FFCP PHASE1:Hg19::chr17:15555123..15555141,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=10626 | |EntrezGene=10626 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17241 | |HGNC=17241 | ||
|TSSclassifier=strong | |||
|UniProt=Q59EB2 | |UniProt=Q59EB2 | ||
|association_with_transcript=118bp_to_uc002gor.1_5end | |association_with_transcript=118bp_to_uc002gor.1_5end | ||
|cluster_id=chr17:15555123..15555141,- | |||
|coexpression_cluster_id=C139 | |||
|description=CAGE_peak_4_at_TRIM16_5end | |description=CAGE_peak_4_at_TRIM16_5end | ||
|id=chr17:15555123..15555141,- | |id=chr17:15555123..15555141,- | ||
|ontology_enrichment_celltype=CL:0000066!6.28e-30!254;CL:0002076!3.07e-09!43;CL:0002251!9.37e-07!21;CL:0002681!9.87e-07!13;CL:0002584!9.87e-07!13 | |ontology_enrichment_celltype=CL:0000066!6.28e-30!254;CL:0002076!3.07e-09!43;CL:0002251!9.37e-07!21;CL:0002681!9.87e-07!13;CL:0002584!9.87e-07!13 | ||
|ontology_enrichment_celltype_v019=CL:0002681;1.05e-13;12!CL:0002584;1.05e-13;12!CL:1000449;1.13e-10;15!CL:1000497;2.98e-09;17!CL:0002518;2.98e-09;17!CL:1000507;3.13e-09;10!CL:1000494;3.13e-09;10!CL:0000064;5.91e-09;3!CL:0000067;5.91e-09;3!CL:0005012;5.91e-09;3!CL:0002541;5.91e-09;3!CL:0002304;5.91e-09;3!CL:0000239;1.38e-08;3!CL:1000615;1.38e-08;3!CL:0002306;1.38e-08;3!CL:0000349;3.44e-08;19!CL:0000039;2.14e-07;7!CL:0000586;2.14e-07;7 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,5.00e-22,253;CL:0002681,5.36e-14,12;CL:0002584,5.36e-14,12;CL:1000449,6.65e-11,15;CL:0000064,1.79e-09,3;CL:0000067,1.79e-09,3;CL:0005012,1.79e-09,3;CL:0002541,1.79e-09,3;CL:0002304,1.79e-09,3;CL:1000507,1.81e-09,10;CL:1000494,1.81e-09,10;CL:1000497,1.89e-09,17;CL:0002518,1.89e-09,17;CL:0000239,5.21e-09,3;CL:1000615,5.21e-09,3;CL:0002306,5.21e-09,3;CL:0000349,1.90e-08,19;CL:0000076,2.55e-08,63;CL:0000039,2.23e-07,7;CL:0000586,2.23e-07,7;CL:1000746,9.47e-07,7;CL:1000612,9.47e-07,7 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:305!9.03e-17!106;DOID:0050687!5.03e-11!143;DOID:1749!5.80e-07!14 | |||
|ontology_enrichment_disease_v019=DOID:1749;1.12e-11;14 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,1.32e-11,14;DOID:305,4.55e-08,106 | |||
|ontology_enrichment_uberon=UBERON:0000064!1.33e-08!219;UBERON:0004119!8.98e-07!169;UBERON:0000925!8.98e-07!169;UBERON:0006595!8.98e-07!169;UBERON:0001004!9.32e-07!72;UBERON:0001225!9.87e-07!13;UBERON:0008987!9.87e-07!13 | |||
|ontology_enrichment_uberon_v019=UBERON:0001225;1.05e-13;12!UBERON:0008987;1.05e-13;12!UBERON:0001851;1.13e-10;15!UBERON:0006555;1.13e-10;15!UBERON:0000353;1.13e-10;15!UBERON:0004819;1.13e-10;15!UBERON:0001285;1.13e-10;15!UBERON:0007684;1.13e-10;15!UBERON:0005631;8.22e-10;10!UBERON:0000158;8.22e-10;10!UBERON:0004211;3.13e-09;10!UBERON:0009773;3.13e-09;10!UBERON:0001231;3.13e-09;10!UBERON:0004810;3.13e-09;10!UBERON:0001778;5.91e-09;3!UBERON:0003124;5.91e-09;3!UBERON:0000920;5.91e-09;3!UBERON:0001775;5.91e-09;3!UBERON:0006853;1.38e-08;3!UBERON:0007685;1.38e-08;3!UBERON:0004134;1.38e-08;3!UBERON:0001801;1.50e-08;14!UBERON:0000974;1.66e-07;6!UBERON:0002203;1.66e-07;6!UBERON:0001768;1.66e-07;6!UBERON:0002200;1.66e-07;6!UBERON:0006554;3.05e-07;30!UBERON:0001008;3.05e-07;30!UBERON:0003343;8.33e-07;4!UBERON:0000488;8.33e-07;4!UBERON:0004785;8.33e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001225,5.36e-14,12;UBERON:0008987,5.36e-14,12;UBERON:0005631,5.45e-12,14;UBERON:0000158,5.45e-12,14;UBERON:0001851,6.65e-11,15;UBERON:0004211,6.65e-11,15;UBERON:0009773,6.65e-11,15;UBERON:0000353,6.65e-11,15;UBERON:0001231,6.65e-11,15;UBERON:0001285,6.65e-11,15;UBERON:0007684,6.65e-11,15;UBERON:0004208,6.65e-11,15;UBERON:0006555