FFCP PHASE1:Hg19::chr1:44399466..44399482,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9048 | |EntrezGene=9048 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=727 | |HGNC=727 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-1bp_to_ENST00000498139_5end | |association_with_transcript=-1bp_to_ENST00000498139_5end | ||
|cluster_id=chr1:44399466..44399482,+ | |||
|coexpression_cluster_id=C226 | |coexpression_cluster_id=C226 | ||
|description=CAGE_peak_3_at_ARTN_5end | |description=CAGE_peak_3_at_ARTN_5end | ||
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|ontology_enrichment_celltype=CL:0000066!1.27e-22!254;CL:0002076!5.33e-17!43;CL:0002368!3.42e-15!13;CL:0002159!4.70e-12!13;CL:0002077!1.35e-11!33;CL:0000223!4.85e-11!59;CL:0000221!1.14e-10!71;CL:0002202!2.49e-10!9;CL:0002632!2.49e-10!9;CL:0000076!7.68e-07!62;CL:0000128!8.19e-07!7;CL:0000126!8.19e-07!7;CL:0000127!8.19e-07!7;CL:0002453!8.19e-07!7 | |ontology_enrichment_celltype=CL:0000066!1.27e-22!254;CL:0002076!5.33e-17!43;CL:0002368!3.42e-15!13;CL:0002159!4.70e-12!13;CL:0002077!1.35e-11!33;CL:0000223!4.85e-11!59;CL:0000221!1.14e-10!71;CL:0002202!2.49e-10!9;CL:0002632!2.49e-10!9;CL:0000076!7.68e-07!62;CL:0000128!8.19e-07!7;CL:0000126!8.19e-07!7;CL:0000127!8.19e-07!7;CL:0002453!8.19e-07!7 | ||
|ontology_enrichment_celltype_v019=CL:0002368;1.94e-26;13!CL:0002076;3.09e-20;42!CL:0002159;2.62e-19;14!CL:0002202;1.65e-16;9!CL:0002632;1.65e-16;9!CL:0002328;2.03e-10;3!CL:0000307;4.43e-10;3!CL:0002077;7.93e-10;34!CL:0002621;7.99e-10;3!CL:0000128;1.74e-09;7!CL:0000126;1.74e-09;7!CL:0000127;1.74e-09;7!CL:0002605;5.42e-09;3!CL:0002166;6.86e-09;3!CL:0000362;2.47e-08;9!CL:0002251;3.31e-08;20!CL:0000240;3.37e-08;6!CL:0000311;3.37e-08;6!CL:0000079;3.37e-08;6!CL:0000237;3.37e-08;6!CL:0002327;2.05e-07;4!CL:0000575;4.16e-07;2!CL:0000317;5.58e-07;2!CL:1000448;5.58e-07;2!CL:0002308;5.58e-07;2!CL:0002140;5.58e-07;2!CL:0000244;9.05e-07;4!CL:0000731;9.05e-07;4 | |ontology_enrichment_celltype_v019=CL:0002368;1.94e-26;13!CL:0002076;3.09e-20;42!CL:0002159;2.62e-19;14!CL:0002202;1.65e-16;9!CL:0002632;1.65e-16;9!CL:0002328;2.03e-10;3!CL:0000307;4.43e-10;3!CL:0002077;7.93e-10;34!CL:0002621;7.99e-10;3!CL:0000128;1.74e-09;7!CL:0000126;1.74e-09;7!CL:0000127;1.74e-09;7!CL:0002605;5.42e-09;3!CL:0002166;6.86e-09;3!CL:0000362;2.47e-08;9!CL:0002251;3.31e-08;20!CL:0000240;3.37e-08;6!CL:0000311;3.37e-08;6!CL:0000079;3.37e-08;6!CL:0000237;3.37e-08;6!CL:0002327;2.05e-07;4!CL:0000575;4.16e-07;2!CL:0000317;5.58e-07;2!CL:1000448;5.58e-07;2!CL:0002308;5.58e-07;2!CL:0002140;5.58e-07;2!CL:0000244;9.05e-07;4!CL:0000731;9.05e-07;4 | ||
