FF:10536-107G5: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005972 | ||
| | |accession_numbers=CAGE;DRX007847;DRR008719;DRZ000144;DRZ001529;DRZ011494;DRZ012879 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002107,UBERON:0002100,UBERON:0001282,UBERON:0002394,UBERON:0000058,UBERON:0001007,UBERON:0000064,UBERON:0004119,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009569,UBERON:0002368,UBERON:0009842,UBERON:0000353,UBERON:0003704,UBERON:0005177,UBERON:0002365,UBERON:0005172,UBERON:0006925,UBERON:0002530,UBERON:0003928,UBERON:0010317,UBERON:0005173,UBERON:0002417,UBERON:0000949,UBERON:0001280,UBERON:0001171,UBERON:0004647,UBERON:0002294,UBERON:0001173,UBERON:0001172,UBERON:0002330,UBERON:0000916,UBERON:0002423 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000181,CL:0000417,CL:0000668,CL:0000412,CL:0000255,CL:0000182 | |||
|ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:7,DOID:305 | |||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0101120,FF:0100224,FF:0100578,FF:0102842 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score | |||
|fonse_cell_line=FF:0100224,FF:0101120 | |fonse_cell_line=FF:0100224,FF:0101120 | ||
|fonse_cell_line_closure=FF:0100224,FF:0101120 | |fonse_cell_line_closure=FF:0100224,FF:0101120 | ||
| Line 35: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/cholangiocellular%2520carcinoma%2520cell%2520line%253aHuH-28.CNhs11283.10536-107G5.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/cholangiocellular%2520carcinoma%2520cell%2520line%253aHuH-28.CNhs11283.10536-107G5.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/cholangiocellular%2520carcinoma%2520cell%2520line%253aHuH-28.CNhs11283.10536-107G5.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/cholangiocellular%2520carcinoma%2520cell%2520line%253aHuH-28.CNhs11283.10536-107G5.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/cholangiocellular%2520carcinoma%2520cell%2520line%253aHuH-28.CNhs11283.10536-107G5.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10536-107G5 | |id=FF:10536-107G5 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000210;;FF:0102842 | ||
|is_obsolete= | |||
|library_id=CNhs11283 | |||
|library_id_phase_based=2:CNhs11283 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10536 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10536 | |||
|name=cholangiocellular carcinoma cell line:HuH-28 | |name=cholangiocellular carcinoma cell line:HuH-28 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11283,LSID759,release008,COMPLETED | |profile_hcage=CNhs11283,LSID759,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0.081546117668347,0,0.233953078543147,0,0,0.234351920972427,0,-0.147137041216358,-0.282403560576942,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0641656305357917,0,0,0,0,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0.394669951058813,0,0.0566903091848404,0,0.0468626006398675,0,0,0,0,0,0,0.118273419921518,0,0,0,0,0,0,0,-0.0501297606027376,0,0,-0.0504810265732294,0,0,0,0,0,0,0,0.00577174044020169,0,0,0,0,0,0.127696256989732,0,0,0,0.0468626006398675,0.0234313003199337,0,0.00301639002342453,0,0,0,0,0,0,0,0.0638384342705606,0.0916282065455687,0,0.35283108463337,0.0979097511280345,0.374254154868731,-0.00887797142507053,-0.0938985108945775,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.051794904016143,0.0891573798126359,0,0,0,0.0369901759700026,0,0,0,0,0,0 | |||
|repeat_enrich_byname=0,0,0.0468626006398675,0,-0.00887797142507053,0,0.374254154868731,0,0,0,0,0,0,0.35283108463337,0,0,0.0593487628824026,0,0.148166937018818,0.0523043597325971,0,0,-0.138569733847992,0.0468626006398675,0.0891573798126359,0,0,0.0468626006398675,0,0.0891573798126359,0,0,0.494133288818262,0,0.038744828223321,0.0680099902262517,0,0,0,0.414714655823169,-0.305472230898407,0,-0.033566769641669,-0.0214816604375007,0,0,0,0,-0.075568343162415,0,-0.120879483793741,0.113099333932652,0,-0.109169199599834,5.79417474874944e-05,0,0,0,-0.485255293396437,0.5694983364549,0,0,-0.0345004229370743,0.0653445814985819,0,0,0.898067300248748,0,0.244426829662147,-0.149032617073807,0,-0.0121340779030278,0,0,0,0,0,0,0,0.0468626006398675,0.281382583015681,0,0,-0.0574934668214365,0.360899592273794,0,0,0,0,-0.0607506420887289,0,0.0376112698879121,0.0774359360970828,-0.0693534302811772,-0.0052065736641772,-0.0428881879736575,0,-0.255527126370046,-0.0941966435826586,0.570678173081754,0.0638384342705606,-0.147401849371139,0.260740372503802,0.0936008003191482,-0.239127977301795,0.0396143357633071,-0.0787879932702412,-0.039584372864907,-0.0489419652349245,0.442041249863088,0.00274447716722737,0.0468626006398675,0,0.175430248481112,0.153530777149582,0,0.190603044529214,0.155136719290699,-0.0298116079403261,0.0864074586887337,0.127192178539135,-0.0190626690240818,-0.4116453139705,0.0243156000381954,-0.0246064730678639,0,0.694094332389455,0,0.610280575864474,0.0234968174582901,0.0851593299281616,-0.455615942325534,0.110884586301734,0,0.126303114053493,0.094747974259326,0,0.0719418088159061,-0.0621865089355984,0,0,0.0551272817540992,0,0,0,0,0.281382583015681,0.336670777161929,0.0707884328343077,-0.0370360592994758,0,-0.107921323099144,-0.00138394727849744,0.0372717978527606,0,-0.285156055555118,-0.0390785262741113,0,-0.0390333945507584,0,-0.0786761698529858,-0.00877367999534995,0.113459902948305,0.13639381245127,-0.0115842261719577,-0.074162509775008,0.0453268020356354,-0.0955082294959257,-0.0812067302113824,-0.0276388627987123,-0.0881268324752877,0,0.384730715111843,0.123636327125861,-0.0714368496342945,0.0380800914338761,0,-0.00242727641751617,0,-0.111505332475303,0,-0.234714696899398,-0.210137586691452,-0.35013199476805,-0.0925901102152729,0,-0.0187027132147373,0.21685059772488,0,0,-0.00193944514310011,0.0468626006398675,-0.0226708263449073,0.163648022217453,0.338310978550875,-0.0709794664529427,0,-0.0921561554390344,0,0,-0.157428040025472,-0.0092236207572639,0,-0.0062913231283338,0.0985302203654479,0.00606453466917944,-0.0691084727950665,0.0468626006398675,0,0.503621527742992,0,0,0.965006658929402,0.0299025939988735,-0.365091619683509,0.214579815599538,0,0.184025835944924,0,0,0.0182917362908933,0,0.091299801964748,0,0.0468626006398675,0.0396604542214238,-0.0697655123502653,0,0,0,0,0.0468626006398675,0,0,0,0.0173481303411454,0,0,0.0112688773072178,-0.159013827960379,0.306527638167967,0.0614616940860579,0,0,0,0,0.0468626006398675,0,0,0.35283108463337,0.3864433111945,0,-0.0761548150365527,0,0,0,0,0.114572762228313,-0.0755403051049917,0.127696256989732,0.0312295288390624,0.0468626006398675,0,0,0,0.00301639002342453,0,0,0.0680099902262517,0.0872794288147997,-0.0108678564137965,-0.0435850173034743,0,0,0,-0.187797021789155,0,0,0.0891573798126359,0,-0.0360630967337987,0,0,0.0457023854343248,0,-0.345215335643209,-0.0815818795468414,0,0.161917534501792,-0.00473584844249508,0.858251053330655,0,0,0.152821823433958,0,0.0720205795169984,0.0368382915627199,0,0,0.00250652437381679,0,0,0,0,0.00828991591331593,0.195819502256069,0.0119379046073692,0.0680099902262517,0,0,0,0,0,0.0891573798126359,0,0,0,0,-0.128326260726067,-0.00306667684587453,0.0468626006398675,0,0,0,0,0.0234313003199337,0,-0.0241060230789031,-0.178131351567564,0,0,0,0,0.00577174044020169,0,0,0,-0.097171784794511,0,0,0,0,0,-0.0501297606027376,0,0,0,0.163092235336694,-0.564807121153884,0,0,-0.11426989685682,0,0,0,0,0,0,0.00274657425930556,0,0,0,0,0,0,-0.123319086035448,-0.178519252418212,0,0.0468626006398675,0,0,0,0,0,-0.147137041216358,0,0,0,0,0.0138118832807548,0.467906157086293,0,0,0.0228998722005756,0,0.234351920972427,0,0.0468626006398675,0,0,0,0.0468626006398675,0.0445786899063179,0,0.0468626006398675,0,0,0,0,0,0,0,0,0,0,0,0,0.271615667091041,0,-0.0325158116977858,-0.0645004295267673,0,0,-0.168780224138176,0,0,0,0,0,0,0.0132382658777909,0,0,0,0,0,0,0,0.0680099902262517,0,0,0,0.0468626006398675,0,0,0,0,0,0,0.0891573798126359,0,0,0,0,0,0,0.0590031577884438,0,0,0,0,0,0,0,-0.0979578962680575,0,0,0.0129446081877547,0,0,0,0,0.0179831731223509,0,-0.0363136731384689,0.377266484695484,-0.00845697841065129,0,0,0,-0.0309542721625213,0,0,0,0,-0.0199147867790338,0,0,0,0,0,0,0,0.126124807574665,0.0468626006398675,0,0,0.0445786899063179,0,0,0,0,0,0.0891573798126359,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0641656305357917,0,0,0,0,0,0,0,0,0,0,0,0,0.0234313003199337,0,0,0,0,0,0,0,0,0.081546117668347,0,0,0,0,0,0.0468626006398675,0.0468626006398675,0,0,0,0,0,0,0.0873296881725518,0,0.0234313003199337,0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| |||