,3.94e-10,16;UBERON:0004819,3.94e-10,16;UBERON:0003124,6.19e-10,7;UBERON:0001778,1.79e-09,3;UBERON:0000920,1.79e-09,3;UBERON:0001775,1.79e-09,3;UBERON:0004810,1.81e-09,10;UBERON:0006853,5.21e-09,3;UBERON:0007685,5.21e-09,3;UBERON:0004134,5.21e-09,3;UBERON:0001801,1.26e-08,14;UBERON:0002203,1.11e-07,6;UBERON:0001768,1.11e-07,6;UBERON:0002200,1.11e-07,6;UBERON:0000488,3.46e-07,4;UBERON:0006554,5.53e-07,47;UBERON:0001008,8.81e-07,48;UBERON:0010532,9.47e-07,7;UBERON:0000074,9.47e-07,7;UBERON:0001229,9.47e-07,7;UBERON:0001230,9.47e-07,7;UBERON:0003220,9.47e-07,7;UBERON:0005749,9.47e-07,7;UBERON:0004199,9.47e-07,7;UBERON:0004209,9.47e-07,7;UBERON:0004198,9.47e-07,7;UBERON:0003343,9.87e-07,4;UBERON:0004785,9.87e-07,4 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,1.22866968250754,2.79120467188971,0.436882744260345,1.58260186937072,0,0,0.672325146451775,0,0,0.487932798790507,0.123121058076788,0,0,0.286235987131057,0,0.125542639594803,0,0,0,0,0,0.154816123316076,0.919421224478927,0.30120591877825,0,0,0.142169232487422,0,0,0,0,0,0,0,0.290796477559129,0,0,0,0,0.309706370895104,0,0,0,0,0,0,0.188242339542605,0.272906150057846,0,0,0,0,0,0,0,0,0,0.622822248995575,0,0,0,0,0.368277635987565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111410456885174,0,0.221533894583621,0.812411591295047,0,0.130059347559878,0,0,0,0,0,0,0.113309342697566,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.79616152611729,1.99556457716308,2.28370442802128,0.0654895377488563,1.09288586487763,1.48313777113772,0,0,0,0,0,0,0.993812036833525,0,0,0,0,0,0.417989933073621,0.516833518338658,0,0.66944122552934,1.20848795132744,0,1.70843440283719,0,0,0,0,0.112611480483322,0,0,0,0,0,2.18047026071267,0,0.25326102332916,0,0.286836620748814,0,0,1.06748995729705,0,0,0.269421344139376,0,0,0.576175924479999,0,0,0,0,0.23486899728753,0.161872944368132,0.280901613404497,0,0,0,0,0.247266929278557,0,0.718618141816238,0.336672227908132,0.250237039743928,0,0,0,0,0,0,0,0,0,0,0.257640540045629,0.18611685633159,0,0.0974370051611986,0.252433774244115,0.0920498986422993,0.323292113637624,0,0,0.169560592310488,2.12586938479627,0.818238361772504,0.860413786167011,0.365921118388786,0.132529768321485,0.929551542956147,0.932949495138334,0.504641701751257,0.36497735907583,1.56449532329816,0.643240938192885,0,0,0,1.0647612003586,0.674338760312407,1.20505514941741,0.55146986366197,0.871517776369625,1.18635309555548,0.808987848960987,0.392442930250692,0.769494313892781,0,0,0,0,0,0,0,0,0.122988438543114,0.686271241194102,1.09750285408626,0,0.603173834469785,0.555530670951178,0.325808305310325,0,1.44331342025273,0.579652024875384,0.117408694235822,0.721832238805369,0,0.570762456703795,3.1608175918371,0,0,0.234004265139238,0,2.81201501960331,1.00789276919316,0.992425680696705,0,0,0,0.492663237895943,0.088048434013226,0,0.144119953416961,0,0,0.381988425558278,0,0,0.102827492703324,0.300343057843917,0,0.448524337381443,0.43596006883328,0.07333828582095,0.517086863031111,0,0,0,0,0.257207374262142,0,0,0,0,0,0,0,0,0.301439377059586,0,0.399891964728228,0,0,0,0.239624855491583,0,0,0,0,0,0,0,0,0,0.254094624222463,0,0,0.502548796003046,0,0,0,0,0.12269149171914,0.500170521059677,0,0,0,0.157702415033935,0.117141414992713,0,0,0,0,0.184369168541703,0,0.979005787313703,0.343143423810856,0,0,0,1.5156378572313,0,1.20956117331872,0,0.153461973288062,0,0.128139149255701,0,0.160853921143607,0,0,0,0,0,0,0.604297247958111,1.00253235151642,0,0.114814448164607,0,0.131124414959424,0.902399225814824,2.0794141018192,0,0,0.527758144464379,0,0.170093705276516,0.431831832204279,3.08454505380579,1.35473218771926,1.50506932156456,1.52925763827023,1.66215201785