FFCP PHASE1:Hg19::chr4:71384300..71384314,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=401138 | |EntrezGene=401138 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=33188 | |HGNC=33188 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000504451_5end | |association_with_transcript=0bp_to_ENST00000504451_5end | ||
|cluster_id=chr4:71384300..71384314,+ | |||
|coexpression_cluster_id=C536 | |coexpression_cluster_id=C536 | ||
|description=CAGE_peak_2_at_AMTN_5end | |description=CAGE_peak_2_at_AMTN_5end | ||
|id=chr4:71384300..71384314,+ | |id=chr4:71384300..71384314,+ | ||
|ontology_enrichment_celltype=CL:0002076!1.49e-13!43;CL:0000066!7.48e-13!254;CL:0000244!1.37e-12!4;CL:0000731!1.37e-12!4;CL:0002166!2.57e-10!3;CL:0000064!7.99e-10!3;CL:0005012!7.99e-10!3;CL:0000067!7.99e-10!3;CL:0002304!7.99e-10!3;CL:0000223!8.06e-09!59;CL:0002251!1.28e-07!21;CL:0000306!2.15e-07!4;CL:0002222!2.15e-07!4;CL:0002224!2.15e-07!4;CL:0000076!9.89e-07!62 | |ontology_enrichment_celltype=CL:0002076!1.49e-13!43;CL:0000066!7.48e-13!254;CL:0000244!1.37e-12!4;CL:0000731!1.37e-12!4;CL:0002166!2.57e-10!3;CL:0000064!7.99e-10!3;CL:0005012!7.99e-10!3;CL:0000067!7.99e-10!3;CL:0002304!7.99e-10!3;CL:0000223!8.06e-09!59;CL:0002251!1.28e-07!21;CL:0000306!2.15e-07!4;CL:0002222!2.15e-07!4;CL:0002224!2.15e-07!4;CL:0000076!9.89e-07!62 | ||
|ontology_enrichment_celltype_v019=CL:0002166;1.22e-20;3!CL:0000244;3.70e-15;4!CL:0000731;3.70e-15;4!CL:0002076;3.43e-11;42!CL:0000064;1.02e-09;3!CL:0000067;1.02e-09;3!CL:0005012;1.02e-09;3!CL:0002304;1.02e-09;3!CL:0002621;1.38e-09;3!CL:0002586;1.98e-09;3!CL:0002251;5.20e-08;20!CL:0000342;6.52e-08;1!CL:0002565;6.52e-08;1!CL:0000306;2.13e-07;4!CL:0002222;2.13e-07;4!CL:0002224;2.13e-07;4!CL:0000149;2.80e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0002166,1.11e-20,3;CL:0000244,3.45e-15,4;CL:0000731,3.45e-15,4;CL:0002076,9.88e-14,42;CL:0000066,1.66e-12,253;CL:0000064,1.06e-09,3;CL:0000067,1.06e-09,3;CL:0005012,1.06e-09,3;CL:0002304,1.06e-09,3;CL:0002621,1.57e-09,3;CL:0000223,1.79e-09,58;CL:0002586,1.94e-09,3;CL:0002251,5.32e-08,20;CL:0000342,6.10e-08,1;CL:0002565,6.10e-08,1;CL:0000306,2.20e-07,4;CL:0002222,2.20e-07,4;CL:0002224,2.20e-07,4;CL:0000149,2.75e-07,4 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:1749!2.49e-11!14 | |ontology_enrichment_disease=DOID:1749!2.49e-11!14 | ||
|ontology_enrichment_disease_v019=DOID:3151;1.49e-07;1!DOID:3149;1.49e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3151,1.87e-07,1;DOID:3149,1.87e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0007625!5.21e-21!11;UBERON:0003729!4.73e-14!5;UBERON:0001444!1.65e-13!48;UBERON:0000488!1.19e-12!4;UBERON:0005910!3.28e-12!6;UBERON:0003343!9.76e-12!4;UBERON:0004785!9.76e-12!4;UBERON:0000019!2.30e-11!19;UBERON:0000047!2.30e-11!19;UBERON:0004088!2.30e-11!19;UBERON:0003072!2.30e-11!19;UBERON:0003071!2.