FFCP PHASE1:Hg19::chr19:1254314..1254350,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr19:1254314..1254350,+ | |||
|coexpression_cluster_id=C2 | |coexpression_cluster_id=C2 | ||
|description=CAGE_peak_at_chr19:1254314..1254350,+ | |description=CAGE_peak_at_chr19:1254314..1254350,+ | ||
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|ontology_enrichment_celltype=CL:0002057!3.54e-12!42;CL:0000860!4.38e-12!45;CL:0000766!6.66e-10!76;CL:0000557!8.41e-09!71;CL:0000839!1.12e-08!70;CL:0002194!9.77e-08!63;CL:0000576!9.77e-08!63;CL:0000040!9.77e-08!63;CL:0000559!9.77e-08!63;CL:0002009!2.24e-07!65 | |ontology_enrichment_celltype=CL:0002057!3.54e-12!42;CL:0000860!4.38e-12!45;CL:0000766!6.66e-10!76;CL:0000557!8.41e-09!71;CL:0000839!1.12e-08!70;CL:0002194!9.77e-08!63;CL:0000576!9.77e-08!63;CL:0000040!9.77e-08!63;CL:0000559!9.77e-08!63;CL:0002009!2.24e-07!65 | ||
|ontology_enrichment_celltype_v019=CL:0000860;1.81e-12;33!CL:0002057;1.81e-12;33!CL:0000473;3.89e-10;39!CL:0000234;3.89e-10;39!CL:0000576;5.02e-09;48!CL:1000746;9.27e-08;7!CL:1000612;9.27e-08;7!CL:0000766;2.34e-07;69 | |ontology_enrichment_celltype_v019=CL:0000860;1.81e-12;33!CL:0002057;1.81e-12;33!CL:0000473;3.89e-10;39!CL:0000234;3.89e-10;39!CL:0000576;5.02e-09;48!CL:1000746;9.27e-08;7!CL:1000612;9.27e-08;7!CL:0000766;2.34e-07;69 | ||
|ontology_enrichment_celltype_v019_2=CL:0000860,3.08e-14,42;CL:0002057,3.08e-14,42;CL:0000766,4.24e-14,72;CL:0000473,3.73e-13,48;CL:0000234,3.73e-13,48;CL:0000839,5.18e-12,66;CL:0000557,1.12e-11,67;CL:0002194,2.16e-09,59;CL:0000576,2.16e-09,59;CL:0000040,2.16e-09,59;CL:0000559,2.16e-09,59;CL:0002009,8.28e-09,61;CL:0000738,1.35e-08,136;CL:0002031,1.76e-07,120;CL:1000746,4.01e-07,7;CL:1000612,4.01e-07,7;CL:0000763,8.49e-07,108;CL:0000049,8.49e-07,108;CL:0000097,8.66e-07,5;CL:0002028,8.66e-07,5 | |||
|ontology_enrichment_development_v019=CL:0002057;4.91e-12;42 | |ontology_enrichment_development_v019=CL:0002057;4.91e-12;42 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000468!1.14e-07!659;UBERON:0000922!2.45e-07!612;UBERON:0000480!4.07e-07!626;UBERON:0002371!5.10e-07!80;UBERON:0000467!5.51e-07!625 | |ontology_enrichment_uberon=UBERON:0000468!1.14e-07!659;UBERON:0000922!2.45e-07!612;UBERON:0000480!4.07e-07!626;UBERON:0002371!5.10e-07!80;UBERON:0000467!5.51e-07!625 | ||
|ontology_enrichment_uberon_v019=UBERON:0000074;9.27e-08;7!UBERON:0001229;9.27e-08;7!UBERON:0000353;3.55e-07;15 | |ontology_enrichment_uberon_v019=UBERON:0000074;9.27e-08;7!UBERON:0001229;9.27e-08;7!UBERON:0000353;3.55e-07;15 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.22e-10,76;UBERON:0002390,3.85e-09,98;UBERON:0003061,3.85e-09,98;UBERON:0001474,4.31e-09,82;UBERON:0002193,1.76e-08,108;UBERON:0002405,4.12e-08,93;UBERON:0004765,4.47e-08,90;UBERON:0010532,4.01e-07,7;UBERON:0000074,4.01e-07,7;UBERON:0001229,4.01e-07,7;UBERON:0001230,4.01e-07,7;UBERON:0003220,4.01e-07,7;UBERON:0005749,4.01e-07,7;UBERON:0004199,4.01e-07,7;UBERON:0004209,4.01e-07,7;UBERON:0004198,4.01e-07,7;UBERON:0000353,6.13e-07,15;UBERON:0001434,7.95e-07,100 | |||
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|short_description=p@chr19:1254314..1254350,+ | |short_description=p@chr19:1254314..1254350,+ | ||
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Latest revision as of 03:40, 26 July 2015
Short description: | p@chr19:1254314..1254350, + |
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Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr19:1254314..1254350, + |
Coexpression cluster: | C2_Eosinophils_Neutrophils_CD14_Whole_Basophils_Peripheral_Mast |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 3.08e-14 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.08e-14 | 42 |
myeloid leukocyte | 4.24e-14 | 72 |
defensive cell | 3.73e-13 | 48 |
phagocyte | 3.73e-13 | 48 |
myeloid lineage restricted progenitor cell | 5.18e-12 | 66 |
granulocyte monocyte progenitor cell | 1.12e-11 | 67 |
monopoietic cell | 2.16e-09 | 59 |
monocyte | 2.16e-09 | 59 |
monoblast | 2.16e-09 | 59 |
promonocyte | 2.16e-09 | 59 |
macrophage dendritic cell progenitor | 8.28e-09 | 61 |
leukocyte | 1.35e-08 | 136 |
hematopoietic lineage restricted progenitor cell | 1.76e-07 | 120 |
glomerular cell | 4.01e-07 | 7 |
kidney corpuscule cell | 4.01e-07 | 7 |
myeloid cell | 8.49e-07 | 108 |
common myeloid progenitor | 8.49e-07 | 108 |
mast cell | 8.66e-07 | 5 |
basophil mast progenitor cell | 8.66e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 1.22e-10 | 76 |
hematopoietic system | 3.85e-09 | 98 |
blood island | 3.85e-09 | 98 |
bone element | 4.31e-09 | 82 |
hemolymphoid system | 1.76e-08 | 108 |
immune system | 4.12e-08 | 93 |
skeletal element | 4.47e-08 | 90 |
primitive nephron | 4.01e-07 | 7 |
renal glomerulus | 4.01e-07 | 7 |
renal corpuscle | 4.01e-07 | 7 |
glomerular capsule | 4.01e-07 | 7 |
metanephric mesenchyme | 4.01e-07 | 7 |
glomerular tuft | 4.01e-07 | 7 |
S-shaped body | 4.01e-07 | 7 |
renal vesicle | 4.01e-07 | 7 |
comma-shaped body | 4.01e-07 | 7 |
parenchyma | 6.13e-07 | 15 |
skeletal system | 7.95e-07 | 100 |