FFCP PHASE1:Hg19::chr17:39780624..39780631,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3872 | |EntrezGene=3872 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6427 | |HGNC=6427 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-76bp_to_ENST00000493253_5end | |association_with_transcript=-76bp_to_ENST00000493253_5end | ||
|cluster_id=chr17:39780624..39780631,- | |||
|coexpression_cluster_id=C544 | |||
|description=CAGE_peak_8_at_KRT17_5end | |description=CAGE_peak_8_at_KRT17_5end | ||
|id=chr17:39780624..39780631,- | |id=chr17:39780624..39780631,- | ||
|ontology_enrichment_celltype=CL:0000066!3.38e-25!254;CL:0002076!1.22e-24!43;CL:0002368!7.57e-24!13;CL:0000223!1.61e-16!59;CL:0002159!1.06e-14!13;CL:0002202!2.69e-13!9;CL:0002632!2.69e-13!9;CL:0002328!2.38e-11!3;CL:0000068!9.77e-11!3;CL:0000069!9.77e-11!3;CL:0000307!9.77e-11!3;CL:0000377!9.77e-11!3;CL:0000349!1.35e-10!3;CL:0002577!1.35e-10!3;CL:0000362!5.63e-10!8;CL:0000240!1.24e-08!6;CL:0000311!1.24e-08!6;CL:0000079!1.24e-08!6;CL:0000237!1.24e-08!6;CL:0000036!1.24e-08!6;CL:0000357!1.24e-08!6;CL:0000114!1.24e-08!6;CL:0000244!3.11e-08!4;CL:0000731!3.11e-08!4;CL:0002251!4.53e-08!21;CL:0002077!6.97e-08!33;CL:0002327!1.33e-07!4;CL:0000076!1.34e-07!62;CL:0000317!1.66e-07!2;CL:1000448!1.66e-07!2;CL:0002308!1.66e-07!2;CL:0002140!1.66e-07!2 | |ontology_enrichment_celltype=CL:0000066!3.38e-25!254;CL:0002076!1.22e-24!43;CL:0002368!7.57e-24!13;CL:0000223!1.61e-16!59;CL:0002159!1.06e-14!13;CL:0002202!2.69e-13!9;CL:0002632!2.69e-13!9;CL:0002328!2.38e-11!3;CL:0000068!9.77e-11!3;CL:0000069!9.77e-11!3;CL:0000307!9.77e-11!3;CL:0000377!9.77e-11!3;CL:0000349!1.35e-10!3;CL:0002577!1.35e-10!3;CL:0000362!5.63e-10!8;CL:0000240!1.24e-08!6;CL:0000311!1.24e-08!6;CL:0000079!1.24e-08!6;CL:0000237!1.24e-08!6;CL:0000036!1.24e-08!6;CL:0000357!1.24e-08!6;CL:0000114!1.24e-08!6;CL:0000244!3.11e-08!4;CL:0000731!3.11e-08!4;CL:0002251!4.53e-08!21;CL:0002077!6.97e-08!33;CL:0002327!1.33e-07!4;CL:0000076!1.34e-07!62;CL:0000317!1.66e-07!2;CL:1000448!1.66e-07!2;CL:0002308!1.66e-07!2;CL:0002140!1.66e-07!2 | ||
|ontology_enrichment_celltype_v019=CL:0002328;3.10e-30;3!CL:0002202;6.76e-27;9!CL:0002632;6.76e-27;9!CL:0002368;1.87e-26;13!CL:0000307;1.20e-13;3!CL:0002577;1.93e-13;3!CL:0002076;2.60e-13;42!CL:0002252;3.08e-11;1!CL:0000244;1.61e-10;4!CL:0000731;1.61e-10;4!CL:0000197;3.68e-07;6!CL:0000098;3.68e-07;6!CL:0002167;3.68e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0002328,3.11e-30,3;CL:0002202,6.96e-27,9;CL:0002632,6.96e-27,9;CL:0002368,2.01e-26,13;CL:0002076,2.21e-17,42;CL:0000068,1.24e-13,3;CL:0000069,1.24e-13,3;CL:0000307,1.24e-13,3;CL:0000377,1.24e-13,3;CL:0002577,1.93e-13,3;CL:0000223,2.99e-12,58;CL:0002252,3.08e-11,1;CL:0000066,8.76e-11,253;CL:0000244,1.33e-10,4;CL:0000731,1.33e-10,4;CL:0000197,2.96e-07,6;CL:0000098,2.96e-07,6;CL:0002167,2.96e-07,6;CL:0002077,8.05e-07,34 | |||