30e-11!19;UBERON:0004128!2.30e-11!19;UBERON:0000020!4.89e-11!23;UBERON:0000970!1.05e-10!20;UBERON:0001032!1.73e-10!24;UBERON:0004456!1.73e-10!24;UBERON:0002104!4.17e-10!21;UBERON:0001456!4.17e-10!21;UBERON:0000365!4.60e-10!5;UBERON:0001778!7.99e-10!3;UBERON:0001775!7.99e-10!3;UBERON:0001801!9.36e-10!14;UBERON:0002203!2.03e-08!6;UBERON:0001768!2.03e-08!6;UBERON:0000344!7.11e-08!12;UBERON:0001708!8.16e-08!4;UBERON:0001704!8.16e-08!4;UBERON:0010077!2.15e-07!4;UBERON:0005389!2.15e-07!4;UBERON:0000484!2.15e-07!4;UBERON:0002546!2.15e-07!4;UBERON:0000965!2.15e-07!4;UBERON:0001803!2.15e-07!4;UBERON:0003073!2.15e-07!4;UBERON:0005426!2.15e-07!4;UBERON:0005085!7.93e-07!29 | |ontology_enrichment_uberon=UBERON:0007625!5.21e-21!11;UBERON:0003729!4.73e-14!5;UBERON:0001444!1.65e-13!48;UBERON:0000488!1.19e-12!4;UBERON:0005910!3.28e-12!6;UBERON:0003343!9.76e-12!4;UBERON:0004785!9.76e-12!4;UBERON:0000019!2.30e-11!19;UBERON:0000047!2.30e-11!19;UBERON:0004088!2.30e-11!19;UBERON:0003072!2.30e-11!19;UBERON:0003071!2.30e-11!19;UBERON:0004128!2.30e-11!19;UBERON:0000020!4.89e-11!23;UBERON:0000970!1.05e-10!20;UBERON:0001032!1.73e-10!24;UBERON:0004456!1.73e-10!24;UBERON:0002104!4.17e-10!21;UBERON:0001456!4.17e-10!21;UBERON:0000365!4.60e-10!5;UBERON:0001778!7.99e-10!3;UBERON:0001775!7.99e-10!3;UBERON:0001801!9.36e-10!14;UBERON:0002203!2.03e-08!6;UBERON:0001768!2.03e-08!6;UBERON:0000344!7.11e-08!12;UBERON:0001708!8.16e-08!4;UBERON:0001704!8.16e-08!4;UBERON:0010077!2.15e-07!4;UBERON:0005389!2.15e-07!4;UBERON:0000484!2.15e-07!4;UBERON:0002546!2.15e-07!4;UBERON:0000965!2.15e-07!4;UBERON:0001803!2.15e-07!4;UBERON:0003073!2.15e-07!4;UBERON:0005426!2.15e-07!4;UBERON:0005085!7.93e-07!29 | ||
|ontology_enrichment_uberon_v019=UBERON:0007625;5.73e-28;11!UBERON:0000019;7.34e-16;19!UBERON:0000047;7.34e-16;19!UBERON:0004088;7.34e-16;19!UBERON:0010230;7.34e-16;19!UBERON:0010371;1.15e-15;31!UBERON:0001708;1.26e-15;4!UBERON:0008895;1.26e-15;4!UBERON:0000488;2.22e-15;4!UBERON:0000970;5.00e-15;20!UBERON:0002104;2.84e-14;21!UBERON:0001456;2.84e-14;21!UBERON:0000486;2.51e-13;12!UBERON:0000020;5.85e-13;23!UBERON:0011159;1.32e-12;5!UBERON:0001032;2.20e-12;24!UBERON:0004456;2.20e-12;24!UBERON:0000365;3.10e-12;5!UBERON:0001801;1.69e-11;14!UBERON:0002203;2.00e-10;6!UBERON:0001768;2.00e-10;6!UBERON:0002200;2.00e-10;6!UBERON:0001444;2.51e-10;48!UBERON:0005910;2.79e-10;6!UBERON:0001778;1.02e-09;3!UBERON:0001775;1.02e-09;3!UBERON:0001949;1.38e-09;3!UBERON:0001781;1.98e-09;3!UBERON:0001782;1.98e-09;3!UBERON:0000033;1.70e-08;50!UBERON:0003729;3.19e-08;13!UBERON:0002506;6.52e-08;1!UBERON:0001769;6.52e-08;1!UBERON:0003343;1.57e-07;4!UBERON:0004785;1.57e-07;4!UBERON:0010077;2.13e-07;4!UBERON:0005389;2.13e-07;4!UBERON:0000484;2.13e-07;4!UBERON:0000965;2.13e-07;4!UBERON:0001803;2.13e-07;4!UBERON:0000153;4.23e-07;54!UBERON:0007811;7.82e-07;52 