FFCP PHASE1:Mm9::chr7:107413155..107413177,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=14777 | |EntrezGene=14777 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=358 | |||
|TSSclassifier=NA | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=101bp_to_NR_033563,uc012fqb.1_5end | |association_with_transcript=101bp_to_NR_033563,uc012fqb.1_5end | ||
|cluster_id=chr7:107413155..107413177,+ | |||
|description=CAGE_peak_1_at_Gpx2-ps1_5end | |description=CAGE_peak_1_at_Gpx2-ps1_5end | ||
|id=chr7:107413155..107413177,+ | |id=chr7:107413155..107413177,+ | ||
|ontology_enrichment_celltype=CL:0000066!1.94e-29!25;CL:0002076!1.59e-25!15;CL:0002563!3.72e-24!9;CL:0002251!3.72e-24!9;CL:0000223!1.11e-21!20;CL:0000239!7.44e-17!6;CL:0000677!7.44e-17!6;CL:0000212!7.44e-17!6;CL:0000584!7.44e-17!6;CL:0000075!2.37e-14!7;CL:0000068!7.09e-10!3;CL:0002202!7.09e-10!3;CL:0000069!7.09e-10!3;CL:0002632!7.09e-10!3;CL:0002368!7.09e-10!3;CL:0000307!7.09e-10!3;CL:0000377!7.09e-10!3;CL:0000473!2.29e-09!3;CL:0000627!2.29e-09!3;CL:0000682!2.29e-09!3;CL:0002250!7.16e-09!3;CL:0000063!8.58e-09!66 | |||
|ontology_enrichment_celltype_v019_2=CL:0002076,3.29e-40,15;CL:0002563,2.38e-37,9;CL:0002251,2.38e-37,9;CL:0000066,3.46e-37,25;CL:0000223,1.02e-29,20;CL:0000239,9.32e-26,6;CL:0000677,9.32e-26,6;CL:0000584,9.32e-26,6;CL:0000075,4.96e-22,7;CL:0000068,1.05e-14,3;CL:0002202,1.05e-14,3;CL:0000069,1.05e-14,3;CL:0002632,1.05e-14,3;CL:0002368,1.05e-14,3;CL:0000307,1.05e-14,3;CL:0000377,1.05e-14,3;CL:0000682,6.72e-14,3;CL:0002250,4.06e-13,3;CL:0002321,3.90e-07,70 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000344!1.63e-35!15;UBERON:0001242!7.58e-30!13;UBERON:0000060!7.58e-30!13;UBERON:0001262!7.58e-30!13;UBERON:0004786!7.58e-30!13;UBERON:0003350!3.72e-24!9;UBERON:0004808!3.72e-24!9;UBERON:0001277!3.72e-24!9;UBERON:0000485!1.10e-23!11;UBERON:0004923!5.14e-21!24;UBERON:0000160!4.25e-15!43;UBERON:0005409!7.78e-13!59;UBERON:0000064!3.17e-10!99;UBERON:0003126!7.09e-10!3;UBERON:0000331!7.09e-10!3;UBERON:0002116!7.09e-10!3;UBERON:0001204!7.09e-10!3;UBERON:0001005!7.09e-10!3;UBERON:0007196!7.09e-10!3;UBERON:0001558!7.09e-10!3;UBERON:0001168!7.09e-10!3;UBERON:0001007!1.56e-09!128;UBERON:0001555!1.56e-09!128;UBERON:0007026!1.56e-09!128;UBERON:0004119!2.66e-09!130;UBERON:0000925!2.66e-09!130;UBERON:0006595!2.66e-09!130;UBERON:0004921!1.05e-07!126;UBERON:0004185!1.05e-07!126;UBERON:0001962!3.44e-07!2;UBERON:0001961!3.44e-07!2;UBERON:0001744!3.44e-07!2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000344,1.11e-55,15;UBERON:0001242,1.16e-46,13;UBERON:0001262,1.16e-46,13;UBERON:0004786,1.16e-46,13;UBERON:0003350,2.38e-37,9;UBERON:0004808,2.38e-37,9;UBERON:0001277,2.38e-37,9;UBERON:0004923,5.04e-34,24;UBERON:0000485,2.31e-30,11;UBERON:0000160,1.60e-18,31;UBERON:0003126,1.05e-14,3;UBERON:0000331,1.05e-14,3;UBERON:0002116,1.05e-14,3;UBERON:0001204,1.05e-14,3;UBERON:0001005,1.05e-14,3;UBERON:0007196,1.05e-14,3;UBERON:0001558,1.05e-14,3;UBERON:0001168,1.05e-14,3;UBERON:0005409,1.43e-11,47;UBERON:0002108,3.71e-11,4;UBERON:0001962,1.82e-10,2;UBERON:0001961,1.82e-10,2;UBERON:0001744,1.82e-10,2;UBERON:0001007,1.54e-08,116;UBERON:0001555,1.54e-08,116;UBERON:0007026,1.54e-08,116;UBERON:0004119,2.40e-08,118;UBERON:0000925,2.40e-08,118;UBERON:0006595,2.40e-08,118;UBERON:0002465,3.01e-07,3 | |||
|phase1_expression=0.160148847104794,39.4342210632478,29.1199513209303,56.5608075143772,77.6388381416838,14.6054966563344,113.30213068883,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,142.233263863339,113.328184847182,49.3839489138917,55.5682975045206,59.6855314539913,292.256019123903,48.1377547841468,150.998477756263,0,0,0,21.6638714813456,36.2391526881513,21.6419517638111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.579728977403356,0,0,0,0,0,0,0,0,0,0,0,0,0,133.141990221897,112.491780270944,125.370062363666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255457055208591,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