745,1.56712328305525,0,0,0,0.328014645699706,0,0.206082023295445,0.183138929636687,0.082509499920588,0,0,0,0.096670718292122,0,0,0.137836572484531,0.107420244868274,0,0.0852266274161009,0.178064071293475,0.991709492165869,0.576570202095319,0,0.10115778085555,0,0,0,0,0,0,0,0.143124886741991,0.744316738719335,0,0,0,0,0.318203247925937,0,0,0,0,0,0,0,0.48763373908959,0,0,0.409499734223957,0.141405431953713,0,0,0.66343897524122,0,0,0,0,0,0.281695602532241,0.143411352204052,0,0,0,0,0,0.379473173765715,1.04980416073495,0.192444225451024,1.34060455107157,0,0.188287601553558,1.29151611801369,1.68471475667626,0,0.689170200620878,0,0,0,0,0,0,0,0,0,0.962479855263359,2.45040215981032,0,0,0,0,0.199579371432817,0.383010740264733,0,0,0.842391534340376,0,0,0,0,5.94175877883688,2.62339619348362,0,0,0,0,0,0,0,0,0,0.33307196799782,0,0,0.146508179271894,0,1.11443384277478,0,4.05865624054073,0.890894042497916,3.99308912729002,0,0.281338832821026,0.111308705022906,0,0,0,0,0,21.5786920079547,0,0.311039587661807,0.718946809178615,0.537063524026827,0,0.295930216910801,0,0,0,0,0,0.260427761085233,0.874599999961957,0,0.341380344856499,1.01701460117107,0,0,0,0,0,0,0,0,0,0,0,1.11538995422883,0.0769502585037971,0.455768223388005,0.23056390438806,0,0.108647371922008,2.87101043758728,1.83195186803725,1.5991043280559,0,0,0,0,0,0,0,0,0.421996129056054,0.816164040795739,0.565412285735763,0,0,0,0,0,0,0,0.067401132980677,1.60515529459758,0.468528891450678,0,0.391329237864179,0,0,0,0,0.063186579628488,0,0,0,0.330991955875499,0,0,0.569219092059585,0.138674673013139,0.347119476670262,1.56787835863004,2.52471699083167,0,0,0.387025325156341,0,0.0821154570532092,0.775912131907355,0,0.225980740780532,0,0.19871461170299,0,1.17330829640882,0.961905843018405,0.213452994739353,0.19980960958213,0.288180834308212,0,0,0.14405479798815,0.124252535565433,0.235694034616795,0.271808412147228,0.627617077873999,0.611989305817931,0,0,0,0,0.429765441419957,0,0,0.229160424011684,0,0.599037001496973,0,0,0.268733889946905,0,0,0,0,0,0.295282444544246,0,0,0,0.160753148465019,0.137539436597234,0,0,0,0,0,0,0.0524545881349981,0,0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| ||
|short_description=p4@TRIM16 | |short_description=p4@TRIM16 | ||
}} | }} |
Latest revision as of 18:46, 18 September 2015
Short description: | p4@TRIM16 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_TRIM16_5end |
Coexpression cluster: | C139_astrocytoma_skin_salivary_gall_serous_Mallassezderived_renal |
Association with transcript: | 118bp_to_uc002gor.1_5end |
EntrezGene: | TRIM16 |
HGNC: | 17241 |
UniProt: | Q59EB2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 5.00e-22 | 253 |
kidney cortical cell | 5.36e-14 | 12 |
renal cortical epithelial cell | 5.36e-14 | 12 |
epithelial cell of nephron | 6.65e-11 | 15 |
ciliated cell | 1.79e-09 | 3 |
ciliated epithelial cell | 1.79e-09 | 3 |
multi-ciliated epithelial cell | 1.79e-09 | 3 |
chorionic membrane mesenchymal stem cell | 1.79e-09 | 3 |
non-pigmented ciliary epithelial cell | 1.79e-09 | 3 |
kidney tubule cell | 1.81e-09 | 10 |
nephron tubule epithelial cell | 1.81e-09 | 10 |
kidney cell | 1.89e-09 | 17 |
kidney epithelial cell | 1.89e-09 | 17 |
brush border epithelial cell | 5.21e-09 | 3 |
kidney cortex tubule cell | 5.21e-09 | 3 |
epithelial cell of proximal tubule | 5.21e-09 | 3 |
extraembryonic cell | 1.90e-08 | 19 |
squamous epithelial cell | 2.55e-08 | 63 |
germ line cell | 2.23e-07 | 7 |
germ cell | 2.23e-07 | 7 |
glomerular cell | 9.47e-07 | 7 |
kidney corpuscule cell | 9.47e-07 | 7 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 1.32e-11 | 14 |
carcinoma | 4.55e-08 | 106 |