FFCP PHASE1:Hg19::chr1:94160495..94160512,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr1:94160495..94160512,- | |||
|coexpression_cluster_id=C195 | |coexpression_cluster_id=C195 | ||
|description=CAGE_peak_at_chr1:94160495..94160512,- | |description=CAGE_peak_at_chr1:94160495..94160512,- | ||
|id=chr1:94160495..94160512,- | |id=chr1:94160495..94160512,- | ||
|ontology_enrichment_celltype=CL:0000066!1.11e-40!254;CL:0002076!1.08e-27!43;CL:0000223!1.87e-20!59;CL:0002368!4.16e-14!13;CL:0000076!2.34e-11!62;CL:0002202!2.72e-11!9;CL:0002632!2.72e-11!9;CL:0002159!1.21e-10!13;CL:0000063!4.21e-09!578;CL:0002251!5.78e-09!21;CL:0000220!1.71e-08!246;CL:0002321!2.61e-08!248;CL:0002149!5.08e-07!6;CL:0002255!5.08e-07!6;CL:0002166!6.24e-07!3;CL:0002621!9.69e-07!3 | |ontology_enrichment_celltype=CL:0000066!1.11e-40!254;CL:0002076!1.08e-27!43;CL:0000223!1.87e-20!59;CL:0002368!4.16e-14!13;CL:0000076!2.34e-11!62;CL:0002202!2.72e-11!9;CL:0002632!2.72e-11!9;CL:0002159!1.21e-10!13;CL:0000063!4.21e-09!578;CL:0002251!5.78e-09!21;CL:0000220!1.71e-08!246;CL:0002321!2.61e-08!248;CL:0002149!5.08e-07!6;CL:0002255!5.08e-07!6;CL:0002166!6.24e-07!3;CL:0002621!9.69e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0002076;2.38e-17;42!CL:0002159;9.11e-16;14!CL:0002166;2.82e-15;3!CL:0002621;7.87e-15;3!CL:0000317;1.18e-10;2!CL:1000448;1.18e-10;2!CL:0002308;1.18e-10;2!CL:0002140;1.18e-10;2!CL:0002368;1.71e-08;13!CL:0002202;5.07e-08;9!CL:0002632;5.07e-08;9!CL:0002251;9.91e-08;20!CL:0000239;4.17e-07;3!CL:1000615;4.17e-07;3!CL:0002306;4.17e-07;3!CL:0000307;5.31e-07;3!CL:0002231;8.18e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002076,1.00e-20,42;CL:0000066,1.40e-20,253;CL:0002159,8.25e-16,14;CL:0002166,2.69e-15,3;CL:0002621,8.26e-15,3;CL:0000223,4.46e-14,58;CL:0000317,1.15e-10,2;CL:1000448,1.15e-10,2;CL:0002308,1.15e-10,2;CL:0002140,1.15e-10,2;CL:0002368,1.71e-08,13;CL:0000076,4.72e-08,63;CL:0002202,5.08e-08,9;CL:0002632,5.08e-08,9;CL:0002251,9.26e-08,20;CL:0000239,3.70e-07,3;CL:1000615,3.70e-07,3;CL:0002306,3.70e-07,3;CL:0002321,5.54e-07,250;CL:0000068,6.96e-07,3;CL:0000069,6.96e-07,3;CL:0000307,6.96e-07,3;CL:0000377,6.96e-07,3;CL:0002231,8.82e-07,3;CL:0002328,9.63e-07,3 | |||
|ontology_enrichment_development_v019=UBERON:0008814;1.55e-09;2!UBERON:0010056;1.55e-09;2!CL:0000223;1.50e-08;58!CL:0000377;5.31e-07;3 | |||
|ontology_enrichment_disease=DOID:305!7.60e-17!106;DOID:0050687!4.80e-13!143;DOID:1749!1.54e-12!14;DOID:3001!5.08e-07!6 | |ontology_enrichment_disease=DOID:305!7.60e-17!106;DOID:0050687!4.80e-13!143;DOID:1749!1.54e-12!14;DOID:3001!5.08e-07!6 | ||
|ontology_enrichment_disease_v019=DOID:1749;3.42e-08;14 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,3.29e-08,14 | |||
|ontology_enrichment_uberon=UBERON:0004119!4.23e-10!169;UBERON:0000925!4.23e-10!169;UBERON:0006595!4.23e-10!169;UBERON:0005911!9.45e-10!82;UBERON:0001004!1.78e-08!72;UBERON:0005153!6.78e-08!37;UBERON:0000344!2.69e-07!12;UBERON:0004807!2.70e-07!28;UBERON:0000065!3.07e-07!53;UBERON:0000161!3.37e-07!35;UBERON:0005157!3.83e-07!51;UBERON:0005910!3.95e-07!6;UBERON:0001007!8.32e-07!155;UBERON:0001555!8.32e-07!155;UBERON:0007026!8.32e-07!155;UBERON:0001949!9.69e-07!3 | |ontology_enrichment_uberon=UBERON:0004119!4.23e-10!169;UBERON:0000925!4.23e-10!169;UBERON:0006595!4.23e-10!169;UBERON:0005911!9.45e-10!82;UBERON:0001004!1.78e-08!72;UBERON:0005153!6.78e-08!37;UBERON:0000344!2.69e-07!12;UBERON:0004807!2.70e-07!28;UBERON:0000065!3.07e-07!53;UBERON:0000161!3.37e-07!35;UBERON:0005157!3.83e-07!51;UBERON:0005910!3.95e-07!6;UBERON:0001007!8.32e-07!155;UBERON:0001555!8.32e-07!155;UBERON:0007026!8.32e-07!155;UBERON:0001949!9.69e-07!3 | ||
