FFCP PHASE1:Hg19::chr1:218519119..218519130,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=7042|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=11768|TSSclassifier=N|UniProt=|association_with_transcript=-260bp_to_uc001hll.2,uc001hlm.2,uc001hln.2,uc001hlo.2,uc010pue.1_5end|coexpression_cluster_id=C927|description=CAGE_peak_16_at_TGFB2_5end|id=chr1:218519119..218519130,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=CL:0000064;1.59e-17;3!CL:0000067;1.59e-17;3!CL:0005012;1.59e-17;3!CL:0002304;1.59e-17;3!CL:0002549;1.01e-11;2!CL:0000708;1.93e-08;3!CL:0000222;4.17e-07;1!CL:0000306;9.51e-07;4!CL:0002222;9.51e-07;4!CL:0002224;9.51e-07;4|ontology_enrichment_celltype_v019_2=CL:0000064,2.95e-17,3;CL:0000067,2.95e-17,3;CL:0005012,2.95e-17,3;CL:0002304,2.95e-17,3;CL:0002549,9.06e-12,2;CL:0000708,2.20e-08,3;CL:0000511,5.57e-07,1;CL:0002625,5.57e-07,1;CL:0000216,5.57e-07,1;CL:0000306,8.77e-07,4;CL:0002222,8.77e-07,4;CL:0002224,8.77e-07,4|ontology_enrichment_development_v019=UBERON:0000358;4.17e-07;1|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=DOID:3571,8.27e-07,1|ontology_enrichment_uberon=UBERON:0000119!1.07e-11!312;UBERON:0000475!1.33e-10!365;UBERON:0000477!1.61e-10!286;UBERON:0000483!1.84e-10!309;UBERON:0000481!5.33e-10!347;UBERON:0004111!1.24e-09!241;UBERON:0000025!2.89e-08!194;UBERON:0002200!6.63e-08!11;UBERON:0006876!6.63e-08!11;UBERON:0005743!9.84e-08!86;UBERON:0000033!1.56e-07!123;UBERON:0003075!1.77e-07!86;UBERON:0007284!1.77e-07!86;UBERON:0000073!2.06e-07!94;UBERON:0001016!2.06e-07!94;UBERON:0001017!2.26e-07!82;UBERON:0002346!3.61e-07!90;UBERON:0004121!4.28e-07!169;UBERON:0000153!4.49e-07!129;UBERON:0007811!4.49e-07!129;UBERON:0000924!6.10e-07!173;UBERON:0006601!6.10e-07!173|ontology_enrichment_uberon_v019=UBERON:0000488;1.70e-22;4!UBERON:0007625;5.57e-18;11!UBERON:0001778;1.59e-17;3!UBERON:0001775;1.59e-17;3!UBERON:0006876;1.81e-17;11!UBERON:0002203;4.65e-15;6!UBERON:0001768;4.65e-15;6!UBERON:0002200;4.65e-15;6!UBERON:0001801;5.28e-14;14!UBERON:0005629;1.01e-11;2!UBERON:0005358;1.01e-11;2!UBERON:0001886;1.01e-11;2!UBERON:0004086;1.01e-11;2!UBERON:0005282;1.01e-11;2!UBERON:0005281;1.01e-11;2!UBERON:0000019;3.69e-10;19!UBERON:0000047;3.69e-10;19!UBERON:0004088;3.69e-10;19!UBERON:0010230;3.69e-10;19!UBERON:0000970;1.27e-09;20!UBERON:0002104;3.92e-09;21!UBERON:0001456;3.92e-09;21!UBERON:0003210;1.93e-08;3!UBERON:0001280;2.27e-08;3!UBERON:0004647;2.27e-08;3!UBERON:0000020;2.76e-08;23!UBERON:0002114;4.22e-08;2!UBERON:0001032;6.48e-08;24!UBERON:0004456;6.48e-08;24!UBERON:0002294;7.99e-08;7!UBERON:0001173;7.99e-08;7!UBERON:0010371;1.24e-07;31!UBERON:0001282;4.17e-07;1!UBERON:0009842;4.17e-07;1!UBERON:0003704;4.17e-07;1!UBERON:0001171;4.17e-07;1!UBERON:0001172;4.17e-07;1!UBERON:0010077;9.51e-07;4!UBERON:0005389;9.51e-07;4!UBERON:0000484;9.51e-07;4!UBERON:0000965;9.51e-07;4!UBERON:0001803;9.51e-07;4|ontology_enrichment_uberon_v019_2=UBERON:0000488,6.06e-22,4;UBERON:0007625,1.01e-17,11;UBERON:0001778,2.95e-17,3;UBERON:0001775,2.95e-17,3;UBERON:0006876,3.35e-17,11;UBERON:0002203,1.07e-14,6;UBERON:0001768,1.07e-14,6;UBERON:0002