,0,0,0,0.473227200159376,0.168584690078102,0.723033089650446,0.220587945464788,0.653638332277218,0.237270619111097,0.404493924480493,0.392442930250692,1.53898862778556,0,0,2.4694440679884,0,0,0,0,0,0,0.343135620597051,0,0,0.100528972411631,0,0,0,0,0,0.939269553886573,0,0.462985512576611,0,2.37061319387782,2.57545848628462,0,0,0,0,0,0,0.179117045405697,0.290633938513962,0.383382679165211,0,0,0,0,0,0,0,0,0,0,0,0,0.112131084345361,0.43596006883328,0,0,0,0,0.26593811658487,0,0,0,0,0.285955987316295,0,0,0,0,0,0.301439377059586,0,0.499864955910285,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.271265023699736,0.207970861530807,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.606255142892519,1.66435439510497,0.604780586659361,0,0.153461973288062,0,0,0,0.160853921143607,0,0,0,0,0,0,0.241718899183244,0,0,0.114814448164607,0,0,2.70719767744447,0.15403067420883,1.56869953835371,0,0.316654886678627,0,0,0.647747748306418,0,0.270946437543853,0.501689773854853,1.52925763827023,4.15538004464362,0,0,0,0.256450125116389,0.656029291399411,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0.165284915360978,0,0,0,0,0,0,0,0,0,0,0,0,0.316379424718726,0.190630193923825,0,0,0,0,0,0,0,0,0,0.421258456238981,0,0,0,0.136499911407986,0.282810863907425,0,0,0,0,0,0,0,0.6196469961995,0.281695602532241,0.143411352204052,0.0982490410131212,0,0,0,0,0,0,0,0,2.17781969722645,0,0.86101074534246,1.68471475667626,0,0,0,0,0,0,0,0,0,0,0.320472213382419,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.33307196799782,0,0,0,0,0,0,0.71623345421307,1.48482340416319,0.614321404198464,0,0,0.111308705022906,0,0,0,0,0,0,0,0,0.179736702294654,0.179021174675609,0,0,0,0,0,0,0,0.260427761085233,0,0,0.568967241427498,0.254253650292766,0.472775363535873,0,0,0,0,0,0,0,0,0,0,0,0,0,0.69169171316418,0.269272933229316,1.19512109114209,0.957003479195758,0.366390373607449,0.533034776018635,0,0,0,0,0,0.167821586975843,0,0,0.210998064528027,0.326465616318295,0.424059214301822,0,0,0,0.611030144933625,0,0,0,0,0,0,0,0,0,0.394584402849391,0,0,0,0,0,0,0.330991955875499,0,0,0,0,0.520679215005393,0,0.174118413160805,0,0,0.19351266257817,0,0.328461828212837,0,0.0882561266915003,0,0.274083849293502,0,0,0,0.240476460754601,0,0.799238438328521,0.576361668616424,0,0,0,0.124252535565433,0,0,0.104602846312333,0,0,0,0,0,0.429765441419957,0,0,0,0,0,0,0,0,0.360299883542404,1.16495949527454,0.393915911536118,0,0.26961417541674,0.196854963029498,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293104467356165,0,0,0,0.855434189421647,0,0,0,0,0,0,0,0,0,0,0,0,0.157054096250234,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.90402606084398,0.406870733204662,0,0,0,0,0,0,0,0,0.385239660814607,0.643324774124777,0.782982875895635,0.906823702049089,4.39892701215285,0.97894681802587,0.895444205407437,8.64644052050722,1.31570429747224,0.176689145945881,3.47245268887647,1.01365464391844,0,1.72715170865599,0.607719912354764,0,0,0,0,0,0,0.211312123358627,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.235939446695481,0.183428598521679,0.693153996902029,0,0,0,0,0,0,0,0.163771917510097,0.591424344868181,0,0,0,0,0,0,0,0,0.255524855279191,0,0,0,0,0.0887023701626388,0,0,0,0,0.118193840883968,0.111231401892069,0,0,0.560544326627578,0,0.215927591218621,0,0,0,0.348724276104376,0,0,0.207216164163037,0,0,0.430227358820278,0,0,0,0.22910686854405,0,0,0.111855431797792,0.196300467230486,0.243835849964539,0,0,0,0,0.233939463462106,0,0,0,0,0.150962843566674,0,0,0,0,0.235676547101626,0,0,0,0.169927114687817,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109265571963696,0,0.101988829741982,0,0.18378979906969,0.50141507858475,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0898252021065869,0,0,0,0,0,0 | |||
|short_description=p@chr2:236715167..236715174,+ | |||
}} |
Revision as of 09:22, 21 January 2014
Short description: | p@chr2:236715167..236715174, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr2:236715167..236715174, + |
Coexpression cluster: | C819_Alveolar_MCF7_mesothelioma_endometrioid_signet_Renal_gastric |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesothelial cell | 9.76e-14 | 19 |
epithelial cell of nephron | 1.77e-12 | 15 |
kidney tubule cell | 3.16e-12 | 10 |
nephron tubule epithelial cell | 3.16e-12 | 10 |
epithelial cell | 1.55e-11 | 253 |
brush border epithelial cell | 5.41e-11 | 3 |
kidney cortex tubule cell | 5.41e-11 | 3 |
epithelial cell of proximal tubule | 5.41e-11 | 3 |
kidney cell | 5.48e-11 | 17 |
kidney epithelial cell | 5.48e-11 | 17 |
kidney cortical cell | 2.21e-10 | 12 |
renal cortical epithelial cell | 2.21e-10 | 12 |
epithelial cell of tracheobronchial tree | 5.80e-08 | 9 |
epithelial cell of lower respiratory tract | 5.80e-08 | 9 |
lining cell | 3.08e-07 | 58 |
barrier cell | 3.08e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
nephron epithelium | 1.77e-12 | 15 |
renal tubule | 1.77e-12 | 15 |
nephron tubule | 1.77e-12 | 15 |
nephron | 1.77e-12 | 15 |
uriniferous tubule | 1.77e-12 | 15 |
nephrogenic mesenchyme | 1.77e-12 | 15 |
nephron tubule epithelium | 3.16e-12 | 10 |
excretory tube | 1.10e-11 | 16 |
kidney epithelium | 1.10e-11 | 16 |
renal cortex tubule | 5.41e-11 | 3 |
region of nephron tubule | 5.41e-11 | 3 |
proximal tubule | 5.41e-11 | 3 |
cortex of kidney | 2.21e-10 | 12 |
renal parenchyma | 2.21e-10 | 12 |
subdivision of trunk | 6.62e-09 | 112 |
cortex | 2.50e-08 | 15 |
parenchyma | 2.50e-08 | 15 |
kidney | 4.15e-07 | 26 |
kidney mesenchyme | 4.15e-07 | 26 |
upper urinary tract | 4.15e-07 | 26 |
kidney rudiment | 4.15e-07 | 26 |
kidney field | 4.15e-07 | 26 |
trunk region element | 4.68e-07 | 101 |
urinary system structure | 5.04e-07 | 47 |
renal system | 7.34e-07 | 48 |
Ontology term | p-value | n |
---|---|---|
thoracic cancer | 1.53e-08 | 4 |
breast cancer | 1.53e-08 | 4 |