|ontology_enrichment_uberon_v019=UBERON:0001949;7.87e-15;3!UBERON:0001708;1.43e-11;4!UBERON:0008895;1.43e-11;4!UBERON:0002419;1.18e-10;2!UBERON:0007771;1.18e-10;2!UBERON:0003297;1.18e-10;2!UBERON:0001821;1.18e-10;2!UBERON:0003487;1.18e-10;2!UBERON:0001820;1.18e-10;2!UBERON:0000486;2.20e-09;12!UBERON:0011159;2.44e-09;5!UBERON:0003729;1.07e-08;13!UBERON:0000344;1.19e-07;20!UBERON:0006853;4.17e-07;3!UBERON:0007685;4.17e-07;3!UBERON:0004134;4.17e-07;3!UBERON:0004807;8.63e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001949,8.26e-15,3;UBERON:0001708,1.38e-11,4;UBERON:0008895,1.38e-11,4;UBERON:0002419,1.15e-10,2;UBERON:0007771,1.15e-10,2;UBERON:0003297,1.15e-10,2;UBERON:0001821,1.15e-10,2;UBERON:0003487,1.15e-10,2;UBERON:0001820,1.15e-10,2;UBERON:0005089,1.15e-10,2;UBERON:0005088,1.15e-10,2;UBERON:0011159,2.38e-09,5;UBERON:0003729,9.95e-09,13;UBERON:0010188,7.45e-08,6;UBERON:0002539,7.45e-08,6;UBERON:0008816,7.45e-08,6;UBERON:0000344,1.25e-07,20;UBERON:0006853,3.70e-07,3;UBERON:0007685,3.70e-07,3;UBERON:0004134,3.70e-07,3;UBERON:0003102,3.74e-07,99;UBERON:0004815,9.63e-07,3;UBERON:0002031,9.63e-07,3 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.737201809504527,1.39560233594486,0.218441372130172,0.263766978228454,0,0,0,0,0,0,0,0,0,0,0,0,0.0764134057479513,0,0,0,0,0,1.83884244895785,1.50602959389125,0.739508020333575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0,0,0,0,0,0,0.0945348171640679,0,0.087834785693126,0,2.5500670180478,0.741568885568859,0,0,0.132957960518865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.61656431285521,0,0,0.264818361626438,0.286836620748814,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.358779271377724,0,0,0,0,0,0,0.168776332241266,0.0974370051611986,0,0,0,0,0,0,2.31913023795956,3.81844568827169,9.46455164783713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196221465125346,0,0,0,0,0,0,0,0,0,0.122988438543114,0.857839051492628,2.96325770603289,0,0.804231779293047,3.42577247086559,0,0,0,0,0,0,0,0,0,0,0,0,0,7.49870671894216,7.0552493843521,5.95455408418023,0.626909658919938,1.45316969256981,4.21720947081732,0,0,0,0,0,0.063497894292169,0,0,0,0,0,0,0.112131084345361,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.301439377059586,0,0.299918973546171,0,0,0,0,0,0,0,0,0.358121926479791,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.48418066444991,0,0,0,0,0,0,1.20303882181971,2.76242966807689,0,0,0,0.451199612907412,1.84836809050595,0,0,0.105551628892876,0,0,0,0,0,0,2.80363900349542,3.3243040357149,0,0,0,0.256450125116389,0,0,0.103041011647722,0,0,6.3169209179579,4.55042172225565,0,0,0,0,0,0,0,0,0,0.826424576804891,0,32.1584035486352,0.2023155617111,0,0.31481234683064,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192444225451024,2.01090682660736,2.17781969722645,0.0941438007767792,2.58303223602738,0,0.443430153536676,0.689170200620878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.10367830158997,0,2.76444631889309,0,0,0,0,0,0,0,0,0,0,0,0.808815160325942,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0.1137934482855,0.254253650292766,0,0,0,0,0,0,0,0,0,0,0.10893846351899,0.83654246567162,0,0,0,0,0,1.91400695839152,0,0,0,0,0,0,0,0,0,0,0.210998064528027,0.816164040795739,0,0,0,0,0,0,0,0,0,0,0,0,0,0.242780379534093,0,0,0,0,0,0,0,0,0,0,2.56148591426813,0.138674673013139,0.520679215005393,3.23374911467446,23.0706897438067,0,0,0.0967563312890851,0.292357268344742,0.164230914106418,0,0,0,0.411125773940253,0,0,0.195551382734803,0.0801588202515337,0,0,0,0,0,1.1524383839052,0.99402028452346,1.17847017308398,0,0,0.101998217636322,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.321506296