|rna_box=107 | |rna_box=107 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 78: | ||
|rna_weight_ug=18.01345 | |rna_weight_ug=18.01345 | ||
|sample_age= | |sample_age= | ||
|sample_category=cell lines | |||
|sample_cell_catalog=RCB1943 | |sample_cell_catalog=RCB1943 | ||
|sample_cell_line=HuH-28 | |sample_cell_line=HuH-28 | ||
| Line 69: | Line 91: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.30183609737789e-224!GO:0043231;intracellular membrane-bound organelle;2.15707028481906e-189!GO:0043227;membrane-bound organelle;3.47264565818642e-189!GO:0043226;organelle;4.13850513820046e-185!GO:0043229;intracellular organelle;1.1352475096408e-184!GO:0005737;cytoplasm;4.23432094579142e-175!GO:0044422;organelle part;2.64069128817468e-135!GO:0044446;intracellular organelle part;8.96215622281704e-134!GO:0044444;cytoplasmic part;1.10723616704359e-129!GO:0032991;macromolecular complex;1.19035699466658e-94!GO:0044237;cellular metabolic process;1.50898105887377e-89!GO:0044238;primary metabolic process;5.81694444068021e-88!GO:0043170;macromolecule metabolic process;1.40324199731991e-83!GO:0005515;protein binding;2.44646826062566e-81!GO:0030529;ribonucleoprotein complex;1.58383024663895e-79!GO:0005634;nucleus;4.93520263146062e-75!GO:0044428;nuclear part;1.41952616208668e-71!GO:0043233;organelle lumen;3.76579486260492e-71!GO:0031974;membrane-enclosed lumen;3.76579486260492e-71!GO:0003723;RNA binding;1.31199200646746e-66!GO:0005739;mitochondrion;2.88374628298495e-59!GO:0031090;organelle membrane;7.20547343085749e-53!GO:0019538;protein metabolic process;9.50203633496844e-52!GO:0043283;biopolymer metabolic process;3.05251826858108e-50!GO:0016043;cellular component organization and biogenesis;2.07821463379355e-49!GO:0033036;macromolecule localization;1.92196556131058e-48!GO:0043234;protein complex;2.69794824123829e-48!GO:0044260;cellular macromolecule metabolic process;3.69406447862231e-47!GO:0006396;RNA processing;3.93907471079345e-47!GO:0044267;cellular protein metabolic process;6.26115741022464e-47!GO:0015031;protein transport;1.92475100687071e-46!GO:0006412;translation;2.22262484837246e-45!GO:0005840;ribosome;1.18953793109252e-44!GO:0008104;protein localization;3.53613336276919e-44!GO:0045184;establishment of protein localization;6.29823110009624e-44!GO:0010467;gene expression;3.69657512981052e-43!GO:0031981;nuclear lumen;1.00351626059336e-42!GO:0044429;mitochondrial part;3.22925538114287e-41!GO:0016071;mRNA metabolic process;1.91241487116522e-39!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.49937314801657e-39!GO:0003735;structural constituent of ribosome;1.77338362759887e-38!GO:0031967;organelle envelope;2.17859640205331e-38!GO:0031975;envelope;2.55609326994902e-38!GO:0005829;cytosol;2.56028014728085e-37!GO:0046907;intracellular transport;2.47278310804623e-36!GO:0009058;biosynthetic process;4.50259322575998e-35!GO:0008380;RNA splicing;6.91112231959485e-35!GO:0009059;macromolecule biosynthetic process;1.66763116875695e-34!GO:0033279;ribosomal subunit;5.10269996200441e-34!GO:0044249;cellular biosynthetic process;1.39444089153612e-33!GO:0006397;mRNA processing;1.76220933129527e-33!GO:0006886;intracellular protein transport;1.24283558141135e-31!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.411485787372e-28!GO:0065003;macromolecular complex assembly;3.58251834259187e-28!GO:0005740;mitochondrial envelope;1.35233174869225e-26!GO:0005654;nucleoplasm;1.84431509431496e-26!GO:0006996;organelle organization and biogenesis;3.54624505438396e-25!GO:0005681;spliceosome;4.02630686316823e-25!GO:0031966;mitochondrial membrane;5.84688802371998e-25!GO:0022607;cellular component assembly;6.31738525404382e-25!GO:0051649;establishment of cellular localization;4.70449388841897e-24!GO:0019866;organelle inner membrane;5.21184840780666e-24!GO:0005830;cytosolic ribosome (sensu Eukaryota);5.40497142679318e-24!GO:0043228;non-membrane-bound organelle;1.43586534150018e-23!GO:0043232;intracellular non-membrane-bound organelle;1.43586534150018e-23!GO:0051641;cellular localization;1.5249940875629e-23!GO:0012505;endomembrane system;3.64408253737453e-23!GO:0006119;oxidative phosphorylation;6.63542690060409e-23!GO:0006259;DNA metabolic process;1.60380168881659e-22!GO:0005743;mitochondrial inner membrane;2.9492846233357e-22!GO:0000166;nucleotide binding;5.2141772462853e-22!GO:0044451;nucleoplasm part;1.34905905830723e-21!GO:0003676;nucleic acid binding;2.14107837049415e-21!GO:0005783;endoplasmic reticulum;2.80233631653109e-21!GO:0044445;cytosolic part;1.97570481702384e-20!GO:0006457;protein folding;2.104797199424e-20!GO:0006512;ubiquitin cycle;2.93276803832462e-20!GO:0007049;cell cycle;3.59141061356016e-20!GO:0016070;RNA metabolic process;4.02347350269684e-20!GO:0016462;pyrophosphatase activity;6.66931600554267e-20!GO:0043285;biopolymer catabolic process;7.30456901808449e-20!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.03928561466091e-19!GO:0016817;hydrolase activity, acting on acid anhydrides;1.67837720580158e-19!GO:0017111;nucleoside-triphosphatase activity;1.78372075768191e-19!GO:0044455;mitochondrial membrane part;5.61884278458276e-19!GO:0016874;ligase activity;5.6929544254075e-19!GO:0008134;transcription factor binding;6.44871102299343e-19!GO:0009057;macromolecule catabolic process;2.11379521883703e-18!GO:0044265;cellular macromolecule catabolic process;3.80232151549811e-18!GO:0030163;protein catabolic process;4.60700837145283e-18!GO:0048770;pigment granule;5.20397032298537e-18!GO:0042470;melanosome;5.20397032298537e-18!GO:0000502;proteasome complex (sensu Eukaryota);6.71959678783674e-18!GO:0044432;endoplasmic reticulum part;8.43341502676058e-18!GO:0015935;small ribosomal subunit;1.1186546996424e-17!GO:0051603;proteolysis involved in cellular protein catabolic process;1.25741907467823e-17!GO:0015934;large ribosomal subunit;2.15038294399747e-17!GO:0019941;modification-dependent protein catabolic process;2.5767871825293e-17!GO:0043632;modification-dependent macromolecule catabolic process;2.5767871825293e-17!GO:0022618;protein-RNA complex assembly;3.4998951847928e-17!GO:0005730;nucleolus;3.65623637453996e-17!GO:0044257;cellular protein catabolic process;4.16271588005707e-17!GO:0006511;ubiquitin-dependent protein catabolic process;4.55656780747122e-17!GO:0031980;mitochondrial lumen;6.15688432504944e-17!GO:0005759;mitochondrial matrix;6.15688432504944e-17!GO:0005794;Golgi apparatus;3.30466432724322e-16!GO:0005746;mitochondrial respiratory chain;3.59211793882526e-16!GO:0006605;protein targeting;4.42166312842461e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;5.67088829455761e-16!GO:0051082;unfolded protein binding;6.14397617125263e-16!GO:0048193;Golgi vesicle transport;3.15417230348803e-15!GO:0032553;ribonucleotide binding;3.32459591862946e-15!GO:0032555;purine ribonucleotide binding;3.32459591862946e-15!GO:0012501;programmed cell death;4.24067298181889e-15!GO:0017076;purine nucleotide binding;6.612657425968e-15!GO:0050136;NADH dehydrogenase (quinone) activity;6.84707841261401e-15!GO:0003954;NADH dehydrogenase activity;6.84707841261401e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;6.84707841261401e-15!GO:0006974;response to DNA damage stimulus;7.75395108351216e-15!GO:0006915;apoptosis;1.03697698453842e-14!GO:0016192;vesicle-mediated transport;1.29584993392048e-14!GO:0051186;cofactor metabolic process;1.39879505587572e-14!GO:0043412;biopolymer modification;1.64163131667794e-14!GO:0044248;cellular catabolic process;2.2324239842902e-14!GO:0008135;translation factor activity, nucleic acid binding;3.19532928266657e-14!GO:0008219;cell death;6.43262566399487e-14!GO:0016265;death;6.43262566399487e-14!GO:0022402;cell cycle process;6.91856883136038e-14!GO:0005761;mitochondrial ribosome;2.44734627206288e-13!GO:0000313;organellar ribosome;2.44734627206288e-13!GO:0042775;organelle ATP synthesis coupled electron transport;3.94393735735682e-13!GO:0042773;ATP synthesis coupled electron transport;3.94393735735682e-13!GO:0042175;nuclear envelope-endoplasmic reticulum network;6.4750956307408e-13!GO:0006464;protein modification process;6.82137572734705e-13!GO:0030964;NADH dehydrogenase complex (quinone);6.82137572734705e-13!GO:0045271;respiratory chain complex I;6.82137572734705e-13!GO:0005747;mitochondrial respiratory chain complex I;6.82137572734705e-13!GO:0006913;nucleocytoplasmic transport;9.52433647495427e-13!GO:0000398;nuclear mRNA splicing, via spliceosome;1.40669323533424e-12!GO:0000375;RNA splicing, via transesterification reactions;1.40669323533424e-12!