200,1.07e-14,6;UBERON:0001801,8.40e-14,14;UBERON:0005629,9.06e-12,2;UBERON:0005358,9.06e-12,2;UBERON:0001886,9.06e-12,2;UBERON:0004086,9.06e-12,2;UBERON:0005282,9.06e-12,2;UBERON:0005281,9.06e-12,2;UBERON:0002294,2.91e-10,9;UBERON:0001173,2.91e-10,9;UBERON:0004912,2.91e-10,9;UBERON:0000019,1.75e-09,20;UBERON:0000047,1.75e-09,20;UBERON:0010312,1.75e-09,20;UBERON:0004088,1.75e-09,20;UBERON:0010230,1.75e-09,20;UBERON:0003072,1.75e-09,20;UBERON:0004128,1.75e-09,20;UBERON:0003071,1.75e-09,20;UBERON:0000970,5.27e-09,21;UBERON:0002104,5.27e-09,21;UBERON:0002394,5.73e-09,6;UBERON:0003928,5.73e-09,6;UBERON:0001456,1.44e-08,22;UBERON:0003210,2.20e-08,3;UBERON:0001280,2.20e-08,3;UBERON:0004647,2.20e-08,3;UBERON:0005171,2.20e-08,3;UBERON:0002114,2.55e-08,2;UBERON:0005085,6.43e-08,31;UBERON:0000020,8.38e-08,24;UBERON:0001032,8.38e-08,24;UBERON:0004456,8.38e-08,24;UBERON:0000058,3.76e-07,19;UBERON:0001282,4.69e-07,1;UBERON:0009842,4.69e-07,1;UBERON:0003704,4.69e-07,1;UBERON:0001171,4.69e-07,1;UBERON:0001172,4.69e-07,1;UBERON:0004913,5.26e-07,1;UBERON:0003703,5.26e-07,1;UBERON:0001174,5.26e-07,1;UBERON:0004914,5.26e-07,1;UBERON:0001136,5.57e-07,1;UBERON:0001343,5.57e-07,1;UBERON:0004910,5.57e-07,1;UBERON:0005154,5.57e-07,1;UBERON:0005295,5.57e-07,1;UBERON:0004813,5.57e-07,1;UBERON:0005297,5.57e-07,1;UBERON:0005294,5.57e-07,1;UBERON:0010141,5.57e-07,1;UBERON:0005891,5.57e-07,1;UBERON:0010077,8.77e-07,4;UBERON:0005389,8.77e-07,4;UBERON:0000484,8.77e-07,4;UBERON:0002546,8.77e-07,4;UBERON:0000965,8.77e-07,4;UBERON:0001803,8.77e-07,4;UBERON:0003073,8.77e-07,4;UBERON:0005426,8.77e-07,4|phase1_expression=0.181678379270557,0,0,0,0,0,0,0,0.261185628199839,0.491467873003018,0,0,0,0.247532705920093,0.331397375727916,0,0,0,0,0.369363174230364,1.42800483870977,0,0,0.410623275218653,1.12988375635323,0,0,0,0,0,0,0,0.30120591877825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,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,0.103432995861895,0,0.476128862927481,0,0,0,0,0,0,0,0,0,0,0.162806537221949,0.106727345877715,0,0,2.34640942403454,0.366724332548599,0,0,0,0|short_description=p16@TGFB2}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=7042 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11768 | |||
|TSSclassifier=N | |||
|UniProt= | |||
|association_with_transcript=-260bp_to_uc001hll.2,uc001hlm.2,uc001hln.2,uc001hlo.2,uc010pue.1_5end | |||
|coexpression_cluster_id=C927 | |||
|description=CAGE_peak_16_at_TGFB2_5end | |||
|id=chr1:218519119..218519130,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000064;1.59e-17;3!CL:0000067;1.59e-17;3!CL:0005012;1.59e-17;3!CL:0002304;1.59e-17;3!CL:0002549;1.01e-11;2!CL:0000708;1.93e-08;3!CL:0000222;4.17e-07;1!CL:0000306;9.51e-07;4!CL:0002222;9.51e-07;4!CL:0002224;9.51e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000064,2.95e-17,3;CL:0000067,2.95e-17,3;CL:0005012,2.95e-17,3;CL:0002304,2.95e-17,3;CL:0002549,9.06e-12,2;CL:0000708,2.20e-08,3;CL:0000511,5.57e-07,1;CL:0002625,5.57e-07,1;CL:0000216,5.57e-07,1;CL:0000306,8.77e-07,4;CL:0002222,8.77e-07,4;CL:0002224,8.77e-07,4 | |||