930038,0,0,0,0,0,0,0,0,0.105600336519406,0,0.383830394638891,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.10673006216145,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.214441591374926,0,0,0,0,1.25362188757041,0,0.219284049578707,0.176689145945881,1.54331230616732,0.506827321959218,0,0,0,0,0,0,0,0,0,1.05656061679314,0,0,0,0,0,0.139879507719444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0981477185010256,0,0.183428598521679,1.73288499225507,0,0,0,0,0.40341013740704,0,0,0.327543835020193,1.77427303460454,0,0,0,0,0,0,0,0,0.255524855279191,0,0,0,0,0.443511850813194,0,0.342976018874837,0,0,0.827356886187777,0.444925607568277,0,0,0,0,0.215927591218621,0,0,0,0,0,0,0,0,0.691259661814092,0,0,0,0,1.14553434272025,0,0.955538938977433,0,0.098150233615243,0.121917924982269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178553938605658,5.64631794745107,0.561689566824178,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213233981900981,0,0,0.0620747142958579,0,0.0636471582781649,0,1.30630048738177,0,0.202056159043763,0,0,0.325613074443898,1.28072815053259,0,0,0,0,0,0,0,0 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| ||
|short_description=p@chr1:94160495..94160512,- | |short_description=p@chr1:94160495..94160512,- | ||
}} | }} |
Latest revision as of 11:27, 28 July 2015
Short description: | p@chr1:94160495..94160512, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:94160495..94160512, - |
Coexpression cluster: | C195_Small_Gingival_Bronchial_Smooth_mesenchymal_Urothelial_Tracheal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endo-epithelial cell | 1.00e-20 | 42 |
epithelial cell | 1.40e-20 | 253 |
general ecto-epithelial cell | 8.25e-16 | 14 |
epithelial cell of Malassez | 2.69e-15 | 3 |
gingival epithelial cell | 8.26e-15 | 3 |
endodermal cell | 4.46e-14 | 58 |
sebum secreting cell | 1.15e-10 | 2 |
epithelial cell of sweat gland | 1.15e-10 | 2 |
epithelial cell of skin gland | 1.15e-10 | 2 |
acinar cell of sebaceous gland | 1.15e-10 | 2 |
respiratory epithelial cell | 1.71e-08 | 13 |
squamous epithelial cell | 4.72e-08 | 63 |
epithelial cell of tracheobronchial tree | 5.08e-08 | 9 |
epithelial cell of lower respiratory tract | 5.08e-08 | 9 |
epithelial cell of alimentary canal | 9.26e-08 | 20 |
brush border epithelial cell | 3.70e-07 | 3 |
kidney cortex tubule cell | 3.70e-07 | 3 |
epithelial cell of proximal tubule | 3.70e-07 | 3 |
embryonic cell | 5.54e-07 | 250 |
duct epithelial cell | 6.96e-07 | 3 |
branched duct epithelial cell | 6.96e-07 | 3 |
tracheal epithelial cell | 6.96e-07 | 3 |
tracheoblast | 6.96e-07 | 3 |
epithelial cell of prostate | 8.82e-07 | 3 |
bronchial epithelial cell | 9.63e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
gingival epithelium | 8.26e-15 | 3 |
jaw skeleton | 1.38e-11 | 4 |
splanchnocranium | 1.38e-11 | 4 |
skin gland | 1.15e-10 | 2 |
epidermis gland | 1.15e-10 | 2 |
gland of integumental system | 1.15e-10 | 2 |
sebaceous gland | 1.15e-10 | 2 |
skin sebaceous gland | 1.15e-10 | 2 |
sweat gland | 1.15e-10 | 2 |
sweat gland placode | 1.15e-10 | 2 |
sebaceous gland placode | 1.15e-10 | 2 |
primary subdivision of cranial skeletal system | 2.38e-09 | 5 |
mouth mucosa | 9.95e-09 | 13 |
protuberance | 7.45e-08 | 6 |
pharyngeal arch | 7.45e-08 | 6 |
embryonic head | 7.45e-08 | 6 |
mucosa | 1.25e-07 | 20 |
renal cortex tubule | 3.70e-07 | 3 |
region of nephron tubule | 3.70e-07 | 3 |
proximal tubule | 3.70e-07 | 3 |
surface structure | 3.74e-07 | 99 |
lower respiratory tract epithelium | 9.63e-07 | 3 |
epithelium of bronchus | 9.63e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 3.29e-08 | 14 |