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.40669323533424e-12!GO:0005635;nuclear envelope;1.45093782545518e-12!GO:0005789;endoplasmic reticulum membrane;1.64877726813402e-12!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.69616884960974e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.09345727675647e-12!GO:0051169;nuclear transport;2.17704649451352e-12!GO:0006281;DNA repair;2.39358880663507e-12!GO:0042254;ribosome biogenesis and assembly;2.95955402978441e-12!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);3.76632657338459e-12!GO:0000278;mitotic cell cycle;6.91241554748503e-12!GO:0031965;nuclear membrane;8.69028068826675e-12!GO:0005524;ATP binding;9.84348940719886e-12!GO:0032559;adenyl ribonucleotide binding;1.1148822606948e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.18508968295621e-11!GO:0003712;transcription cofactor activity;1.35198425593742e-11!GO:0006732;coenzyme metabolic process;1.55783695772061e-11!GO:0030554;adenyl nucleotide binding;2.78759590800182e-11!GO:0043687;post-translational protein modification;4.32823635866941e-11!GO:0006260;DNA replication;5.71652458935229e-11!GO:0016887;ATPase activity;7.29867448534936e-11!GO:0005793;ER-Golgi intermediate compartment;8.8976076551461e-11!GO:0016604;nuclear body;9.66348373860235e-11!GO:0003743;translation initiation factor activity;1.12099006479967e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.24008146276031e-10!GO:0005768;endosome;1.35480244365152e-10!GO:0008639;small protein conjugating enzyme activity;1.68293301072653e-10!GO:0044453;nuclear membrane part;1.75913549468538e-10!GO:0006366;transcription from RNA polymerase II promoter;2.64082161128308e-10!GO:0042623;ATPase activity, coupled;2.73760346764446e-10!GO:0019787;small conjugating protein ligase activity;3.0576310226278e-10!GO:0009719;response to endogenous stimulus;3.21974864240161e-10!GO:0017038;protein import;3.9336680970776e-10!GO:0004842;ubiquitin-protein ligase activity;4.00578656417525e-10!GO:0050794;regulation of cellular process;4.07533316888815e-10!GO:0009056;catabolic process;5.37553128583106e-10!GO:0009055;electron carrier activity;5.40063397168229e-10!GO:0016879;ligase activity, forming carbon-nitrogen bonds;7.24072664547642e-10!GO:0006413;translational initiation;7.71890471159731e-10!GO:0008565;protein transporter activity;8.29473207465076e-10!GO:0009259;ribonucleotide metabolic process;1.38796838917027e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.42891950749763e-09!GO:0051726;regulation of cell cycle;1.45800173659947e-09!GO:0006399;tRNA metabolic process;1.51879339651974e-09!GO:0016607;nuclear speck;2.10360266271133e-09!GO:0016881;acid-amino acid ligase activity;2.74029850022369e-09!GO:0000074;regulation of progression through cell cycle;2.8618868079264e-09!GO:0015986;ATP synthesis coupled proton transport;4.80991295329507e-09!GO:0015985;energy coupled proton transport, down electrochemical gradient;4.80991295329507e-09!GO:0043067;regulation of programmed cell death;5.21171168406534e-09!GO:0048523;negative regulation of cellular process;5.26908033049111e-09!GO:0042981;regulation of apoptosis;5.36964663705919e-09!GO:0006446;regulation of translational initiation;6.5461383058048e-09!GO:0006403;RNA localization;6.6018049007881e-09!GO:0050657;nucleic acid transport;6.77594338808151e-09!GO:0051236;establishment of RNA localization;6.77594338808151e-09!GO:0050658;RNA transport;6.77594338808151e-09!GO:0006163;purine nucleotide metabolic process;6.80070025467873e-09!GO:0006461;protein complex assembly;7.61853752767878e-09!GO:0009150;purine ribonucleotide metabolic process;1.04072191619141e-08!GO:0005643;nuclear pore;1.08525693995456e-08!GO:0009260;ribonucleotide biosynthetic process;1.1664108702888e-08!GO:0051188;cofactor biosynthetic process;1.76402093513648e-08!GO:0006164;purine nucleotide biosynthetic process;1.98940399989324e-08!GO:0019829;cation-transporting ATPase activity;2.1608212417672e-08!GO:0005694;chromosome;2.24431788523953e-08!GO:0009152;purine ribonucleotide biosynthetic process;2.9019136106097e-08!GO:0022403;cell cycle phase;3.29087584806172e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;3.86650518053656e-08!GO:0004812;aminoacyl-tRNA ligase activity;3.86650518053656e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;3.86650518053656e-08!GO:0005839;proteasome core complex (sensu Eukaryota);4.74810130741203e-08!GO:0043069;negative regulation of programmed cell death;5.12669056718503e-08!GO:0009199;ribonucleoside triphosphate metabolic process;5.42838315455759e-08!GO:0009060;aerobic respiration;5.56092994068865e-08!GO:0006364;rRNA processing;5.95057842404155e-08!GO:0006888;ER to Golgi vesicle-mediated transport;6.96490435032432e-08!GO:0009142;nucleoside triphosphate biosynthetic process;7.25629057874904e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;7.25629057874904e-08!GO:0044440;endosomal part;7.49621508477119e-08!GO:0010008;endosome membrane;7.49621508477119e-08!GO:0009141;nucleoside triphosphate metabolic process;7.52518792497247e-08!GO:0065002;intracellular protein transport across a membrane;7.89237127985505e-08!GO:0006754;ATP biosynthetic process;8.6233994609656e-08!GO:0006753;nucleoside phosphate metabolic process;8.6233994609656e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;9.36968625967335e-08!GO:0009144;purine nucleoside triphosphate metabolic process;9.36968625967335e-08!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;9.79116104960859e-08!GO:0046034;ATP metabolic process;9.8651558851425e-08!GO:0016072;rRNA metabolic process;9.95813454953663e-08!GO:0043038;amino acid activation;1.02440447091886e-07!GO:0006418;tRNA aminoacylation for protein translation;1.02440447091886e-07!GO:0043039;tRNA aminoacylation;1.02440447091886e-07!GO:0044431;Golgi apparatus part;1.11557328492648e-07!GO:0051301;cell division;1.12254475453987e-07!GO:0043066;negative regulation of apoptosis;1.13614524476718e-07!GO:0051276;chromosome organization and biogenesis;1.20077182720831e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.24777533032083e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.24777533032083e-07!GO:0045333;cellular respiration;1.35951951058593e-07!GO:0004386;helicase activity;1.41897908209758e-07!GO:0005788;endoplasmic reticulum lumen;1.45310370542749e-07!GO:0030532;small nuclear ribonucleoprotein complex;1.48148967928185e-07!GO:0046930;pore complex;1.59695358583885e-07!GO:0008026;ATP-dependent helicase activity;1.61867478343484e-07!GO:0005770;late endosome;1.85291793360057e-07!GO:0006606;protein import into nucleus;1.87476376890682e-07!GO:0031324;negative regulation of cellular metabolic process;1.9977869913579e-07!GO:0044427;chromosomal part;2.09165193201209e-07!GO:0048519;negative regulation of biological process;2.28123858596385e-07!GO:0003924;GTPase activity;2.36489901644106e-07!GO:0051170;nuclear import;2.52441242419891e-07!GO:0051246;regulation of protein metabolic process;2.77554110971912e-07!GO:0016564;transcription repressor activity;2.86786153626557e-07!GO:0016787;hydrolase activity;2.96509752647452e-07!