|ontology_enrichment_development_v019=CL:0000377;1.20e-13;3!CL:0000223;4.91e-09;58 | |||
|ontology_enrichment_disease=DOID:1749!1.91e-09!14 | |ontology_enrichment_disease=DOID:1749!1.91e-09!14 | ||
|ontology_enrichment_disease_v019=DOID:3151;1.05e-10;1!DOID:3149;1.05e-10;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3151,7.46e-11,1;DOID:3149,7.46e-11,1 | |||
|ontology_enrichment_uberon=UBERON:0000065!9.59e-21!53;UBERON:0001004!1.25e-20!72;UBERON:0000072!1.70e-15!46;UBERON:0001737!3.01e-15!9;UBERON:0004119!7.38e-15!169;UBERON:0000925!7.38e-15!169;UBERON:0006595!7.38e-15!169;UBERON:0001557!1.06e-13!19;UBERON:0008947!4.55e-13!38;UBERON:0003258!4.55e-13!38;UBERON:0004815!2.38e-11!3;UBERON:0002031!2.38e-11!3;UBERON:0000077!9.27e-09!130;UBERON:0002185!1.36e-08!4;UBERON:0007196!2.97e-08!14;UBERON:0001558!2.97e-08!14;UBERON:0001987!4.89e-08!4;UBERON:0004340!4.89e-08!4;UBERON:0001041!8.33e-08!98;UBERON:0001911!1.33e-07!4;UBERON:0005333!1.33e-07!4;UBERON:0008425!1.33e-07!4;UBERON:0005311!1.33e-07!4;UBERON:0005631!1.64e-07!14;UBERON:0000158!1.64e-07!14;UBERON:0002419!1.66e-07!2;UBERON:0007771!1.66e-07!2;UBERON:0003297!1.66e-07!2;UBERON:0001821!1.66e-07!2;UBERON:0003487!1.66e-07!2;UBERON:0001820!1.66e-07!2;UBERON:0005089!1.66e-07!2;UBERON:0005088!1.66e-07!2;UBERON:0003124!2.13e-07!7;UBERON:0000064!4.28e-07!219;UBERON:0001007!6.11e-07!155;UBERON:0001555!6.11e-07!155;UBERON:0007026!6.11e-07!155 | |ontology_enrichment_uberon=UBERON:0000065!9.59e-21!53;UBERON:0001004!1.25e-20!72;UBERON:0000072!1.70e-15!46;UBERON:0001737!3.01e-15!9;UBERON:0004119!7.38e-15!169;UBERON:0000925!7.38e-15!169;UBERON:0006595!7.38e-15!169;UBERON:0001557!1.06e-13!19;UBERON:0008947!4.55e-13!38;UBERON:0003258!4.55e-13!38;UBERON:0004815!2.38e-11!3;UBERON:0002031!2.38e-11!3;UBERON:0000077!9.27e-09!130;UBERON:0002185!1.36e-08!4;UBERON:0007196!2.97e-08!14;UBERON:0001558!2.97e-08!14;UBERON:0001987!4.89e-08!4;UBERON:0004340!4.89e-08!4;UBERON:0001041!8.33e-08!98;UBERON:0001911!1.33e-07!4;UBERON:0005333!1.33e-07!4;UBERON:0008425!1.33e-07!4;UBERON:0005311!1.33e-07!4;UBERON:0005631!1.64e-07!14;UBERON:0000158!1.64e-07!14;UBERON:0002419!1.66e-07!2;UBERON:0007771!1.66e-07!2;UBERON:0003297!1.66e-07!2;UBERON:0001821!1.66e-07!2;UBERON:0003487!1.66e-07!2;UBERON:0001820!1.66e-07!2;UBERON:0005089!1.66e-07!2;UBERON:0005088!1.66e-07!2;UBERON:0003124!2.13e-07!7;UBERON:0000064!4.28e-07!219;UBERON:0001007!6.11e-07!155;UBERON:0001555!6.11e-07!155;UBERON:0007026!6.11e-07!155 | ||