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007625,5.86e-28,11;UBERON:0000033,5.52e-20,56;UBERON:0000153,8.78e-18,62;UBERON:0007811,8.78e-18,62;UBERON:0001708,1.17e-15,4;UBERON:0008895,1.17e-15,4;UBERON:0000488,2.22e-15,4;UBERON:0000019,5.06e-15,20;UBERON:0000047,5.06e-15,20;UBERON:0010312,5.06e-15,20;UBERON:0004088,5.06e-15,20;UBERON:0010230,5.06e-15,20;UBERON:0003072,5.06e-15,20;UBERON:0004128,5.06e-15,20;UBERON:0003071,5.06e-15,20;UBERON:0000970,2.88e-14,21;UBERON:0002104,2.88e-14,21;UBERON:0001444,5.68e-14,49;UBERON:0001456,1.40e-13,22;UBERON:0011159,1.24e-12,5;UBERON:0000020,2.22e-12,24;UBERON:0001032,2.22e-12,24;UBERON:0004456,2.22e-12,24;UBERON:0000365,2.93e-12,5;UBERON:0001801,1.73e-11,14;UBERON:0010188,1.31e-10,6;UBERON:0002539,1.31e-10,6;UBERON:0008816,1.31e-10,6;UBERON:0002203,2.00e-10,6;UBERON:0001768,2.00e-10,6;UBERON:0002200,2.00e-10,6;UBERON:0005910,2.66e-10,6;UBERON:0001778,1.06e-09,3;UBERON:0001775,1.06e-09,3;UBERON:0001949,1.57e-09,3;UBERON:0001782,1.94e-09,3;UBERON:0005424,1.94e-09,3;UBERON:0005085,2.14e-09,31;UBERON:0003729,3.28e-08,13;UBERON:0002506,6.10e-08,1;UBERON:0001769,6.10e-08,1;UBERON:0003343,1.49e-07,4;UBERON:0004785,1.49e-07,4;UBERON:0010077,2.20e-07,4;UBERON:0005389,2.20e-07,4;UBERON:0000484,2.20e-07,4;UBERON:0002546,2.20e-07,4;UBERON:0000965,2.20e-07,4;UBERON:0001803,2.20e-07,4;UBERON:0003073,2.20e-07,4;UBERON:0005426,2.20e-07,4;UBERON:0001781,2.75e-07,4 | |||
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| ||
|short_description=p2@AMTN | |short_description=p2@AMTN | ||
}} | }} |
Latest revision as of 10:49, 18 September 2015
Short description: | p2@AMTN |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_AMTN_5end |
Coexpression cluster: | C536_Chondrocyte_Mallassezderived_liver_mesothelioma_Adipocyte_serous_tenocyte |
Association with transcript: | 0bp_to_ENST00000504451_5end |
EntrezGene: | AMTN |
HGNC: | 33188 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of Malassez | 1.11e-20 | 3 |
transitional epithelial cell | 3.45e-15 | 4 |
urothelial cell | 3.45e-15 | 4 |
endo-epithelial cell | 9.88e-14 | 42 |
epithelial cell | 1.66e-12 | 253 |
ciliated cell | 1.06e-09 | 3 |
ciliated epithelial cell | 1.06e-09 | 3 |
multi-ciliated epithelial cell | 1.06e-09 | 3 |
non-pigmented ciliary epithelial cell | 1.06e-09 | 3 |
gingival epithelial cell | 1.57e-09 | 3 |
endodermal cell | 1.79e-09 | 58 |
retinal pigment epithelial cell | 1.94e-09 | 3 |
epithelial cell of alimentary canal | 5.32e-08 | 20 |
pigment cell (sensu Vertebrata) | 6.10e-08 | 1 |
iris pigment epithelial cell | 6.10e-08 | 1 |
crystallin accumulating cell | 2.20e-07 | 4 |
vertebrate lens cell | 2.20e-07 | 4 |
lens epithelial cell | 2.20e-07 | 4 |
visual pigment cell | 2.75e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
skin squamous cell carcinoma | 1.87e-07 | 1 |
keratoacanthoma | 1.87e-07 | 1 |