.793351699990633,0,0,0.128867461322093,0,0,0,0.949058123089023,0,0,0,0,0,0,0.199141273254367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164970122972535,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.119372344003136,0.164140899745061,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.26175594198403,0.259229946583586,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.226730383615211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0.160148847104794,39.4342210632478,29.1199513209303,56.5608075143772,77.6388381416838,14.6054966563344,113.30213068883,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,142.233263863339,113.328184847182,49.3839489138917,55.5682975045206,59.6855314539913,292.256019123903,48.1377547841468,150.998477756263,0,0,0,21.6638714813456,36.2391526881513,21.6419517638111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.579728977403356,0,0,0,0,0,0,0,0,0,0,0,0,0,133.141990221897,112.491780270944,125.370062363666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255457055208591,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.793351699990633,0,0,0.128867461322093,0,0,0,0.949058123089023,0,0,0,0,0,0,0.199141273254367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164970122972535,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.119372344003136,0.164140899745061,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.26175594198403,0.259229946583586,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.226730383615211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p1@Gpx2-ps1 | |short_description=p1@Gpx2-ps1 | ||
}} | }} |
Latest revision as of 14:37, 25 September 2015
Short description: | p1@Gpx2-ps1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Gpx2-ps1_5end |
Coexpression cluster: | MCL_coexpression_mm9:358 |
Association with transcript: | 101bp_to_NR_033563, uc012fqb.1_5end |
EntrezGene: | Gpx2-ps1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endo-epithelial cell | 3.29e-40 | 15 |
intestinal epithelial cell | 2.38e-37 | 9 |
epithelial cell of alimentary canal | 2.38e-37 | 9 |
epithelial cell | 3.46e-37 | 25 |
endodermal cell | 1.02e-29 | 20 |
brush border epithelial cell | 9.32e-26 | 6 |
gut absorptive cell | 9.32e-26 | 6 |
enterocyte | 9.32e-26 | 6 |
columnar/cuboidal epithelial cell | 4.96e-22 | 7 |
duct epithelial cell | 1.05e-14 | 3 |
epithelial cell of tracheobronchial tree | 1.05e-14 | 3 |
branched duct epithelial cell | 1.05e-14 | 3 |
epithelial cell of lower respiratory tract | 1.05e-14 | 3 |
respiratory epithelial cell | 1.05e-14 | 3 |
tracheal epithelial cell | 1.05e-14 | 3 |
tracheoblast | 1.05e-14 | 3 |
M cell of gut | 6.72e-14 | 3 |
intestinal crypt stem cell | 4.06e-13 | 3 |
embryonic cell | 3.90e-07 | 70 |
Ontology term | p-value | n |
---|---|---|
mucosa | 1.11e-55 | 15 |
intestinal mucosa | 1.16e-46 | 13 |
wall of intestine | 1.16e-46 | 13 |
gastrointestinal system mucosa | 1.16e-46 | 13 |
epithelium of mucosa | 2.38e-37 | 9 |
gastrointestinal system epithelium | 2.38e-37 | 9 |
intestinal epithelium | 2.38e-37 | 9 |
organ component layer | 5.04e-34 | 24 |
simple columnar epithelium | 2.31e-30 | 11 |
intestine | 1.60e-18 | 31 |
trachea | 1.05e-14 | 3 |
ileal mucosa | 1.05e-14 | 3 |
ileum | 1.05e-14 | 3 |
mucosa of small intestine | 1.05e-14 | 3 |
respiratory airway | 1.05e-14 | 3 |
tracheobronchial tree | 1.05e-14 | 3 |
lower respiratory tract | 1.05e-14 | 3 |
wall of small intestine | 1.05e-14 | 3 |
gastrointestinal system | 1.43e-11 | 47 |
small intestine | 3.71e-11 | 4 |
gut-associated lymphoid tissue | 1.82e-10 | 2 |
mucosa-associated lymphoid tissue | 1.82e-10 | 2 |
lymphoid tissue | 1.82e-10 | 2 |
digestive system | 1.54e-08 | 116 |
digestive tract | 1.54e-08 | 116 |
primitive gut | 1.54e-08 | 116 |
endoderm-derived structure | 2.40e-08 | 118 |
endoderm | 2.40e-08 | 118 |
presumptive endoderm | 2.40e-08 | 118 |
lymphoid system | 3.01e-07 | 3 |