|ontology_enrichment_development_v019=UBERON:0000358;4.17e-07;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:3571,8.27e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0000119!1.07e-11!312;UBERON:0000475!1.33e-10!365;UBERON:0000477!1.61e-10!286;UBERON:0000483!1.84e-10!309;UBERON:0000481!5.33e-10!347;UBERON:0004111!1.24e-09!241;UBERON:0000025!2.89e-08!194;UBERON:0002200!6.63e-08!11;UBERON:0006876!6.63e-08!11;UBERON:0005743!9.84e-08!86;UBERON:0000033!1.56e-07!123;UBERON:0003075!1.77e-07!86;UBERON:0007284!1.77e-07!86;UBERON:0000073!2.06e-07!94;UBERON:0001016!2.06e-07!94;UBERON:0001017!2.26e-07!82;UBERON:0002346!3.61e-07!90;UBERON:0004121!4.28e-07!169;UBERON:0000153!4.49e-07!129;UBERON:0007811!4.49e-07!129;UBERON:0000924!6.10e-07!173;UBERON:0006601!6.10e-07!173 | |||
|ontology_enrichment_uberon_v019=UBERON:0000488;1.70e-22;4!UBERON:0007625;5.57e-18;11!UBERON:0001778;1.59e-17;3!UBERON:0001775;1.59e-17;3!UBERON:0006876;1.81e-17;11!UBERON:0002203;4.65e-15;6!UBERON:0001768;4.65e-15;6!UBERON:0002200;4.65e-15;6!UBERON:0001801;5.28e-14;14!UBERON:0005629;1.01e-11;2!UBERON:0005358;1.01e-11;2!UBERON:0001886;1.01e-11;2!UBERON:0004086;1.01e-11;2!UBERON:0005282;1.01e-11;2!UBERON:0005281;1.01e-11;2!UBERON:0000019;3.69e-10;19!UBERON:0000047;3.69e-10;19!UBERON:0004088;3.69e-10;19!UBERON:0010230;3.69e-10;19!UBERON:0000970;1.27e-09;20!UBERON:0002104;3.92e-09;21!UBERON:0001456;3.92e-09;21!UBERON:0003210;1.93e-08;3!UBERON:0001280;2.27e-08;3!UBERON:0004647;2.27e-08;3!UBERON:0000020;2.76e-08;23!UBERON:0002114;4.22e-08;2!UBERON:0001032;6.48e-08;24!UBERON:0004456;6.48e-08;24!UBERON:0002294;7.99e-08;7!UBERON:0001173;7.99e-08;7!UBERON:0010371;1.24e-07;31!UBERON:0001282;4.17e-07;1!UBERON:0009842;4.17e-07;1!UBERON:0003704;4.17e-07;1!UBERON:0001171;4.17e-07;1!UBERON:0001172;4.17e-07;1!UBERON:0010077;9.51e-07;4!UBERON:0005389;9.51e-07;4!UBERON:0000484;9.51e-07;4!UBERON:0000965;9.51e-07;4!UBERON:0001803;9.51e-07;4 | |||
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| |||
|short_description=p16@TGFB2 | |||
}} |
Revision as of 03:40, 12 September 2013
Short description: | p16@TGFB2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_16_at_TGFB2_5end |
Coexpression cluster: | C927_Lens_gall_Ciliary_mesodermal_Fibroblast_Meningeal_cholangiocellular |
Association with transcript: | -260bp_to_uc001hll.2, uc001hlm.2, uc001hln.2, uc001hlo.2, uc010pue.1_5end |
EntrezGene: | TGFB2 |
HGNC: | 11768 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ciliated cell | 2.95e-17 | 3 |
ciliated epithelial cell | 2.95e-17 | 3 |
multi-ciliated epithelial cell | 2.95e-17 | 3 |
non-pigmented ciliary epithelial cell | 2.95e-17 | 3 |
fibroblast of choroid plexus | 9.06e-12 | 2 |
leptomeningeal cell | 2.20e-08 | 3 |
androgen binding protein secreting cell | 5.57e-07 | 1 |
seminiferous tubule epithelial cell | 5.57e-07 | 1 |
Sertoli cell | 5.57e-07 | 1 |
crystallin accumulating cell | 8.77e-07 | 4 |
vertebrate lens cell | 8.77e-07 | 4 |
lens epithelial cell | 8.77e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
liver cancer | 8.27e-07 | 1 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.