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;2.96509752647452e-07!GO:0015078;hydrogen ion transmembrane transporter activity;3.46590421126881e-07!GO:0000087;M phase of mitotic cell cycle;3.52221591268639e-07!GO:0004298;threonine endopeptidase activity;3.55321416410541e-07!GO:0003714;transcription corepressor activity;3.86648768763535e-07!GO:0051028;mRNA transport;3.88636694317423e-07!GO:0050789;regulation of biological process;4.47264681043383e-07!GO:0005667;transcription factor complex;4.98034439469526e-07!GO:0009108;coenzyme biosynthetic process;5.02149964601031e-07!GO:0007067;mitosis;5.39400430507406e-07!GO:0032446;protein modification by small protein conjugation;5.59688720253665e-07!GO:0065004;protein-DNA complex assembly;6.58169958992029e-07!GO:0007005;mitochondrion organization and biogenesis;7.13975324649095e-07!GO:0005773;vacuole;7.21607070776246e-07!GO:0007249;I-kappaB kinase/NF-kappaB cascade;7.21607070776246e-07!GO:0016567;protein ubiquitination;7.59710511380947e-07!GO:0016469;proton-transporting two-sector ATPase complex;8.2808105801097e-07!GO:0006325;establishment and/or maintenance of chromatin architecture;8.58073635937302e-07!GO:0006916;anti-apoptosis;9.97958305432448e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.07574074074292e-06!GO:0048475;coated membrane;1.39967011738843e-06!GO:0030117;membrane coat;1.39967011738843e-06!GO:0043566;structure-specific DNA binding;1.39967011738843e-06!GO:0006099;tricarboxylic acid cycle;1.6557811127218e-06!GO:0046356;acetyl-CoA catabolic process;1.6557811127218e-06!GO:0003697;single-stranded DNA binding;1.70571292209163e-06!GO:0006323;DNA packaging;1.96527260504725e-06!GO:0043623;cellular protein complex assembly;2.25275651091546e-06!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;2.30900844457081e-06!GO:0000151;ubiquitin ligase complex;2.95488632990742e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;3.0726448123706e-06!GO:0000245;spliceosome assembly;3.09831843964808e-06!GO:0006752;group transfer coenzyme metabolic process;3.2322267505853e-06!GO:0006793;phosphorus metabolic process;4.0904956216741e-06!GO:0006796;phosphate metabolic process;4.0904956216741e-06!GO:0045259;proton-transporting ATP synthase complex;4.49931410287896e-06!GO:0005769;early endosome;4.68569936680536e-06!GO:0006084;acetyl-CoA metabolic process;4.99594519430029e-06!GO:0005525;GTP binding;5.10792601574995e-06!GO:0045786;negative regulation of progression through cell cycle;5.10792601574995e-06!GO:0019222;regulation of metabolic process;6.15697796524163e-06!GO:0016023;cytoplasmic membrane-bound vesicle;7.11323174953613e-06!GO:0031988;membrane-bound vesicle;7.27356574447552e-06!GO:0051329;interphase of mitotic cell cycle;7.27356574447552e-06!GO:0051325;interphase;7.47442636713331e-06!GO:0030120;vesicle coat;7.48574833244925e-06!GO:0030662;coated vesicle membrane;7.48574833244925e-06!GO:0006613;cotranslational protein targeting to membrane;8.34602668638504e-06!GO:0005798;Golgi-associated vesicle;8.81995521837434e-06!GO:0007243;protein kinase cascade;8.98023734299007e-06!GO:0016044;membrane organization and biogenesis;9.34028284155509e-06!GO:0009117;nucleotide metabolic process;9.57537014382444e-06!GO:0009892;negative regulation of metabolic process;9.59557034098671e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.09854662271366e-05!GO:0031982;vesicle;1.09854662271366e-05!GO:0015630;microtubule cytoskeleton;1.13416215834801e-05!GO:0000323;lytic vacuole;1.21100805512832e-05!GO:0005764;lysosome;1.21100805512832e-05!GO:0051427;hormone receptor binding;1.22175703947111e-05!GO:0051789;response to protein stimulus;1.24277072776376e-05!GO:0006986;response to unfolded protein;1.24277072776376e-05!GO:0008654;phospholipid biosynthetic process;1.25979937925378e-05!GO:0031410;cytoplasmic vesicle;1.38090455369739e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.38413956412577e-05!GO:0051187;cofactor catabolic process;1.41308029919731e-05!GO:0000139;Golgi membrane;1.5852394637445e-05!GO:0016310;phosphorylation;1.63680319066381e-05!GO:0045454;cell redox homeostasis;1.7144188919748e-05!GO:0009109;coenzyme catabolic process;2.16378563092343e-05!GO:0008361;regulation of cell size;2.18451769479674e-05!GO:0031252;leading edge;2.20685519099513e-05!GO:0006091;generation of precursor metabolites and energy;2.38016036897595e-05!GO:0035257;nuclear hormone receptor binding;2.64667645162779e-05!GO:0048522;positive regulation of cellular process;2.90109315496446e-05!GO:0032561;guanyl ribonucleotide binding;3.22769049470445e-05!GO:0019001;guanyl nucleotide binding;3.22769049470445e-05!GO:0003713;transcription coactivator activity;3.39488415808518e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;3.42524325930496e-05!GO:0016568;chromatin modification;3.62627990271927e-05!GO:0030867;rough endoplasmic reticulum membrane;3.89604151098407e-05!GO:0006261;DNA-dependent DNA replication;4.23001878659023e-05!GO:0016049;cell growth;4.37658025615899e-05!GO:0005762;mitochondrial large ribosomal subunit;4.4192967902812e-05!GO:0000315;organellar large ribosomal subunit;4.4192967902812e-05!GO:0016481;negative regulation of transcription;5.10757810853386e-05!GO:0016740;transferase activity;5.46586193427349e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;5.97042880904814e-05!GO:0000279;M phase;7.31409544203126e-05!GO:0006333;chromatin assembly or disassembly;8.28200830929041e-05!GO:0016563;transcription activator activity;8.50082889315113e-05!GO:0001558;regulation of cell growth;8.53225975524623e-05!GO:0006612;protein targeting to membrane;8.62950938893272e-05!GO:0033116;ER-Golgi intermediate compartment membrane;9.80087537240379e-05!GO:0003724;RNA helicase activity;0.000103436053268707!GO:0016779;nucleotidyltransferase activity;0.000108982175874993!GO:0043021;ribonucleoprotein binding;0.000109163320002054!GO:0051168;nuclear export;0.00011984372432482!GO:0003729;mRNA binding;0.000125539844137263!GO:0000785;chromatin;0.000128272485839788!GO:0046489;phosphoinositide biosynthetic process;0.000129574799003849!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000135167762771179!GO:0005657;replication fork;0.000145165055113499!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000173828048694546!GO:0016859;cis-trans isomerase activity;0.000193789346803817!GO:0005791;rough endoplasmic reticulum;0.000223332275281053!GO:0008250;oligosaccharyl transferase complex;0.000224563746723428!GO:0006352;transcription initiation;0.000227176211437106!GO:0019867;outer membrane;0.000236663031589904!GO:0004576;oligosaccharyl transferase activity;0.000237151039199461!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000247932959514825!GO:0031968;organelle outer membrane;0.000250366334656138!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000276989315862589!GO:0015399;primary active transmembrane transporter activity;0.000276989315862589!GO:0046474;glycerophospholipid biosynthetic process;0.000308098509420426!GO:0016363;nuclear matrix;0.000312114425559471!GO:0000314;organellar small ribosomal subunit;0.000312854780995668!GO:0005763;mitochondrial small ribosomal subunit;0.000312854780995668!GO:0005813;centrosome;0.00032071663880884!GO:0030176;integral to endoplasmic reticulum membrane;0.00036443083485535!GO:0031072;heat shock protein binding;0.000378055587118243!GO:0019899;enzyme binding;0.000380543022093826!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000409977061364019!GO:0031323;regulation of cellular metabolic process;0.000473860971953278!GO:0015980;energy derivation by oxidation of organic compounds;0.000482305574638519!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00050214031934753!GO:0005815;microtubule organizing center;0.000554866424778413!GO:0016491;oxidoreductase activity;0.000557603413649348!GO:0005048;signal sequence binding;0.000561321162734701!GO:0005741;mitochondrial outer membrane;0.000593522827498822!GO:0003690;double-stranded DNA binding;0.000631503475518086!GO:0005885;Arp2/3 protein complex;0.000632399056055127!GO:0006891;intra-Golgi vesicle-mediated transport;0.000655451459345713!GO:0031902;late endosome membrane;0.000698058808456099!GO:0016853;isomerase activity;0.00074617901001835!GO:0003899;DNA-directed RNA polymerase activity;0.000749756209502203!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000830157859855754!GO:0065007;biological regulation;0.000860140546752852!GO:0030521;androgen receptor signaling pathway;0.000929780575527164!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000946371923058681!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.000964240792233374!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000994860575658728!GO:0009165;nucleotide biosynthetic process;0.00101385084702204!GO:0006414;translational elongation;0.00114968328973425!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00137509420984895!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00137509420984895!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00137509420984895!GO:0008186;RNA-dependent ATPase activity;0.00145096302838385!GO:0048487;beta-tubulin binding;0.00147011439682897!