|ontology_enrichment_uberon_v019=UBERON:0004815;3.10e-30;3!UBERON:0002031;3.10e-30;3!UBERON:0002185;2.08e-18;5!UBERON:0007196;4.03e-16;15!UBERON:0001558;4.03e-16;15!UBERON:0000485;2.57e-13;7!UBERON:0001987;2.60e-10;4!UBERON:0005178;4.96e-10;34!UBERON:0002224;4.96e-10;34!UBERON:0005181;5.28e-09;35!UBERON:0005911;9.98e-09;36!UBERON:0000365;1.37e-08;5!UBERON:0000486;1.12e-07;12!UBERON:0005910;2.69e-07;6!UBERON:0004807;2.70e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004815,3.11e-30,3;UBERON:0002031,3.11e-30,3;UBERON:0002185,2.08e-18,5;UBERON:0007196,4.10e-16,15;UBERON:0001558,4.10e-16,15;UBERON:0000485,1.79e-10,9;UBERON:0001987,2.60e-10,4;UBERON:0004340,2.60e-10,4;UBERON:0005178,6.73e-10,34;UBERON:0002224,6.73e-10,34;UBERON:0005181,1.33e-09,35;UBERON:0004119,2.25e-09,160;UBERON:0000925,2.25e-09,160;UBERON:0006595,2.25e-09,160;UBERON:0000365,1.18e-08,5;UBERON:0000065,5.15e-08,54;UBERON:0005910,2.37e-07,6;UBERON:0001004,2.77e-07,74;UBERON:0005157,4.98e-07,47;UBERON:0000072,6.09e-07,47 | |||
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| ||
|short_description=p8@KRT17 | |short_description=p8@KRT17 | ||
}} | }} |
Latest revision as of 06:47, 20 September 2015
Short description: | p8@KRT17 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_KRT17_5end |
Coexpression cluster: | C544_nasal_Keratinocyte_Esophageal_Urothelial_Placental_Corneal_Prostate |
Association with transcript: | -76bp_to_ENST00000493253_5end |
EntrezGene: | KRT17 |
HGNC: | 6427 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
bronchial epithelial cell | 3.11e-30 | 3 |
epithelial cell of tracheobronchial tree | 6.96e-27 | 9 |
epithelial cell of lower respiratory tract | 6.96e-27 | 9 |
respiratory epithelial cell | 2.01e-26 | 13 |
endo-epithelial cell | 2.21e-17 | 42 |
duct epithelial cell | 1.24e-13 | 3 |
branched duct epithelial cell | 1.24e-13 | 3 |
tracheal epithelial cell | 1.24e-13 | 3 |
tracheoblast | 1.24e-13 | 3 |
placental epithelial cell | 1.93e-13 | 3 |
endodermal cell | 2.99e-12 | 58 |
epithelial cell of esophagus | 3.08e-11 | 1 |
epithelial cell | 8.76e-11 | 253 |
transitional epithelial cell | 1.33e-10 | 4 |
urothelial cell | 1.33e-10 | 4 |
receptor cell | 2.96e-07 | 6 |
sensory epithelial cell | 2.96e-07 | 6 |
olfactory epithelial cell | 2.96e-07 | 6 |
ecto-epithelial cell | 8.05e-07 | 34 |
Ontology term | p-value | n |
---|---|---|
lower respiratory tract epithelium | 3.11e-30 | 3 |
epithelium of bronchus | 3.11e-30 | 3 |
bronchus | 2.08e-18 | 5 |
tracheobronchial tree | 4.10e-16 | 15 |
lower respiratory tract | 4.10e-16 | 15 |
simple columnar epithelium | 1.79e-10 | 9 |
placenta | 2.60e-10 | 4 |
allantois | 2.60e-10 | 4 |
thoracic cavity element | 6.73e-10 | 34 |
thoracic cavity | 6.73e-10 | 34 |
thoracic segment organ | 1.33e-09 | 35 |
endoderm-derived structure | 2.25e-09 | 160 |
endoderm | 2.25e-09 | 160 |
presumptive endoderm | 2.25e-09 | 160 |
urothelium | 1.18e-08 | 5 |
respiratory tract | 5.15e-08 | 54 |
transitional epithelium | 2.37e-07 | 6 |
respiratory system | 2.77e-07 | 74 |
epithelial fold | 4.98e-07 | 47 |
segment of respiratory tract | 6.09e-07 | 47 |
Ontology term | p-value | n |
---|---|---|
skin squamous cell carcinoma | 7.46e-11 | 1 |
keratoacanthoma | 7.46e-11 | 1 |