|ontology_enrichment_celltype_v019_2=CL:0002368,2.02e-26,13;CL:0002076,6.69e-26,42;CL:0000066,8.10e-26,253;CL:0002159,2.13e-19,14;CL:0000223,5.83e-19,58;CL:0002202,1.68e-16,9;CL:0002632,1.68e-16,9;CL:0000221,1.37e-12,72;CL:0002077,1.26e-11,34;CL:0002321,5.83e-11,250;CL:0002328,1.97e-10,3;CL:0000076,2.66e-10,63;CL:0000068,4.71e-10,3;CL:0000069,4.71e-10,3;CL:0000307,4.71e-10,3;CL:0000377,4.71e-10,3;CL:0002621,8.73e-10,3;CL:0000128,2.16e-09,7;CL:0000126,2.16e-09,7;CL:0000127,2.16e-09,7;CL:0002453,2.16e-09,7;CL:0002166,5.13e-09,3;CL:0002605,5.73e-09,3;CL:0000362,2.41e-08,9;CL:0000240,3.21e-08,6;CL:0000311,3.21e-08,6;CL:0000079,3.21e-08,6;CL:0000237,3.21e-08,6;CL:0000036,3.21e-08,6;CL:0000357,3.21e-08,6;CL:0000114,3.21e-08,6;CL:0002251,3.45e-08,20;CL:0002327,1.98e-07,4;CL:0000575,4.35e-07,2;CL:0000317,5.50e-07,2;CL:1000448,5.50e-07,2;CL:0002308,5.50e-07,2;CL:0002140,5.50e-07,2;CL:0000244,9.15e-07,4;CL:0000731,9.15e-07,4 | |||
|ontology_enrichment_development_v019=CL:0000223;1.66e-10;58!CL:0000377;4.43e-10;3!CL:0000357;3.37e-08;6!CL:0000114;3.37e-08;6 | |ontology_enrichment_development_v019=CL:0000223;1.66e-10;58!CL:0000377;4.43e-10;3!CL:0000357;3.37e-08;6!CL:0000114;3.37e-08;6 | ||
|ontology_enrichment_disease=DOID:1749!1.83e-12!14;DOID:0050687!5.52e-09!143;DOID:305!6.07e-09!106;DOID:3908!8.93e-07!5 | |ontology_enrichment_disease=DOID:1749!1.83e-12!14;DOID:0050687!5.52e-09!143;DOID:305!6.07e-09!106;DOID:3908!8.93e-07!5 | ||
|ontology_enrichment_disease_v019=DOID:1749;2.94e-18;14 | |ontology_enrichment_disease_v019=DOID:1749;2.94e-18;14 | ||
|ontology_enrichment_disease_v019_2=DOID:1749,2.57e-18,14 | |||
|ontology_enrichment_uberon=UBERON:0001004!2.76e-09!72;UBERON:0007196!9.79e-09!14;UBERON:0001558!9.79e-09!14;UBERON:0005178!2.46e-08!34;UBERON:0002224!2.46e-08!34;UBERON:0005910!2.76e-08!6;UBERON:0005181!5.95e-08!35;UBERON:0005153!3.05e-07!37;UBERON:0000365!3.11e-07!5;UBERON:0000065!3.89e-07!53;UBERON:0000464!6.06e-07!104;UBERON:0003729!7.38e-07!5 | |ontology_enrichment_uberon=UBERON:0001004!2.76e-09!72;UBERON:0007196!9.79e-09!14;UBERON:0001558!9.79e-09!14;UBERON:0005178!2.46e-08!34;UBERON:0002224!2.46e-08!34;UBERON:0005910!2.76e-08!6;UBERON:0005181!5.95e-08!35;UBERON:0005153!3.05e-07!37;UBERON:0000365!3.11e-07!5;UBERON:0000065!3.89e-07!53;UBERON:0000464!6.06e-07!104;UBERON:0003729!7.38e-07!5 | ||
|ontology_enrichment_uberon_v019=UBERON:0000486;5.25e-14;12!UBERON:0005910;2.53e-11;6!UBERON:0005911;1.71e-10;36!UBERON:0004815;2.03e-10;3!UBERON:0002031;2.03e-10;3!UBERON:0001949;7.99e-10;3!UBERON:0004807;1.84e-09;22!UBERON:0007196;2.09e-09;15!UBERON:0001558;2.09e-09;15!UBERON:0000365;3.21e-09;5!UBERON:0003729;1.35e-07;13!UBERON:0001911;2.05e-07;4!UBERON:0002419;5.58e-07;2!UBERON:0007771;5.58e-07;2!UBERON:0003297;5.58e-07;2!UBERON:0001821;5.58e-07;2!UBERON:0003487;5.58e-07;2!UBERON:0001820;5.58e-07;2!UBERON:0001708;9.23e-07;4!UBERON:0008895;9.23e-07;4 | |ontology_enrichment_uberon_v019=UBERON:0000486;5.25e-14;12!UBERON:0005910;2.53e-11;6!UBERON:0005911;1.71e-10;36!UBERON:0004815;2.03e-10;3!UBERON:0002031;2.03e-10;3!UBERON:0001949;7.99e-10;3!UBERON:0004807;1.84e-09;22!UBERON:0007196;2.09e-09;15!UBERON:0001558;2.09e-09;15!UBERON:0000365;3.21e-09;5!UBERON:0003729;1.35e-07;13!UBERON:0001911;2.05e-07;4!UBERON:0002419;5.58e-07;2!UBERON:0007771;5.58e-07;2!UBERON:0003297;5.58e-07;2!UBERON:0001821;5.58e-07;2!UBERON:0003487;5.58e-07;2!UBERON:0001820;5.58e-07;2!UBERON:0001708;9.23e-07;4!UBERON:0008895;9.23e-07;4 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0005910,2.24e-11,6;UBERON:0004815,1.97e-10,3;UBERON:0002031,1.97e-10,3;UBERON:0001949,8.73e-10,3;UBERON:0001004,1.39e-09,74;UBERON:0007196,2.10e-09,15;UBERON:0001558,2.10e-09,15;UBERON:0000365,3.04e-09,5;UBERON:0005157,1.09e-07,47;UBERON:0003729,1.36e-07,13;UBERON:0004119,1.46e-07,160;UBERON:0000925,1.46e-07,160;UBERON:0006595,1.46e-07,160;UBERON:0001911,1.98e-07,4;UBERON:0005333,1.98e-07,4;UBERON:0008425,1.98e-07,4;UBERON:0005311,1.98e-07,4;UBERON:0005153,2.32e-07,37;UBERON:0004807,4.69e-07,28;UBERON:0002419,5.50e-07,2;UBERON:0007771,5.50e-07,2;UBERON:0003297,5.50e-07,2;UBERON:0001821,5.50e-07,2;UBERON:0003487,5.50e-07,2;UBERON:0001820,5.50e-07,2;UBERON:0005089,5.50e-07,2;UBERON:0005088,5.50e-07,2;UBERON:0005178,5.95e-07,34;UBERON:0002224,5.95e-07,34;UBERON:0001708,7.45e-07,4;UBERON:0008895,7.45e-07,4 | |||
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| ||
|short_description=p3@ARTN | |short_description=p3@ARTN | ||
}} | }} |
Latest revision as of 05:25, 18 September 2015
Short description: | p3@ARTN |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_ARTN_5end |
Coexpression cluster: | C226_Corneal_Keratinocyte_Esophageal_Urothelial_Mammary_Bronchial_Tracheal |
Association with transcript: | -1bp_to_ENST00000498139_5end |
EntrezGene: | ARTN |
HGNC: | 727 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
transitional epithelium | 2.24e-11 | 6 |
lower respiratory tract epithelium | 1.97e-10 | 3 |
epithelium of bronchus | 1.97e-10 | 3 |
gingival epithelium | 8.73e-10 | 3 |
respiratory system | 1.39e-09 | 74 |
tracheobronchial tree | 2.10e-09 | 15 |
lower respiratory tract | 2.10e-09 | 15 |
urothelium | 3.04e-09 | 5 |
epithelial fold | 1.09e-07 | 47 |
mouth mucosa | 1.36e-07 | 13 |
endoderm-derived structure | 1.46e-07 | 160 |
endoderm | 1.46e-07 | 160 |
presumptive endoderm | 1.46e-07 | 160 |
mammary gland | 1.98e-07 | 4 |
mammary bud | 1.98e-07 | 4 |
mammary ridge | 1.98e-07 | 4 |
mammary placode | 1.98e-07 | 4 |
epithelial bud | 2.32e-07 | 37 |
respiratory system epithelium | 4.69e-07 | 28 |
skin gland | 5.50e-07 | 2 |
epidermis gland | 5.50e-07 | 2 |
gland of integumental system | 5.50e-07 | 2 |
sebaceous gland | 5.50e-07 | 2 |
skin sebaceous gland | 5.50e-07 | 2 |
sweat gland | 5.50e-07 | 2 |
sweat gland placode | 5.50e-07 | 2 |
sebaceous gland placode | 5.50e-07 | 2 |
thoracic cavity element | 5.95e-07 | 34 |
thoracic cavity | 5.95e-07 | 34 |
jaw skeleton | 7.45e-07 | 4 |
splanchnocranium | 7.45e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 2.57e-18 | 14 |