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00154598271965451!GO:0005774;vacuolar membrane;0.00155374016204811!GO:0006402;mRNA catabolic process;0.00166144176340538!GO:0035258;steroid hormone receptor binding;0.00168793088981138!GO:0000059;protein import into nucleus, docking;0.00175328475864609!GO:0048518;positive regulation of biological process;0.00175412189076692!GO:0007040;lysosome organization and biogenesis;0.00175493203920231!GO:0018196;peptidyl-asparagine modification;0.00177040502811726!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00177040502811726!GO:0003711;transcription elongation regulator activity;0.00183896999859647!GO:0030384;phosphoinositide metabolic process;0.00184434065106643!GO:0043681;protein import into mitochondrion;0.00184915686277453!GO:0007051;spindle organization and biogenesis;0.00193481829038283!GO:0051052;regulation of DNA metabolic process;0.00193481829038283!GO:0040008;regulation of growth;0.00196858640904339!GO:0048468;cell development;0.00197312435783857!GO:0016272;prefoldin complex;0.00198898743893205!GO:0030518;steroid hormone receptor signaling pathway;0.00198952380092423!GO:0006897;endocytosis;0.0020147722688069!GO:0010324;membrane invagination;0.0020147722688069!GO:0006626;protein targeting to mitochondrion;0.0020147722688069!GO:0006950;response to stress;0.0020147722688069!GO:0048471;perinuclear region of cytoplasm;0.00202112930655993!GO:0006350;transcription;0.00202112930655993!GO:0005905;coated pit;0.00211621815806102!GO:0043433;negative regulation of transcription factor activity;0.00212443267012373!GO:0000049;tRNA binding;0.00212593453006076!GO:0006383;transcription from RNA polymerase III promoter;0.00221888816861961!GO:0006506;GPI anchor biosynthetic process;0.00246687704508963!GO:0008033;tRNA processing;0.00249169807226329!GO:0006818;hydrogen transport;0.00250807308075848!GO:0006839;mitochondrial transport;0.00253074132662145!GO:0046467;membrane lipid biosynthetic process;0.0025979132158234!GO:0007050;cell cycle arrest;0.00262233862245839!GO:0006650;glycerophospholipid metabolic process;0.00265696031262775!GO:0051540;metal cluster binding;0.00274929061136316!GO:0051536;iron-sulfur cluster binding;0.00274929061136316!GO:0000082;G1/S transition of mitotic cell cycle;0.00282455102971971!GO:0043492;ATPase activity, coupled to movement of substances;0.00296274607973316!GO:0048500;signal recognition particle;0.0030105968735959!GO:0007006;mitochondrial membrane organization and biogenesis;0.0031093282224813!GO:0044262;cellular carbohydrate metabolic process;0.00328471362799235!GO:0030133;transport vesicle;0.00341048800037396!GO:0030132;clathrin coat of coated pit;0.00350563954054882!GO:0006505;GPI anchor metabolic process;0.00353701413677948!GO:0051087;chaperone binding;0.00354335152225313!GO:0051059;NF-kappaB binding;0.00355380837318673!GO:0015992;proton transport;0.00365473280171744!GO:0065009;regulation of a molecular function;0.00371332020482811!GO:0004004;ATP-dependent RNA helicase activity;0.00371332020482811!GO:0006302;double-strand break repair;0.00380012372154328!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00381410463549981!GO:0045892;negative regulation of transcription, DNA-dependent;0.00409280291023182!GO:0030137;COPI-coated vesicle;0.00412937415686025!GO:0007033;vacuole organization and biogenesis;0.0041838018260037!GO:0000075;cell cycle checkpoint;0.00424027953982102!GO:0006334;nucleosome assembly;0.00429684662038755!GO:0006892;post-Golgi vesicle-mediated transport;0.00430080677354723!GO:0044437;vacuolar part;0.00438981055165194!GO:0043065;positive regulation of apoptosis;0.00447902287531553!GO:0008312;7S RNA binding;0.00448996915604629!GO:0016251;general RNA polymerase II transcription factor activity;0.00456422843638153!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00470086057584356!GO:0045047;protein targeting to ER;0.00470086057584356!GO:0006497;protein amino acid lipidation;0.00477109551290278!GO:0031901;early endosome membrane;0.00482093376704978!GO:0031497;chromatin assembly;0.00490333317750926!GO:0005819;spindle;0.00490333317750926!GO:0019843;rRNA binding;0.00494915354318192!GO:0045187;regulation of circadian sleep/wake cycle, sleep;0.00495465796725824!GO:0004667;prostaglandin-D synthase activity;0.00495465796725824!GO:0050802;circadian sleep/wake cycle, sleep;0.00495465796725824!GO:0022410;circadian sleep/wake cycle process;0.00495465796725824!GO:0042749;regulation of circadian sleep/wake cycle;0.00495465796725824!GO:0050681;androgen receptor binding;0.00495465796725824!GO:0005765;lysosomal membrane;0.00498784649672644!GO:0043068;positive regulation of programmed cell death;0.00527088817699983!GO:0003746;translation elongation factor activity;0.00531012742976295!GO:0030880;RNA polymerase complex;0.00536419383277013!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00537118196553309!GO:0008139;nuclear localization sequence binding;0.00539779638066359!GO:0045045;secretory pathway;0.00563625653079386!GO:0007010;cytoskeleton organization and biogenesis;0.00571004425039477!GO:0044452;nucleolar part;0.00572073893465275!GO:0045936;negative regulation of phosphate metabolic process;0.00634405690398212!GO:0008383;manganese superoxide dismutase activity;0.00637150421144443!GO:0001315;age-dependent response to reactive oxygen species;0.00637150421144443!GO:0006672;ceramide metabolic process;0.006469267570089!GO:0030663;COPI coated vesicle membrane;0.00655589147485386!GO:0030126;COPI vesicle coat;0.00655589147485386!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00667944192874263!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00667944192874263!GO:0006401;RNA catabolic process;0.006763363768427!GO:0042802;identical protein binding;0.00678527364994724!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00693241096553458!GO:0051252;regulation of RNA metabolic process;0.00708061653655382!GO:0001726;ruffle;0.00719036062535737!GO:0003682;chromatin binding;0.00736652525978502!GO:0010468;regulation of gene expression;0.00737012207157227!GO:0006405;RNA export from nucleus;0.00786799244374019!GO:0046519;sphingoid metabolic process;0.00794741244657288!GO:0030134;ER to Golgi transport vesicle;0.00804157985755!GO:0015631;tubulin binding;0.0080725769729605!GO:0003684;damaged DNA binding;0.00809187721439251!GO:0016197;endosome transport;0.00810205126907437!GO:0043022;ribosome binding;0.00812760285057381!GO:0043284;biopolymer biosynthetic process;0.00818789785163635!GO:0030659;cytoplasmic vesicle membrane;0.00828923139098443!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00875832172134297!GO:0045792;negative regulation of cell size;0.0088442360306667!GO:0006509;membrane protein ectodomain proteolysis;0.00894506708346087!GO:0033619;membrane protein proteolysis;0.00894506708346087!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00894506708346087!GO:0008092;cytoskeletal protein binding;0.00905182242793739!GO:0030036;actin cytoskeleton organization and biogenesis;0.00928314750236205!GO:0030118;clathrin coat;0.00935939611120565!GO:0033673;negative regulation of kinase activity;0.00941058139742408!GO:0006469;negative regulation of protein kinase activity;0.00941058139742408!GO:0007034;vacuolar transport;0.00947329276685213!GO:0051539;4 iron, 4 sulfur cluster binding;0.00947887641851675!GO:0003678;DNA helicase activity;0.00980682716502724!GO:0042158;lipoprotein biosynthetic process;0.00997891684757365!GO:0009967;positive regulation of signal transduction;0.0101435184560419!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0102004739287929!GO:0000428;DNA-directed RNA polymerase complex;0.0102004739287929!GO:0030522;intracellular receptor-mediated signaling pathway;0.0104921608822609!GO:0005637;nuclear inner membrane;0.0108739773130586!GO:0031301;integral to organelle membrane;0.010965919016643!GO:0046822;regulation of nucleocytoplasmic transport;0.0110304509312109!GO:0043488;regulation of mRNA stability;0.0110524223869161!GO:0043487;regulation of RNA stability;0.0110524223869161!GO:0030027;lamellipodium;0.0111018534496698!GO:0030308;negative regulation of cell growth;0.0114586792137266!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0114586792137266!GO:0015002;heme-copper terminal oxidase activity;0.0114586792137266!