FFCP PHASE1:Hg19::chr3:50192499..50192534,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6405 | |EntrezGene=6405 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10728 | |HGNC=10728 | ||
|TSSclassifier=strong | |||
|UniProt=C9JPG5 | |UniProt=C9JPG5 | ||
|association_with_transcript=0bp_to_ENST00000413852_5end | |association_with_transcript=0bp_to_ENST00000413852_5end | ||
|cluster_id=chr3:50192499..50192534,+ | |||
|coexpression_cluster_id=C1927 | |||
|description=CAGE_peak_1_at_SEMA3F_5end | |description=CAGE_peak_1_at_SEMA3F_5end | ||
|id=chr3:50192499..50192534,+ | |id=chr3:50192499..50192534,+ | ||
|ontology_enrichment_celltype=CL:0000066!1.59e-31!254;CL:0002321!2.03e-18!248;CL:0000220!5.35e-18!246;CL:0000076!5.39e-13!62;CL:0002078!1.67e-12!44;CL:0002139!2.64e-12!24;CL:0000115!3.57e-12!35;CL:0000071!1.17e-10!18;CL:0002546!1.17e-10!18;CL:0002076!6.06e-10!43;CL:0000213!6.89e-10!57;CL:0000215!6.89e-10!57;CL:0000223!1.35e-08!59;CL:1000449!2.15e-08!16;CL:0002159!7.32e-08!13;CL:0000222!1.54e-07!119;CL:1000497!1.60e-07!18;CL:0002518!1.60e-07!18;CL:0002681!5.08e-07!13;CL:0002584!5.08e-07!13;CL:1000413!7.03e-07!9 | |ontology_enrichment_celltype=CL:0000066!1.59e-31!254;CL:0002321!2.03e-18!248;CL:0000220!5.35e-18!246;CL:0000076!5.39e-13!62;CL:0002078!1.67e-12!44;CL:0002139!2.64e-12!24;CL:0000115!3.57e-12!35;CL:0000071!1.17e-10!18;CL:0002546!1.17e-10!18;CL:0002076!6.06e-10!43;CL:0000213!6.89e-10!57;CL:0000215!6.89e-10!57;CL:0000223!1.35e-08!59;CL:1000449!2.15e-08!16;CL:0002159!7.32e-08!13;CL:0000222!1.54e-07!119;CL:1000497!1.60e-07!18;CL:0002518!1.60e-07!18;CL:0002681!5.08e-07!13;CL:0002584!5.08e-07!13;CL:1000413!7.03e-07!9 | ||
|ontology_enrichment_celltype_v019=CL:0002139;1.83e-12;24!CL:0000115;2.83e-11;36!CL:0000071;8.32e-11;18!CL:0002078;3.15e-09;45!CL:1000449;3.53e-08;15!CL:0002159;4.36e-08;14!CL:0002076;5.00e-08;42!CL:0000076;1.04e-07;63!CL:0000213;1.86e-07;58!CL:0000215;1.86e-07;58!CL:1000497;2.13e-07;17!CL:0002518;2.13e-07;17!CL:1000413;5.50e-07;9!CL:0002681;8.85e-07;12!CL:0002584;8.85e-07;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.91e-31,253;CL:0002321,3.82e-19,250;CL:0002078,1.92e-13,45;CL:0000115,2.73e-13,36;CL:0000076,2.73e-13,63;CL:0002139,1.72e-12,24;CL:0000071,8.12e-11,18;CL:0002546,8.12e-11,18;CL:0000213,9.84e-11,58;CL:0000215,9.84e-11,58;CL:0002076,5.70e-10,42;CL:0000223,1.80e-08,58;CL:1000449,3.78e-08,15;CL:0002159,4.11e-08,14;CL:0000222,4.54e-08,121;CL:1000497,2.24e-07,17;CL:0002518,2.24e-07,17;CL:1000413,5.68e-07,9;CL:0002681,9.44e-07,12;CL:0002584,9.44e-07,12 | |||
|ontology_enrichment_development_v019=CL:0002546;8.32e-11;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
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|ontology_enrichment_uberon_v019=UBERON:0004638;8.32e-11;18!UBERON:0001986;8.32e-11;18!UBERON:0004852;8.32e-11;18!UBERON:0006554;2.70e-09;30!UBERON:0001008;2.70e-09;30!UBERON:0006914;1.36e-08;25!UBERON:0000490;2.98e-08;33!UBERON:0006555;3.53e-08;15!UBERON:0004819;3.53e-08;15!UBERON:0001285;3.53e-08;15!UBERON:0007684;3.53e-08;15!UBERON:0000020;3.69e-08;23!UBERON:0000970;4.75e-08;20!UBERON:0000033;4.77e-08;50!UBERON:0000487;5.96e-08;22!UBERON:0001444;9.52e-08;48!UBERON:0001032;1.04e-07;24!UBERON:0004456;1.04e-07;24!UBERON:0001456;1.11e-07;21!UBERON:0007811;1.14e-07;52!UBERON:0002104;1.48e-07;21!UBERON:0000019;1.49e-07;19!UBERON:0000047;1.49e-07;19!UBERON:0004088;1.49e-07;19!UBERON:0010230;1.49e-07;19!UBERON:0000353;2.21e-07;15!UBERON:0000153;2.86e-07;54!UBERON:0002113;3.70e-07;24!UBERON:0011143;3.70e-07;24!UBERON:0003915;5.50e-07;9!UBERON:0004700;5.50e-07;9!UBERON:0001917;5.50e-07;9!UBERON:0001225;8.85e-07;12!UBERON:0008987;8.85e-07;12!UBERON:0010371;9.00e-07;31 | |||
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| ||
|short_description=p1@SEMA3F | |short_description=p1@SEMA3F | ||
}} | }} |
Latest revision as of 18:11, 18 September 2015
Short description: | p1@SEMA3F |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SEMA3F_5end |
Coexpression cluster: | C1927_Corneal_Esophageal_Urothelial_Endothelial_Bronchial_Sebocyte_Tracheal |
Association with transcript: | 0bp_to_ENST00000413852_5end |
EntrezGene: | SEMA3F |
HGNC: | 10728 |
UniProt: | C9JPG5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.91e-31 | 253 |
embryonic cell | 3.82e-19 | 250 |
meso-epithelial cell | 1.92e-13 | 45 |
endothelial cell | 2.73e-13 | 36 |
squamous epithelial cell | 2.73e-13 | 63 |
endothelial cell of vascular tree | 1.72e-12 | 24 |
blood vessel endothelial cell | 8.12e-11 | 18 |
embryonic blood vessel endothelial progenitor cell | 8.12e-11 | 18 |
lining cell | 9.84e-11 | 58 |
barrier cell | 9.84e-11 | 58 |
endo-epithelial cell | 5.70e-10 | 42 |
endodermal cell | 1.80e-08 | 58 |
epithelial cell of nephron | 3.78e-08 | 15 |
general ecto-epithelial cell | 4.11e-08 | 14 |
mesodermal cell | 4.54e-08 | 121 |
kidney cell | 2.24e-07 | 17 |
kidney epithelial cell | 2.24e-07 | 17 |
endothelial cell of artery | 5.68e-07 | 9 |
kidney cortical cell | 9.44e-07 | 12 |
renal cortical epithelial cell | 9.44e-07 | 12 |