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0114586792137266!GO:0004129;cytochrome-c oxidase activity;0.0114586792137266!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0116791910465339!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0117890537466727!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0118850411408886!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0120494535108075!GO:0006611;protein export from nucleus;0.0121934235373864!GO:0005869;dynactin complex;0.0122968008461587!GO:0005684;U2-dependent spliceosome;0.012379750870556!GO:0006376;mRNA splice site selection;0.0123980234063364!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0123980234063364!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0123980234063364!GO:0046483;heterocycle metabolic process;0.0131051970970703!GO:0030119;AP-type membrane coat adaptor complex;0.0133777809010242!GO:0042326;negative regulation of phosphorylation;0.0136321329256698!GO:0005832;chaperonin-containing T-complex;0.0138235333926828!GO:0031124;mRNA 3'-end processing;0.0143408794714353!GO:0008094;DNA-dependent ATPase activity;0.0146224161857894!GO:0006643;membrane lipid metabolic process;0.0146529132675876!GO:0051348;negative regulation of transferase activity;0.0147329470328634!GO:0031625;ubiquitin protein ligase binding;0.0152904405433757!GO:0022890;inorganic cation transmembrane transporter activity;0.0153400673327265!GO:0044433;cytoplasmic vesicle part;0.0157474585490348!GO:0032508;DNA duplex unwinding;0.0158167513859355!GO:0032392;DNA geometric change;0.0158167513859355!GO:0000287;magnesium ion binding;0.0158340780177519!GO:0030658;transport vesicle membrane;0.0163030021339586!GO:0045893;positive regulation of transcription, DNA-dependent;0.0163599696711652!GO:0006595;polyamine metabolic process;0.0165320840434054!GO:0006289;nucleotide-excision repair;0.0169261587592161!GO:0043596;nuclear replication fork;0.0169261587592161!GO:0003923;GPI-anchor transamidase activity;0.0170560931249322!GO:0016255;attachment of GPI anchor to protein;0.0170560931249322!GO:0042765;GPI-anchor transamidase complex;0.0170560931249322!GO:0051101;regulation of DNA binding;0.0173203720051055!GO:0004860;protein kinase inhibitor activity;0.0173600753833672!GO:0043624;cellular protein complex disassembly;0.017420776972094!GO:0007021;tubulin folding;0.017420776972094!GO:0008632;apoptotic program;0.017420776972094!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0175940023887221!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0181467492086133!GO:0050811;GABA receptor binding;0.0181713658837841!GO:0047485;protein N-terminus binding;0.0181713658837841!GO:0030127;COPII vesicle coat;0.0181713658837841!GO:0012507;ER to Golgi transport vesicle membrane;0.0181713658837841!GO:0051920;peroxiredoxin activity;0.0183256027503093!GO:0046966;thyroid hormone receptor binding;0.0188472712322617!GO:0030131;clathrin adaptor complex;0.0189584501532161!GO:0004674;protein serine/threonine kinase activity;0.0191299248235611!GO:0004185;serine carboxypeptidase activity;0.0191342356083051!GO:0005874;microtubule;0.0191931491013172!GO:0007264;small GTPase mediated signal transduction;0.019244176930728!GO:0008180;signalosome;0.0197675502950782!GO:0005669;transcription factor TFIID complex;0.0198357637293608!GO:0006607;NLS-bearing substrate import into nucleus;0.0199116612574249!GO:0000096;sulfur amino acid metabolic process;0.0212455882253763!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0214307735172839!GO:0035035;histone acetyltransferase binding;0.0220999124772237!GO:0046983;protein dimerization activity;0.0225662131621914!GO:0005138;interleukin-6 receptor binding;0.0228482801281901!GO:0006417;regulation of translation;0.0230727258961314!GO:0006378;mRNA polyadenylation;0.0230727258961314!GO:0051098;regulation of binding;0.0230727258961314!GO:0017166;vinculin binding;0.0230727258961314!GO:0008022;protein C-terminus binding;0.0231209558139445!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0233059120171471!GO:0006740;NADPH regeneration;0.0233059120171471!GO:0006098;pentose-phosphate shunt;0.0233059120171471!GO:0006518;peptide metabolic process;0.0237322215906293!GO:0050662;coenzyme binding;0.02446660362813!GO:0030503;regulation of cell redox homeostasis;0.0247082766413965!GO:0005595;collagen type XII;0.0249221095554464!GO:0007052;mitotic spindle organization and biogenesis;0.0250087124336999!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0252235140626164!GO:0032940;secretion by cell;0.0252235140626164!GO:0008538;proteasome activator activity;0.0252235140626164!GO:0005862;muscle thin filament tropomyosin;0.0253474106620414!GO:0006118;electron transport;0.0254637917967118!GO:0003702;RNA polymerase II transcription factor activity;0.0255827101254323!GO:0006354;RNA elongation;0.025857596318327!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0268498742747755!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0268944880861319!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0268944880861319!GO:0012506;vesicle membrane;0.0272664393890435!GO:0031970;organelle envelope lumen;0.0278685038454857!GO:0007041;lysosomal transport;0.0280789887589134!GO:0000792;heterochromatin;0.0281765744800934!GO:0000776;kinetochore;0.0282459197464957!GO:0019752;carboxylic acid metabolic process;0.0288666390860118!GO:0000775;chromosome, pericentric region;0.0297067875910041!GO:0030660;Golgi-associated vesicle membrane;0.0299750934821315!GO:0032774;RNA biosynthetic process;0.0301454394457947!GO:0045926;negative regulation of growth;0.0305354090439345!GO:0032984;macromolecular complex disassembly;0.0310242012172131!GO:0007030;Golgi organization and biogenesis;0.0310661118655481!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0318099172088351!GO:0045941;positive regulation of transcription;0.032146693218217!GO:0030029;actin filament-based process;0.0327087885883555!GO:0008610;lipid biosynthetic process;0.0327188313998857!GO:0004527;exonuclease activity;0.0328249917529282!GO:0006082;organic acid metabolic process;0.0334736166618232!GO:0030433;ER-associated protein catabolic process;0.0335574794193558!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0335574794193558!GO:0006351;transcription, DNA-dependent;0.0337606547921292!GO:0006778;porphyrin metabolic process;0.0341516211700816!GO:0033013;tetrapyrrole metabolic process;0.0341516211700816!GO:0048144;fibroblast proliferation;0.0341859223537767!GO:0048145;regulation of fibroblast proliferation;0.0341859223537767!GO:0048146;positive regulation of fibroblast proliferation;0.0341859223537767!GO:0022415;viral reproductive process;0.0343718663513907!GO:0004228;gelatinase A activity;0.0345372655446483!GO:0001955;blood vessel maturation;0.0345372655446483!GO:0006268;DNA unwinding during replication;0.0350893766593819!GO:0004192;cathepsin D activity;0.0355215829973395!GO:0031418;L-ascorbic acid binding;0.0357091304802086!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0357333847088207!GO:0032507;maintenance of cellular protein localization;0.0357582772119698!GO:0006310;DNA recombination;0.0362259376450629!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0362259376450629!GO:0010257;NADH dehydrogenase complex assembly;0.0362259376450629!GO:0033108;mitochondrial respiratory chain complex assembly;0.0362259376450629!GO:0000118;histone deacetylase complex;0.0367418762410115!GO:0008097;5S rRNA binding;0.0374281625865336!GO:0006007;glucose catabolic process;0.0375075221828357!GO:0000339;RNA cap binding;0.038300774654399!GO:0005758;mitochondrial intermembrane space;0.038300774654399!GO:0000209;protein polyubiquitination;0.038300774654399!GO:0005784;translocon complex;0.038817644462609!GO:0008637;apoptotic mitochondrial changes;0.0391473498652281!GO:0030149;sphingolipid catabolic process;0.0391744210077586!GO:0030865;cortical cytoskeleton organization and biogenesis;0.039462482676961!GO:0031371;ubiquitin conjugating enzyme complex;0.039843767174948!GO:0003988;acetyl-CoA C-acyltransferase activity;0.0400114935936319!GO:0008320;protein transmembrane transporter activity;0.0404221450560818!GO:0006275;regulation of DNA replication;0.0411453529861843!GO:0007004;telomere maintenance via telomerase;0.0413225944234144!GO:0022411;cellular component disassembly;0.0413866399936537!GO:0031529;ruffle organization and biogenesis;0.0416954901987049!GO:0030911;TPR domain binding;0.042161900367643!GO:0031123;RNA 3'-end processing;0.0428373914223079!GO:0043241;protein complex disassembly;0.0436284621926885!GO:0002102;podosome;0.0449210993476367!GO:0050790;regulation of catalytic activity;0.0449213150161368!GO:0019210;kinase inhibitor activity;0.0452856627509521!GO:0022884;macromolecule transmembrane transporter activity;0.0457389030933269!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0457389030933269!GO:0042168;heme metabolic process;0.0459562888594249!GO:0009889;regulation of biosynthetic process;0.0460805465515216!GO:0033559;unsaturated fatty acid metabolic process;0.0471545498304861!GO:0006636;unsaturated fatty acid biosynthetic process;0.0471545498304861!GO:0043601;nuclear replisome;0.0473360720954987!GO:0030894;replisome;0.0473360720954987!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0475243370667818!GO:0042585;germinal vesicle;0.0482210800856706!GO:0007088;regulation of mitosis;0.0482210800856706!GO:0045185;maintenance of protein localization;0.0486625438117946!GO:0016408;C-acyltransferase activity;0.0486625438117946!GO:0004563;beta-N-acetylhexosaminidase activity;0.0492685510924691!GO:0008234;cysteine-type peptidase activity;0.0492685510924691!GO:0044438;microbody part;0.04973811930472!GO:0044439;peroxisomal part;0.04973811930472!GO:0032200;telomere organization and biogenesis;0.0498577147218235!GO:0000723;telomere maintenance;0.0498577147218235 | |||
|sample_id=10536 | |sample_id=10536 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 99: | ||
|sample_tissue=liver | |sample_tissue=liver | ||
|top_motifs=NKX3-1:2.4014013986;TEF:1.54069538628;ELK1,4_GABP{A,B1}:1.44567927561;PAX4:1.13909978125;LHX3,4:1.12533685023;EN1,2:1.08481260817;FOXA2:1.03941062656;HOXA9_MEIS1:1.03464733533;ONECUT1,2:1.03399668818;ARID5B:1.00443533659;EVI1:0.978658800416;NKX2-1,4:0.949393784112;bHLH_family:0.843416368739;HLF:0.835606116481;HOX{A4,D4}:0.771017703564;AHR_ARNT_ARNT2:0.747460778593;HSF1,2:0.734652891876;ADNP_IRX_SIX_ZHX:0.692261909884;RBPJ:0.670441625949;NKX3-2:0.667181571727;DBP:0.654912855142;TFDP1:0.636161791472;NKX6-1,2:0.632362454882;GTF2A1,2:0.617436015055;PDX1:0.593026787358;FOXL1:0.569308630384;NFIX:0.553426811336;TLX1..3_NFIC{dimer}:0.525410380469;SOX17:0.516837612648;SREBF1,2:0.515187303235;NRF1:0.510738300575;MYOD1:0.488833667446;T:0.456333151556;TBX4,5:0.451574999634;MAFB:0.44334241849;PPARG:0.441272480641;LEF1_TCF7_TCF7L1,2:0.439404967651;ATF6:0.432210564403;ZNF143:0.417563174333;PAX8:0.408571246146;TBP:0.406230593153;E2F1..5:0.396951693748;GATA6:0.383313184086;CEBPA,B_DDIT3:0.374060362738;NFE2L2:0.373746253429;NR6A1:0.365571879888;PRDM1:0.33747598579;GFI1:0.328277460651;IKZF1:0.328157444586;CRX:0.319026819047;SRF:0.298635375992;FOXP1:0.293040183002;BREu{core}:0.290014711121;PRRX1,2:0.281073297545;MTE{core}:0.278627409011;FOXP3:0.269760944646;BPTF:0.260985405653;NFATC1..3:0.244387888725;FOSL2:0.243723202969;NFE2:0.24366307789;STAT2,4,6:0.23694829853;HBP1_HMGB_SSRP1_UBTF:0.230008512777;PAX2:0.227506265687;XBP1:0.227365807315;POU6F1:0.226678004441;UFEwm:0.217986627925;NFIL3:0.214726990968;ATF5_CREB3:0.188524119907;FOXN1:0.184195739232;ATF4:0.173142245759;EGR1..3:0.169564426788;GATA4:0.166602616323;GCM1,2:0.151135838209;BACH2:0.150503624131;AIRE:0.146291491015;JUN:0.138264214869;FOS_FOS{B,L1}_JUN{B,D}:0.135928312942;VSX1,2:0.132378123767;REST:0.117040096598;NKX2-2,8:0.111000956957;NFY{A,B,C}:0.0994297254109;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.0993323113479;POU3F1..4:0.0976687130621;NKX2-3_NKX2-5:0.0918089761575;NFKB1_REL_RELA:0.087034705481;MYBL2:0.0713416825633;PITX1..3:0.0696444702808;STAT5{A,B}:0.0678858743056;YY1:0.0506109313413;TEAD1:0.0445597565827;RUNX1..3:0.0418964426475;MYB:0.0368254090698;RFX1:0.0309020234924;HIC1:0.0234244602133;NR3C1:0.0218407053682;SOX5:0.0213660693127;HOX{A5,B5}:0.0203000449423;FOXD3:0.0183603687927;FOXQ1:0.0102444788627;TAL1_TCF{3,4,12}:0.00736752200898;GLI1..3:0.000413309746827;TFAP2B:-0.00109982488468;STAT1,3:-0.0141044596334;ATF2:-0.0197210021177;HNF1A:-0.0368633591951;POU5F1:-0.0512452111609;ZNF384:-0.0514733771388;RXR{A,B,G}:-0.0563027898623;ZNF238:-0.0668037535619;PBX1:-0.076201795058;ZFP161:-0.081188491186;MED-1{core}:-0.109911618286;NHLH1,2:-0.121933852846;PAX5:-0.129012589961;ZBTB6:-0.142053181759;MEF2{A,B,C,D}:-0.142414757277;GTF2I:-0.151673039959;ESRRA:-0.161296822434;IRF1,2:-0.164540617084;CDX1,2,4:-0.165748464774;PATZ1:-0.168150745314;IRF7:-0.182989085032;NFE2L1:-0.190422942617;GZF1:-0.19768765216;NR1H4:-0.208539172287;TP53:-0.217185526246;FOXM1:-0.217489252201;ELF1,2,4:-0.223097754058;FOX{D1,D2}:-0.22697054288;PAX6:-0.239702327016;RFX2..5_RFXANK_RFXAP:-0.255819270573;OCT4_SOX2{dimer}:-0.257486871027;ZBTB16:-0.260666538831;ZNF423:-0.286051080037;FOX{F1,F2,J1}:-0.288857326537;MAZ:-0.294854371619;HMGA1,2:-0.297688402438;SPZ1:-0.299419889524;GFI1B:-0.320648075921;CDC5L:-0.324552719983;RORA:-0.325070992394;SP1:-0.343706791848;XCPE1{core}:-0.354747840459;TFCP2:-0.361467599356;SOX2:-0.364242045358;ALX4:-0.377661135118;MYFfamily:-0.384914120593;SPI1:-0.392431025294;CUX2:-0.392524397703;POU1F1:-0.401499278293;SOX{8,9,10}:-0.406142519949;SPIB:-0.422235799947;TFAP4:-0.426548234092;HAND1,2:-0.433507073356;HIF1A:-0.434105609708;CREB1:-0.452275555153;IKZF2:-0.480787778852;HNF4A_NR2F1,2:-0.488276250861;ZNF148:-0.495086026982;NANOG{mouse}:-0.495947476934;MTF1:-0.510985770627;DMAP1_NCOR{1,2}_SMARC:-0.513767787625;FOX{I1,J2}:-0.517267325518;PAX3,7:-0.543394449643;HES1:-0.554668387205;MZF1:-0.569595957281;ZEB1:-0.614749567994;ETS1,2:-0.617850355007;LMO2:-0.618166255187;HMX1:-0.635052774973;TLX2:-0.638956271232;AR:-0.643348303169;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.650682347797;SMAD1..7,9:-0.681783542512;ZIC1..3:-0.686824374351;RREB1:-0.701168851768;ALX1:-0.716498316369;ESR1:-0.72161036216;TGIF1:-0.7399111131;POU2F1..3:-0.792163669443;EP300:-0.813271578488;FOXO1,3,4:-0.814142824118;SNAI1..3:-0.817567573592;PAX1,9:-0.888247298086;HOX{A6,A7,B6,B7}:-0.891954812764;EBF1:-0.89613393652;NR5A1,2:-1.07128984748;KLF4:-1.13677688433;TFAP2{A,C}:-1.20757174095;TOPORS:-1.23145913446;RXRA_VDR{dimer}:-1.34058595797;NANOG:-1.34684633679 | |top_motifs=NKX3-1:2.4014013986;TEF:1.54069538628;ELK1,4_GABP{A,B1}:1.44567927561;PAX4:1.13909978125;LHX3,4:1.12533685023;EN1,2:1.08481260817;FOXA2:1.03941062656;HOXA9_MEIS1:1.03464733533;ONECUT1,2:1.03399668818;ARID5B:1.00443533659;EVI1:0.978658800416;NKX2-1,4:0.949393784112;bHLH_family:0.843416368739;HLF:0.835606116481;HOX{A4,D4}:0.771017703564;AHR_ARNT_ARNT2:0.747460778593;HSF1,2:0.734652891876;ADNP_IRX_SIX_ZHX:0.692261909884;RBPJ:0.670441625949;NKX3-2:0.667181571727;DBP:0.654912855142;TFDP1:0.636161791472;NKX6-1,2:0.632362454882;GTF2A1,2:0.617436015055;PDX1:0.593026787358;FOXL1:0.569308630384;NFIX:0.553426811336;TLX1..3_NFIC{dimer}:0.525410380469;SOX17:0.516837612648;SREBF1,2:0.515187303235;NRF1:0.510738300575;MYOD1:0.488833667446;T:0.456333151556;TBX4,5:0.451574999634;MAFB:0.44334241849;PPARG:0.441272480641;LEF1_TCF7_TCF7L1,2:0.439404967651;ATF6:0.432210564403;ZNF143:0.417563174333;PAX8:0.408571246146;TBP:0.406230593153;E2F1..5:0.396951693748;GATA6:0.383313184086;CEBPA,B_DDIT3:0.374060362738;NFE2L2:0.373746253429;NR6A1:0.365571879888;PRDM1:0.33747598579;GFI1:0.328277460651;IKZF1:0.328157444586;CRX:0.319026819047;SRF:0.298635375992;FOXP1:0.293040183002;BREu{core}:0.290014711121;PRRX1,2:0.281073297545;MTE{core}:0.278627409011;FOXP3:0.269760944646;BPTF:0.260985405653;NFATC1..3:0.244387888725;FOSL2:0.243723202969;NFE2:0.24366307789;STAT2,4,6:0.23694829853;HBP1_HMGB_SSRP1_UBTF:0.230008512777;PAX2:0.227506265687;XBP1:0.227365807315;POU6F1:0.226678004441;UFEwm:0.217986627925;NFIL3:0.214726990968;ATF5_CREB3:0.188524119907;FOXN1:0.184195739232;ATF4:0.173142245759;EGR1..3:0.169564426788;GATA4:0.166602616323;GCM1,2:0.151135838209;BACH2:0.150503624131;AIRE:0.146291491015;JUN:0.138264214869;FOS_FOS{B,L1}_JUN{B,D}:0.135928312942;VSX1,2:0.132378123767;REST:0.117040096598;NKX2-2,8:0.111000956957;NFY{A,B,C}:0.0994297254109;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.0993323113479;POU3F1..4:0.0976687130621;NKX2-3_NKX2-5:0.0918089761575;NFKB1_REL_RELA:0.087034705481;MYBL2:0.0713416825633;PITX1..3:0.0696444702808;STAT5{A,B}:0.0678858743056;YY1:0.0506109313413;TEAD1:0.0445597565827;RUNX1..3:0.0418964426475;MYB:0.0368254090698;RFX1:0.0309020234924;HIC1:0.0234244602133;NR3C1:0.0218407053682;SOX5:0.0213660693127;HOX{A5,B5}:0.0203000449423;FOXD3:0.0183603687927;FOXQ1:0.0102444788627;TAL1_TCF{3,4,12}:0.00736752200898;GLI1..3:0.000413309746827;TFAP2B:-0.00109982488468;STAT1,3:-0.0141044596334;ATF2:-0.0197210021177;HNF1A:-0.0368633591951;POU5F1:-0.0512452111609;ZNF384:-0.0514733771388;RXR{A,B,G}:-0.0563027898623;ZNF238:-0.0668037535619;PBX1:-0.076201795058;ZFP161:-0.081188491186;MED-1{core}:-0.109911618286;NHLH1,2:-0.121933852846;PAX5:-0.129012589961;ZBTB6:-0.142053181759;MEF2{A,B,C,D}:-0.142414757277;GTF2I:-0.151673039959;ESRRA:-0.161296822434;IRF1,2:-0.164540617084;CDX1,2,4:-0.165748464774;PATZ1:-0.168150745314;IRF7:-0.182989085032;NFE2L1:-0.190422942617;GZF1:-0.19768765216;NR1H4:-0.208539172287;TP53:-0.217185526246;FOXM1:-0.217489252201;ELF1,2,4:-0.223097754058;FOX{D1,D2}:-0.22697054288;PAX6:-0.239702327016;RFX2..5_RFXANK_RFXAP:-0.255819270573;OCT4_SOX2{dimer}:-0.257486871027;ZBTB16:-0.260666538831;ZNF423:-0.286051080037;FOX{F1,F2,J1}:-0.288857326537;MAZ:-0.294854371619;HMGA1,2:-0.297688402438;SPZ1:-0.299419889524;GFI1B:-0.320648075921;CDC5L:-0.324552719983;RORA:-0.325070992394;SP1:-0.343706791848;XCPE1{core}:-0.354747840459;TFCP2:-0.361467599356;SOX2:-0.364242045358;ALX4:-0.377661135118;MYFfamily:-0.384914120593;SPI1:-0.392431025294;CUX2:-0.392524397703;POU1F1:-0.401499278293;SOX{8,9,10}:-0.406142519949;SPIB:-0.422235799947;TFAP4:-0.426548234092;HAND1,2:-0.433507073356;HIF1A:-0.434105609708;CREB1:-0.452275555153;IKZF2:-0.480787778852;HNF4A_NR2F1,2:-0.488276250861;ZNF148:-0.495086026982;NANOG{mouse}:-0.495947476934;MTF1:-0.510985770627;DMAP1_NCOR{1,2}_SMARC:-0.513767787625;FOX{I1,J2}:-0.517267325518;PAX3,7:-0.543394449643;HES1:-0.554668387205;MZF1:-0.569595957281;ZEB1:-0.614749567994;ETS1,2:-0.617850355007;LMO2:-0.618166255187;HMX1:-0.635052774973;TLX2:-0.638956271232;AR:-0.643348303169;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.650682347797;SMAD1..7,9:-0.681783542512;ZIC1..3:-0.686824374351;RREB1:-0.701168851768;ALX1:-0.716498316369;ESR1:-0.72161036216;TGIF1:-0.7399111131;POU2F1..3:-0.792163669443;EP300:-0.813271578488;FOXO1,3,4:-0.814142824118;SNAI1..3:-0.817567573592;PAX1,9:-0.888247298086;HOX{A6,A7,B6,B7}:-0.891954812764;EBF1:-0.89613393652;NR5A1,2:-1.07128984748;KLF4:-1.13677688433;TFAP2{A,C}:-1.20757174095;TOPORS:-1.23145913446;RXRA_VDR{dimer}:-1.34058595797;NANOG:-1.34684633679 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10536-107G5;search_select_hide=table117:FF:10536-107G5 | |||
}} | }} | ||
Latest revision as of 14:28, 3 June 2020
| Name: | cholangiocellular carcinoma cell line:HuH-28 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11283 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11283
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11283
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.647 |
| 10 | 10 | 0.551 |
| 100 | 100 | 0.7 |
| 101 | 101 | 0.558 |
| 102 | 102 | 0.127 |
| 103 | 103 | 0.36 |
| 104 | 104 | 0.228 |
| 105 | 105 | 0.0313 |
| 106 | 106 | 0.0526 |
| 107 | 107 | 0.0766 |
| 108 | 108 | 0.877 |
| 109 | 109 | 0.922 |
| 11 | 11 | 0.432 |
| 110 | 110 | 0.479 |
| 111 | 111 | 0.81 |
| 112 | 112 | 0.0637 |
| 113 | 113 | 0.033 |
| 114 | 114 | 0.855 |
| 115 | 115 | 0.836 |
| 116 | 116 | 0.591 |
| 117 | 117 | 0.577 |
| 118 | 118 | 0.953 |
| 119 | 119 | 0.723 |
| 12 | 12 | 0.806 |
| 120 | 120 | 0.262 |
| 121 | 121 | 0.241 |
| 122 | 122 | 0.583 |
| 123 | 123 | 0.0272 |
| 124 | 124 | 0.777 |
| 125 | 125 | 0.361 |
| 126 | 126 | 0.472 |
| 127 | 127 | 0.125 |
| 128 | 128 | 0.163 |
| 129 | 129 | 0.178 |
| 13 | 13 | 0.974 |
| 130 | 130 | 0.226 |
| 131 | 131 | 0.236 |
| 132 | 132 | 0.431 |
| 133 | 133 | 0.111 |
| 134 | 134 | 0.248 |
| 135 | 135 | 0.762 |
| 136 | 136 | 0.618 |
| 137 | 137 | 0.23 |
| 138 | 138 | 0.748 |
| 139 | 139 | 0.634 |
| 14 | 14 | 0.463 |
| 140 | 140 | 0.307 |
| 141 | 141 | 0.537 |
| 142 | 142 | 0.36 |
| 143 | 143 | 0.235 |
| 144 | 144 | 0.73 |
| 145 | 145 | 0.0894 |
| 146 | 146 | 0.981 |
| 147 | 147 | 0.798 |
| 148 | 148 | 0.682 |
| 149 | 149 | 0.9 |
| 15 | 15 | 0.162 |
| 150 | 150 | 0.903 |
| 151 | 151 | 0.413 |
| 152 | 152 | 0.213 |
| 153 | 153 | 0.417 |
| 154 | 154 | 0.654 |
| 155 | 155 | 0.0431 |
| 156 | 156 | 0.75 |
| 157 | 157 | 0.749 |
| 158 | 158 | 0.29 |
| 159 | 159 | 0.0954 |
| 16 | 16 | 0.941 |
| 160 | 160 | 0.171 |
| 161 | 161 | 0.602 |
| 162 | 162 | 0.213 |
| 163 | 163 | 0.0509 |
| 164 | 164 | 0.851 |
| 165 | 165 | 0.417 |
| 166 | 166 | 0.704 |
| 167 | 167 | 0.00815 |
| 168 | 168 | 0.0494 |
| 169 | 169 | 0.109 |
| 17 | 17 | 0.297 |
| 18 | 18 | 0.405 |
| 19 | 19 | 0.471 |
| 2 | 2 | 0.088 |
| 20 | 20 | 0.341 |
| 21 | 21 | 0.464 |
| 22 | 22 | 0.094 |
| 23 | 23 | 0.0585 |
| 24 | 24 | 0.322 |
| 25 | 25 | 0.337 |
| 26 | 26 | 0.75 |
| 27 | 27 | 0.0683 |
| 28 | 28 | 0.362 |
| 29 | 29 | 0.775 |
| 3 | 3 | 0.917 |
| 30 | 30 | 0.234 |
| 31 | 31 | 0.941 |
| 32 | 32 | 0.402 |
| 33 | 33 | 0.619 |
| 34 | 34 | 0.0498 |
| 35 | 35 | 0.959 |
| 36 | 36 | 0.567 |
| 37 | 37 | 0.883 |
| 38 | 38 | 0.218 |
| 39 | 39 | 0.703 |
| 4 | 4 | 0.595 |
| 40 | 40 | 0.943 |
| 41 | 41 | 0.415 |
| 42 | 42 | 0.873 |
| 43 | 43 | 0.388 |
| 44 | 44 | 0.0543 |
| 45 | 45 | 0.454 |
| 46 | 46 | 0.471 |
| 47 | 47 | 0.574 |
| 48 | 48 | 0.228 |
| 49 | 49 | 0.327 |
| 5 | 5 | 0.0625 |
| 50 | 50 | 0.994 |
| 51 | 51 | 0.286 |
| 52 | 52 | 0.0243 |
| 53 | 53 | 0.19 |
| 54 | 54 | 0.948 |
| 55 | 55 | 0.713 |
| 56 | 56 | 0.0788 |
| 57 | 57 | 0.938 |
| 58 | 58 | 0.0703 |
| 59 | 59 | 0.0298 |
| 6 | 6 | 0.673 |
| 60 | 60 | 0.0769 |
| 61 | 61 | 0.589 |
| 62 | 62 | 0.108 |
| 63 | 63 | 0.797 |
| 64 | 64 | 0.4 |
| 65 | 65 | 0.203 |
| 66 | 66 | 0.014 |
| 67 | 67 | 0.209 |
| 68 | 68 | 0.514 |
| 69 | 69 | 0.344 |
| 7 | 7 | 0.52 |
| 70 | 70 | 0.0353 |
| 71 | 71 | 0.976 |
| 72 | 72 | 0.251 |
| 73 | 73 | 0.5 |
| 74 | 74 | 0.00186 |
| 75 | 75 | 0.138 |
| 76 | 76 | 0.121 |
| 77 | 77 | 0.565 |
| 78 | 78 | 0.00647 |
| 79 | 79 | 0.475 |
| 8 | 8 | 0.802 |
| 80 | 80 | 0.451 |
| 81 | 81 | 0.29 |
| 82 | 82 | 0.343 |
| 83 | 83 | 0.618 |
| 84 | 84 | 0.498 |
| 85 | 85 | 0.523 |
| 86 | 86 | 0.893 |
| 87 | 87 | 0.283 |
| 88 | 88 | 0.479 |
| 89 | 89 | 0.412 |
| 9 | 9 | 0.0315 |
| 90 | 90 | 0.464 |
| 91 | 91 | 0.00358 |
| 92 | 92 | 0.157 |
| 93 | 93 | 0.804 |
| 94 | 94 | 0.978 |
| 95 | 95 | 0.156 |
| 96 | 96 | 0.248 |
| 97 | 97 | 0.665 |
| 98 | 98 | 0.0161 |
| 99 | 99 | 0.238 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11283
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0102842 cholangioma cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000181 (metabolising cell)
0000417 (endopolyploid cell)
0000668 (parenchymal cell)
0000412 (polyploid cell)
0000255 (eukaryotic cell)
0000182 (hepatocyte)
DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
7 (disease of anatomical entity)
305 (carcinoma)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002107 (liver)
0002100 (trunk)
0001282 (intralobular bile duct)
0002394 (bile duct)
0000058 (duct)
0001007 (digestive system)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009569 (subdivision of trunk)
0002368 (endocrine gland)
0009842 (acinus)
0000353 (parenchyma)
0003704 (intrahepatic bile duct)
0005177 (trunk region element)
0002365 (exocrine gland)
0005172 (abdomen element)
0006925 (digestive gland)
0002530 (gland)
0003928 (digestive system duct)
0010317 (germ layer / neural crest derived structure)
0005173 (abdominal segment element)
0002417 (abdominal segment of trunk)
0000949 (endocrine system)
0001280 (liver parenchyma)
0001171 (portal lobule)
0004647 (liver lobule)
0002294 (biliary system)
0001173 (biliary tree)
0001172 (hepatic acinus)
0002330 (exocrine system)
0000916 (abdomen)
0002423 (hepatobiliary system)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0100224 (liver cell line sample)
0100578 (hepatoma cell line sample)
0102842 (cholangioma cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
CL:0000223 (endodermal cell)
UBERON:0001041 (foregut)
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0003104 (mesenchyme)
UBERON:0004161 (septum transversum)
UBERON:0009497 (epithelium of foregut-midgut junction)
UBERON:0010316 (germ layer / neural crest)
